Query 041072
Match_columns 110
No_of_seqs 141 out of 1113
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gme_A Heat shock protein 16.9 99.9 2.5E-21 8.6E-26 135.7 9.5 75 34-110 41-150 (151)
2 4eld_A MJ16.5-P1, small heat s 99.8 4.7E-21 1.6E-25 135.2 9.0 67 40-110 59-161 (161)
3 3l1e_A Alpha-crystallin A chai 99.8 2.1E-19 7.2E-24 119.3 8.4 71 39-110 4-105 (106)
4 3gla_A Low molecular weight he 99.8 3.3E-19 1.1E-23 116.4 9.1 63 34-98 2-99 (100)
5 4fei_A Heat shock protein-rela 99.8 6.1E-19 2.1E-23 116.0 8.8 65 33-99 3-97 (102)
6 2wj5_A Heat shock protein beta 99.8 3.7E-19 1.3E-23 117.1 6.5 67 39-109 3-98 (101)
7 3aab_A Putative uncharacterize 99.7 3.1E-18 1.1E-22 115.9 5.5 62 35-98 23-117 (123)
8 2klr_A Alpha-crystallin B chai 99.7 8.6E-18 2.9E-22 120.6 5.9 68 40-110 66-162 (175)
9 3q9p_A Heat shock protein beta 99.7 9.8E-17 3.4E-21 102.5 7.6 55 42-97 2-85 (85)
10 2bol_A TSP36, small heat shock 99.7 7.8E-17 2.7E-21 124.7 8.5 64 34-99 96-191 (314)
11 2y1y_A Alpha-crystallin B chai 99.6 3.3E-16 1.1E-20 100.8 6.8 57 43-100 2-87 (90)
12 2bol_A TSP36, small heat shock 99.4 5E-13 1.7E-17 103.4 6.5 57 40-97 223-314 (314)
13 2xcm_C SGT1-like protein, cyto 98.8 3.2E-08 1.1E-12 62.6 7.3 59 39-98 4-82 (92)
14 1rl1_A Suppressor of G2 allele 98.7 3.7E-08 1.3E-12 64.9 6.7 59 39-98 11-89 (114)
15 1wfi_A Nuclear distribution ge 97.6 0.00048 1.6E-08 46.3 8.5 62 35-98 6-88 (131)
16 3qor_A Nuclear migration prote 97.4 0.0013 4.4E-08 43.7 9.0 62 35-98 15-97 (121)
17 1x5m_A Calcyclin-binding prote 97.4 0.0011 3.8E-08 44.3 8.3 59 39-98 22-104 (127)
18 1ejf_A Progesterone receptor P 97.4 0.00078 2.7E-08 45.0 7.3 59 37-98 3-82 (125)
19 1wgv_A KIAA1068 protein; CS do 97.3 0.0018 6E-08 43.1 8.7 61 36-98 19-102 (124)
20 2o30_A Nuclear movement protei 97.3 0.0009 3.1E-08 45.0 6.7 58 39-97 6-80 (131)
21 1wh0_A Ubiquitin carboxyl-term 97.1 0.002 6.7E-08 43.9 7.4 40 38-78 20-60 (134)
22 2k8q_A Protein SHQ1; beta-sand 97.0 0.0009 3.1E-08 45.9 4.5 60 39-99 5-84 (134)
23 2rh0_A NUDC domain-containing 96.9 0.0025 8.7E-08 44.3 6.7 59 39-98 15-91 (157)
24 3eud_A Protein SHQ1; CS domain 96.8 0.005 1.7E-07 41.1 6.8 64 35-100 16-99 (115)
25 2kmw_A Uncharacterized protein 96.1 0.011 3.8E-07 40.8 5.3 57 39-98 6-82 (150)
26 3igf_A ALL4481 protein; two-do 95.6 0.015 5.2E-07 45.4 4.8 55 39-96 299-369 (374)
27 2cg9_X CO-chaperone protein SB 95.2 0.0043 1.5E-07 41.9 0.5 59 36-98 6-98 (134)
28 4fei_A Heat shock protein-rela 77.8 6.2 0.00021 24.5 5.5 33 48-81 62-95 (102)
29 3l1e_A Alpha-crystallin A chai 77.3 5.6 0.00019 25.1 5.2 32 49-81 57-90 (106)
30 3q9p_A Heat shock protein beta 76.9 5.1 0.00017 24.2 4.7 31 48-79 51-83 (85)
31 2wj5_A Heat shock protein beta 75.4 5.6 0.00019 24.8 4.8 31 49-80 56-88 (101)
32 3gla_A Low molecular weight he 74.0 6.5 0.00022 24.1 4.8 33 48-81 65-98 (100)
33 2y1y_A Alpha-crystallin B chai 73.2 5.1 0.00018 24.4 4.1 31 49-80 51-83 (90)
34 4eld_A MJ16.5-P1, small heat s 72.7 6.8 0.00023 26.4 5.0 33 48-81 118-151 (161)
35 3jx8_A Putative lipoprotein; s 69.8 15 0.00052 26.2 6.6 56 39-95 33-95 (250)
36 1gme_A Heat shock protein 16.9 66.6 13 0.00044 24.8 5.3 33 48-81 105-138 (151)
37 2klr_A Alpha-crystallin B chai 62.6 10 0.00035 26.2 4.3 32 49-81 118-151 (175)
38 3aab_A Putative uncharacterize 60.8 12 0.0004 23.9 4.1 32 48-80 82-115 (123)
39 3lyc_A Putative pectinase; str 58.0 17 0.00059 25.7 4.9 57 39-96 27-86 (241)
40 3rd4_A Uncharacterized protein 55.4 9.1 0.00031 24.6 2.7 37 43-79 32-78 (100)
41 2kgs_A Uncharacterized protein 47.9 15 0.00051 24.1 2.9 26 55-81 2-27 (132)
42 1rl6_A Protein (ribosomal prot 42.0 22 0.00076 24.8 3.2 35 60-95 11-55 (177)
43 1nkw_E 50S ribosomal protein L 41.7 24 0.00082 25.4 3.4 20 60-80 39-58 (212)
44 3pet_A Putative adhesin; right 41.6 51 0.0017 23.0 5.1 58 39-97 31-91 (221)
45 2cql_A OK/SW-CL.103, 60S ribos 38.9 28 0.00095 21.9 3.1 20 60-80 20-39 (100)
46 3ljy_A Putative adhesin; struc 36.9 91 0.0031 21.9 5.9 54 39-94 32-85 (243)
47 1vq8_E 50S ribosomal protein L 36.3 31 0.001 24.1 3.2 35 60-95 9-54 (178)
48 1ew4_A CYAY protein; friedreic 36.3 14 0.00048 23.6 1.3 29 61-98 28-56 (106)
49 2gjh_A Designed protein; oblig 35.3 30 0.001 19.6 2.5 20 60-80 32-51 (62)
50 3v2d_H 50S ribosomal protein L 34.8 35 0.0012 23.8 3.3 18 61-79 13-30 (180)
51 2ks0_A Uncharacterized protein 34.7 28 0.00096 20.8 2.4 33 58-91 18-53 (71)
52 3j21_F 50S ribosomal protein L 29.5 46 0.0016 23.3 3.2 20 60-80 14-33 (184)
53 2hth_B Vacuolar protein sortin 29.2 55 0.0019 21.6 3.5 10 39-48 25-34 (140)
54 3oeq_A Frataxin homolog, mitoc 28.3 22 0.00074 23.5 1.2 13 63-76 49-61 (123)
55 2e4t_A Endoglucanase, xylogluc 25.7 2.6E+02 0.0087 22.4 7.3 51 46-97 456-508 (519)
56 2op6_A Heat shock 70 kDa prote 23.9 1.5E+02 0.0052 19.1 5.4 40 39-78 48-100 (152)
57 1qys_A TOP7; alpha-beta, novel 22.5 86 0.003 19.4 3.1 20 60-80 76-95 (106)
58 3lso_A Putative membrane ancho 22.4 27 0.00091 27.9 0.9 9 84-92 113-121 (489)
59 3t3l_A Frataxin, mitochondrial 22.4 1.1E+02 0.0036 20.2 3.8 15 61-76 40-54 (129)
60 1n91_A ORF, hypothetical prote 21.9 1.6E+02 0.0055 18.7 5.0 33 42-76 8-41 (108)
61 3r8s_G 50S ribosomal protein L 21.2 38 0.0013 23.5 1.5 18 61-79 12-29 (176)
62 2hbp_A Cytoskeleton assembly c 21.1 91 0.0031 18.5 2.9 30 41-70 7-36 (68)
63 2yih_A CEL44C, xyloglucanase; 20.5 3.3E+02 0.011 21.7 7.1 14 84-97 496-509 (524)
No 1
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.85 E-value=2.5e-21 Score=135.74 Aligned_cols=75 Identities=43% Similarity=0.640 Sum_probs=62.9
Q ss_pred cccceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc------------------------------
Q 041072 34 TLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS------------------------------ 83 (110)
Q Consensus 34 ~~~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~------------------------------ 83 (110)
.+.| ++||+|++++|+|.++|||++++||+|++++++.|+|+|+++.+.
T Consensus 41 ~~~p-~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~ 119 (151)
T 1gme_A 41 FANA-RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 119 (151)
T ss_dssp HGGG-CEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG
T ss_pred ccCC-ceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCcccc
Confidence 4556 599999999999999999999999999995434999999876421
Q ss_pred -----eeCcEEEEEEeCcccccCCCCeEEecC
Q 041072 84 -----FRKWVLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 84 -----~~~GvL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
|+||||+|++||.++.+ ++.|+|+|+
T Consensus 120 ~i~A~~~nGvL~I~lPK~~~~~-~~~~~I~I~ 150 (151)
T 1gme_A 120 EVKAGLENGVLTVTVPKAEVKK-PEVKAIQIS 150 (151)
T ss_dssp GCEEEEETTEEEEEEECCCCCT-TCCCCCCCC
T ss_pred ceEEEEECCEEEEEEEccCcCC-CCCeEeeeC
Confidence 79999999999998654 457888874
No 2
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.84 E-value=4.7e-21 Score=135.22 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=60.8
Q ss_pred ceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--------------c----------------------
Q 041072 40 AKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--------------S---------------------- 83 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--------------~---------------------- 83 (110)
+||+|++++|+|.++|||++++||+|+++++ .|+|+|+++.. .
T Consensus 59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~-~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~ 137 (161)
T 4eld_A 59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK 137 (161)
T ss_dssp EEEEECSSEEEEEEECTTCCGGGEEEEEETT-EEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEE
T ss_pred eeEEEeCCEEEEEEECCCCChHhEEEEEECC-EEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEE
Confidence 9999999999999999999999999999997 99999998751 1
Q ss_pred eeCcEEEEEEeCcccccCCCCeEEecC
Q 041072 84 FRKWVLRITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 84 ~~~GvL~I~lpK~~~~~~~~~r~I~I~ 110 (110)
|+||||+|+|||.+.++ +|+|+|+
T Consensus 138 ~~nGvL~I~lpK~~~~~---~r~I~Ie 161 (161)
T 4eld_A 138 FENGVLSVILPKAESSI---KKGINIE 161 (161)
T ss_dssp EETTEEEEEEEBCGGGS---CCCCCCC
T ss_pred EECCEEEEEEEcCCCCC---CcEeecC
Confidence 79999999999998654 8999985
No 3
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.80 E-value=2.1e-19 Score=119.32 Aligned_cols=71 Identities=15% Similarity=0.325 Sum_probs=61.6
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEE
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVL 89 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL 89 (110)
..||+|++++|+|.++|||++++||+|+++++ .|+|+|+++... | +||||
T Consensus 4 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL 82 (106)
T 3l1e_A 4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQED-FVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGML 82 (106)
T ss_dssp SEEEEECSSEEEEEEECTTSCGGGEEEEEETT-EEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEE
T ss_pred ceEEEEcCCEEEEEEECCCCChHHEEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEE
Confidence 37999999999999999999999999999997 899999875311 7 89999
Q ss_pred EEEEeCccccc--CCCCeEEecC
Q 041072 90 RITVPKLSEEK--KRHPKVINID 110 (110)
Q Consensus 90 ~I~lpK~~~~~--~~~~r~I~I~ 110 (110)
+|++||.+++. ++++|+|+|.
T Consensus 83 ~I~~PK~~~~~~~~~~~r~I~I~ 105 (106)
T 3l1e_A 83 TFSGPKIPSGVDAGHSERAIPVS 105 (106)
T ss_dssp EEEEEBCCCCTTTTSSSCCCCCC
T ss_pred EEEEEccCcccccCCCCeEeeec
Confidence 99999998753 2468999984
No 4
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.79 E-value=3.3e-19 Score=116.40 Aligned_cols=63 Identities=35% Similarity=0.510 Sum_probs=55.2
Q ss_pred cccceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc------------------------------
Q 041072 34 TLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS------------------------------ 83 (110)
Q Consensus 34 ~~~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~------------------------------ 83 (110)
.|.| ++||+|++++|+|.++|||++++||+|+++++ .|+|+|+++.+.
T Consensus 2 ~~~P-~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 79 (100)
T 3gla_A 2 QWVP-RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADAD 79 (100)
T ss_dssp CSCC-CEEEEECSSEEEEEEECTTSCGGGCEEEEETT-EEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTT
T ss_pred CccC-cEEEEECCCEEEEEEECCCCCHHHEEEEEECC-EEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChH
Confidence 4678 59999999999999999999999999999997 899999986421
Q ss_pred -----eeCcEEEEEEeCccc
Q 041072 84 -----FRKWVLRITVPKLSE 98 (110)
Q Consensus 84 -----~~~GvL~I~lpK~~~ 98 (110)
|+||||+|++||.++
T Consensus 80 ~i~A~~~~GvL~I~~pK~~~ 99 (100)
T 3gla_A 80 GITAAGRNGVLEIRIPKRPA 99 (100)
T ss_dssp SCEEEEETTEEEEEEEBC--
T ss_pred HeEEEEeCCEEEEEEecCCC
Confidence 799999999999874
No 5
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.78 E-value=6.1e-19 Score=116.03 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=57.7
Q ss_pred ccccceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc-----------------------------
Q 041072 33 QTLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------- 83 (110)
Q Consensus 33 ~~~~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------- 83 (110)
..|.| ++||+|++++|+|.++|||++++||+|+++++ .|+|+|+++.+.
T Consensus 3 g~~~P-~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~-~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A 80 (102)
T 4fei_A 3 GPWTP-AADWRDAGTHLDLLLDVPGVDAGTLALAEDGG-QLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVA 80 (102)
T ss_dssp EECCC-CEEEEEETTEEEEEEECTTCCGGGCEEEEETT-EEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEE
T ss_pred CcccC-cEEEEEcCCEEEEEEECCCCchHhEEEEEECC-EEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEE
Confidence 35677 59999999999999999999999999999997 899999985321
Q ss_pred -eeCcEEEEEEeCcccc
Q 041072 84 -FRKWVLRITVPKLSEE 99 (110)
Q Consensus 84 -~~~GvL~I~lpK~~~~ 99 (110)
|+||||+|++||.++.
T Consensus 81 ~~~~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 81 SLAGGVLTVRFEKLRPT 97 (102)
T ss_dssp EEETTEEEEEEEBSSCC
T ss_pred EEECCEEEEEEEccCcc
Confidence 7999999999999864
No 6
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.77 E-value=3.7e-19 Score=117.14 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=56.9
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEE
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVL 89 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL 89 (110)
.+||+|++++|+|.++|||++++||+|+++++ .|+|+|+++... | +||||
T Consensus 3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL 81 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVGD-HVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL 81 (101)
T ss_dssp CCCCCCCSSCEEEEEECTTSCGGGEEEEEETT-EEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred cEEEEEeCCEEEEEEECCCCcHHHeEEEEECC-EEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence 48999999999999999999999999999997 899999986421 8 79999
Q ss_pred EEEEeCcccccCCCCeEEec
Q 041072 90 RITVPKLSEEKKRHPKVINI 109 (110)
Q Consensus 90 ~I~lpK~~~~~~~~~r~I~I 109 (110)
+|++||.++++ ++.++|
T Consensus 82 ~I~lPK~~~~~---~~~~~i 98 (101)
T 2wj5_A 82 SIQATPASAQA---SLPSPP 98 (101)
T ss_dssp EEEECBCCCCC---SSCC--
T ss_pred EEEEECCCcCC---CCCCcc
Confidence 99999998755 444444
No 7
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.73 E-value=3.1e-18 Score=115.90 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=55.0
Q ss_pred ccceeceEEECCCcEEEEEEeCCCCCCceEEEEec-CeEEEEEEEecCC------------c------------------
Q 041072 35 LVLARAKWKETPPAQVITLDILGIKKDNVKIEVEE-NRVLRMRGERKSS------------S------------------ 83 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~-~~~L~I~g~~~~~------------~------------------ 83 (110)
+.| ++||+|++++|+|.++|||++++||+|++++ + .|+|+|+++.+ .
T Consensus 23 ~~P-~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~-~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~ 100 (123)
T 3aab_A 23 VYP-PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQN-ELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEIS 100 (123)
T ss_dssp HCS-CEEEEEETTEEEEEEECCSCCGGGCEEEEETTT-EEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCE
T ss_pred CCC-cEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCC-EEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCe
Confidence 346 5999999999999999999999999999999 7 89999996532 1
Q ss_pred --eeCcEEEEEEeCccc
Q 041072 84 --FRKWVLRITVPKLSE 98 (110)
Q Consensus 84 --~~~GvL~I~lpK~~~ 98 (110)
|+||||+|++||.+.
T Consensus 101 A~~~~GvL~I~lPK~~~ 117 (123)
T 3aab_A 101 GKYENGVLTIRIPIAGT 117 (123)
T ss_dssp EEEETTEEEEEEEGGGE
T ss_pred eEEcCCEEEEEEEcCCC
Confidence 789999999999885
No 8
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.71 E-value=8.6e-18 Score=120.63 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=48.8
Q ss_pred ceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEE
Q 041072 40 AKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLR 90 (110)
Q Consensus 40 vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~ 90 (110)
+||+|++++|+|.+||||++++||+|+++++ .|+|+|+++.+. | +||||+
T Consensus 66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~ 144 (175)
T 2klr_A 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLT 144 (175)
T ss_dssp ---CCCCSEEEEEECCSSCCGGGEEEEEETT-EEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEE
T ss_pred eEEEEcCCeEEEEEECCCCChHHEEEEEECC-EEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEE
Confidence 7999999999999999999999999999997 999999986421 7 799999
Q ss_pred EEEeCcccccCCCCeEEecC
Q 041072 91 ITVPKLSEEKKRHPKVINID 110 (110)
Q Consensus 91 I~lpK~~~~~~~~~r~I~I~ 110 (110)
|++||.+.++ +.|+|+|.
T Consensus 145 I~lPK~~~~~--~~r~I~I~ 162 (175)
T 2klr_A 145 VNGPRKQVSG--PERTIPIT 162 (175)
T ss_dssp EEEECC--------------
T ss_pred EEEECCCCCC--CCeEEEEe
Confidence 9999987543 36889874
No 9
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.68 E-value=9.8e-17 Score=102.52 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=47.5
Q ss_pred EEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------ee-CcEEEEE
Q 041072 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------FR-KWVLRIT 92 (110)
Q Consensus 42 i~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~~-~GvL~I~ 92 (110)
+.|++++|.|.++|||++++||+|+++++ .|+|+|+++... |+ ||||+|+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTKDG-VVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEETT-EEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEE
Confidence 46899999999999999999999999997 999999986421 67 9999999
Q ss_pred EeCcc
Q 041072 93 VPKLS 97 (110)
Q Consensus 93 lpK~~ 97 (110)
+||.+
T Consensus 81 lPK~k 85 (85)
T 3q9p_A 81 APMPK 85 (85)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99963
No 10
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.68 E-value=7.8e-17 Score=124.70 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=56.8
Q ss_pred cccceeceEEECCC----cEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc--------------------------
Q 041072 34 TLVLARAKWKETPP----AQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS-------------------------- 83 (110)
Q Consensus 34 ~~~p~~vdi~e~~~----~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~-------------------------- 83 (110)
.+.| ++||+|+++ +|+|+++|||++++||+|+++++ .|+|+|+++.+.
T Consensus 96 ~~~p-~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~-~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A 173 (314)
T 2bol_A 96 ELDF-LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKN-KLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQA 173 (314)
T ss_dssp TTGG-GGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETT-EEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEE
T ss_pred cCCC-ccceEEcCCCCceEEEEEEECCCCchHHeEEEEECC-EEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEE
Confidence 3556 599999999 99999999999999999999997 999999987521
Q ss_pred -ee-CcEEEEEEeCcccc
Q 041072 84 -FR-KWVLRITVPKLSEE 99 (110)
Q Consensus 84 -~~-~GvL~I~lpK~~~~ 99 (110)
|+ ||||+|++||.+++
T Consensus 174 ~~~~nGVL~I~lPK~~~~ 191 (314)
T 2bol_A 174 TITTDDVLVIEAPVNEPN 191 (314)
T ss_dssp EECSSSEEEEEEEBSSCC
T ss_pred EEeCCCEEEEEEeccCcc
Confidence 78 99999999999864
No 11
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.64 E-value=3.3e-16 Score=100.85 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=44.7
Q ss_pred EECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc----------------------------e-eCcEEEEEE
Q 041072 43 KETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS----------------------------F-RKWVLRITV 93 (110)
Q Consensus 43 ~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~----------------------------~-~~GvL~I~l 93 (110)
.+++++|+|.++|||++++||+|+++++ .|+|+|+++... | +||||+|++
T Consensus 2 k~~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~ 80 (90)
T 2y1y_A 2 AMEKDRFSVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNG 80 (90)
T ss_dssp ----CCEEEEEECTTSCGGGEEEEEETT-EEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEE
T ss_pred CcCCCEEEEEEECCCCcHHHeEEEEECC-EEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEE
Confidence 3689999999999999999999999997 899999975310 8 899999999
Q ss_pred eCccccc
Q 041072 94 PKLSEEK 100 (110)
Q Consensus 94 pK~~~~~ 100 (110)
||.++++
T Consensus 81 pK~~~~~ 87 (90)
T 2y1y_A 81 PRKQVSG 87 (90)
T ss_dssp CBC----
T ss_pred EcCCCCC
Confidence 9998654
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.38 E-value=5e-13 Score=103.38 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=47.9
Q ss_pred ceEEECC---CcEEEEEEe-CCCCCCceEEEEecCeEEEEEEEecCCc-------------------------------e
Q 041072 40 AKWKETP---PAQVITLDI-LGIKKDNVKIEVEENRVLRMRGERKSSS-------------------------------F 84 (110)
Q Consensus 40 vdi~e~~---~~~~i~~dl-PG~~kedi~i~v~~~~~L~I~g~~~~~~-------------------------------~ 84 (110)
++|.+++ ++|+|.++| ||++|+||+|++++| +|+|+|+++.+. |
T Consensus 223 ~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~~-~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~ 301 (314)
T 2bol_A 223 LEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGN-KVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI 301 (314)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSS-EEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEE
T ss_pred CcEEEecCCCcEEEEEEEcCCCCChHHeEEEEECC-EEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEE
Confidence 6777655 678899999 999999999999997 999999997532 7
Q ss_pred eCcEEEEEEeCcc
Q 041072 85 RKWVLRITVPKLS 97 (110)
Q Consensus 85 ~~GvL~I~lpK~~ 97 (110)
+||||+|++||..
T Consensus 302 ~dGvL~i~~Pk~~ 314 (314)
T 2bol_A 302 VDGLMVVEAPLFK 314 (314)
T ss_dssp ETTEEEEEEEEEC
T ss_pred eCCEEEEEEecCC
Confidence 9999999999863
No 13
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=98.75 E-value=3.2e-08 Score=62.58 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=50.7
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC-c-------------------eeCcEEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS-S-------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~-~-------------------~~~GvL~I~lpK~~~ 98 (110)
+++|+++++.+.|++.+||+.+++++|++.++ .|+|++..... . +.+|.|+|+|.|.++
T Consensus 4 ~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~-~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 82 (92)
T 2xcm_C 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQ-ILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADI 82 (92)
T ss_dssp EEEEEEETTEEEEEEECCSCCGGGEEEEECSS-BEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBSSS
T ss_pred cccEEeCCCEEEEEEEECCCChHHeEEEEECC-EEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcCCC
Confidence 69999999999999999999999999999997 79998764211 1 478999999999874
No 14
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=98.71 E-value=3.7e-08 Score=64.92 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=50.7
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCc--------------------eeCcEEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS--------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~--------------------~~~GvL~I~lpK~~~ 98 (110)
+++|+++++.+.|++.+||+++++++|++.++ .|+|++...... +.+|.|+|+|+|.++
T Consensus 11 ~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~-~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K~~~ 89 (114)
T 1rl1_A 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEK-ELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEA 89 (114)
T ss_dssp CEEEEECSSEEEEEECCCSCCGGGEEEECSSS-CEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECSSC
T ss_pred CccEEeCCCEEEEEEEeCCCCHHHCEEEEEcC-EEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEcCCC
Confidence 58999999999999999999999999999997 799987642111 478999999999874
No 15
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=97.58 E-value=0.00048 Score=46.27 Aligned_cols=62 Identities=13% Similarity=0.265 Sum_probs=49.6
Q ss_pred ccceeceEEECCCcEEEEEEeC-C--CCCCceEEEEecCeEEEEEEEecCCc-----------------eeCc-EEEEEE
Q 041072 35 LVLARAKWKETPPAQVITLDIL-G--IKKDNVKIEVEENRVLRMRGERKSSS-----------------FRKW-VLRITV 93 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlP-G--~~kedi~i~v~~~~~L~I~g~~~~~~-----------------~~~G-vL~I~l 93 (110)
..| .+.|.++.+++.|++.+| | ++++|+.|.+..+ .|+|........ ..+| .|.|+|
T Consensus 6 ~~~-~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~-~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L 83 (131)
T 1wfi_A 6 SGP-NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRR-HLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHL 83 (131)
T ss_dssp SCC-SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETT-EEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEE
T ss_pred CCC-cEEEEecCCEEEEEEECCCCCcccccceEEEEeCC-EEEEEECCceEEEecccccccccccCEEEEcCCCEEEEEE
Confidence 335 599999999999999999 6 8999999999997 788875322110 3677 899999
Q ss_pred eCccc
Q 041072 94 PKLSE 98 (110)
Q Consensus 94 pK~~~ 98 (110)
-|..+
T Consensus 84 ~K~~~ 88 (131)
T 1wfi_A 84 EKINK 88 (131)
T ss_dssp EBSSS
T ss_pred EECCC
Confidence 99874
No 16
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.43 E-value=0.0013 Score=43.72 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=48.6
Q ss_pred ccceeceEEECCCcEEEEEEeCC---CCCCceEEEEecCeEEEEEEEecCCc-----------------eeCc-EEEEEE
Q 041072 35 LVLARAKWKETPPAQVITLDILG---IKKDNVKIEVEENRVLRMRGERKSSS-----------------FRKW-VLRITV 93 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlPG---~~kedi~i~v~~~~~L~I~g~~~~~~-----------------~~~G-vL~I~l 93 (110)
-.| .+.|.++.+++.|++.+|. ++++|+.|.+..+ .|+|........ .++| .|.|+|
T Consensus 15 ~~~-~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~-~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L 92 (121)
T 3qor_A 15 DLP-NYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRR-HLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHL 92 (121)
T ss_dssp BCS-SCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETT-EEEEEETTSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEE
T ss_pred cCC-CEEEEEccceEEEEEECCCCCcccccceEEEEEcC-EEEEEEcCcceEEeccccccccccccEEEEcCCCEEEEEE
Confidence 345 5999999999999999994 7899999999997 687764321100 3677 999999
Q ss_pred eCccc
Q 041072 94 PKLSE 98 (110)
Q Consensus 94 pK~~~ 98 (110)
-|...
T Consensus 93 ~K~~~ 97 (121)
T 3qor_A 93 EKINK 97 (121)
T ss_dssp EBSSS
T ss_pred EECCC
Confidence 99864
No 17
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.0011 Score=44.26 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred eceEEECCCcEEEEEEeCCC---CCCceEEEEecCeEEEEEEEecC--------Cc-------------eeCcEEEEEEe
Q 041072 39 RAKWKETPPAQVITLDILGI---KKDNVKIEVEENRVLRMRGERKS--------SS-------------FRKWVLRITVP 94 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~---~kedi~i~v~~~~~L~I~g~~~~--------~~-------------~~~GvL~I~lp 94 (110)
.++|+++.+.+.|++.+||+ .++++.|++.++ .|.|...... .. ...+-+.|+|-
T Consensus 22 ~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~-~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L~ 100 (127)
T 1x5m_A 22 NYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTER-SFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCR 100 (127)
T ss_dssp SCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSS-EEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEEE
T ss_pred EEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcC-EEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEEE
Confidence 69999999999999999999 899999999997 7888764211 10 25789999999
Q ss_pred Cccc
Q 041072 95 KLSE 98 (110)
Q Consensus 95 K~~~ 98 (110)
|..+
T Consensus 101 K~~~ 104 (127)
T 1x5m_A 101 KKVE 104 (127)
T ss_dssp CSSS
T ss_pred ECCC
Confidence 9874
No 18
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=97.36 E-value=0.00078 Score=44.96 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=47.1
Q ss_pred ceeceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--c-------------------eeCcEEEEEEeC
Q 041072 37 LARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--S-------------------FRKWVLRITVPK 95 (110)
Q Consensus 37 p~~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--~-------------------~~~GvL~I~lpK 95 (110)
||.++|+++.+.+.|++.+|+. ++++|++..+ .|++++..... . ..++-+.|+|.|
T Consensus 3 P~~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~-~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K 79 (125)
T 1ejf_A 3 PASAKWYDRRDYVFIEFCVEDS--KDVNVNFEKS-KLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRK 79 (125)
T ss_dssp CCCEEEEECSSEEEEEECCTTE--EEEEEEEETT-EEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred CCceeEEeCCCEEEEEEEecCC--CceEEEEECC-EEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEE
Confidence 4469999999999999999996 6999999997 79998653211 1 246779999999
Q ss_pred ccc
Q 041072 96 LSE 98 (110)
Q Consensus 96 ~~~ 98 (110)
+.+
T Consensus 80 ~~~ 82 (125)
T 1ejf_A 80 GES 82 (125)
T ss_dssp SST
T ss_pred CCC
Confidence 864
No 19
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.33 E-value=0.0018 Score=43.10 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=48.0
Q ss_pred cceeceEEECCCcEEEEEEeC-CC-CCCceEEEEecCeEEEEEEEe--cCCc------------------eeCcE-EEEE
Q 041072 36 VLARAKWKETPPAQVITLDIL-GI-KKDNVKIEVEENRVLRMRGER--KSSS------------------FRKWV-LRIT 92 (110)
Q Consensus 36 ~p~~vdi~e~~~~~~i~~dlP-G~-~kedi~i~v~~~~~L~I~g~~--~~~~------------------~~~Gv-L~I~ 92 (110)
.| .+.|.++.+++.|++.|| |+ +++|++|.+..+ .|+|.... .... ..+|- |.|+
T Consensus 19 ~~-~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~-~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~ 96 (124)
T 1wgv_A 19 RE-NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSS-SIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVN 96 (124)
T ss_dssp CS-SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSS-EEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEE
T ss_pred CC-cEEEEEcccEEEEEEEcCCCCCchhheEEEEEcC-EEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEE
Confidence 35 599999999999999999 88 899999999997 78887532 1100 35664 9999
Q ss_pred EeCccc
Q 041072 93 VPKLSE 98 (110)
Q Consensus 93 lpK~~~ 98 (110)
|-|...
T Consensus 97 L~K~~~ 102 (124)
T 1wgv_A 97 LSKVGE 102 (124)
T ss_dssp ECBSSS
T ss_pred EEECCC
Confidence 999863
No 20
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.27 E-value=0.0009 Score=45.00 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=44.7
Q ss_pred eceEEECCCcEEEEEEeC-CCCCCceEEEEecCeEEEEEEEec-C-Cc--------------eeCcEEEEEEeCcc
Q 041072 39 RAKWKETPPAQVITLDIL-GIKKDNVKIEVEENRVLRMRGERK-S-SS--------------FRKWVLRITVPKLS 97 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~-~-~~--------------~~~GvL~I~lpK~~ 97 (110)
.+.|.++.+++.|++.|| |++++++.|.+..+ .|+|..... . +. ..+|-|.|+|-|..
T Consensus 6 ~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~-~l~v~~~g~~~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~ 80 (131)
T 2o30_A 6 KYTWDQELNEINIQFPVTGDADSSAIKIRMVGK-KICVKNQGEIVIDGELLHEVDVSSLWWVINGDVVDVNVTKKR 80 (131)
T ss_dssp CCEEEEETTEEEEEEECC---CCSCEEEEEETT-EEEEEETTEEEEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred cEEEEecCCEEEEEEECCCCCCccceEEEEECC-EEEEEECCEeeEccccccccccccCEEEEeCCEEEEEEEECC
Confidence 599999999999999996 89999999999997 688764211 1 00 36788999999984
No 21
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.14 E-value=0.002 Score=43.87 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=36.4
Q ss_pred eeceEEEC-CCcEEEEEEeCCCCCCceEEEEecCeEEEEEEE
Q 041072 38 ARAKWKET-PPAQVITLDILGIKKDNVKIEVEENRVLRMRGE 78 (110)
Q Consensus 38 ~~vdi~e~-~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~ 78 (110)
.+++|+++ .+.+.|++.++|+.+++++|++.++ .|+|...
T Consensus 20 ~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~-~l~v~~~ 60 (134)
T 1wh0_A 20 VKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQ-DFTLIFQ 60 (134)
T ss_dssp CCEEEEEETTTEEEEEEECCSBCTTSCEEEECSS-EEEEEEC
T ss_pred CCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECC-EEEEEEE
Confidence 36999999 9999999999999999999999997 7888754
No 22
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0009 Score=45.86 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=47.9
Q ss_pred eceEEECCCcEEEEEEeCCCC--CCceEEEEecCeEEEEEEEec----------------CCce--eCcEEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDILGIK--KDNVKIEVEENRVLRMRGERK----------------SSSF--RKWVLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~--kedi~i~v~~~~~L~I~g~~~----------------~~~~--~~GvL~I~lpK~~~ 98 (110)
.+.+.++++.++|.+-+|.++ ..++++.|++. .+......- ...| +.|.|+|+|||..+
T Consensus 5 ~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~-~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~~~ 83 (134)
T 2k8q_A 5 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQEN-MIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNK 83 (134)
T ss_dssp EEEEEECSSEEEEEEECCSSCCCSSSCCCEECSS-SEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEESST
T ss_pred eEEEEECCCEEEEEEEcCccccCccccEEEEeCC-EEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeCCCC
Confidence 589999999999999999999 89999999986 565532211 1114 68999999999876
Q ss_pred c
Q 041072 99 E 99 (110)
Q Consensus 99 ~ 99 (110)
.
T Consensus 84 G 84 (134)
T 2k8q_A 84 N 84 (134)
T ss_dssp T
T ss_pred C
Confidence 4
No 23
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=96.95 E-value=0.0025 Score=44.25 Aligned_cols=59 Identities=12% Similarity=0.313 Sum_probs=46.8
Q ss_pred eceEEECCCcEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC--C----------c----eeCc-EEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS--S----------S----FRKW-VLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~--~----------~----~~~G-vL~I~lpK~~~ 98 (110)
.+.|.++.+++.|++.|| |++++|+.|.+..+ .|+|...... + + ..+| .|.|+|-|...
T Consensus 15 ~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~-~L~v~~kg~~~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K~~~ 91 (157)
T 2rh0_A 15 WGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSR-HVALAVGGREILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKR 91 (157)
T ss_dssp SEEEEECSSEEEEEEECCTTCCGGGEEEEECSS-EEEEEETTEEEEEEEBSSCBCGGGCEEEEECCCEEEEEEEBSSC
T ss_pred cEEEEecCCEEEEEEECCCCCcccceEEEEecC-EEEEEECCEEEEeeccccccCccccEEEEcCCcEEEEEEEEcCC
Confidence 599999999999999998 89999999999997 6877643110 0 0 3566 59999999874
No 24
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.005 Score=41.10 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=49.4
Q ss_pred ccceeceEEECCCcEEEEEEeCCCC--CCceEEEEecCeEEEEEEE-----------ecC-----Cce--eCcEEEEEEe
Q 041072 35 LVLARAKWKETPPAQVITLDILGIK--KDNVKIEVEENRVLRMRGE-----------RKS-----SSF--RKWVLRITVP 94 (110)
Q Consensus 35 ~~p~~vdi~e~~~~~~i~~dlPG~~--kedi~i~v~~~~~L~I~g~-----------~~~-----~~~--~~GvL~I~lp 94 (110)
..| ...+.++++.++|.+-+|-+. ..++++.|+++ .+..... -.. .+| ++|.++|+||
T Consensus 16 iTP-~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~-~F~F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 16 ITP-RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQEN-MIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVA 93 (115)
T ss_dssp BCC-CEEEEECSSEEEEEEECCSCCCCSSSCEEEEETT-EEEEEETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEE
T ss_pred eCC-cEEEEECCCEEEEEEEcCceecccCccEEEEeCC-EEEEecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEc
Confidence 346 699999999999999999977 78999999997 6654322 111 124 6899999999
Q ss_pred Cccccc
Q 041072 95 KLSEEK 100 (110)
Q Consensus 95 K~~~~~ 100 (110)
|..+.+
T Consensus 94 K~~~GE 99 (115)
T 3eud_A 94 KLNKNE 99 (115)
T ss_dssp ESSTTC
T ss_pred CCcCCC
Confidence 998654
No 25
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.05 E-value=0.011 Score=40.75 Aligned_cols=57 Identities=7% Similarity=0.204 Sum_probs=43.9
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEe-cCeEEEEEEEecCC-c------------------eeCcEEEEEEeCccc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVE-ENRVLRMRGERKSS-S------------------FRKWVLRITVPKLSE 98 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~-~~~~L~I~g~~~~~-~------------------~~~GvL~I~lpK~~~ 98 (110)
.++|+++.+.++|++.+||+ ++++|++. ++ .|++++..... . ....-+.|+|.|+++
T Consensus 6 ~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~-~l~~~~~~~~~~~y~~~l~L~~~IdpeS~~~v~~~kIei~L~K~e~ 82 (150)
T 2kmw_A 6 EVLWAQRSDKVYLTVALPDA--KDISVKCEPQG-LFSFSALGAQGERFEFSLELYGKIMTEYRKNVGLRNIIFSIQKEER 82 (150)
T ss_dssp CEEEEECSSEEEEEECCSSE--EEEEECCCTTE-EEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEESSSEEEEEEECCS
T ss_pred cEEEEeCCCEEEEEEEeCCC--CceEEEEecCC-EEEEEEEcCCCceEEEEeEhhhcccccceEEecCCEEEEEEEECCC
Confidence 69999999999999999998 47899998 65 79998861111 1 135668888888763
No 26
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.56 E-value=0.015 Score=45.38 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=42.1
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEE--EecC---C-----------ceeCcEEEEEEeCc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRG--ERKS---S-----------SFRKWVLRITVPKL 96 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g--~~~~---~-----------~~~~GvL~I~lpK~ 96 (110)
++.|... .|.+++.|||++|++|++.-.++ -|+|+. .|.. . .|+||.|+|++-..
T Consensus 299 ~~~i~~~--~~~~~l~lP~~~~~~~~l~~~gd-eL~v~~g~~rR~i~LP~~L~~~~v~~A~~~~~~L~i~~~~~ 369 (374)
T 3igf_A 299 PITIDTH--NRQVRLFLPGFDKKQVKLTQYGP-EVTVEAGDQRRNIFLPPALSGRPITGAKFQNNYLIISFLEH 369 (374)
T ss_dssp SEEEETT--TTEEEEECTTCCGGGCEEEEETT-EEEEEETTEEEEEECCTTTTTCCEEEEEEETTEEEEEECCC
T ss_pred CEEEEec--cEEEEEECCCCCHHHeEEEEECC-eEEEEECCEeecccCCHHHcCCCccccEEECCEEEEEEehh
Confidence 3555444 89999999999999999999887 788873 3331 1 18999999998543
No 27
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.0043 Score=41.93 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=41.2
Q ss_pred cceeceEEECCCc-------EEEEEEeCCCCCCceEEEEecCeEEEEEEEecC-------Cc------------------
Q 041072 36 VLARAKWKETPPA-------QVITLDILGIKKDNVKIEVEENRVLRMRGERKS-------SS------------------ 83 (110)
Q Consensus 36 ~p~~vdi~e~~~~-------~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~-------~~------------------ 83 (110)
.| .++|+++.+. +.|++.+||++ +++|++..+ .|.+++.... ..
T Consensus 6 ~p-~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~~-~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~ 81 (134)
T 2cg9_X 6 NP-QVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKPS-YIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMH 81 (134)
T ss_dssp ------CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCSS-EEEECCEEC-------CEEBCEEEECSSCCCSSSEEE
T ss_pred CC-CEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEECC-EEEEEEecccccCCccCceEEEEEEChhhccccccEE
Confidence 35 6999999887 99999999984 888999886 7998754321 11
Q ss_pred -eeCcE-EEEEEeCccc
Q 041072 84 -FRKWV-LRITVPKLSE 98 (110)
Q Consensus 84 -~~~Gv-L~I~lpK~~~ 98 (110)
..++- |.|+|.|+++
T Consensus 82 ~v~~~~~vei~L~K~~~ 98 (134)
T 2cg9_X 82 KVANGQHYFLKLYKKDL 98 (134)
T ss_dssp EECCC--CEEEEEECSS
T ss_pred EECCCEEEEEEEEECCC
Confidence 35677 9999999873
No 28
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=77.79 E-value=6.2 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=26.5
Q ss_pred cEEEEEEeCC-CCCCceEEEEecCeEEEEEEEecC
Q 041072 48 AQVITLDILG-IKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 48 ~~~i~~dlPG-~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.|.-++.||. ++.+.++-++++| +|+|+-.+..
T Consensus 62 ~f~R~~~LP~~vd~~~i~A~~~~G-vL~I~lpK~~ 95 (102)
T 4fei_A 62 RFVRELAFPEPVRPASGVASLAGG-VLTVRFEKLR 95 (102)
T ss_dssp EEEEEEECSSCBCTTCCEEEEETT-EEEEEEEBSS
T ss_pred EEEEEEECCCCcchhHcEEEEECC-EEEEEEEccC
Confidence 3444778994 8999999999986 9999977654
No 29
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=77.28 E-value=5.6 Score=25.07 Aligned_cols=32 Identities=6% Similarity=0.195 Sum_probs=27.2
Q ss_pred EEEEEEeC-CCCCCceEEEE-ecCeEEEEEEEecC
Q 041072 49 QVITLDIL-GIKKDNVKIEV-EENRVLRMRGERKS 81 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~~~~ 81 (110)
|.=++.|| +++.+.++-++ .+| +|+|+..+..
T Consensus 57 F~R~~~LP~~vd~~~i~A~~s~~G-vL~I~~PK~~ 90 (106)
T 3l1e_A 57 FHRRYRLPSNVDQSALSCSLSADG-MLTFSGPKIP 90 (106)
T ss_dssp EEEEEECCTTBCTTSCEEEECTTS-EEEEEEEBCC
T ss_pred EEEEEECCCCcChhHcEEEECCCC-EEEEEEEccC
Confidence 67788999 69999999999 675 9999977654
No 30
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=76.87 E-value=5.1 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=26.5
Q ss_pred cEEEEEEeC-CCCCCceEEEEe-cCeEEEEEEEe
Q 041072 48 AQVITLDIL-GIKKDNVKIEVE-ENRVLRMRGER 79 (110)
Q Consensus 48 ~~~i~~dlP-G~~kedi~i~v~-~~~~L~I~g~~ 79 (110)
.|.=++.|| +++.+.|+-.+. +| +|+|+.-+
T Consensus 51 ~F~R~~~LP~~vd~~~i~A~~~~~G-vL~I~lPK 83 (85)
T 3q9p_A 51 CFTRKYTLPPGVDPTQVSSSLSPEG-TLTVEAPM 83 (85)
T ss_dssp EEEEEEECCTTCCGGGCEEEECTTS-EEEEEEEC
T ss_pred EEEEEEECCCCcChHHcEEEECCCC-EEEEEEEc
Confidence 577789999 699999999998 65 99998654
No 31
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=75.43 E-value=5.6 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=26.4
Q ss_pred EEEEEEeC-CCCCCceEEEE-ecCeEEEEEEEec
Q 041072 49 QVITLDIL-GIKKDNVKIEV-EENRVLRMRGERK 80 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~~~ 80 (110)
|.-++.|| +++.+.++-++ .+| +|+|+..+.
T Consensus 56 F~R~~~LP~~vd~~~i~A~~s~nG-vL~I~lPK~ 88 (101)
T 2wj5_A 56 FHRRYRLPPGVDPAAVTSALSPEG-VLSIQATPA 88 (101)
T ss_dssp EEEEEECCTTBCTTCCEEEECTTS-EEEEEECBC
T ss_pred EEEEEECCCCcChhHCEEEECCCC-EEEEEEECC
Confidence 77789999 68999999999 675 999997664
No 32
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=73.98 E-value=6.5 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=27.2
Q ss_pred cEEEEEEeCC-CCCCceEEEEecCeEEEEEEEecC
Q 041072 48 AQVITLDILG-IKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 48 ~~~i~~dlPG-~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.|.-++.||. ++.+.++-++++| +|+|+-.+..
T Consensus 65 ~f~r~~~LP~~vd~~~i~A~~~~G-vL~I~~pK~~ 98 (100)
T 3gla_A 65 SFHRRFALPDSADADGITAAGRNG-VLEIRIPKRP 98 (100)
T ss_dssp EEEEEEECCTTBCTTSCEEEEETT-EEEEEEEBC-
T ss_pred EEEEEEECCCCcChHHeEEEEeCC-EEEEEEecCC
Confidence 5677899996 8999999999996 9999876543
No 33
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=73.20 E-value=5.1 Score=24.36 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=25.7
Q ss_pred EEEEEEeC-CCCCCceEEEE-ecCeEEEEEEEec
Q 041072 49 QVITLDIL-GIKKDNVKIEV-EENRVLRMRGERK 80 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~~~ 80 (110)
|.=++.|| +++.+.++-.+ .+| +|+|+..+.
T Consensus 51 f~R~~~LP~~vd~~~i~A~~~~~G-vL~I~~pK~ 83 (90)
T 2y1y_A 51 FHRKYRIPADVDPLTITSSMSSDG-VLTVNGPRK 83 (90)
T ss_dssp EEEEEECCTTBCGGGCEEEECTTS-EEEEEECBC
T ss_pred EEEEEECCCCcChhHcEEEECCCC-EEEEEEEcC
Confidence 66788898 58999999999 676 999987654
No 34
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=72.72 E-value=6.8 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.6
Q ss_pred cEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC
Q 041072 48 AQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 48 ~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.|.-++.|| +++.+.++-++++| +|+|+-.+..
T Consensus 118 ~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~lpK~~ 151 (161)
T 4eld_A 118 EIYRTIKLPATVKEENASAKFENG-VLSVILPKAE 151 (161)
T ss_dssp EEEEEEECSSCBCGGGCEEEEETT-EEEEEEEBCG
T ss_pred cEEEEEECCCCcccccEEEEEECC-EEEEEEEcCC
Confidence 455567898 59999999999986 9999976643
No 35
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=69.75 E-value=15 Score=26.21 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=39.1
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC-------ceeCcEEEEEEeC
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS-------SFRKWVLRITVPK 95 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~-------~~~~GvL~I~lpK 95 (110)
.+.+.+.++++.|+++.+---.+.|+++++++ +|.|.-+.... .++.+-|+|++|-
T Consensus 33 ~V~l~qgd~~~~V~i~~~~nl~~~i~~~v~~g-~L~I~~~~~~~~~~~~~~~~~~~~~~v~V~~ 95 (250)
T 3jx8_A 33 DFEYEQSDKAPYLSVTIDENLFDYLVTEVEGG-TLKIYPKSIKKGFNNNSYDLRPTVYKIKSNS 95 (250)
T ss_dssp EEEEEECSSCCEEEEEEEGGGGGGEEEEEETT-EEEEEECBCTTTTTSCBCEEECSCEEEEEEE
T ss_pred EEEEEECCCCceEEEEECccccceEEEEEECC-EEEEEEcCCccccccceeecCCcEEEEEEEc
Confidence 46666765567777777665568999999997 89998765521 1344577777764
No 36
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=66.64 E-value=13 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred cEEEEEEeC-CCCCCceEEEEecCeEEEEEEEecC
Q 041072 48 AQVITLDIL-GIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 48 ~~~i~~dlP-G~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.|.-++.|| +++.+.++-++++| +|+|+-.+..
T Consensus 105 ~F~R~~~LP~~vd~~~i~A~~~nG-vL~I~lPK~~ 138 (151)
T 1gme_A 105 KFVRRFRLLEDAKVEEVKAGLENG-VLTVTVPKAE 138 (151)
T ss_dssp CEEEEEECSSCCCGGGCEEEEETT-EEEEEEECCC
T ss_pred EEEEEEECCCCccccceEEEEECC-EEEEEEEccC
Confidence 456678898 58999999999986 9999876643
No 37
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=62.58 E-value=10 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.6
Q ss_pred EEEEEEeC-CCCCCceEEEE-ecCeEEEEEEEecC
Q 041072 49 QVITLDIL-GIKKDNVKIEV-EENRVLRMRGERKS 81 (110)
Q Consensus 49 ~~i~~dlP-G~~kedi~i~v-~~~~~L~I~g~~~~ 81 (110)
|.=++.|| +++.+.|+-++ ++| +|+|+..+..
T Consensus 118 F~R~~~LP~~Vd~~~i~A~~s~dG-vL~I~lPK~~ 151 (175)
T 2klr_A 118 FHRKYRIPADVDPLTITSSLSSDG-VLTVNGPRKQ 151 (175)
T ss_dssp EEEEEECTTTCCTTTCEEEECTTS-CEEEEEECC-
T ss_pred EEEEEECCCCcChhHeEEEEcCCC-EEEEEEECCC
Confidence 45567898 69999999999 575 9999987754
No 38
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=60.78 E-value=12 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=25.6
Q ss_pred cEEEEEEeCC-CCCCce-EEEEecCeEEEEEEEec
Q 041072 48 AQVITLDILG-IKKDNV-KIEVEENRVLRMRGERK 80 (110)
Q Consensus 48 ~~~i~~dlPG-~~kedi-~i~v~~~~~L~I~g~~~ 80 (110)
.|.-++.||. ++.+.+ +-++++| +|+|+-.+.
T Consensus 82 ~f~R~~~LP~~vd~~~i~~A~~~~G-vL~I~lPK~ 115 (123)
T 3aab_A 82 YVRKVIRLPYNVAKDAEISGKYENG-VLTIRIPIA 115 (123)
T ss_dssp EEEEEEECSSEECTTCCCEEEEETT-EEEEEEEGG
T ss_pred EEEEEEECCCCcCcchhCeeEEcCC-EEEEEEEcC
Confidence 4555678884 899999 9999986 999986554
No 39
>3lyc_A Putative pectinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: MSE; 2.30A {Parabacteroides distasonis}
Probab=58.03 E-value=17 Score=25.73 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=38.1
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC---ceeCcEEEEEEeCc
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS---SFRKWVLRITVPKL 96 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~---~~~~GvL~I~lpK~ 96 (110)
.+.+.+.++++.|+++.+----+.|+++++++ +|.|.-+.... .+..+-++|++|..
T Consensus 27 ~V~l~qgd~~~~V~i~~~~nl~~~v~~~v~~g-~L~I~~~~~~~~~~~~~~~~i~v~V~~p 86 (241)
T 3lyc_A 27 VVNYTQSDAPEGLEIKTDRNIFEKYEFNVENH-KLKIRPKKEFRKHTNFRPTEFMVTANSR 86 (241)
T ss_dssp EEEEEECSSCCEEEEEEEHHHHTTEEEEEETT-EEEEEECGGGCSCSCCCCSCEEEEEEES
T ss_pred EEEEEECCCCceEEEEECccccceEEEEEECC-EEEEEEcCCcccceeecCceEEEEEECC
Confidence 45566664566777776654457899999997 89998766521 24445777777743
No 40
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=55.43 E-value=9.1 Score=24.58 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=27.6
Q ss_pred EECCCcEEEEEEeCCCCCCceEEEEecC----------eEEEEEEEe
Q 041072 43 KETPPAQVITLDILGIKKDNVKIEVEEN----------RVLRMRGER 79 (110)
Q Consensus 43 ~e~~~~~~i~~dlPG~~kedi~i~v~~~----------~~L~I~g~~ 79 (110)
-++...|.|++.||+-.-+.+++.|... |.|+..|.|
T Consensus 32 ~~~~~~Y~itF~~p~~~G~~~ef~v~~~~Y~~L~~Gd~G~Lt~QGTR 78 (100)
T 3rd4_A 32 PEITHYYQVTFRLTTDDRKDLVLNIDKSSYQNIEPEMKGRLFMQGSR 78 (100)
T ss_dssp --CCCEEEEEEEESSSSCEEEEEECCHHHHHTCCTTCEEEEEEETTE
T ss_pred CCCceEEEEEEEecCCCCCeEEEEECHHHcCCCCCCCEEEEEEeeeE
Confidence 3677899999999998888888887531 467776665
No 41
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=47.88 E-value=15 Score=24.11 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=22.5
Q ss_pred eCCCCCCceEEEEecCeEEEEEEEecC
Q 041072 55 ILGIKKDNVKIEVEENRVLRMRGERKS 81 (110)
Q Consensus 55 lPG~~kedi~i~v~~~~~L~I~g~~~~ 81 (110)
.|..++-.|.|.++++ .++++|+-..
T Consensus 2 ~~~~~p~~i~V~v~~G-~VTLsG~Vp~ 27 (132)
T 2kgs_A 2 ASALSLSLLSISRSGN-TVTLIGDFPD 27 (132)
T ss_dssp CCCCCEEEEEEEECSS-EEEEEEEESC
T ss_pred CCcccceeEEEEEECC-EEEEEEECCC
Confidence 4778888999999997 8999999875
No 42
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=42.00 E-value=22 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=20.3
Q ss_pred CCceEEEEecCeEEEEEEEecCCc----------eeCcEEEEEEeC
Q 041072 60 KDNVKIEVEENRVLRMRGERKSSS----------FRKWVLRITVPK 95 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~~~~----------~~~GvL~I~lpK 95 (110)
++.++|+++++ .++|+|.+..-. .++|.|+|+.+.
T Consensus 11 P~gV~V~i~~~-~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~ 55 (177)
T 1rl6_A 11 PAGVTVTVNGN-TVTVKGPKGELTRTFHPDMTITVEGNVITVTRPS 55 (177)
T ss_dssp CTTCEEEEETT-EEEEEETTEEEEEECCTTCEEEEETTEEEEECSC
T ss_pred CCCCEEEEeCC-EEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCC
Confidence 35667777765 777776544211 356666665443
No 43
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=41.69 E-value=24 Score=25.42 Aligned_cols=20 Identities=15% Similarity=0.547 Sum_probs=12.5
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
++.++|+++++ .++|+|.+.
T Consensus 39 P~gV~V~i~~~-~VtVKGPkG 58 (212)
T 1nkw_E 39 PSGVTVNAQDG-VFKVKGPKG 58 (212)
T ss_pred CCCcEEEEeCC-EEEEECCCE
Confidence 35666677664 677776544
No 44
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics, joint center F structural genomics, JCSG; HET: PG4; 2.07A {Bacteroides fragilis nctc 9343}
Probab=41.56 E-value=51 Score=22.99 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=36.0
Q ss_pred eceEEECCC-cEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCC--ceeCcEEEEEEeCcc
Q 041072 39 RAKWKETPP-AQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS--SFRKWVLRITVPKLS 97 (110)
Q Consensus 39 ~vdi~e~~~-~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~--~~~~GvL~I~lpK~~ 97 (110)
.+.+.+.++ ++.|+++-+----+.|+++++++ +|.|.-+.... .+..=.++|++|...
T Consensus 31 ~V~l~qg~~~~~~V~i~g~~nl~~~i~~~v~~g-~L~I~~~~~~~~~~~~~~~i~Vt~p~L~ 91 (221)
T 3pet_A 31 NIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDN-TLFLSIDKSKKVRNFKKMKITITSPTLN 91 (221)
T ss_dssp EEEEEECSSSCCEEEEEEEHHHHTTEEEEEETT-EEEEEECTTCCBSCCTTCEEEEEESCCC
T ss_pred EEEEEECCCCcEEEEEEEChhhcceEEEEEECC-EEEEEEcCCcccCCCCeEEEEEEeCChh
Confidence 466666653 67777776543446899999986 89998654321 123345666666543
No 45
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=38.91 E-value=28 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.0
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
++.++|+++++ .++|+|.+.
T Consensus 20 P~gV~V~i~~~-~VtVKGPkG 39 (100)
T 2cql_A 20 PENVDITLKGR-TVIVKGPRG 39 (100)
T ss_dssp CSSCEEEEETT-EEEEEETTE
T ss_pred CCCCEEEEeCC-EEEEECCCc
Confidence 47788999886 899998654
No 46
>3ljy_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: PGE; 2.41A {Parabacteroides distasonis}
Probab=36.90 E-value=91 Score=21.93 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=33.1
Q ss_pred eceEEECCCcEEEEEEeCCCCCCceEEEEecCeEEEEEEEecCCceeCcEEEEEEe
Q 041072 39 RAKWKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSSFRKWVLRITVP 94 (110)
Q Consensus 39 ~vdi~e~~~~~~i~~dlPG~~kedi~i~v~~~~~L~I~g~~~~~~~~~GvL~I~lp 94 (110)
.|.+.+.++.-.|+++.+----+.|+++++++ +|.|.-+... .++.+-++|+|+
T Consensus 32 ~V~l~qg~~~~~V~i~~~~nl~~~i~~~v~~g-~L~I~~~~~~-~~~~~~~~v~Vt 85 (243)
T 3ljy_A 32 DFNYEQSDDPSTVEVTVDQNLHPYVNIEVKDR-VLTIAFKGAK-VDHFTKFIVKTN 85 (243)
T ss_dssp EEEEEECSSCCEEEEEEEGGGGGGEEEEEETT-EEEEEECSSE-EEECSCEEEEEE
T ss_pred EEEEEECCCCcEEEEEECcchhceEEEEEECC-EEEEEEcCCc-eeCCceEEEEEE
Confidence 45565655332377776655568899999986 8999855432 133344555554
No 47
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=36.35 E-value=31 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCceEEEEecCeEEEEEEEecCCc-----------eeCcEEEEEEeC
Q 041072 60 KDNVKIEVEENRVLRMRGERKSSS-----------FRKWVLRITVPK 95 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~~~~-----------~~~GvL~I~lpK 95 (110)
++.++|+++++ .++|+|.+..-. .++|.|.|+.+.
T Consensus 9 P~gV~v~i~~~-~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~ 54 (178)
T 1vq8_E 9 PEDVDAEQDHL-DITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDE 54 (178)
T ss_dssp CTTCEEEEETT-EEEEEETTEEEEEECCCTTCEEEEETTEEEEECSC
T ss_pred CCCCEEEEeCC-EEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCC
Confidence 46778888775 788887554211 356776666543
No 48
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=36.29 E-value=14 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=17.1
Q ss_pred CceEEEEecCeEEEEEEEecCCceeCcEEEEEEeCccc
Q 041072 61 DNVKIEVEENRVLRMRGERKSSSFRKWVLRITVPKLSE 98 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~~~~~~~~GvL~I~lpK~~~ 98 (110)
.|++++..+| +|+|+ +.||- ++.|-|.+|
T Consensus 28 ~d~D~e~~~g-VLti~-------f~~~~-~~VINkQ~P 56 (106)
T 1ew4_A 28 SDIDCEINGG-VLTIT-------FENGS-KIIINRQEP 56 (106)
T ss_dssp SCCEEEEETT-EEEEE-------CTTSC-EEEEEEETT
T ss_pred CCEeeeccCC-EEEEE-------ECCCC-EEEEeCCch
Confidence 4577777775 77777 65552 344445443
No 49
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=35.28 E-value=30 Score=19.57 Aligned_cols=20 Identities=5% Similarity=0.361 Sum_probs=16.3
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
-.||.|..+++ ++++.|+-+
T Consensus 32 yndinvtwdgd-tvtvegqle 51 (62)
T 2gjh_A 32 YNDINVTWDGD-TVTVEGQLE 51 (62)
T ss_dssp CCSCEEEECSS-CEEEEEECC
T ss_pred cccceeEEcCC-EEEEEeEEc
Confidence 46899999987 899998754
No 50
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=34.82 E-value=35 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=9.5
Q ss_pred CceEEEEecCeEEEEEEEe
Q 041072 61 DNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~ 79 (110)
+.++|+++++ .++|+|.+
T Consensus 13 ~gV~v~i~~~-~v~VkGpk 30 (180)
T 3v2d_H 13 KGVSVEVAPG-RVKVKGPK 30 (180)
T ss_dssp TTCEEEEETT-EEEEECSS
T ss_pred CCcEEEEeCC-EEEEEeCC
Confidence 4555555553 55555544
No 51
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=34.68 E-value=28 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCCCceEEEEecCeEEEEEEEecCCc---eeCcEEEE
Q 041072 58 IKKDNVKIEVEENRVLRMRGERKSSS---FRKWVLRI 91 (110)
Q Consensus 58 ~~kedi~i~v~~~~~L~I~g~~~~~~---~~~GvL~I 91 (110)
|+.+.|.++...| .|.|+|+.=.-. -++|.+.|
T Consensus 18 Fd~e~i~L~T~~G-~L~IkG~~L~I~~L~lE~Gev~I 53 (71)
T 2ks0_A 18 FDPKEILLETIQG-VLSIKGEKLGIKHLDLKAGQVEV 53 (71)
T ss_dssp ECSSEEEEEETTE-EEEEEEECCC-----CCTTCEEE
T ss_pred ECCCEEEEEeCce-EEEEEcCCcEEeEeecCccEEEE
Confidence 5677888888885 899998864311 35565555
No 52
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.53 E-value=46 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=13.4
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
++.++|+++++ .++|+|.+.
T Consensus 14 P~gV~v~i~~~-~V~VkGpkG 33 (184)
T 3j21_F 14 PEGVEVTVEGY-KVKVKGPKG 33 (184)
T ss_dssp CSSCEEEESSS-EEEEECSSC
T ss_pred CCCcEEEEeCC-EEEEEcCCe
Confidence 36777777664 777776654
No 53
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=29.23 E-value=55 Score=21.65 Aligned_cols=10 Identities=0% Similarity=-0.060 Sum_probs=5.6
Q ss_pred eceEEECCCc
Q 041072 39 RAKWKETPPA 48 (110)
Q Consensus 39 ~vdi~e~~~~ 48 (110)
.|++++.+..
T Consensus 25 ~V~Ly~g~~k 34 (140)
T 2hth_B 25 GVRIYDGEEK 34 (140)
T ss_dssp EEEEEETTCS
T ss_pred CEEEecCCCC
Confidence 3666665544
No 54
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=28.25 E-value=22 Score=23.54 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=8.2
Q ss_pred eEEEEecCeEEEEE
Q 041072 63 VKIEVEENRVLRMR 76 (110)
Q Consensus 63 i~i~v~~~~~L~I~ 76 (110)
++++..+| +|+|+
T Consensus 49 ~Dve~~~g-VLti~ 61 (123)
T 3oeq_A 49 PDVELSHG-VMTLE 61 (123)
T ss_dssp CEEEECSS-EEEEE
T ss_pred eEEEccCC-EEEEE
Confidence 56666664 77776
No 55
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*
Probab=25.71 E-value=2.6e+02 Score=22.37 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCcEEEEEEeCCCCC-CceEEE-EecCeEEEEEEEecCCceeCcEEEEEEeCcc
Q 041072 46 PPAQVITLDILGIKK-DNVKIE-VEENRVLRMRGERKSSSFRKWVLRITVPKLS 97 (110)
Q Consensus 46 ~~~~~i~~dlPG~~k-edi~i~-v~~~~~L~I~g~~~~~~~~~GvL~I~lpK~~ 97 (110)
++.+.+.+++.|++. ...++. +++. ...+.........++|.|+++||...
T Consensus 456 ~~~~~v~l~l~g~~~~~~~~v~t~~~~-~~~~~~~~~~~~~~~~~~~~tLPp~S 508 (519)
T 2e4t_A 456 DQPTTFNFSIDSSKNYTIGNVWAFDRG-SSNITQRTPIVNIKDNTFTYTVPALT 508 (519)
T ss_dssp SSCEEEEEEEECSSCCCCEEEEEEETT-EEEEEEEEEECCCBTTEEEEEECSSE
T ss_pred CCCeEEEEEEeCCccceEEEEEEEeCC-CcCccccCCcceeeCCeEEEEECCcE
Confidence 356677777788753 223332 2332 23332222222367899999999765
No 56
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=23.91 E-value=1.5e+02 Score=19.15 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=23.5
Q ss_pred eceEEECC------CcEEEEEEeCCCCC---C----ceEEEEecCeEEEEEEE
Q 041072 39 RAKWKETP------PAQVITLDILGIKK---D----NVKIEVEENRVLRMRGE 78 (110)
Q Consensus 39 ~vdi~e~~------~~~~i~~dlPG~~k---e----di~i~v~~~~~L~I~g~ 78 (110)
.++|++.+ ..+.=++.+.|+.+ . ++.++++.++.|.|++.
T Consensus 48 ~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL~V~a~ 100 (152)
T 2op6_A 48 SIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAE 100 (152)
T ss_dssp EEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEeCCccCccCCEeEEEEEECCCCCCCCCceEEEEEEECCCcEEEEEEE
Confidence 47788775 34455667776643 1 23444455557777765
No 57
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.47 E-value=86 Score=19.37 Aligned_cols=20 Identities=5% Similarity=0.406 Sum_probs=16.0
Q ss_pred CCceEEEEecCeEEEEEEEec
Q 041072 60 KDNVKIEVEENRVLRMRGERK 80 (110)
Q Consensus 60 kedi~i~v~~~~~L~I~g~~~ 80 (110)
-.||.|.++++ .+++.|+-+
T Consensus 76 yndinvtfdgd-tvtvegqle 95 (106)
T 1qys_A 76 YNDINVTFDGD-TVTVEGQLE 95 (106)
T ss_dssp CCEEEEEEETT-EEEEEEEC-
T ss_pred CcceeEEEcCC-eEEEEeEEc
Confidence 46899999997 899998754
No 58
>3lso_A Putative membrane anchored protein; MCSG, PSI-2, structural genomic protein structure initiative; HET: MLZ; 2.75A {Corynebacterium diphtheriae} PDB: 3lso_B*
Probab=22.43 E-value=27 Score=27.88 Aligned_cols=9 Identities=33% Similarity=0.382 Sum_probs=6.7
Q ss_pred eeCcEEEEE
Q 041072 84 FRKWVLRIT 92 (110)
Q Consensus 84 ~~~GvL~I~ 92 (110)
..||||+|.
T Consensus 113 iSNGiLsI~ 121 (489)
T 3lso_A 113 LSNGVLSIN 121 (489)
T ss_dssp EETTEEEEE
T ss_pred eecceEEec
Confidence 578888776
No 59
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=22.43 E-value=1.1e+02 Score=20.16 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=9.3
Q ss_pred CceEEEEecCeEEEEE
Q 041072 61 DNVKIEVEENRVLRMR 76 (110)
Q Consensus 61 edi~i~v~~~~~L~I~ 76 (110)
.|++++..+| +|+|+
T Consensus 40 ~d~D~e~~~g-VLti~ 54 (129)
T 3t3l_A 40 EDYDVSFGSG-VLTVK 54 (129)
T ss_dssp TTCEEEEETT-EEEEE
T ss_pred cceeeecCCC-EEEEE
Confidence 4566666664 66666
No 60
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=21.92 E-value=1.6e+02 Score=18.70 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=23.7
Q ss_pred EEECCCcEEEEEEe-CCCCCCceEEEEecCeEEEEE
Q 041072 42 WKETPPAQVITLDI-LGIKKDNVKIEVEENRVLRMR 76 (110)
Q Consensus 42 i~e~~~~~~i~~dl-PG~~kedi~i~v~~~~~L~I~ 76 (110)
|.+.++.+.|.+.+ ||-+++.| ..+.++ .|.|+
T Consensus 8 ~~~~~~~v~l~v~V~P~A~r~~I-~g~~~~-~LkV~ 41 (108)
T 1n91_A 8 VTVNDDGLVLRLYIQPKASRDSI-VGLHGD-EVKVA 41 (108)
T ss_dssp EEECSSEEEEEEEEECSSSSCEE-EEECSS-CEEEE
T ss_pred EEECCCeEEEEEEEeeCCCccee-ecccCC-EEEEE
Confidence 45667788887776 88888877 346665 67776
No 61
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=21.24 E-value=38 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=7.9
Q ss_pred CceEEEEecCeEEEEEEEe
Q 041072 61 DNVKIEVEENRVLRMRGER 79 (110)
Q Consensus 61 edi~i~v~~~~~L~I~g~~ 79 (110)
+.++|+++++ .++|+|.+
T Consensus 12 ~gV~v~i~~~-~V~VkGpk 29 (176)
T 3r8s_G 12 AGVDVKINGQ-VITIKGKN 29 (176)
T ss_dssp TTCCCEESSS-EEECCBTT
T ss_pred CCcEEEEeCC-EEEEEcCC
Confidence 3444444443 44444443
No 62
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.11 E-value=91 Score=18.49 Aligned_cols=30 Identities=10% Similarity=0.358 Sum_probs=24.7
Q ss_pred eEEECCCcEEEEEEeCCCCCCceEEEEecC
Q 041072 41 KWKETPPAQVITLDILGIKKDNVKIEVEEN 70 (110)
Q Consensus 41 di~e~~~~~~i~~dlPG~~kedi~i~v~~~ 70 (110)
-|.+..+.|.|.+.+=|++-..|.+.-.+|
T Consensus 7 tWtDrtG~F~VeA~flg~~dgki~LhK~nG 36 (68)
T 2hbp_A 7 LWVDRSGTFKVDAEFIGCAKGKIHLHKANG 36 (68)
T ss_dssp EEEBSSSCCEEEEEEEEEETTEEEEECTTS
T ss_pred EEEcCCCCeEEEEEEEEEeCCEEEEEecCC
Confidence 477888999999999999877777777665
No 63
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*
Probab=20.49 E-value=3.3e+02 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.8
Q ss_pred eeCcEEEEEEeCcc
Q 041072 84 FRKWVLRITVPKLS 97 (110)
Q Consensus 84 ~~~GvL~I~lpK~~ 97 (110)
.++|.|+++||...
T Consensus 496 ~~~~~l~~tLPp~S 509 (524)
T 2yih_A 496 ISGNRFTYTVPPLT 509 (524)
T ss_dssp CBTTEEEEEECTTE
T ss_pred ccCCeEEEEECCcE
Confidence 57899999999765
Done!