BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041074
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 199/438 (45%), Gaps = 39/438 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
A+++G+++G W M KR L ++DD VF H FA
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
L + VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
EEQ G D HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 199/438 (45%), Gaps = 39/438 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
A+++G+++G W M KR L ++DD VF H FA
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
L + VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
EEQ G D HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF H FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 198/434 (45%), Gaps = 39/434 (8%)
Query: 11 NKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYK 70
+K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W + Y
Sbjct: 15 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 71 MSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQC 130
++FG+ G F + L ++E V+ V FQ
Sbjct: 75 LAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHVAFQG 114
Query: 131 VFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGY 190
FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D++GG
Sbjct: 115 SFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGT 174
Query: 191 VIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPYTANI 250
V+H+++ IAG AY +G R +E F P+N+ FN G TAN
Sbjct: 175 VVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE 234
Query: 251 DSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAI 310
+++A +NT + A ++L W + + KPS++GA G I GLV +TP G + A+
Sbjct: 235 IAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGAL 294
Query: 311 VMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKLCSL 369
++G+++G W M KR L ++DD VF H FA L +
Sbjct: 295 IIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV 349
Query: 370 FLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQL 427
VT Q+L QL A I W+ VV I + + + LR+ EEQ
Sbjct: 350 GFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 399
Query: 428 LIGDDA-VHGEEAY 440
G D HGE AY
Sbjct: 400 REGLDVNSHGENAY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+ +++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVEINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF H FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 198/438 (45%), Gaps = 39/438 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ N G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
A+++G+++G W M KR L ++DD VF H FA
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
L + VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
EEQ G D HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 198/438 (45%), Gaps = 39/438 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ A IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
A+++G+++G W M KR L ++DD VF H FA
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
L + VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
EEQ G D HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+ +++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF H FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+ +++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVFINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF H FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 197/438 (44%), Gaps = 39/438 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ A IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ N G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
A+++G+++G W M KR L ++DD VF H FA
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
L + VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
EEQ G D HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 197/437 (45%), Gaps = 37/437 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ MI LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++FG+ G F + L ++E V+ V
Sbjct: 62 YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+ +++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + KPS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
+ VT Q+L QL A I W+ VV I + + + LR+ E
Sbjct: 338 GGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPE 387
Query: 425 EQLLIGDDA-VHGEEAY 440
EQ G D HGE AY
Sbjct: 388 EQEREGLDVNSHGENAY 404
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/438 (28%), Positives = 195/438 (44%), Gaps = 51/438 (11%)
Query: 10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAY 69
++ G+ AW + S LV L VPG+ Y +V++K AVN ++ + V+ W + Y
Sbjct: 1 MSDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 70 KMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQ 129
+SFG+ + G G + + E F + +Q
Sbjct: 60 SVSFGNDISGIIG------GLNYALLSGVKGEDLLF--------------------MMYQ 93
Query: 130 CVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGG 189
+FAA+T+ IL ++ R + +++ LWLTF Y A LWGGG+L G +D++GG
Sbjct: 94 MMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGG 153
Query: 190 YVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPYTAN 249
V+H+SSG A A +G R+ + P+++ FNGG AN
Sbjct: 154 MVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN 213
Query: 250 IDSSMAVLNTNICAATSLLVWT---WLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
+ AV+ TN AA + VW W+ KP +G V G I GL ITP AG V
Sbjct: 214 DVAINAVVVTNTSAAVAGFVWMVIGWIK----GKPGSLGIVSGAIAGLAAITPAAGFVDV 269
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
AIV+G+++G V + M F K+ KID++L + H A P++
Sbjct: 270 KGAIVIGLVAGIVCYLAMDFRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEV 324
Query: 367 CSLF-LPVTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEE 425
L N + ++ QL A + +VT I+ ++ + LR++ +
Sbjct: 325 NGYAGLLFGNPQL----------LVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQ 374
Query: 426 QLLIG-DDAVHGEEAYAL 442
+ +G D + H E AY L
Sbjct: 375 EEYVGLDLSQHEEVAYTL 392
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 187/418 (44%), Gaps = 36/418 (8%)
Query: 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
P +K DNA+ I LV ++PG+ + YG +++ K ++ FA V I W
Sbjct: 2 PAVADKADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWVV 61
Query: 67 WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
+ Y ++ G+ G F + L ++E V V
Sbjct: 62 YGYSLASGE-------------GNNFFGNINWLXLK-------NIELTAVXGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
FQ FA IT+ ++ G++ R+ A + FV +WLT SY A +WGGG L G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHXVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
+GG V+H+++ IAG AY +G R +E F P+N+ FN G
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
TAN +++A +NT + A ++L W + + PS++GA G I GLV +TP G +
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPKL 366
A+++G+++G + + + + L ++DD VF H FA L
Sbjct: 282 GGALIIGVVAGLAGLWGVTXLKR----LLRVDDPCDVFGVHGVCGIVGCIXTGIFAASSL 337
Query: 367 CSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRM 422
+ VT Q+L QL A I W+ VV I + + + LR+
Sbjct: 338 GGVGFAEGVTXGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 385
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 19/223 (8%)
Query: 132 FAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYV 191
FA T +I G+VLGR+ + + A + L++ Y + + + G D +G
Sbjct: 85 FAVATGLIAMGAVLGRLRVFQY-ALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIA 143
Query: 192 IH-------LSSGIAGFTAAYWVGP-RSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGG 243
IH L IA TAA P S +RF + F
Sbjct: 144 IHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIVPFE-- 201
Query: 244 DPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFK-KPSVIGAVQGMITGLVCITPGAG 302
++NT + + L +L +F K K S++ + G V I
Sbjct: 202 -------QMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCN 254
Query: 303 LVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFH 345
+V A V+G+L G++ +FI K DT V +
Sbjct: 255 IVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHN 297
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 256 VLNTNICAATSLLVWTWLDVIFFK-KPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGI 314
++NT + + L +L +F K K S++ + G V I +V A V+G+
Sbjct: 208 IVNTLLALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGL 267
Query: 315 LSGSVPWFTMMFIHKRWTLLQKIDDTLSVFH 345
L G++ +FI K DT V +
Sbjct: 268 LGGAISVVGFVFIQPMLESKAKTIDTCGVHN 298
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 19/223 (8%)
Query: 132 FAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYV 191
FA T +I G+VLGR+ + + A + L++ Y + + + G D +G
Sbjct: 80 FAVATGLIAMGAVLGRLRVFQY-ALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIA 138
Query: 192 IH-------LSSGIAGFTAAYWVGP-RSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGG 243
IH L IA TAA P S +RF + F
Sbjct: 139 IHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIVPFE-- 196
Query: 244 DPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFK-KPSVIGAVQGMITGLVCITPGAG 302
++NT + + L +L +F K K S++ + G V I
Sbjct: 197 -------QMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCN 249
Query: 303 LVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFH 345
+V A V+G+L G++ +FI K DT V +
Sbjct: 250 IVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHN 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,956,732
Number of Sequences: 62578
Number of extensions: 494145
Number of successful extensions: 1161
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 33
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)