Query 041072
Match_columns 110
No_of_seqs 141 out of 1113
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 9.6E-23 2.1E-27 143.4 8.9 73 35-110 31-135 (142)
2 PRK10743 heat shock protein Ib 99.9 2.5E-21 5.4E-26 135.5 8.9 71 37-110 35-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 4E-21 8.7E-26 134.9 9.6 73 35-110 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.8 3.2E-18 6.9E-23 111.5 7.8 57 39-95 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.7 2.1E-17 4.6E-22 108.5 9.3 69 41-110 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.7 8.5E-17 1.9E-21 104.6 7.6 56 39-95 2-93 (93)
7 cd06497 ACD_alphaA-crystallin_ 99.7 1.8E-16 3.9E-21 102.8 7.3 54 41-95 4-86 (86)
8 cd06470 ACD_IbpA-B_like Alpha- 99.7 2.4E-16 5.2E-21 102.6 7.7 56 39-95 2-90 (90)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.6 7.5E-16 1.6E-20 99.2 7.1 54 41-95 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.6 6.1E-16 1.3E-20 99.6 6.5 54 41-95 2-81 (81)
11 cd06475 ACD_HspB1_like Alpha c 99.6 1.6E-15 3.4E-20 98.4 7.4 54 40-94 3-85 (86)
12 cd06498 ACD_alphaB-crystallin_ 99.6 2.2E-15 4.8E-20 97.4 7.3 54 42-96 2-84 (84)
13 cd06476 ACD_HspB2_like Alpha c 99.6 1.3E-14 2.9E-19 93.6 6.6 52 43-95 3-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.5 9.7E-14 2.1E-18 90.1 6.1 51 44-95 4-87 (87)
15 cd06477 ACD_HspB3_Like Alpha c 99.5 1.4E-13 3.1E-18 88.9 6.4 51 43-94 3-82 (83)
16 cd06526 metazoan_ACD Alpha-cry 99.5 1.4E-13 3.1E-18 88.0 6.0 49 46-95 6-83 (83)
17 cd06464 ACD_sHsps-like Alpha-c 99.5 3.1E-13 6.7E-18 85.3 7.0 54 41-95 1-88 (88)
18 KOG0710 Molecular chaperone (s 99.4 1.1E-12 2.3E-17 96.6 7.0 72 39-110 86-195 (196)
19 cd06482 ACD_HspB10 Alpha cryst 99.3 3.1E-12 6.7E-17 83.3 6.3 36 45-81 6-41 (87)
20 cd06480 ACD_HspB8_like Alpha-c 99.1 4.6E-10 9.9E-15 73.7 5.9 51 43-94 11-90 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.0 2.4E-09 5.3E-14 64.8 6.9 53 42-95 1-80 (80)
22 cd06469 p23_DYX1C1_like p23_li 98.9 3.7E-09 8.1E-14 66.0 5.6 56 42-98 1-71 (78)
23 KOG3591 Alpha crystallins [Pos 98.9 8E-09 1.7E-13 74.9 7.9 70 39-110 64-162 (173)
24 PF05455 GvpH: GvpH; InterPro 98.8 1.3E-08 2.7E-13 74.0 7.4 62 39-100 93-172 (177)
25 cd06463 p23_like Proteins cont 98.6 2.7E-07 5.9E-12 57.0 7.2 56 42-98 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.4 9.8E-07 2.1E-11 55.5 6.4 57 41-98 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.0 9.1E-05 2E-09 45.3 8.6 56 39-95 2-79 (79)
28 cd06467 p23_NUDC_like p23_like 97.8 0.00023 5E-09 44.8 7.6 58 40-98 1-77 (85)
29 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00019 4.1E-09 45.8 7.0 58 40-98 1-77 (85)
30 cd06465 p23_hB-ind1_like p23_l 97.7 0.00048 1E-08 45.6 8.1 56 39-97 2-78 (108)
31 cd06489 p23_CS_hSgt1_like p23_ 97.6 0.00039 8.5E-09 44.0 6.7 57 41-98 1-77 (84)
32 cd06468 p23_CacyBP p23_like do 97.4 0.0019 4.1E-08 41.3 8.0 59 39-98 3-85 (92)
33 cd06488 p23_melusin_like p23_l 97.2 0.0039 8.5E-08 39.9 8.1 59 39-98 2-80 (87)
34 cd06494 p23_NUDCD2_like p23-li 97.1 0.0043 9.3E-08 40.6 7.3 59 39-98 7-83 (93)
35 KOG1309 Suppressor of G2 allel 96.7 0.0093 2E-07 43.9 7.2 41 39-80 5-45 (196)
36 cd00237 p23 p23 binds heat sho 96.5 0.011 2.3E-07 39.6 5.7 39 38-79 2-40 (106)
37 PF08190 PIH1: pre-RNA process 96.3 0.013 2.9E-07 45.1 6.2 48 46-94 260-327 (328)
38 PLN03088 SGT1, suppressor of 95.4 0.082 1.8E-06 41.8 7.4 38 39-77 158-195 (356)
39 cd06492 p23_mNUDC_like p23-lik 95.4 0.11 2.4E-06 33.3 6.8 57 41-98 2-79 (87)
40 cd06495 p23_NUDCD3_like p23-li 94.9 0.24 5.1E-06 33.0 7.4 58 39-97 6-86 (102)
41 cd06490 p23_NCB5OR p23_like do 92.3 0.43 9.3E-06 30.4 4.9 36 40-76 1-38 (87)
42 cd06477 ACD_HspB3_Like Alpha c 83.8 2.7 5.8E-05 26.8 4.2 30 48-78 51-82 (83)
43 cd06482 ACD_HspB10 Alpha cryst 82.1 2.4 5.2E-05 27.3 3.5 15 40-54 24-38 (87)
44 cd06471 ACD_LpsHSP_like Group 80.3 3 6.4E-05 26.4 3.5 30 47-77 62-91 (93)
45 cd06481 ACD_HspB9_like Alpha c 78.2 3.3 7.2E-05 26.3 3.2 32 46-78 53-86 (87)
46 cd06472 ACD_ScHsp26_like Alpha 75.6 4.9 0.00011 25.4 3.5 31 46-77 59-90 (92)
47 PF00011 HSP20: Hsp20/alpha cr 71.8 12 0.00027 23.6 4.8 34 47-81 55-89 (102)
48 cd06478 ACD_HspB4-5-6 Alpha-cr 71.5 7 0.00015 24.5 3.4 29 49-78 52-82 (83)
49 cd06498 ACD_alphaB-crystallin_ 71.5 7.7 0.00017 24.5 3.6 30 49-79 52-83 (84)
50 PF08308 PEGA: PEGA domain; I 70.6 15 0.00032 21.8 4.7 39 40-78 27-66 (71)
51 cd06526 metazoan_ACD Alpha-cry 70.0 8.3 0.00018 23.9 3.5 32 47-78 50-82 (83)
52 cd06476 ACD_HspB2_like Alpha c 68.8 11 0.00024 23.7 4.0 29 49-78 52-82 (83)
53 cd06480 ACD_HspB8_like Alpha-c 67.7 13 0.00028 24.1 4.1 31 47-77 58-89 (91)
54 PF04972 BON: BON domain; Int 67.3 14 0.0003 21.4 4.0 26 56-82 12-37 (64)
55 TIGR02856 spore_yqfC sporulati 64.1 8.8 0.00019 24.6 2.8 21 58-79 41-61 (85)
56 cd06469 p23_DYX1C1_like p23_li 62.6 31 0.00066 20.6 5.2 33 47-80 36-69 (78)
57 COG5091 SGT1 Suppressor of G2 62.1 21 0.00046 28.4 5.0 42 39-81 178-219 (368)
58 cd06479 ACD_HspB7_like Alpha c 61.8 15 0.00034 23.1 3.6 32 47-79 48-81 (81)
59 PF14730 DUF4468: Domain of un 56.3 31 0.00068 21.8 4.4 13 84-96 74-86 (91)
60 PF13349 DUF4097: Domain of un 54.0 66 0.0014 21.7 7.0 54 39-97 67-130 (166)
61 PF10988 DUF2807: Protein of u 52.2 47 0.001 22.9 5.2 56 39-96 12-67 (181)
62 PF05309 TraE: TraE protein; 50.6 23 0.0005 25.4 3.4 9 84-92 170-178 (187)
63 KOG3413 Mitochondrial matrix p 47.9 11 0.00025 26.9 1.4 11 84-94 78-88 (156)
64 PF02736 Myosin_N: Myosin N-te 46.8 45 0.00097 18.2 3.5 35 42-76 5-39 (42)
65 PF12992 DUF3876: Domain of un 45.4 85 0.0019 20.5 5.6 40 35-76 24-68 (95)
66 KOG1667 Zn2+-binding protein M 44.8 1.1E+02 0.0024 24.1 6.4 40 36-76 213-252 (320)
67 COG0071 IbpA Molecular chapero 43.5 66 0.0014 22.0 4.7 33 47-80 100-133 (146)
68 PRK11198 LysM domain/BON super 42.9 38 0.00082 23.5 3.4 26 56-82 38-63 (147)
69 KOG3591 Alpha crystallins [Pos 41.7 26 0.00056 25.4 2.5 28 55-82 123-151 (173)
70 KOG3260 Calcyclin-binding prot 41.1 48 0.001 24.8 3.8 36 40-76 77-112 (224)
71 KOG3158 HSP90 co-chaperone p23 40.5 54 0.0012 24.1 3.9 43 37-82 7-49 (180)
72 COG4004 Uncharacterized protei 39.8 80 0.0017 20.8 4.3 33 40-77 26-58 (96)
73 PF07873 YabP: YabP family; I 39.3 31 0.00066 20.7 2.2 21 58-79 23-43 (66)
74 PF13620 CarboxypepD_reg: Carb 38.7 37 0.00081 20.2 2.6 29 47-75 48-77 (82)
75 PRK01379 cyaY frataxin-like pr 38.1 56 0.0012 21.7 3.5 27 62-98 29-55 (103)
76 PRK13726 conjugal transfer pil 37.5 45 0.00097 24.4 3.2 10 84-93 170-179 (188)
77 TIGR03422 mito_frataxin fratax 37.3 23 0.00051 23.2 1.5 11 84-94 33-43 (97)
78 PLN02711 Probable galactinol-- 36.1 91 0.002 27.9 5.3 45 62-109 720-775 (777)
79 TIGR02761 TraE_TIGR type IV co 33.9 57 0.0012 23.5 3.2 9 84-92 170-178 (181)
80 TIGR03654 L6_bact ribosomal pr 32.6 76 0.0016 22.8 3.7 20 60-80 11-30 (175)
81 TIGR03421 FeS_CyaY iron donor 31.6 33 0.00071 22.7 1.5 14 62-76 26-39 (102)
82 PRK10568 periplasmic protein; 29.9 87 0.0019 22.9 3.7 25 56-81 73-97 (203)
83 PRK10568 periplasmic protein; 29.2 1.1E+02 0.0024 22.3 4.2 25 56-81 152-176 (203)
84 cd00503 Frataxin Frataxin is a 29.0 38 0.00083 22.4 1.6 15 61-76 28-42 (105)
85 CHL00140 rpl6 ribosomal protei 27.7 90 0.0019 22.5 3.4 18 61-79 13-30 (178)
86 PF05862 IceA2: Helicobacter p 27.5 76 0.0016 19.1 2.5 29 61-89 27-55 (59)
87 PF12673 DUF3794: Domain of un 27.0 1.5E+02 0.0032 17.8 4.0 23 40-62 46-68 (87)
88 PF13049 DUF3910: Protein of u 26.4 1E+02 0.0022 19.8 3.1 33 38-71 5-39 (93)
89 PF09732 CactinC_cactus: Cactu 26.1 2.3E+02 0.005 19.6 5.4 47 46-93 69-116 (125)
90 PLN02355 probable galactinol-- 26.0 3.5E+02 0.0076 24.3 7.2 48 60-109 696-756 (758)
91 smart00652 eIF1a eukaryotic tr 26.0 1.5E+02 0.0033 18.7 3.9 30 44-76 23-53 (83)
92 TIGR02892 spore_yabP sporulati 25.7 68 0.0015 20.6 2.2 21 58-79 22-42 (85)
93 PF03983 SHD1: SLA1 homology d 24.7 1.3E+02 0.0028 18.7 3.2 30 41-70 14-43 (70)
94 PTZ00179 60S ribosomal protein 24.2 68 0.0015 23.5 2.3 20 60-80 12-31 (189)
95 PF07122 VLPT: Variable length 24.2 25 0.00053 18.4 -0.1 16 51-66 14-29 (30)
96 PF07944 DUF1680: Putative gly 23.2 2.4E+02 0.0053 23.4 5.6 15 84-98 480-495 (520)
97 PLN02982 galactinol-raffinose 21.8 2.3E+02 0.0049 25.8 5.2 39 61-99 805-855 (865)
98 PF04879 Molybdop_Fe4S4: Molyb 21.7 1.5E+02 0.0032 16.6 3.0 20 62-81 16-35 (55)
99 PF12080 GldM_C: GldM C-termin 20.4 1.5E+02 0.0033 21.3 3.5 26 50-76 17-42 (181)
100 TIGR02503 type_III_SycN type I 20.2 3E+02 0.0065 18.8 5.1 37 55-98 14-52 (119)
101 cd03863 M14_CPD_II The second 20.1 1.6E+02 0.0034 23.8 3.7 28 46-73 340-367 (375)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.88 E-value=9.6e-23 Score=143.44 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=61.5
Q ss_pred ccceeceEEE-CCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc------------------------------
Q 041072 35 LVLARAKWKE-TPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS------------------------------ 83 (110)
Q Consensus 35 ~~p~~vdi~e-~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~------------------------------ 83 (110)
..| ++||+| ++++|+|+++|||++|+||+|++++| +|+|+|+++.+.
T Consensus 31 ~~P-~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~~A 108 (142)
T PRK11597 31 SFP-PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVSGA 108 (142)
T ss_pred CCC-cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccCcC
Confidence 446 499998 57899999999999999999999997 899999976421
Q ss_pred -eeCcEEEEEEeCcccccCCCCeEEecC
Q 041072 84 -FRKWVLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 84 -~~~GvL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
|+||||+|+|||..+++ .++|+|+|+
T Consensus 109 ~~~nGVL~I~lPK~~~~~-~~~rkI~I~ 135 (142)
T PRK11597 109 TFVNGLLHIDLIRNEPEA-IAPQRIAIS 135 (142)
T ss_pred EEcCCEEEEEEeccCccc-cCCcEEEEC
Confidence 78999999999985432 458999985
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.85 E-value=2.5e-21 Score=135.47 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=61.3
Q ss_pred ceeceEE-ECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-------------------------------e
Q 041072 37 LARAKWK-ETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS-------------------------------F 84 (110)
Q Consensus 37 p~~vdi~-e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~-------------------------------~ 84 (110)
| ++||+ +++++|+|.++|||++|+||+|++++| +|+|+|+++.+. |
T Consensus 35 p-~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~A~~ 112 (137)
T PRK10743 35 P-PYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANL 112 (137)
T ss_pred C-cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCcCEE
Confidence 5 59999 489999999999999999999999997 999999986431 7
Q ss_pred eCcEEEEEEeCcccccCCCCeEEecC
Q 041072 85 RKWVLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 85 ~~GvL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
+||||+|+|||.++++ .++|+|+|+
T Consensus 113 ~dGVL~I~lPK~~~~~-~~~r~I~I~ 137 (137)
T PRK10743 113 VNGLLYIDLERVIPEA-KKPRRIEIN 137 (137)
T ss_pred eCCEEEEEEeCCCccc-cCCeEEeeC
Confidence 9999999999975433 468999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4e-21 Score=134.88 Aligned_cols=73 Identities=33% Similarity=0.555 Sum_probs=64.5
Q ss_pred ccceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-------------------------------
Q 041072 35 LVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS------------------------------- 83 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~------------------------------- 83 (110)
+.| ++||+|++++|.|+++|||++++||+|+++++ .|+|+|+++.+.
T Consensus 39 ~~P-~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 39 GTP-PVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCC-cEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 456 59999999999999999999999999999997 899999997521
Q ss_pred ----eeCcEEEEEEeCcccccCCCCeEEecC
Q 041072 84 ----FRKWVLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 84 ----~~~GvL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
|+||||+|+|||.++++ .++++|.|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 79999999999999764 568888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.76 E-value=3.2e-18 Score=111.52 Aligned_cols=57 Identities=54% Similarity=0.915 Sum_probs=50.9
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-----------------------------------
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------------- 83 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------------- 83 (110)
++||+|++++|+|.++|||++++||+|+++++++|+|+|+++.+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 389999999999999999999999999998755899999975321
Q ss_pred eeCcEEEEEEeC
Q 041072 84 FRKWVLRITVPK 95 (110)
Q Consensus 84 ~~~GvL~I~lpK 95 (110)
|+||||+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 799999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.74 E-value=2.1e-17 Score=108.53 Aligned_cols=69 Identities=38% Similarity=0.631 Sum_probs=58.8
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--c-------------------------------eeCc
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--S-------------------------------FRKW 87 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--~-------------------------------~~~G 87 (110)
||.|++++|.|.++|||+++++|+|+++++ .|+|+|++... . |+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 899999999999999999999999999997 89999999811 0 6899
Q ss_pred EEEEEEeCcccccCCCCeEEecC
Q 041072 88 VLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 88 vL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
+|+|++||....+...+++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999998765579999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.69 E-value=8.5e-17 Score=104.65 Aligned_cols=56 Identities=30% Similarity=0.589 Sum_probs=51.0
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--------c---------------------------
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--------S--------------------------- 83 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--------~--------------------------- 83 (110)
++||+|++++|+|.++|||++++||+|+++++ .|+|+|+++.. .
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLPNVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECCCCCHHHCEE
Confidence 48999999999999999999999999999997 89999998631 0
Q ss_pred -eeCcEEEEEEeC
Q 041072 84 -FRKWVLRITVPK 95 (110)
Q Consensus 84 -~~~GvL~I~lpK 95 (110)
|+||||+|++||
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 799999999998
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.67 E-value=1.8e-16 Score=102.78 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=49.2
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEEE
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLRI 91 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~I 91 (110)
+|++++++|.|.++|||++++||+|++.++ .|+|+|++.... | +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 799999999999999999999999999997 999999875321 6 7999999
Q ss_pred EEeC
Q 041072 92 TVPK 95 (110)
Q Consensus 92 ~lpK 95 (110)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 8
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.67 E-value=2.4e-16 Score=102.59 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=50.2
Q ss_pred eceEEECC-CcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc--------------------------------ee
Q 041072 39 RAKWKETP-PAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS--------------------------------FR 85 (110)
Q Consensus 39 ~vdi~e~~-~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~--------------------------------~~ 85 (110)
++||+|++ ++|+|.++|||++|+||+|+++++ .|+|+|+++.+. |+
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~~A~~~ 80 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVKGAELE 80 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceECeeEEe
Confidence 49999975 999999999999999999999997 899999976432 79
Q ss_pred CcEEEEEEeC
Q 041072 86 KWVLRITVPK 95 (110)
Q Consensus 86 ~GvL~I~lpK 95 (110)
||||+|+||+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 9999999985
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.64 E-value=7.5e-16 Score=99.19 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=48.0
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEEE
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLRI 91 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~I 91 (110)
.+.+++++|.|.++||||+++||+|++.++ .|+|+|++.... | +||||+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 367899999999999999999999999997 899999875321 5 6999999
Q ss_pred EEeC
Q 041072 92 TVPK 95 (110)
Q Consensus 92 ~lpK 95 (110)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.64 E-value=6.1e-16 Score=99.55 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=49.4
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-------------------------e-eCcEEEEEEe
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS-------------------------F-RKWVLRITVP 94 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~-------------------------~-~~GvL~I~lp 94 (110)
||.|++++|.|.+||||++++||+|++++| .|+|+|+++.+. | +||||+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 789999999999999999999999999997 999999986532 4 8999999998
Q ss_pred C
Q 041072 95 K 95 (110)
Q Consensus 95 K 95 (110)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 6
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.62 E-value=1.6e-15 Score=98.38 Aligned_cols=54 Identities=13% Similarity=0.373 Sum_probs=49.4
Q ss_pred ceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------ee-CcEEE
Q 041072 40 AKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------FR-KWVLR 90 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~~-~GvL~ 90 (110)
.||+|++++|.|.++|||+++++|+|++.++ .|+|+|+++... |+ ||||+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 5999999999999999999999999999997 899999987422 66 99999
Q ss_pred EEEe
Q 041072 91 ITVP 94 (110)
Q Consensus 91 I~lp 94 (110)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 12
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.61 E-value=2.2e-15 Score=97.35 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=47.8
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------ee-CcEEEEE
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------FR-KWVLRIT 92 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~~-~GvL~I~ 92 (110)
+.+++++|.|.++||||+++||+|++.++ .|+|+|++..+. |+ ||||+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 56789999999999999999999999997 999999875421 75 9999999
Q ss_pred EeCc
Q 041072 93 VPKL 96 (110)
Q Consensus 93 lpK~ 96 (110)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.55 E-value=1.3e-14 Score=93.60 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=45.8
Q ss_pred EECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------ee-CcEEEEEE
Q 041072 43 KETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------FR-KWVLRITV 93 (110)
Q Consensus 43 ~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~~-~GvL~I~l 93 (110)
.-++++|.|.++|||++++||+|+++++ .|+|+|+++... |. ||||+|++
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence 4578999999999999999999999997 999999985321 64 99999999
Q ss_pred eC
Q 041072 94 PK 95 (110)
Q Consensus 94 pK 95 (110)
||
T Consensus 82 Pr 83 (83)
T cd06476 82 PR 83 (83)
T ss_pred cC
Confidence 97
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.48 E-value=9.7e-14 Score=90.14 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=45.0
Q ss_pred ECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc--------------------------------e-eCcEEE
Q 041072 44 ETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS--------------------------------F-RKWVLR 90 (110)
Q Consensus 44 e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~--------------------------------~-~~GvL~ 90 (110)
+..++|.|.++|||++++||+|+++++ .|+|+|++..+. | +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 567899999999999999999999996 899999975321 6 899999
Q ss_pred EEEeC
Q 041072 91 ITVPK 95 (110)
Q Consensus 91 I~lpK 95 (110)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.47 E-value=1.4e-13 Score=88.92 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=45.1
Q ss_pred EECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEEEEE
Q 041072 43 KETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLRITV 93 (110)
Q Consensus 43 ~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~I~l 93 (110)
-|++++|.|+++|||++|+||+|+++++ .|+|+|+++.+. | +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 4789999999999999999999999997 999999986531 4 799999986
Q ss_pred e
Q 041072 94 P 94 (110)
Q Consensus 94 p 94 (110)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 5
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.46 E-value=1.4e-13 Score=88.01 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=43.5
Q ss_pred CCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------eeC-cEEEEEEeC
Q 041072 46 PPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------FRK-WVLRITVPK 95 (110)
Q Consensus 46 ~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~~~-GvL~I~lpK 95 (110)
.++|.|.++||||+++||+|+++++ .|+|+|+++... |.| |||+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 3699999999999999999999996 899999987531 577 999999997
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.45 E-value=3.1e-13 Score=85.34 Aligned_cols=54 Identities=44% Similarity=0.663 Sum_probs=48.6
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC---------------c-------------------eeC
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS---------------S-------------------FRK 86 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~---------------~-------------------~~~ 86 (110)
|+.|++++|.+.++|||+++++|+|++.++ .|.|+|++... . |+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 578999999999999999999999999996 89999998732 0 689
Q ss_pred cEEEEEEeC
Q 041072 87 WVLRITVPK 95 (110)
Q Consensus 87 GvL~I~lpK 95 (110)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 18
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.1e-12 Score=96.61 Aligned_cols=72 Identities=39% Similarity=0.609 Sum_probs=61.7
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-----------------------------------
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------------- 83 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------------- 83 (110)
.+|+.|++++|.+.+++||+++++++|+++++++|+|+|++..+.
T Consensus 86 ~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ik 165 (196)
T KOG0710|consen 86 PWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIK 165 (196)
T ss_pred CcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHH
Confidence 488899999999999999999999999999976899999987432
Q ss_pred --eeCcEEEEEEeCcccc-cCCCCeEEecC
Q 041072 84 --FRKWVLRITVPKLSEE-KKRHPKVINID 110 (110)
Q Consensus 84 --~~~GvL~I~lpK~~~~-~~~~~r~I~I~ 110 (110)
|+||||+|++||..+. ++...+.|.|+
T Consensus 166 A~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 166 AEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHhhCCeEEEEEecccccccCCccceeecc
Confidence 5899999999999974 33567777763
No 19
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.34 E-value=3.1e-12 Score=83.33 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=33.4
Q ss_pred CCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecC
Q 041072 45 TPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 45 ~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
++++|+|.+||||++|+||+|++++| +|+|+|+++.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~ 41 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAEREN 41 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEec
Confidence 57899999999999999999999997 8999999864
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.05 E-value=4.6e-10 Score=73.73 Aligned_cols=51 Identities=10% Similarity=0.333 Sum_probs=44.9
Q ss_pred EECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEEEEE
Q 041072 43 KETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLRITV 93 (110)
Q Consensus 43 ~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~I~l 93 (110)
..+++.|.|.+|+.||++|||+|++.++ .|+|+|+++... + +||+|+|.+
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4578899999999999999999999997 899999987542 2 499999998
Q ss_pred e
Q 041072 94 P 94 (110)
Q Consensus 94 p 94 (110)
|
T Consensus 90 P 90 (91)
T cd06480 90 P 90 (91)
T ss_pred C
Confidence 8
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.99 E-value=2.4e-09 Score=64.80 Aligned_cols=53 Identities=43% Similarity=0.797 Sum_probs=46.7
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--------c-------------------eeCcEEEEEEe
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--------S-------------------FRKWVLRITVP 94 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--------~-------------------~~~GvL~I~lp 94 (110)
|.++++.|.|++++||+.+++++|.+.++ .|.|+|++... . |.+|+|+|.+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 57889999999999999999999999996 89999987521 1 68899999999
Q ss_pred C
Q 041072 95 K 95 (110)
Q Consensus 95 K 95 (110)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.90 E-value=3.7e-09 Score=65.99 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=47.1
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc---------------eeCcEEEEEEeCccc
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS---------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~---------------~~~GvL~I~lpK~~~ 98 (110)
|.++++.+.|++++||+++++++|+++++ .|+|+|+.-.-. +.+|.|+|+|+|.++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 57899999999999999999999999997 899988321100 689999999999874
No 23
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8e-09 Score=74.94 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=60.7
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-------------e----------------eCcEE
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS-------------F----------------RKWVL 89 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~-------------~----------------~~GvL 89 (110)
..++..+.+.|.|.+|+..|++++|+|.+.++ .|.|.|++...+ | .||||
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvL 142 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVL 142 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceE
Confidence 47888999999999999999999999999997 999999988652 1 68999
Q ss_pred EEEEeCcccccCCCCeEEecC
Q 041072 90 RITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 90 ~I~lpK~~~~~~~~~r~I~I~ 110 (110)
+|..||.+..+. ..|.|+|.
T Consensus 143 tI~ap~~~~~~~-~er~ipI~ 162 (173)
T KOG3591|consen 143 TIEAPKPPPKQD-NERSIPIE 162 (173)
T ss_pred EEEccCCCCcCc-cceEEeEe
Confidence 999999987542 58888874
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.85 E-value=1.3e-08 Score=74.04 Aligned_cols=62 Identities=19% Similarity=0.406 Sum_probs=49.0
Q ss_pred eceEEECCC-cEEEEEEeCCCCCCc-eEEEEecC-eEEEEEEEecC-Cc--------------eeCcEEEEEEeCccccc
Q 041072 39 RAKWKETPP-AQVITLDILGIKKDN-VKIEVEEN-RVLRMRGERKS-SS--------------FRKWVLRITVPKLSEEK 100 (110)
Q Consensus 39 ~vdi~e~~~-~~~i~~dlPG~~ked-i~i~v~~~-~~L~I~g~~~~-~~--------------~~~GvL~I~lpK~~~~~ 100 (110)
.+++.+.++ +++|.|||||+++++ |+|.++.+ ..|+|+...+. ++ |+||||+|+|-+.+++.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCCC
Confidence 689999888 699999999999998 99999843 36777644321 11 89999999999987643
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.61 E-value=2.7e-07 Score=57.05 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=47.7
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecC-Cc-------------------eeCcEEEEEEeCccc
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKS-SS-------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~-~~-------------------~~~GvL~I~lpK~~~ 98 (110)
|.++++.+.|.+.+||+.+++++|.+.++ .|+|++.... .. +++|.|+|+|+|..+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 57899999999999999999999999996 7999876531 11 579999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.43 E-value=9.8e-07 Score=55.47 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=48.1
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEec-CCc-------------------eeCcEEEEEEeCccc
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERK-SSS-------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~-~~~-------------------~~~GvL~I~lpK~~~ 98 (110)
||+++++.+.|++.+||+.+++++|.++++ .|+|++... ... +.+|.|+|+|.|..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC
Confidence 789999999999999999999999999996 788876532 111 478999999999874
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.01 E-value=9.1e-05 Score=45.28 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=44.3
Q ss_pred eceEEECCCcEEEEEEeCCC--CCCceEEEEecCeEEEEEEEecC-Cc-------------------eeCcEEEEEEeC
Q 041072 39 RAKWKETPPAQVITLDILGI--KKDNVKIEVEENRVLRMRGERKS-SS-------------------FRKWVLRITVPK 95 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~--~kedi~i~v~~~~~L~I~g~~~~-~~-------------------~~~GvL~I~lpK 95 (110)
+++|.++++.+.|++.+++. ++++++|++.++ .|+|+..... .. ..++-|.|+|.|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 58999999999999999665 599999999997 7888865332 11 467899998876
No 28
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.77 E-value=0.00023 Score=44.76 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=46.8
Q ss_pred ceEEECCCcEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC---C-c-------------eeC-cEEEEEEeCccc
Q 041072 40 AKWKETPPAQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS---S-S-------------FRK-WVLRITVPKLSE 98 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~---~-~-------------~~~-GvL~I~lpK~~~ 98 (110)
+.|.++++.+.|++.+| |+.++|+++++.++ .|+|+..... . . ..+ ..|.|+|+|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 47999999999999997 78999999999997 6888764211 1 0 367 899999999875
No 29
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.75 E-value=0.00019 Score=45.78 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=45.7
Q ss_pred ceEEECCCcEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC---C-c-----------e--eCc-EEEEEEeCccc
Q 041072 40 AKWKETPPAQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS---S-S-----------F--RKW-VLRITVPKLSE 98 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~---~-~-----------~--~~G-vL~I~lpK~~~ 98 (110)
++|.++.+.+.|++.+| |++++|++|++..+ .|+|...... . . | ++| .|.|+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 47999999999999996 99999999999987 6777643111 1 0 3 466 79999999875
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.65 E-value=0.00048 Score=45.64 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=46.6
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecC--Cc-------------------eeCcEEEEEEeCcc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKS--SS-------------------FRKWVLRITVPKLS 97 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~--~~-------------------~~~GvL~I~lpK~~ 97 (110)
+++|+++.+.+.|++.+||+ ++++|.+..+ .|.|++.... .. +.++-|.|+|.|..
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 58999999999999999998 8899999997 7888864321 10 46799999999987
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.59 E-value=0.00039 Score=43.97 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=45.9
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC-c-------------------eeCcEEEEEEeCccc
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS-S-------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~-~-------------------~~~GvL~I~lpK~~~ 98 (110)
||+++++.+.|++.++|+.++++.|++.++ .|++++..... . ...+-+.|+|.|.+.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC
Confidence 789999999999999999999999999997 78887654211 1 146678889888753
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.39 E-value=0.0019 Score=41.26 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=47.1
Q ss_pred eceEEECCCcEEEEEEeCCCCC---CceEEEEecCeEEEEEEEecCC-c--------------------eeCcEEEEEEe
Q 041072 39 RAKWKETPPAQVITLDILGIKK---DNVKIEVEENRVLRMRGERKSS-S--------------------FRKWVLRITVP 94 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~k---edi~i~v~~~~~L~I~g~~~~~-~--------------------~~~GvL~I~lp 94 (110)
.++|.++++.+.|++.+|+..+ ++++|++..+ .|.|++..... . ...+-+.|+|.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 4799999999999999999987 9999999987 78887632110 0 25677999999
Q ss_pred Cccc
Q 041072 95 KLSE 98 (110)
Q Consensus 95 K~~~ 98 (110)
|.++
T Consensus 82 K~~~ 85 (92)
T cd06468 82 KKKE 85 (92)
T ss_pred eCCC
Confidence 8874
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.22 E-value=0.0039 Score=39.88 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=46.1
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC-c-------------------eeCcEEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS-S-------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~-~-------------------~~~GvL~I~lpK~~~ 98 (110)
+.||+++++.+.|++.+.|+.++++++.++++ .|+++..-... . ...+-+.|+|.|+++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 47999999999999999999999999999886 67775322211 1 246778888888764
No 34
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.09 E-value=0.0043 Score=40.65 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=45.9
Q ss_pred eceEEECCCcEEEEEEeC-CCCCCceEEEEecCeEEEEE--EEecCC-c-------------eeCc-EEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDIL-GIKKDNVKIEVEENRVLRMR--GERKSS-S-------------FRKW-VLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~--g~~~~~-~-------------~~~G-vL~I~lpK~~~ 98 (110)
.+.|.+|.+++.|++.+| |+++.|++|.+..+ .|+|. |+.-.+ + .++| +|.|+|.|...
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g~~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKGQEVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECCEEEEcCcccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence 589999999999999887 89999999999997 67765 432111 1 3555 58999999863
No 35
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.73 E-value=0.0093 Score=43.88 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=36.8
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEec
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~ 80 (110)
+.||+++++..+|++..+|+.++|+.|++.++ +|.+.-+-.
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~ 45 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLP 45 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecC
Confidence 58999999999999999999999999999986 788775553
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.47 E-value=0.011 Score=39.64 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=34.4
Q ss_pred eeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEe
Q 041072 38 ARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 38 ~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~ 79 (110)
+.++|.+..+.+.|++++|+ .+|++|+++++ .|+++|..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~ 40 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLN 40 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEEC
Confidence 36999999999999999999 57999999997 79998843
No 37
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=96.31 E-value=0.013 Score=45.13 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=38.7
Q ss_pred CCcEEEEEEeCCC-CCCceEEEEecCeEEEEEEEec-CC----------------ce--eCcEEEEEEe
Q 041072 46 PPAQVITLDILGI-KKDNVKIEVEENRVLRMRGERK-SS----------------SF--RKWVLRITVP 94 (110)
Q Consensus 46 ~~~~~i~~dlPG~-~kedi~i~v~~~~~L~I~g~~~-~~----------------~~--~~GvL~I~lp 94 (110)
.+.++|+++|||+ +..+|+|.|.+. .|.|..... +. .| +.++|+|+||
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 6889999999999 889999999997 788876662 11 03 5699999988
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.41 E-value=0.082 Score=41.81 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=35.2
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEE
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRG 77 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g 77 (110)
+.||+++++.++|++.+.|+.++++.|++.++ .|+|+-
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~ 195 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVI 195 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEE
Confidence 68999999999999999999999999999997 788764
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.41 E-value=0.11 Score=33.31 Aligned_cols=57 Identities=12% Similarity=0.344 Sum_probs=42.1
Q ss_pred eEEECCCcEEEEEEeC---CCCCCceEEEEecCeEEEEEEEecC---C----------c----eeCc-EEEEEEeCccc
Q 041072 41 KWKETPPAQVITLDIL---GIKKDNVKIEVEENRVLRMRGERKS---S----------S----FRKW-VLRITVPKLSE 98 (110)
Q Consensus 41 di~e~~~~~~i~~dlP---G~~kedi~i~v~~~~~L~I~g~~~~---~----------~----~~~G-vL~I~lpK~~~ 98 (110)
-|.+|.+++.|++.+| |+++.|++|.+..+ .|+|.-.... + + .++| .|.|+|-|...
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCC
Confidence 4778899999999995 38899999999986 5666532111 0 1 3675 89999999864
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.93 E-value=0.24 Score=32.96 Aligned_cols=58 Identities=10% Similarity=0.248 Sum_probs=43.3
Q ss_pred eceEEECCCcEEEEEEeC-CC-CCCceEEEEecCeEEEEEEEe--cC----C----------c----eeCcE-EEEEEeC
Q 041072 39 RAKWKETPPAQVITLDIL-GI-KKDNVKIEVEENRVLRMRGER--KS----S----------S----FRKWV-LRITVPK 95 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlP-G~-~kedi~i~v~~~~~L~I~g~~--~~----~----------~----~~~Gv-L~I~lpK 95 (110)
.+-|.+|.+++.|++.+| |. +..|++|++..+ .|.|.-.. .. + + .++|- |.|+|-|
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K 84 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSK 84 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEE
Confidence 478999999999999999 54 578999999986 56665321 10 0 0 36754 8999999
Q ss_pred cc
Q 041072 96 LS 97 (110)
Q Consensus 96 ~~ 97 (110)
..
T Consensus 85 ~~ 86 (102)
T cd06495 85 CS 86 (102)
T ss_pred CC
Confidence 85
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=92.26 E-value=0.43 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=27.6
Q ss_pred ceEEECCCcEEEEEEeCC--CCCCceEEEEecCeEEEEE
Q 041072 40 AKWKETPPAQVITLDILG--IKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG--~~kedi~i~v~~~~~L~I~ 76 (110)
.||+++++.++|++...+ ..++++.+....+ .|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~ 38 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVE 38 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEE
Confidence 489999999999999996 4555555665664 68776
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=83.76 E-value=2.7 Score=26.80 Aligned_cols=30 Identities=7% Similarity=0.261 Sum_probs=25.9
Q ss_pred cEEEEEEeC-CCCCCceEEEE-ecCeEEEEEEE
Q 041072 48 AQVITLDIL-GIKKDNVKIEV-EENRVLRMRGE 78 (110)
Q Consensus 48 ~~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~ 78 (110)
.|.=++.|| +++.+.|+-.+ ++| +|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEEec
Confidence 677789999 79999999998 565 9999974
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=82.13 E-value=2.4 Score=27.28 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=7.1
Q ss_pred ceEEECCCcEEEEEE
Q 041072 40 AKWKETPPAQVITLD 54 (110)
Q Consensus 40 vdi~e~~~~~~i~~d 54 (110)
++|.=.++.+.|+++
T Consensus 24 I~V~v~~~~L~I~ge 38 (87)
T cd06482 24 VKVKVKDGKVQVSAE 38 (87)
T ss_pred eEEEEECCEEEEEEE
Confidence 444444444555544
No 44
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=80.34 E-value=3 Score=26.37 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.5
Q ss_pred CcEEEEEEeCCCCCCceEEEEecCeEEEEEE
Q 041072 47 PAQVITLDILGIKKDNVKIEVEENRVLRMRG 77 (110)
Q Consensus 47 ~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g 77 (110)
..|.-.+.+|.+..+.++-++.+| +|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 456667889999999999999996 999973
No 45
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=78.16 E-value=3.3 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=27.2
Q ss_pred CCcEEEEEEeC-CCCCCceEEEE-ecCeEEEEEEE
Q 041072 46 PPAQVITLDIL-GIKKDNVKIEV-EENRVLRMRGE 78 (110)
Q Consensus 46 ~~~~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~ 78 (110)
...|.=.+.|| +++.+.|+-++ .+| +|+|+.-
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~P 86 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIRAP 86 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCc-eEEEEcC
Confidence 46788899999 69999999999 675 9999864
No 46
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=75.63 E-value=4.9 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCcEEEEEEeC-CCCCCceEEEEecCeEEEEEE
Q 041072 46 PPAQVITLDIL-GIKKDNVKIEVEENRVLRMRG 77 (110)
Q Consensus 46 ~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g 77 (110)
...|.-++.|| +++.+.++-++++| +|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45888899999 48899999999996 999973
No 47
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=71.83 E-value=12 Score=23.59 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.4
Q ss_pred CcEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC
Q 041072 47 PAQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 47 ~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
..|.-++.|| ++..+.++-.+++| +|+|...+..
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~ 89 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKE 89 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSS
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEccc
Confidence 4677789999 58899999999886 9999987664
No 48
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=71.49 E-value=7 Score=24.54 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.5
Q ss_pred EEEEEEeC-CCCCCceEEEEe-cCeEEEEEEE
Q 041072 49 QVITLDIL-GIKKDNVKIEVE-ENRVLRMRGE 78 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v~-~~~~L~I~g~ 78 (110)
|.=++.|| +++.+.|+-++. +| +|+|+.-
T Consensus 52 f~R~~~LP~~vd~~~i~A~~~~dG-vL~I~~P 82 (83)
T cd06478 52 FHRRYRLPPGVDPAAITSSLSADG-VLTISGP 82 (83)
T ss_pred EEEEEECCCCcChHHeEEEECCCC-EEEEEec
Confidence 77789998 599999999995 65 9999863
No 49
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=71.45 E-value=7.7 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.7
Q ss_pred EEEEEEeC-CCCCCceEEEEe-cCeEEEEEEEe
Q 041072 49 QVITLDIL-GIKKDNVKIEVE-ENRVLRMRGER 79 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v~-~~~~L~I~g~~ 79 (110)
|.=++.|| +++.+.|+-+++ +| +|+|+.-+
T Consensus 52 F~R~~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 52 FQRKYRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred EEEEEECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 77788998 699999999996 75 99998755
No 50
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=70.64 E-value=15 Score=21.84 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=29.9
Q ss_pred ceEE-ECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEE
Q 041072 40 AKWK-ETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGE 78 (110)
Q Consensus 40 vdi~-e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~ 78 (110)
+.+. =..+.|.|++..||+....-.|.+..+....|..+
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 4555 34789999999999999888888886656666543
No 51
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=70.00 E-value=8.3 Score=23.89 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=26.6
Q ss_pred CcEEEEEEeCC-CCCCceEEEEecCeEEEEEEE
Q 041072 47 PAQVITLDILG-IKKDNVKIEVEENRVLRMRGE 78 (110)
Q Consensus 47 ~~~~i~~dlPG-~~kedi~i~v~~~~~L~I~g~ 78 (110)
.+|.-++.||. ++.+.++-.+.++|+|+|+..
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 46788899995 899999999998349999864
No 52
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=68.76 E-value=11 Score=23.73 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.9
Q ss_pred EEEEEEeC-CCCCCceEEEEe-cCeEEEEEEE
Q 041072 49 QVITLDIL-GIKKDNVKIEVE-ENRVLRMRGE 78 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v~-~~~~L~I~g~ 78 (110)
|.=++.|| +++.+.|+-.+. +| +|+|+.-
T Consensus 52 F~R~~~LP~~vd~~~v~A~~~~dG-vL~I~~P 82 (83)
T cd06476 52 FTRTYILPMDVDPLLVRASLSHDG-ILCIQAP 82 (83)
T ss_pred EEEEEECCCCCChhhEEEEecCCC-EEEEEec
Confidence 67789999 699999999997 65 9999853
No 53
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=67.72 E-value=13 Score=24.14 Aligned_cols=31 Identities=6% Similarity=0.069 Sum_probs=25.5
Q ss_pred CcEEEEEEeC-CCCCCceEEEEecCeEEEEEE
Q 041072 47 PAQVITLDIL-GIKKDNVKIEVEENRVLRMRG 77 (110)
Q Consensus 47 ~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g 77 (110)
.+|.=++.|| |++.++|+=.+..+|+|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4566678898 799999999999445999986
No 54
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=67.32 E-value=14 Score=21.38 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCCCCCceEEEEecCeEEEEEEEecCC
Q 041072 56 LGIKKDNVKIEVEENRVLRMRGERKSS 82 (110)
Q Consensus 56 PG~~kedi~i~v~~~~~L~I~g~~~~~ 82 (110)
+++...+|+|.+.++ .++++|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 367777899999997 89999998653
No 55
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=64.10 E-value=8.8 Score=24.60 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=14.8
Q ss_pred CCCCceEEEEecCeEEEEEEEe
Q 041072 58 IKKDNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 58 ~~kedi~i~v~~~~~L~I~g~~ 79 (110)
++.+.|.++...+ .|+|+|+.
T Consensus 41 y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 41 FSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred ECCCEEEEEcCce-EEEEEccc
Confidence 4667777777775 77777765
No 56
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=62.58 E-value=31 Score=20.57 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.6
Q ss_pred CcEEEEEEeCC-CCCCceEEEEecCeEEEEEEEec
Q 041072 47 PAQVITLDILG-IKKDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 47 ~~~~i~~dlPG-~~kedi~i~v~~~~~L~I~g~~~ 80 (110)
+.|.+.+++|+ +.+++.+..+.++ .|.|+=.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 67889999998 6999999999996 788885544
No 57
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.08 E-value=21 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=37.8
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecC
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.+|+.+|.....|-+.-|-++.++|++-++.| +|.|+-+...
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~ 219 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRR 219 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccc
Confidence 58999999999999999999999999999997 9999876553
No 58
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=61.79 E-value=15 Score=23.08 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=25.4
Q ss_pred CcEEEEEEeCC-CCCCceEEEE-ecCeEEEEEEEe
Q 041072 47 PAQVITLDILG-IKKDNVKIEV-EENRVLRMRGER 79 (110)
Q Consensus 47 ~~~~i~~dlPG-~~kedi~i~v-~~~~~L~I~g~~ 79 (110)
..|.=++.||. ++.+.|+-++ ++| +|+|+..|
T Consensus 48 g~F~R~~~LP~~vd~e~v~A~l~~~G-vL~I~~~~ 81 (81)
T cd06479 48 NTFTHKCQLPEDVDPTSVSSSLGEDG-TLTIKARR 81 (81)
T ss_pred EEEEEEEECCCCcCHHHeEEEecCCC-EEEEEecC
Confidence 35666788876 8999999998 675 99998754
No 59
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=56.30 E-value=31 Score=21.84 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.1
Q ss_pred eeCcEEEEEEeCc
Q 041072 84 FRKWVLRITVPKL 96 (110)
Q Consensus 84 ~~~GvL~I~lpK~ 96 (110)
++||-.++++-+.
T Consensus 74 ~kDgk~r~~~~~i 86 (91)
T PF14730_consen 74 CKDGKYRLTITNI 86 (91)
T ss_pred EECCEEEEEEEEE
Confidence 5788888777543
No 60
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=54.00 E-value=66 Score=21.72 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=35.2
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC---c-e------eCcEEEEEEeCcc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS---S-F------RKWVLRITVPKLS 97 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~---~-~------~~GvL~I~lpK~~ 97 (110)
.+.|...++ ..++++. ..+.++++.+++ +|.|+.+.... . | .+.-|+|+||+..
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~ 130 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDY 130 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccccccceEEEcccCCCcEEEEEECCCC
Confidence 466666543 4445555 222688888886 99999873221 1 1 4688999999975
No 61
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=52.22 E-value=47 Score=22.90 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=31.7
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCceeCcEEEEEEeCc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSSFRKWVLRITVPKL 96 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~~~~GvL~I~lpK~ 96 (110)
.+.+... +.+.++++.|----+.++++++++ +|.|.-++.....+.=.++|+.|..
T Consensus 12 ~V~l~~g-~~~~v~v~~~~~l~~~i~~~v~~g-~L~I~~~~~~~~~~~~~v~V~~~~L 67 (181)
T PF10988_consen 12 EVELVQG-DSPSVEVEADENLLDRIKVEVKDG-TLKISYKKNISGSKPVKVRVTAPSL 67 (181)
T ss_dssp EEEEEE--SS-EEEEEEEHHHHCCEEEEEETT-EEEEEE-SCCTCTSTEEEEEEES--
T ss_pred EEEEEEC-CCcEEEEEEChhhcceEEEEEECC-EEEEEECCCcCCCccEEEEEEcCcc
Confidence 4566665 445777777764457899999886 8999876433221223455555543
No 62
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=50.60 E-value=23 Score=25.44 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=7.6
Q ss_pred eeCcEEEEE
Q 041072 84 FRKWVLRIT 92 (110)
Q Consensus 84 ~~~GvL~I~ 92 (110)
|+||.|.|.
T Consensus 170 ~~~g~~~L~ 178 (187)
T PF05309_consen 170 YRNGRLWLK 178 (187)
T ss_pred EeCCEEEEe
Confidence 689999886
No 63
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=47.92 E-value=11 Score=26.89 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=10.0
Q ss_pred eeCcEEEEEEe
Q 041072 84 FRKWVLRITVP 94 (110)
Q Consensus 84 ~~~GvL~I~lp 94 (110)
|.||||||.|+
T Consensus 78 y~~GVLTl~lg 88 (156)
T KOG3413|consen 78 YADGVLTLKLG 88 (156)
T ss_pred cccceEEEEec
Confidence 88999999988
No 64
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=46.78 E-value=45 Score=18.23 Aligned_cols=35 Identities=17% Similarity=0.474 Sum_probs=22.9
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEE
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~ 76 (110)
|..++++-.+.+.+-..+-+.+.|+..+|..++|+
T Consensus 5 WvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 5 WVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEE
T ss_pred EEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 34455555566666666777788888776566664
No 65
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=45.38 E-value=85 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=30.6
Q ss_pred ccceeceEEECCCcEEEEEEeCCC-----CCCceEEEEecCeEEEEE
Q 041072 35 LVLARAKWKETPPAQVITLDILGI-----KKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlPG~-----~kedi~i~v~~~~~L~I~ 76 (110)
..| .|.|+++++.|.|++--+.- +++...|.-+++ .|-|.
T Consensus 24 ~~P-~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKP-DVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCC-CEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 357 59999999999998876664 667777776675 67775
No 66
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=44.83 E-value=1.1e+02 Score=24.08 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=33.5
Q ss_pred cceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEE
Q 041072 36 VLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 36 ~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~ 76 (110)
.+-+.||.+|+..++|.+..-|.-++.-.|+.+.- .|.|.
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ 252 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVS 252 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEE
Confidence 34468999999999999999999999888888774 67665
No 67
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=43.51 E-value=66 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=23.2
Q ss_pred CcEEEEEEeCC-CCCCceEEEEecCeEEEEEEEec
Q 041072 47 PAQVITLDILG-IKKDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 47 ~~~~i~~dlPG-~~kedi~i~v~~~~~L~I~g~~~ 80 (110)
..|.-++.||. ++.+.++-++.+| +|+|+=.+.
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~ 133 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKA 133 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEecc
Confidence 34455566665 5667789999996 999986554
No 68
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=42.89 E-value=38 Score=23.53 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCCCCceEEEEecCeEEEEEEEecCC
Q 041072 56 LGIKKDNVKIEVEENRVLRMRGERKSS 82 (110)
Q Consensus 56 PG~~kedi~i~v~~~~~L~I~g~~~~~ 82 (110)
.|....+++|.+++| +++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888899999986 99999997753
No 69
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=26 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.270 Sum_probs=23.7
Q ss_pred eC-CCCCCceEEEEecCeEEEEEEEecCC
Q 041072 55 IL-GIKKDNVKIEVEENRVLRMRGERKSS 82 (110)
Q Consensus 55 lP-G~~kedi~i~v~~~~~L~I~g~~~~~ 82 (110)
|| |++++.|.=++..+|+|+|++.+...
T Consensus 123 LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 123 LPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred CCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 44 79999999999877799999887764
No 70
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=41.09 E-value=48 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=31.8
Q ss_pred ceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEE
Q 041072 40 AKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~ 76 (110)
+-|-+.++.+.+.+.|-|+..|++++++..+ .|-+.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~ 112 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLK 112 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeee
Confidence 6688899999999999999999999999996 66665
No 71
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=54 Score=24.10 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=34.3
Q ss_pred ceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC
Q 041072 37 LARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS 82 (110)
Q Consensus 37 p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~ 82 (110)
||.|-|.+..+-+++++.++-. .+.+|.++.. .|+++|.....
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~-~l~fs~k~~~d 49 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPS-KLTFSCKSGAD 49 (180)
T ss_pred CCcchhhhhcCeEEEEEEeccC--ccceeecccc-EEEEEeccCCC
Confidence 4469999999999999999854 5667777785 89999887643
No 72
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.76 E-value=80 Score=20.85 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=26.4
Q ss_pred ceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEE
Q 041072 40 AKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRG 77 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g 77 (110)
+++.+.+| .|.+-.||+++ |.|..+++ .|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~k-kL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPENK-KLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEecccc-eEEEec
Confidence 67888887 78889999975 67777775 788887
No 73
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=39.29 E-value=31 Score=20.72 Aligned_cols=21 Identities=14% Similarity=0.547 Sum_probs=16.2
Q ss_pred CCCCceEEEEecCeEEEEEEEe
Q 041072 58 IKKDNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 58 ~~kedi~i~v~~~~~L~I~g~~ 79 (110)
++.+.|.++...+ .|+|+|+.
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECce
Confidence 4667788888775 88898885
No 74
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=38.66 E-value=37 Score=20.18 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=21.4
Q ss_pred CcEEEEEEeCCCCCCce-EEEEecCeEEEE
Q 041072 47 PAQVITLDILGIKKDNV-KIEVEENRVLRM 75 (110)
Q Consensus 47 ~~~~i~~dlPG~~kedi-~i~v~~~~~L~I 75 (110)
+.|.|.+..+|+..... .|.+..+....+
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 78999999999998887 588886544433
No 75
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=38.11 E-value=56 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=18.4
Q ss_pred ceEEEEecCeEEEEEEEecCCceeCcEEEEEEeCccc
Q 041072 62 NVKIEVEENRVLRMRGERKSSSFRKWVLRITVPKLSE 98 (110)
Q Consensus 62 di~i~v~~~~~L~I~g~~~~~~~~~GvL~I~lpK~~~ 98 (110)
+++++..+| +|+|+ +.||. +.|-|.++
T Consensus 29 d~D~e~~~g-VLtl~-------~~~gt--~VINkQ~p 55 (103)
T PRK01379 29 SIDVDLQGD-ILNLD-------TDKGI--YVINKQSA 55 (103)
T ss_pred ceeeeccCC-EEEEE-------eCCcE--EEEeCCCh
Confidence 577777775 89888 55664 55666654
No 76
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=37.53 E-value=45 Score=24.43 Aligned_cols=10 Identities=10% Similarity=-0.160 Sum_probs=8.3
Q ss_pred eeCcEEEEEE
Q 041072 84 FRKWVLRITV 93 (110)
Q Consensus 84 ~~~GvL~I~l 93 (110)
|++|.|.+.=
T Consensus 170 y~~G~l~L~~ 179 (188)
T PRK13726 170 RENGVTWLDN 179 (188)
T ss_pred EcCCEEEEEE
Confidence 7999999863
No 77
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=37.26 E-value=23 Score=23.22 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=6.0
Q ss_pred eeCcEEEEEEe
Q 041072 84 FRKWVLRITVP 94 (110)
Q Consensus 84 ~~~GvL~I~lp 94 (110)
+.+|||+|+++
T Consensus 33 ~~~gVLti~~~ 43 (97)
T TIGR03422 33 YSSGVLTLELP 43 (97)
T ss_pred cCCCEEEEEEC
Confidence 34556655554
No 78
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=36.15 E-value=91 Score=27.88 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=28.7
Q ss_pred ceEEEEecCeEEEEEEEecCCc-----------eeCcEEEEEEeCcccccCCCCeEEec
Q 041072 62 NVKIEVEENRVLRMRGERKSSS-----------FRKWVLRITVPKLSEEKKRHPKVINI 109 (110)
Q Consensus 62 di~i~v~~~~~L~I~g~~~~~~-----------~~~GvL~I~lpK~~~~~~~~~r~I~I 109 (110)
.+.|++.+.+.|.|-....... |++|.|++.||..++. ....|+|
T Consensus 720 ~v~v~vkg~G~lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~ 775 (777)
T PLN02711 720 SVQIGVKGSGEMRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEY 775 (777)
T ss_pred eEEEEEEeeeEEEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEE
Confidence 4666666655666544433221 8999999999987732 3555554
No 79
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=33.87 E-value=57 Score=23.45 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=6.9
Q ss_pred eeCcEEEEE
Q 041072 84 FRKWVLRIT 92 (110)
Q Consensus 84 ~~~GvL~I~ 92 (110)
|++|.|.|.
T Consensus 170 ~~~g~~~L~ 178 (181)
T TIGR02761 170 YSGGRLVLD 178 (181)
T ss_pred EcCCEEEEe
Confidence 688888775
No 80
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=32.59 E-value=76 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.549 Sum_probs=11.0
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
+++++|+++++ .|+|+|.+.
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~G 30 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPKG 30 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCCe
Confidence 35555666553 566665543
No 81
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=31.62 E-value=33 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=7.6
Q ss_pred ceEEEEecCeEEEEE
Q 041072 62 NVKIEVEENRVLRMR 76 (110)
Q Consensus 62 di~i~v~~~~~L~I~ 76 (110)
|++++..+| +|+|+
T Consensus 26 d~D~e~~~g-VLti~ 39 (102)
T TIGR03421 26 DIDCERAGG-VLTLT 39 (102)
T ss_pred CeeeecCCC-EEEEE
Confidence 455555554 66665
No 82
>PRK10568 periplasmic protein; Provisional
Probab=29.92 E-value=87 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCCCCCceEEEEecCeEEEEEEEecC
Q 041072 56 LGIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 56 PG~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
++++..+|+|.+.+| .++++|+-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 667778999999997 8999999874
No 83
>PRK10568 periplasmic protein; Provisional
Probab=29.24 E-value=1.1e+02 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCCCCCceEEEEecCeEEEEEEEecC
Q 041072 56 LGIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 56 PG~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
+.++..+|+|.+++| ++++.|.-..
T Consensus 152 ~~v~~~~I~V~v~~G-~V~L~G~V~s 176 (203)
T PRK10568 152 DIVPSRKVKVETTDG-VVQLSGTVDS 176 (203)
T ss_pred CCCCcceeEEEEeCc-EEEEEEEECC
Confidence 556778999999996 9999999853
No 84
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.01 E-value=38 Score=22.40 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=8.2
Q ss_pred CceEEEEecCeEEEEE
Q 041072 61 DNVKIEVEENRVLRMR 76 (110)
Q Consensus 61 edi~i~v~~~~~L~I~ 76 (110)
.+++++..+| +|+|+
T Consensus 28 ~d~D~e~~~g-VLti~ 42 (105)
T cd00503 28 ADIDVETQGG-VLTLT 42 (105)
T ss_pred cCEeeeccCC-EEEEE
Confidence 3555555554 66665
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=27.70 E-value=90 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.868 Sum_probs=9.0
Q ss_pred CceEEEEecCeEEEEEEEe
Q 041072 61 DNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~ 79 (110)
++++|+++++ .|+|+|..
T Consensus 13 ~~V~v~i~~~-~v~vkGp~ 30 (178)
T CHL00140 13 DNVNVSIDDQ-IIKVKGPK 30 (178)
T ss_pred CCCEEEEECC-EEEEECCC
Confidence 4455555553 55555443
No 86
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=27.53 E-value=76 Score=19.08 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=17.2
Q ss_pred CceEEEEecCeEEEEEEEecCCceeCcEE
Q 041072 61 DNVKIEVEENRVLRMRGERKSSSFRKWVL 89 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~~~~~~~~GvL 89 (110)
+-+.++++++-+-.+.+.-+.++|+||.-
T Consensus 27 N~v~v~~~g~~VA~~ta~GkveeY~ng~~ 55 (59)
T PF05862_consen 27 NAVAVQVDGGIVAAVTANGKVEEYKNGSH 55 (59)
T ss_pred ceEEEeeCCCEEEEEecCCceeeeeccee
Confidence 45667777753333344455566888864
No 87
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=26.95 E-value=1.5e+02 Score=17.75 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=18.0
Q ss_pred ceEEECCCcEEEEEEeCCCCCCc
Q 041072 40 AKWKETPPAQVITLDILGIKKDN 62 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~ked 62 (110)
+...+..--|.-.+++||+.++.
T Consensus 46 v~~~~~~ipF~~~ie~~g~~~~~ 68 (87)
T PF12673_consen 46 VYSVEQEIPFSQFIELPGINEGM 68 (87)
T ss_pred EEEEEEEeeeeEEEECCCcCCCC
Confidence 66667777777899999998764
No 88
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=26.40 E-value=1e+02 Score=19.82 Aligned_cols=33 Identities=21% Similarity=0.515 Sum_probs=21.6
Q ss_pred eeceEEECCCcEEEEEEeCCCCCCceEEEE--ecCe
Q 041072 38 ARAKWKETPPAQVITLDILGIKKDNVKIEV--EENR 71 (110)
Q Consensus 38 ~~vdi~e~~~~~~i~~dlPG~~kedi~i~v--~~~~ 71 (110)
+.+||.-|++.|+.+=|+. .+.-.|+.++ ++|+
T Consensus 5 akvdwigtpkpyiykddvt-yda~~idfsl~~ddnr 39 (93)
T PF13049_consen 5 AKVDWIGTPKPYIYKDDVT-YDATSIDFSLENDDNR 39 (93)
T ss_pred ceeeeccCCCceEecccce-eeeeEEEEEeccCCCe
Confidence 4799999999999886652 3333444444 4554
No 89
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=26.05 E-value=2.3e+02 Score=19.63 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecC-CceeCcEEEEEE
Q 041072 46 PPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKS-SSFRKWVLRITV 93 (110)
Q Consensus 46 ~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~-~~~~~GvL~I~l 93 (110)
++++.+..-..|=-=|||...|-+. ...-+-.+.. ..|++|||++.+
T Consensus 69 ~~~~~~L~F~AgpPYeDIAFkIvnr-EWd~s~k~Gfr~~Fd~gilqL~F 116 (125)
T PF09732_consen 69 NPDFCILRFHAGPPYEDIAFKIVNR-EWDYSHKRGFRCSFDRGILQLYF 116 (125)
T ss_pred CCCEEEEEEeCCCCCcCEEEEEecC-eeecCCCCCceEEeeCCEEEEEE
Confidence 4677776767787789999999874 4443322221 238999999865
No 90
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=26.03 E-value=3.5e+02 Score=24.32 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCceEEEEecCeEEEEEEEecCCc-----------eeC--cEEEEEEeCcccccCCCCeEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERKSSS-----------FRK--WVLRITVPKLSEEKKRHPKVINI 109 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~~~~-----------~~~--GvL~I~lpK~~~~~~~~~r~I~I 109 (110)
+..++|++.+.+.|.|-....... |++ |.|+|.||..+++ .....|+|
T Consensus 696 ~~~v~v~vkg~G~~g~YsS~~P~~c~vd~~~~~f~y~~~~g~~~~~~~~~~~~--~~~~~~~~ 756 (758)
T PLN02355 696 NATVRMKVRGSGLVGAYSSSRPRRVTVDSKEVEFRYEEGSGLVTFDLGVPEEE--LYLWNVTV 756 (758)
T ss_pred ccEEEEEEEecceEEEEecCCCcEEEECCeEeeeEEcCCCCeEEEEcCCCccc--CceeEEEE
Confidence 335778887766777755544322 655 9999999987753 23455554
No 91
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=26.00 E-value=1.5e+02 Score=18.68 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=20.6
Q ss_pred ECCCcEEEEEEeCC-CCCCceEEEEecCeEEEEE
Q 041072 44 ETPPAQVITLDILG-IKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 44 e~~~~~~i~~dlPG-~~kedi~i~v~~~~~L~I~ 76 (110)
+.++...+.+.+|| +.+ .|.|..|..+.|+
T Consensus 23 ~~~dG~~~la~ipgK~Rk---~iwI~~GD~VlVe 53 (83)
T smart00652 23 MCADGKERLARIPGKMRK---KVWIRRGDIVLVD 53 (83)
T ss_pred EECCCCEEEEEEchhhcc---cEEEcCCCEEEEE
Confidence 34567888899999 554 6777665456564
No 92
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=25.71 E-value=68 Score=20.57 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=13.8
Q ss_pred CCCCceEEEEecCeEEEEEEEe
Q 041072 58 IKKDNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 58 ~~kedi~i~v~~~~~L~I~g~~ 79 (110)
++.+.|.++...+ .|+|+|+.
T Consensus 22 fd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcE-EEEEEcce
Confidence 3556666776664 67777765
No 93
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=24.72 E-value=1.3e+02 Score=18.72 Aligned_cols=30 Identities=10% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecC
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEEN 70 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~ 70 (110)
-|.+..+.|.|.+.+=|+....|.+.=.+|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG 43 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNG 43 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCC
Confidence 477888999999999888877777777665
No 94
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=24.22 E-value=68 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.652 Sum_probs=15.0
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
+++++|+++++ .|+|+|.+.
T Consensus 12 P~~V~V~i~~~-~ItVkGpkG 31 (189)
T PTZ00179 12 PEDVTVSVKDR-IVTVKGKRG 31 (189)
T ss_pred CCCCEEEEeCC-EEEEECCCc
Confidence 57788888875 788887654
No 95
>PF07122 VLPT: Variable length PCR target protein (VLPT); InterPro: IPR009805 This entry represents a 29 residue repeated sequence which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. E. chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown [].
Probab=24.18 E-value=25 Score=18.36 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=11.6
Q ss_pred EEEEeCCCCCCceEEE
Q 041072 51 ITLDILGIKKDNVKIE 66 (110)
Q Consensus 51 i~~dlPG~~kedi~i~ 66 (110)
..++||+-.||.++++
T Consensus 14 s~vELp~pskE~vQLe 29 (30)
T PF07122_consen 14 SSVELPSPSKEEVQLE 29 (30)
T ss_pred cceecCCchHhhhccc
Confidence 3567888888877653
No 96
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=23.25 E-value=2.4e+02 Score=23.45 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=11.0
Q ss_pred eeCc-EEEEEEeCccc
Q 041072 84 FRKW-VLRITVPKLSE 98 (110)
Q Consensus 84 ~~~G-vL~I~lpK~~~ 98 (110)
|++| +++|++|-...
T Consensus 480 W~~gD~v~l~lpm~~r 495 (520)
T PF07944_consen 480 WKDGDVVELRLPMEVR 495 (520)
T ss_pred ccCCcEEEEEecCeeE
Confidence 6665 88999886653
No 97
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=21.81 E-value=2.3e+02 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=26.5
Q ss_pred CceEEEEecCeEEEEEEEecCCc-----------eeC-cEEEEEEeCcccc
Q 041072 61 DNVKIEVEENRVLRMRGERKSSS-----------FRK-WVLRITVPKLSEE 99 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~~~~~-----------~~~-GvL~I~lpK~~~~ 99 (110)
..+.|++.+.+.+.+-..++... |.+ |.|+|.||..+++
T Consensus 805 ~~v~v~VrG~G~f~~Yss~~P~~c~vdg~ev~F~y~~~g~l~~~lp~~~~~ 855 (865)
T PLN02982 805 CSVKVKVKGGGRFLAYSSEAPKKCYLNGKEVGFEWEEEGKLSFFVPWTEES 855 (865)
T ss_pred ceEEEEEEecceEEEEecCCCeEEEECCeEeeeEECCCCeEEEEccCCccc
Confidence 44778887765666654444322 665 9999999987753
No 98
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=21.69 E-value=1.5e+02 Score=16.56 Aligned_cols=20 Identities=10% Similarity=0.552 Sum_probs=14.9
Q ss_pred ceEEEEecCeEEEEEEEecC
Q 041072 62 NVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 62 di~i~v~~~~~L~I~g~~~~ 81 (110)
.|.+.+.++.++.|+|....
T Consensus 16 ~i~~~v~~g~i~~v~g~~~~ 35 (55)
T PF04879_consen 16 GIDVYVKDGKIVKVEGDPDH 35 (55)
T ss_dssp EEEEEEETTEEEEEEE-TTS
T ss_pred cEEEEEecCceEEEECCCCC
Confidence 57888888878888887653
No 99
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=20.45 E-value=1.5e+02 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCCceEEEEecCeEEEEE
Q 041072 50 VITLDILGIKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 50 ~i~~dlPG~~kedi~i~v~~~~~L~I~ 76 (110)
-|.+.+||+..+.+.++..++ .|+=.
T Consensus 17 pisIsvpgv~~~~v~~s~~gg-sl~~~ 42 (181)
T PF12080_consen 17 PISISVPGVPSNKVPASATGG-SLSKS 42 (181)
T ss_pred cEEEEeCCCCccccEEEeeCC-EEEec
Confidence 467788888888888887764 55433
No 100
>TIGR02503 type_III_SycN type III secretion chaperone SycN. Members of this protein family are part of the machinery of bacterial type III secretion in a number of bacteria that target animal cells. In the well-studied system from Yersinia, a complex of this protein (SycN) and YscB (pfam07329) acts as a chaperone for the export of YopN (PubMed:10094626). YopN then acts to control effector protein secretion, in response to calcium levels, so that secretion occurs only after contact with the targeted eukaryotic cell.
Probab=20.17 E-value=3e+02 Score=18.83 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=24.2
Q ss_pred eCCCC--CCceEEEEecCeEEEEEEEecCCceeCcEEEEEEeCccc
Q 041072 55 ILGIK--KDNVKIEVEENRVLRMRGERKSSSFRKWVLRITVPKLSE 98 (110)
Q Consensus 55 lPG~~--kedi~i~v~~~~~L~I~g~~~~~~~~~GvL~I~lpK~~~ 98 (110)
+||+. ..-+++++++.+.|.|+ ..+|=|.|.+-+.-+
T Consensus 14 ~~~~~~~~~~i~l~~e~~gtL~iE-------~~~~~L~L~LAr~~p 52 (119)
T TIGR02503 14 LPTPAPLPRLAQLSMEQSGRLYVE-------QHDGTLLLWLARSLE 52 (119)
T ss_pred CCCCCCCCcceEEEecCCcEEEEE-------ecCCEEEEEEeccCC
Confidence 44444 33478888755578887 567777777766553
No 101
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=20.06 E-value=1.6e+02 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCcEEEEEEeCCCCCCceEEEEecCeEE
Q 041072 46 PPAQVITLDILGIKKDNVKIEVEENRVL 73 (110)
Q Consensus 46 ~~~~~i~~dlPG~~kedi~i~v~~~~~L 73 (110)
++.|.|++..+|++...++|.|..+...
T Consensus 340 pG~ytl~vs~~GY~~~~~~v~V~~~~~~ 367 (375)
T cd03863 340 PGTYKVTASARGYDPVTKTVEVDSKGAV 367 (375)
T ss_pred CeeEEEEEEEcCcccEEEEEEEcCCCcE
Confidence 5678899999999888888888765333
Done!