RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041072
(110 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 62.7 bits (153), Expect = 5e-14
Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 36/131 (27%)
Query: 14 PFEILKQTPLIIPKGVDRHQTLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVL 73
PF+ + I G AR WKETP A V D+ G+KK+ VK+EVE+ VL
Sbjct: 20 PFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVL 79
Query: 74 RMRGERKSS-----------------------------------SFRKWVLRITVPKLSE 98
+ GER VL +TVPK +E
Sbjct: 80 VVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK-AE 138
Query: 99 EKKRHPKVINI 109
KK K I I
Sbjct: 139 VKKPEVKAIQI 149
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 49.9 bits (120), Expect = 2e-09
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 32/93 (34%)
Query: 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERK------------SSSFRKW-- 87
E V+ D+ G K+ +K V L + ER+ RK
Sbjct: 29 MYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIR 88
Query: 88 ------------------VLRITVPKLSEEKKR 102
VL I +P +
Sbjct: 89 LPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 47.0 bits (112), Expect = 5e-08
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 40/105 (38%)
Query: 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSS------------------- 82
E + + G+ K+++ + + L +R +R
Sbjct: 61 IIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEI 119
Query: 83 -----------------SFRKWVLRITVPKLSEEKKRHPKVINID 110
F VL + +PK K INI+
Sbjct: 120 YRTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINIE 161
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 45.9 bits (110), Expect = 6e-08
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 42 WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRGERKSSS 83
KE V+ D+ GI +++++++ +L +RGERKS S
Sbjct: 9 IKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSES 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.013
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 46/134 (34%)
Query: 1 MMTILMIM--ASQ------AKPFEILKQ---------TPLIIPKGVDRHQTLVLARAKWK 43
+T+L + + P IL+ +P++ + + Q
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 44 ETPPAQ-------------VIT-----LDILGIKKDNVKIE--VEENRVLRMRGERK--- 80
P + V++ L L + K ++++R+ ERK
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFS-ERKLKF 416
Query: 81 SSSFRKWVLRITVP 94
S+ F L + P
Sbjct: 417 SNRF----LPVASP 426
Score = 28.1 bits (62), Expect = 0.70
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 28 GVDRHQTLVLARAKWKETPPAQVITLDILG-----IKKDN-VKIEV----EENRVLR--- 74
G+D ++T A+ W A D G I +N V + + E+ + +R
Sbjct: 1632 GMDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 75 --MRGERKS--SSFRKWVLRITVPKLSEEKKRHPK 105
M E + + + + R K
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.033
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 46/143 (32%)
Query: 8 MASQAKPFEILKQTPL---IIPKGVDRHQTLVLARAK-WKETPPAQVIT-----LDIL-- 56
Q P E+L P II + + LA WK ++ T L++L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 57 ----------GIKKDNVKI----------EVEENRVLRMRGE-RKSSSFRKWV--LRITV 93
+ + I +V ++ V+ + + K S K I++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 94 P--------KLSEEKKRHPKVIN 108
P KL E H +++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVD 451
Score = 26.0 bits (56), Expect = 3.8
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 22 PLIIPKGVDRHQTLVLARAKWKETPPAQVITLD-ILGIKKDNVKIEV 67
+ V R Q + R E PA+ + +D +LG K V ++V
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 27.8 bits (62), Expect = 0.34
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 43 KETPPAQVITLDILGIKKDNVKIEVEENRVL-----RMRGERKSSSFRKWVLRITVPK 95
P + LD+ + + ++V + V R + R++ R +P
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPP 64
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 27.7 bits (62), Expect = 0.36
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 43 KETPPAQVITLDILGIKKDNVKIEVEENRVL-----RMRGERKSSSFRKWVLRITVPK 95
T ++LD+ D + ++ ++ V R + R + + T+P
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPP 60
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 26.7 bits (59), Expect = 0.92
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 28/95 (29%)
Query: 43 KETPPAQVITLDILGIKKDNVKIEVEEN-RVLRMRGERKSSSFRKW-------------- 87
+ VI LD+ +++ ++V+E+ + + +
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV 67
Query: 88 -------------VLRITVPKLSEEKKRHPKVINI 109
+L + PK+ I
Sbjct: 68 DQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 26.4 bits (58), Expect = 1.5
Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 30/100 (30%)
Query: 38 ARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVL-----RMRGERKSSSFRKW----- 87
++ + + LD+ + +K++V + + R + R++
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 123
Query: 88 ------------------VLRITVPKLSEEKKRHPKVINI 109
VL + P+ + I I
Sbjct: 124 IPADVDPLTITSSLSSDGVLTVNGPRKQVSGP--ERTIPI 161
>3p0r_A Azoreductase; structural genomics, center for structural genomics
of infec diseases, csgid, oxidoreductase; 1.80A
{Bacillus anthracis}
Length = 211
Score = 26.1 bits (57), Expect = 2.4
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 19/58 (32%)
Query: 1 MMTILMIMASQAKPFEILKQTPLIIPKGVDRHQTLVLAR---AKWKETPP-AQVITLD 54
M +L + A+ + ++ ++ L A +KE P V+ LD
Sbjct: 4 MTKVLFVKAN---------------NRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 46
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa,
nitroreductase, flavodoxin, oxidoreductase; HET: FMN
NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A*
2v9c_A* 3keg_A*
Length = 212
Score = 25.7 bits (56), Expect = 3.5
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 20/59 (33%)
Query: 1 MMTILMIMASQAKPFEILKQTPLIIPKGVDRHQTLVLARA---KWKETPP-AQVITLDI 55
M IL + AS P+G +R Q+ LA ++E P A+V ++
Sbjct: 1 MSRILAVHAS---------------PRG-ERSQSRRLAEVFLAAYREAHPQARVARREV 43
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.15.1.3
Length = 134
Score = 25.4 bits (55), Expect = 4.1
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 34 TLVLARAKWKETPPAQV-ITLDILGIKKDNVKIEVEENRV 72
L + E P V + + + I +D ++ E
Sbjct: 16 NLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 25.4 bits (55), Expect = 5.3
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 1 MMTILMIMASQAKPFEILKQTPLIIPKGVDRHQTLVLAR---AKWKETPPAQVITLDILG 57
+ +S + +TP +IP +D+ + R K K + PA + +
Sbjct: 229 IQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPA 288
Query: 58 IKKDNVK 64
++ K
Sbjct: 289 LQGSTTK 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.383
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,645,590
Number of extensions: 87848
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 29
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)