RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041072
         (110 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 36/131 (27%)

Query: 14  PFEILKQTPLIIPKGVDRHQTLVLARAKWKETPPAQVITLDILGIKKDNVKIEVEENRVL 73
           PF+  +     I  G         AR  WKETP A V   D+ G+KK+ VK+EVE+  VL
Sbjct: 19  PFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVL 78

Query: 74  RMRGERKSSSFRKW-----------------------------------VLRITVPKLSE 98
            + GER      K                                    VL +TVPK  E
Sbjct: 79  VVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA-E 137

Query: 99  EKKRHPKVINI 109
            KK   K I I
Sbjct: 138 VKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 30.4 bits (68), Expect = 0.020
 Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 38/104 (36%)

Query: 42  WKETPPAQVITLDILGIKKDNVKIEVEENRVLRMRG------------------------ 77
             E      +   + G+ K+++ +    + +                             
Sbjct: 15  IIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIY 74

Query: 78  -----------ERKSSSFRKWVLRITVPKLSEEKKRHPKVINID 110
                      E  S+ F   VL + +PK         K INI+
Sbjct: 75  RTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINIE 115


>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 305

 Score = 26.7 bits (57), Expect = 0.57
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 35  LVLARAKWKETPPAQVITLDILGIKKDNVKIEVEE 69
           ++         PP      D++ I +DN K E+E+
Sbjct: 265 MLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 299


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
          USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 42 WKETPPAQV-ITLDILGIKKDNVKIEVEENRV 72
            E  P  V + + +  I +D  ++   E   
Sbjct: 24 SYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,345
Number of extensions: 16424
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 12
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)