BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041072
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small
          Heat Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small
          Heat Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small
          Heat Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small
          Heat Shock Protein
          Length = 151

 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%)

Query: 12 AKPFEILKQTPLIIPKGVDRHQTLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENR 71
          A PF+  +     I  G         AR  WKETP A V   D+ G+KK+ VK+EVE+  
Sbjct: 18 ADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGN 77

Query: 72 VLRMRGER 79
          VL + GER
Sbjct: 78 VLVVSGER 85


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 38 ARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGER 79
          AR  WKETP A V   D+ G+KK+ VK+EVE+  VL + GER
Sbjct: 2  ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGER 43


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 30.4 bits (67), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 38 ARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGER 79
          AR  WKETP A V   D+ G+KK+ VK+EVE+  VL + GER
Sbjct: 1  ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGER 42


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 100

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 50 VITLDILGIKKDNVKIEVEENRVLRMRGERKSSS 83
          V+  D+ GI    +++++++  +L +RGERKS S
Sbjct: 17 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSES 49


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 103

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 50 VITLDILGIKKDNVKIEVEENRVLRMRGERKSSS 83
          V+  D+ GI    +++++++  +L +RGERKS S
Sbjct: 20 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSES 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,926,844
Number of Sequences: 62578
Number of extensions: 97057
Number of successful extensions: 242
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)