Query 041074
Match_columns 452
No_of_seqs 140 out of 1348
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 2E-111 4E-116 855.2 36.2 406 10-446 1-408 (409)
2 KOG0682 Ammonia permease [Inor 100.0 2E-108 3E-113 842.4 32.3 416 4-444 22-446 (500)
3 PRK10666 ammonium transporter; 100.0 1E-106 3E-111 838.4 36.1 402 8-442 25-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 3E-103 7E-108 810.0 35.7 397 15-440 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 2E-102 5E-107 802.7 36.5 389 12-443 2-404 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 1.9E-94 4.1E-99 748.6 19.7 390 16-440 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 2.2E-45 4.8E-50 362.5 16.9 297 123-428 116-423 (442)
8 PF00909 Ammonium_transp: Ammo 79.4 20 0.00043 37.7 11.4 144 7-210 182-328 (399)
9 PRK11624 cdsA CDP-diglyceride 75.9 10 0.00022 38.2 7.7 92 256-348 154-258 (285)
10 PF01891 CbiM: Cobalt uptake s 74.2 28 0.00061 33.0 9.9 87 188-297 61-147 (205)
11 TIGR00836 amt ammonium transpo 72.8 78 0.0017 33.5 13.6 143 8-210 189-333 (403)
12 PF01148 CTP_transf_1: Cytidyl 68.5 6.1 0.00013 38.0 4.0 67 281-348 161-236 (259)
13 PF06946 Phage_holin_5: Phage 67.3 31 0.00068 28.9 7.3 59 279-339 33-92 (93)
14 TIGR03644 marine_trans_1 proba 64.2 2E+02 0.0044 30.5 15.9 139 9-208 199-344 (404)
15 PLN02594 phosphatidate cytidyl 54.2 8.5 0.00018 39.7 2.2 42 306-348 235-276 (342)
16 PRK10666 ammonium transporter; 47.5 3.3E+02 0.0071 29.2 12.9 58 145-209 298-356 (428)
17 COG0575 CdsA CDP-diglyceride s 44.9 20 0.00044 35.5 3.2 80 268-348 148-241 (265)
18 PRK10712 PTS system fructose-s 40.8 1.2E+02 0.0026 33.7 8.6 104 221-342 236-344 (563)
19 PRK08319 cobalt transport prot 39.3 3.6E+02 0.0079 26.0 11.2 29 177-211 56-84 (224)
20 PLN02953 phosphatidate cytidyl 38.9 35 0.00076 36.0 3.9 88 260-348 275-374 (403)
21 PF14074 DUF4257: Protein of u 38.1 19 0.00042 29.5 1.5 59 261-319 4-75 (82)
22 PF06570 DUF1129: Protein of u 38.1 92 0.002 29.5 6.4 111 221-339 76-205 (206)
23 TIGR01594 holin_lambda phage h 37.8 66 0.0014 27.7 4.8 56 284-339 47-107 (107)
24 PRK06433 NADH dehydrogenase su 36.6 50 0.0011 27.4 3.7 41 387-430 47-87 (88)
25 PF06738 DUF1212: Protein of u 35.5 1.1E+02 0.0023 28.4 6.4 70 219-299 99-170 (193)
26 COG1263 PtsG Phosphotransferas 33.8 5.6E+02 0.012 27.0 12.0 25 394-418 352-376 (393)
27 PF12270 Cyt_c_ox_IV: Cytochro 32.2 1.7E+02 0.0036 26.5 6.6 44 161-212 18-63 (137)
28 PRK10457 hypothetical protein; 30.0 1.1E+02 0.0024 25.0 4.8 36 287-322 8-45 (82)
29 PRK04032 hypothetical protein; 28.6 24 0.00051 32.6 0.6 33 306-339 67-99 (159)
30 TIGR00123 cbiM cobalamin biosy 28.6 4.7E+02 0.01 25.1 9.6 121 187-330 63-207 (214)
31 PF04657 DUF606: Protein of un 28.4 3.1E+02 0.0067 24.4 7.8 85 306-420 30-114 (138)
32 COG4120 ABC-type uncharacteriz 27.3 37 0.0008 33.9 1.7 49 287-339 37-87 (293)
33 PRK11909 cobalt transport prot 27.0 6E+02 0.013 24.8 12.6 22 309-330 191-212 (230)
34 PRK10263 DNA translocase FtsK; 25.0 3.6E+02 0.0078 33.1 9.5 16 347-362 140-155 (1355)
35 PF09877 DUF2104: Predicted me 24.9 1.6E+02 0.0034 25.0 4.8 57 261-317 10-74 (99)
36 PF06210 DUF1003: Protein of u 23.8 2E+02 0.0044 24.7 5.5 44 231-274 11-55 (108)
37 PF06679 DUF1180: Protein of u 23.8 1E+02 0.0022 28.6 3.9 43 407-450 107-152 (163)
38 PF01102 Glycophorin_A: Glycop 23.1 90 0.002 27.5 3.2 30 308-337 67-97 (122)
39 TIGR01427 PTS_IIC_fructo PTS s 23.0 4.3E+02 0.0094 27.4 8.7 48 273-326 82-129 (346)
40 PRK06265 cobalt transport prot 22.3 6.6E+02 0.014 23.7 10.6 40 257-297 102-141 (199)
41 PRK06814 acylglycerophosphoeth 21.8 8.2E+02 0.018 28.9 11.9 18 224-241 228-245 (1140)
42 PF11023 DUF2614: Protein of u 21.0 2E+02 0.0044 25.0 4.8 43 28-70 18-63 (114)
43 PRK11375 allantoin permease; P 20.8 2.2E+02 0.0047 30.8 6.3 29 402-430 456-484 (484)
44 COG5070 VRG4 Nucleotide-sugar 20.4 1.7E+02 0.0037 28.8 4.8 63 260-323 224-297 (309)
45 PRK07331 cobalt transport prot 20.0 6.3E+02 0.014 26.0 9.1 22 187-211 61-82 (322)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-111 Score=855.22 Aligned_cols=406 Identities=37% Similarity=0.687 Sum_probs=374.5
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccch
Q 041074 10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALG 89 (452)
Q Consensus 10 ~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~ 89 (452)
+|++|++|+|+|+.|| ++||||++|+|+|++||||++|+++|+++++++++++|+++||+++||++.++|+|+...+
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~-- 77 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQF-- 77 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHH--
Confidence 4789999999999999 9999999999999999999999999999999999999999999999998668999987532
Q ss_pred hhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 041074 90 QKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGA 169 (452)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~a 169 (452)
+++.....++ ....++|++++++||++||++|++|++|+++||+|+++|++|+++|.+++|||++
T Consensus 78 ---~~~~~~~~~~------------~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~a 142 (409)
T COG0004 78 ---FLNGLGFAAV------------AGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVA 142 (409)
T ss_pred ---hccCcccccc------------CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Confidence 1111111110 0113589999999999999999999999999999999999999999999999999
Q ss_pred ceee-ccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q 041074 170 FSLW-GGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTA 248 (452)
Q Consensus 170 hwvW-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~ 248 (452)
||+| ++|||.++|++|||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||+++.
T Consensus 143 hWvWggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~ 222 (409)
T COG0004 143 HWVWGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAA 222 (409)
T ss_pred eeEecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhh
Confidence 9999 677999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHH
Q 041074 249 NIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIH 328 (452)
Q Consensus 249 ~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~ 328 (452)
+.++..+++||++|+++++++|++++++++||+|+..++||++||||+|||+|++|+||+|++||+++|++|+++.++++
T Consensus 223 ~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk 302 (409)
T COG0004 223 NGVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLK 302 (409)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 041074 329 KRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTS 408 (452)
Q Consensus 329 ~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~ 408 (452)
|+ +|+|||+|++++||++|+||++++|+|++++.. ...|.+++ +++|++.|+.+++++.+|++++|+
T Consensus 303 ~~----l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~-------~~~G~~~~--~~~~l~~Q~~~v~~~~~~~~v~t~ 369 (409)
T COG0004 303 KK----LGVDDALDVFGVHGVGGIVGAILTGIFAAPAVG-------GGGGLFYG--GGVQLGVQLLGVLVTIVYAFVVTF 369 (409)
T ss_pred Hh----cCCCCcccceeccchhhHHHHHHHHHhcCcccc-------ccCccccc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 699999999999999999999999999998651 12355553 789999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHhcC-ChhhcCcccccccCCC
Q 041074 409 IICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALWGDG 446 (452)
Q Consensus 409 i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~~~~ 446 (452)
++++++|++.+||||||||++| |.+||||++|++.+..
T Consensus 370 ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~~ 408 (409)
T COG0004 370 IILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEAT 408 (409)
T ss_pred HHHHHHHhccCCCCCHHHHhhCCChHHhccccccccccc
Confidence 9999999999999999999999 9999999999876543
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-108 Score=842.43 Aligned_cols=416 Identities=36% Similarity=0.566 Sum_probs=381.3
Q ss_pred CCccccccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCC-CCCccc
Q 041074 4 AAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDK-LLPFWG 82 (452)
Q Consensus 4 ~~~~~~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~-~~~fiG 82 (452)
++.|+.+|..|+.|++.++++| |.|||||+|||+|+||+||++|+|+||+++.+++.++||++||+||||++ .|+|||
T Consensus 22 ~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~n~FiG 100 (500)
T KOG0682|consen 22 KFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGFIG 100 (500)
T ss_pred ccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCCcee
Confidence 4677888999999999999999 99999999999999999999999999999999999999999999999998 799999
Q ss_pred CCCccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 041074 83 KAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLT 162 (452)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~ 162 (452)
+.+++ +.+. ++.++ ...+++|++.+++||++||+++++|++||++||.|+++|++|+++|.+
T Consensus 101 ~~~~F-~~~~------~~g~~-----------~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~t 162 (500)
T KOG0682|consen 101 KLDFF-GLRN------VSGDP-----------SSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTT 162 (500)
T ss_pred ecccc-cccc------CCCCc-----------CCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHH
Confidence 98752 2211 11110 011228899999999999999999999999999999999999999999
Q ss_pred hhhccccceee-ccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCC---CCCCCCCcHHHHHHHHHHHHHhhh
Q 041074 163 FSYTVGAFSLW-GGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKD---RERFPPNNVIMMLAGAGLLWMGWA 238 (452)
Q Consensus 163 ~vYp~~ahwvW-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~n~~~~~lG~~lLw~gW~ 238 (452)
+||||++||+| ++||++++|++|||||.+||++||+.||++++++|||++|+ ..+++|||+++++||+++||+||+
T Consensus 163 lVY~~~a~W~W~~~Gw~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl 242 (500)
T KOG0682|consen 163 LVYCPVAHWVWSPNGWLYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWL 242 (500)
T ss_pred hcccccceeeecCCceeeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHH
Confidence 99999999999 79999999999999999999999999999999999999973 458899999999999999999999
Q ss_pred hhccCCCCCcCcchh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhc
Q 041074 239 GFNGGDPYTANIDSS-MAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSG 317 (452)
Q Consensus 239 gFN~gs~~~~~~~~~-~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag 317 (452)
+||+||.++++.+.. ++++||.||++.+++||++++++++||||+..+|||+|+|||||||+|++++||+|+++|+++|
T Consensus 243 ~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~ 322 (500)
T KOG0682|consen 243 GFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAG 322 (500)
T ss_pred ccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHH
Confidence 999999999988887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcc-cCCCCccccCCchhHHHHHHHHH
Q 041074 318 SVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPV-TNSRGGVYGGSGGIQILKQLAGA 396 (452)
Q Consensus 318 ~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~-~~~~G~~~g~~~~~ql~~Ql~g~ 396 (452)
++|++..++ ++|+|||||+|++++||+||+||.|++|+|+.+.+....+.. +..+|.++++ +++|++.|++++
T Consensus 323 ~~~~~~~kL-----~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~-~~kqLg~Qla~i 396 (500)
T KOG0682|consen 323 LVCNAANKL-----KERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGH-GFKQLGYQLAGI 396 (500)
T ss_pred HHHHHHHHH-----HHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecc-hHHHHHHHHHHH
Confidence 999887654 445799999999999999999999999999999877665543 2446888775 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHhcC-ChhhcCcccccccC
Q 041074 397 AFIIGWNVVVTSIICVIINKVIP-LRMTEEQLLIG-DDAVHGEEAYALWG 444 (452)
Q Consensus 397 ~~~~~~s~~~~~i~~~il~~~~~-lRv~~e~E~~G-D~~~hg~~ay~~~~ 444 (452)
+++.+|+++++.++++++||+.+ ||+|+|+|+.| |..||||.+|+..+
T Consensus 397 ~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~ 446 (500)
T KOG0682|consen 397 LAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHE 446 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhh
Confidence 99999999999999999999988 99999999999 99999999997643
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=1.2e-106 Score=838.36 Aligned_cols=402 Identities=35% Similarity=0.611 Sum_probs=366.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhH-HHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCc
Q 041074 8 DWLNKGDNAWQMISATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGP 86 (452)
Q Consensus 8 ~~~~~~d~~w~l~~~~lV~~~m~-~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~ 86 (452)
+.+|+.|++|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|+|+.++
T Consensus 25 ~~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~ 102 (428)
T PRK10666 25 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNW 102 (428)
T ss_pred cccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHH
Confidence 458999999999999999 8998 9999999999999999999999999999999999999999999975 678887653
Q ss_pred cchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhc
Q 041074 87 ALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYT 166 (452)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp 166 (452)
++ ++....+ ...+++|...+++||++||+++++|++|+++||+|+++|++|+++|++++||
T Consensus 103 ~~-----~~~~~~~--------------~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~ 163 (428)
T PRK10666 103 LM-----LKNIELT--------------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYI 163 (428)
T ss_pred hh-----hcCCCcc--------------cccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHH
Confidence 21 1111100 0123478888999999999999999999999999999999999999999999
Q ss_pred cccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q 041074 167 VGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPY 246 (452)
Q Consensus 167 ~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~ 246 (452)
|++||+|++|||.++|++|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||+|||+||++
T Consensus 164 ~vahWvW~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~ 243 (428)
T PRK10666 164 PIAHMVWGGGLLASDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 243 (428)
T ss_pred HhhhheeCchhHhhcchhhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHH
Q 041074 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMF 326 (452)
Q Consensus 247 ~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~ 326 (452)
..+.++.++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|+++|+++|++|+++.++
T Consensus 244 ~~~~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~ 323 (428)
T PRK10666 244 AANEIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTM 323 (428)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHH
Q 041074 327 IHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVV 406 (452)
Q Consensus 327 l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~ 406 (452)
++| |+|||||+|++++||+||+||.+++|+|++++.... |...|...++|++.|++|++++++|+++.
T Consensus 324 l~~----~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~--------~~~~g~~~~~ql~~Ql~g~~~~~~~~~~~ 391 (428)
T PRK10666 324 LKR----WLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGV--------GYAEGVTMGHQVLVQLESIAITIVWSGVV 391 (428)
T ss_pred HHh----cCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCc--------cccCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 654 479999999999999999999999999998754211 11112123589999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHhcC-ChhhcCcccccc
Q 041074 407 TSIICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYAL 442 (452)
Q Consensus 407 ~~i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~ 442 (452)
++++++++|++.+||++||||+.| |.+||||++||+
T Consensus 392 t~ii~~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 392 AFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HHHHHHHHHhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 999999999999999999999999 999999999963
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=3.3e-103 Score=810.03 Aligned_cols=397 Identities=40% Similarity=0.716 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecC--CCCCcccCCCccchhhh
Q 041074 15 NAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGD--KLLPFWGKAGPALGQKF 92 (452)
Q Consensus 15 ~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~--~~~~fiG~~~~~~~~~~ 92 (452)
++|+++|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|+.++++
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~---- 75 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGL---- 75 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhh----
Confidence 57999999999 8999999999999999999999999999999999999999999999998 4578999864321
Q ss_pred hhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccccee
Q 041074 93 LIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSL 172 (452)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ahwv 172 (452)
+.. +.++ .....+.+|+..+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+
T Consensus 76 --~~~--~~~~---------~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwv 142 (403)
T TIGR00836 76 --KNF--LYPG---------KISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWV 142 (403)
T ss_pred --ccC--Cccc---------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccee
Confidence 111 1000 000123478899999999999999999999999999999999999999999999999999
Q ss_pred e-ccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCC--CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcC
Q 041074 173 W-GGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKD--RERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN 249 (452)
Q Consensus 173 W-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~--~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~ 249 (452)
| ++|||+++|++|||||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..+
T Consensus 143 W~~~GwL~~lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~ 222 (403)
T TIGR00836 143 WGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAAN 222 (403)
T ss_pred ecCCchhhccCcchhcCceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccc
Confidence 9 59999999999999999999999999999999999999997 67899999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHH
Q 041074 250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHK 329 (452)
Q Consensus 250 ~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~ 329 (452)
.++.++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|+++|+++|++|+++.+++++
T Consensus 223 ~~~~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~ 302 (403)
T TIGR00836 223 GTAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKK 302 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred hhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 041074 330 RWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSI 409 (452)
Q Consensus 330 ~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~i 409 (452)
| +|||||+|++++||+||+||++++|+|++++.... ..|.++++ +++|++.|++|++++++|+++.+++
T Consensus 303 ~----~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~------~~g~~~~~-~~~~l~~Ql~g~~~~~~~s~~~~~i 371 (403)
T TIGR00836 303 K----LKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGV------GTGGLLGG-NGKQLGVQLIGIAAIIAWAFVVTFI 371 (403)
T ss_pred H----cCCCCCcccchhhhhhHHHHHHHHHHhcccccccc------cCCccccC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 79999999999999999999999999998754321 12444443 6799999999999999999999999
Q ss_pred HHHHHHHhcCCCCChHHHhcC-ChhhcCcccc
Q 041074 410 ICVIINKVIPLRMTEEQLLIG-DDAVHGEEAY 440 (452)
Q Consensus 410 ~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay 440 (452)
+++++|++.+||+++|||+.| |..||||++|
T Consensus 372 i~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 372 ILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred HHHHHHhcccccCCHHHHHhCCChhhhCcccC
Confidence 999999999999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=2.2e-102 Score=802.74 Aligned_cols=389 Identities=27% Similarity=0.430 Sum_probs=348.1
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCC---CCcccCCCccc
Q 041074 12 KGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKL---LPFWGKAGPAL 88 (452)
Q Consensus 12 ~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~---~~fiG~~~~~~ 88 (452)
..|++|+++|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++. ++++|..
T Consensus 2 ~~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~f---- 76 (404)
T TIGR03644 2 ALDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGSF---- 76 (404)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchhh----
Confidence 36999999999999 899999999999999999999999999999999999999999999999762 3333321
Q ss_pred hhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccc
Q 041074 89 GQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVG 168 (452)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ 168 (452)
.....+...+ .+. ....+..+|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||+
T Consensus 77 ----~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ 145 (404)
T TIGR03644 77 ----LLGADNPVGD----LIA---GFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIE 145 (404)
T ss_pred ----hhcccccccc----ccc---ccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhh
Confidence 1111000000 000 00112246778899999999999999999999999999999999999999999999
Q ss_pred cceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCC-C----CCCCCCcHHHHHHHHHHHHHhhhhhccC
Q 041074 169 AFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKD-R----ERFPPNNVIMMLAGAGLLWMGWAGFNGG 243 (452)
Q Consensus 169 ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~-~----~~~~~~n~~~~~lG~~lLw~gW~gFN~g 243 (452)
+||+|++|||+++|++|||||++||++||++||++++++|||++|+ + +++||||++++++|+++||+||+|||+|
T Consensus 146 ahW~W~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~g 225 (404)
T TIGR03644 146 GSWTWGGGWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGG 225 (404)
T ss_pred hhheeCchHHhhcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcch
Confidence 9999988999999999999999999999999999999999999875 2 2578999999999999999999999999
Q ss_pred CCCCcCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhch
Q 041074 244 DPYTANI-----DSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGS 318 (452)
Q Consensus 244 s~~~~~~-----~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~ 318 (452)
|++..+. +..++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|+++|+++|+
T Consensus 226 s~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~ 305 (404)
T TIGR03644 226 SQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGV 305 (404)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHH
Confidence 9877653 35789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHH
Q 041074 319 VPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAF 398 (452)
Q Consensus 319 i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~ 398 (452)
+|+++.++++ |+|||||+|++++||+||+||++++|+|+. .+|++.|++|+++
T Consensus 306 v~~~~~~~~~-----~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~----------------------~~~l~~Ql~g~~~ 358 (404)
T TIGR03644 306 IVVFSIVLLD-----KLKIDDPVGAISVHGVAGIWGTLVVPITNG----------------------DASFGAQLIGAAT 358 (404)
T ss_pred HHHHHHHHHH-----hCCCCCCcCchHhhhHHHHHHHHHHHHhcc----------------------chHHHHHHHHHHH
Confidence 9999988654 369999999999999999999999999963 1589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHhcC-ChhhcCccccccc
Q 041074 399 IIGWNVVVTSIICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALW 443 (452)
Q Consensus 399 ~~~~s~~~~~i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~ 443 (452)
+++|+++.++++++++|++.++|++||+|++| |.+||||++||++
T Consensus 359 ~~~~~~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e~ 404 (404)
T TIGR03644 359 IFAWVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPEF 404 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCCC
Confidence 99999999999999999999999999999999 9999999999863
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=1.9e-94 Score=748.63 Aligned_cols=390 Identities=36% Similarity=0.644 Sum_probs=340.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCC--CCCcccCCCccchhhhh
Q 041074 16 AWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDK--LLPFWGKAGPALGQKFL 93 (452)
Q Consensus 16 ~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~--~~~fiG~~~~~~~~~~~ 93 (452)
+|+++|+.+| ++|||||+++|+|.+|+||++|+++|++++++++++.||++||+++||++ .++++|+......
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~---- 75 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAF---- 75 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHH----
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccc----
Confidence 6999999999 89999999999999999999999999999999999999999999999987 4667766321100
Q ss_pred hhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccccceee
Q 041074 94 IKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLW 173 (452)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW 173 (452)
. . ....+|+..+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+|
T Consensus 76 --~--~----------------~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w 135 (399)
T PF00909_consen 76 --G--F----------------QWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVW 135 (399)
T ss_dssp --H--H----------------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHH
T ss_pred --c--c----------------hhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEE
Confidence 0 0 0112566778999999999999999999999999999999999999999999999999
Q ss_pred -ccchhhccccc-ccCCCeehhhhHHHHHHHHHHHHcccCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q 041074 174 -GGGFLFHWGVM-DYSGGYVIHLSSGIAGFTAAYWVGPRSTKD---RERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTA 248 (452)
Q Consensus 174 -~~GwL~~lG~~-DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~---~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~ 248 (452)
++|||.++|++ ||+||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..
T Consensus 136 ~~~Gwl~~~g~~~DfaG~~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~ 215 (399)
T PF00909_consen 136 GENGWLAQLGFLIDFAGSGVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAA 215 (399)
T ss_dssp CHCHHHHHCCHH--TT-TTTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSS
T ss_pred ecchhhccCccCCCCccceeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhccccccccccc
Confidence 69999999999 999999999999999999999999999986 6789999999999999999999999999999998
Q ss_pred CcchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHH
Q 041074 249 NIDSSM-AVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFI 327 (452)
Q Consensus 249 ~~~~~~-a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l 327 (452)
++++.. +++||++|+++|++++++++++++||+|+.+++||+|||+|+|||+|++++||+|+++|+++|.+|+++++++
T Consensus 216 ~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l 295 (399)
T PF00909_consen 216 NGRAWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWL 295 (399)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecc
Confidence 888776 9999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred HHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 041074 328 HKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVT 407 (452)
Q Consensus 328 ~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~ 407 (452)
++| +|||||+|++++||+||+||++++|+|+.++.... +...+.+++ +.+|++.|+++++++++|+++.+
T Consensus 296 ~~~----~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~----~~~~~~~~~--~~~~l~~Ql~g~~~~~~~~~~~s 365 (399)
T PF00909_consen 296 LKR----LKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYS----DGYGGLFYG--NGRQLGIQLLGIVVILAWSFVVS 365 (399)
T ss_dssp HHH----HTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-----SSTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cce----eEeccccceEeeeeccHHHHHHHHHHHhccccccc----cccccccCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 554 69999999999999999999999999999875411 123456665 45999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHhcC-ChhhcCcccc
Q 041074 408 SIICVIINKVIPLRMTEEQLLIG-DDAVHGEEAY 440 (452)
Q Consensus 408 ~i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay 440 (452)
+++++++|++.+||++||+|++| |..||||+||
T Consensus 366 ~i~~~~l~~~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 366 YIIFKILKKFGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HHHHHHHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred HHHHHHHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence 99999999999999999999999 9999999999
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2.2e-45 Score=362.49 Aligned_cols=297 Identities=19% Similarity=0.272 Sum_probs=248.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccccceeeccchhhcccccccCCCeehhhhHHHHHHH
Q 041074 123 ASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFT 202 (452)
Q Consensus 123 ~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~ 202 (452)
-.+.+..+.||+.++.|..||+.+|+++.|+++++++..+ ++-.+.|-+ ++.+++.|.+|++.||.+|+++||+
T Consensus 116 ~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~-~~~~~e~v~-----~n~~~v~d~g~smtih~FgAYFGLa 189 (442)
T KOG3796|consen 116 GLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVT-AFGINEMVI-----SNIFNVNDHGGSMTIHAFGAYFGLA 189 (442)
T ss_pred EeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHH-HHHHHHHHH-----HHhccccccCCceEEEehhhhhhhh
Confidence 3567889999999999999999999999999999987544 444444443 4568999999999999999999999
Q ss_pred HHHHHcccCCC---CCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 041074 203 AAYWVGPRSTK---DRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIF-- 277 (452)
Q Consensus 203 ~a~~lG~R~~~---~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-- 277 (452)
+++++.||..+ +|+....|++.++++||++||+.||+||+..+.. ++.+.||++||++|.|++.+|++.++.+.
T Consensus 190 vA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~rAi~NTy~slAa~tvTtf~~Sslv~~ 268 (442)
T KOG3796|consen 190 VAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARHRAIFNTYLSLAASTVTTFAVSSLVHP 268 (442)
T ss_pred HhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 99999887654 3456778999999999999999999999975443 46679999999999999999999999976
Q ss_pred hcCCCHHhhhhhhhcccccccCCCC-CcchHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccCccccccchhhhhhh
Q 041074 278 FKKPSVIGAVQGMITGLVCITPGAG-LVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGV 356 (452)
Q Consensus 278 ~~k~~~~~~~nG~LaGlVaIta~a~-~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i 356 (452)
+||.||++++|.+|||.|||..+|+ ..+||.|+++|+|||+++..+++++.+++++++||+|+|++++.||++|++|.+
T Consensus 269 ~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~~ 348 (442)
T KOG3796|consen 269 QGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGGI 348 (442)
T ss_pred cCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHHH
Confidence 6799999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcc----cccccCcccCC-CCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHh
Q 041074 357 LTGLFAEPK----LCSLFLPVTNS-RGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLL 428 (452)
Q Consensus 357 ~~g~fa~~~----~~~~~~~~~~~-~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~i~~~il~~~~~lRv~~e~E~ 428 (452)
+...++.-. +....+.+.+. .|.-.+ +...|...|+.|+.+++..+.+.+++...+||... .|-++|+|.
T Consensus 349 ~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~-~~~sQa~~Ql~gl~~~l~~A~~gGlLtGllLkl~~-w~qp~d~~~ 423 (442)
T KOG3796|consen 349 ASIVFAVLATPESYGKGLYHIFPMIGGNGHG-MATSQALYQLFGLLVTLVIALVGGLLTGLLLKLKI-WDQPSDDEY 423 (442)
T ss_pred HHHHHHhhcchhhcccccccccceecCCCcc-chhHHHHHHHHHHHHHHHHHHHhhhhhhheeeccc-cCCCChhhh
Confidence 998876432 11111101010 011111 35689999999999999999999999999998743 444444443
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=79.37 E-value=20 Score=37.71 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=90.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHH---HHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccC
Q 041074 7 PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVN---SAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGK 83 (452)
Q Consensus 7 ~~~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~---~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~ 83 (452)
++..++-|..+.++.+.+. + .|..-|++|.....|... +++..+++.+.+.+.|.++.|-.. | +
T Consensus 182 ~~~~~~~s~~~~~lG~~lL-w---~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-g--------k 248 (399)
T PF00909_consen 182 PNPIPPHSPPLAMLGTLLL-W---FGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-G--------K 248 (399)
T ss_dssp TSS--HCHHHHHHHHHHHH-H---HHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-S--------S
T ss_pred ccCCCCCcHHHhhhhHHHH-H---HHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-c--------c
Confidence 4455566777888877555 3 367777877776666555 456678888888888876644221 1 1
Q ss_pred CCccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 041074 84 AGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTF 163 (452)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~ 163 (452)
.+ ...+.+.+.|- .+...+-+.-+++.+-++..++ ++.
T Consensus 249 ~~--------------------------------------~~~~~nG~laG---lVaita~~~~v~p~~A~~iG~i-ag~ 286 (399)
T PF00909_consen 249 WS--------------------------------------MVGICNGALAG---LVAITAGAGYVTPWGALLIGAI-AGL 286 (399)
T ss_dssp ----------------------------------------HHHHHHHHHHH---HHHHTTTTTTS-HHHHHHHHHH-HHH
T ss_pred cc--------------------------------------hhhhhhhhhhh---hhheecccCCCcHHHHHHhhhh-Hhh
Confidence 00 11223333333 3333455577888888888876 555
Q ss_pred hhccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHccc
Q 041074 164 SYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 210 (452)
Q Consensus 164 vYp~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 210 (452)
++....+| +++++++.|..+...||..+|+.|...+-++-.+
T Consensus 287 i~~~~~~~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 287 ISYFGVSW-----LLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HHHHHHHH-----HHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred hhhhheec-----ccceeEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 55444443 2578999999999999999999999988766544
No 9
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=75.89 E-value=10 Score=38.16 Aligned_cols=92 Identities=16% Similarity=0.049 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHhhhhhhhcccccccCCCC--------CcchHHHHHHHHhhchhhHH
Q 041074 256 VLNTNICAATSLLVWTWLDVIFFK-----KPSVIGAVQGMITGLVCITPGAG--------LVQGWAAIVMGILSGSVPWF 322 (452)
Q Consensus 256 ~~NT~la~a~g~l~~~~~~~~~~~-----k~~~~~~~nG~LaGlVaIta~a~--------~v~p~~A~iiG~iag~i~~~ 322 (452)
++=.++..-++=..+++..+..-| |.|+.-..+|.++|+++.+-.+. .++++..+++|++.++.+.+
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVL 233 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 333444444555566666665533 35777888888888766543222 13567788999999988888
Q ss_pred HHHHHHHhhcccCccccccCcccccc
Q 041074 323 TMMFIHKRWTLLQKIDDTLSVFHTHA 348 (452)
Q Consensus 323 ~~~~l~~~l~~~l~IDD~~~v~~vHg 348 (452)
+- ..+..+|++.++.|--..+|=||
T Consensus 234 GD-L~ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 234 GD-LTESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred hH-HHHHHHhhccCCCCCcCcCCCcC
Confidence 85 46777888999999999999998
No 10
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=74.18 E-value=28 Score=33.03 Aligned_cols=87 Identities=23% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcchhHHHHHHHHHHHHHH
Q 041074 188 GGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSL 267 (452)
Q Consensus 188 G~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~ 267 (452)
++..+|..|.. ..++++|||. ........+-+...-|..|. -..-=+|+...+....
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~-------------a~~~~~~vll~qal~fg~gg-------~~~lG~N~l~m~~~~~ 117 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWL-------------AALAMAIVLLLQALLFGDGG-------WTALGANALNMGVPPV 117 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHH-------------HHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHH
Confidence 67999999875 4667899873 23333333333333333221 1122367775555555
Q ss_pred HHHHHHHHHHhcCCCHHhhhhhhhcccccc
Q 041074 268 LVWTWLDVIFFKKPSVIGAVQGMITGLVCI 297 (452)
Q Consensus 268 l~~~~~~~~~~~k~~~~~~~nG~LaGlVaI 297 (452)
+....+.+..+||.......++.++|.+++
T Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~F~ag~l~~ 147 (205)
T PF01891_consen 118 LVSYLLFRLLRRKFPRNIFVAGFLAGFLSV 147 (205)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 555555554445433334456666555443
No 11
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=72.78 E-value=78 Score=33.53 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=83.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccch--hHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCC
Q 041074 8 DWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKK--WAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAG 85 (452)
Q Consensus 8 ~~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~k--n~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~ 85 (452)
+.+..-+..+.++.+.+. + .|..-|++|..... .+..+++...++.+.+.+.|.++-|-. .++ .+
T Consensus 189 ~~~~~~n~~~~~lGt~lL-w---~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk--------~~ 255 (403)
T TIGR00836 189 VAIRPHNVPLVVLGTFIL-W---FGWFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGK--------PT 255 (403)
T ss_pred CCCCCCCHHHHHHHHHHH-H---HHHhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--------CC
Confidence 445556777888877655 4 36666777776433 455667778888888889988775421 221 10
Q ss_pred ccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 041074 86 PALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSY 165 (452)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vY 165 (452)
. ..+.+ .+.+-.....+-++-.++.+-++..++ +++++
T Consensus 256 ~--------------------------------------~~~~n---G~LAGLVaita~a~~v~p~~A~viG~i-ag~~~ 293 (403)
T TIGR00836 256 L--------------------------------------LGACN---GILAGLVAITPGCGVVTPWGAIIIGLV-AGVLC 293 (403)
T ss_pred H--------------------------------------HHHHh---hhhhhheeecCCCCCCCHHHHHHHHHH-HHHHH
Confidence 0 00001 111111122222344556666666654 33333
Q ss_pred ccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHccc
Q 041074 166 TVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 210 (452)
Q Consensus 166 p~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 210 (452)
....++ ..+++++.|.-+...||..+|+.|....-++.++
T Consensus 294 ~~~~~~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 294 YLAVSK-----LKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred HHHHHH-----HHHHcCCCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 332221 1357899999999999999999998888777543
No 12
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=68.48 E-value=6.1 Score=38.01 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred CCHHhhhhhhhcccccccCCCC-C--------cchHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccCcccccc
Q 041074 281 PSVIGAVQGMITGLVCITPGAG-L--------VQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHA 348 (452)
Q Consensus 281 ~~~~~~~nG~LaGlVaIta~a~-~--------v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 348 (452)
.++.-...|.++|.++....+- . .+++.+++++++++++..++- ..+..+|+..+|.|--+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gd-l~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGD-LFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccccCcC
Confidence 3555566677766665543322 1 678999999999999998885 45666777899999999999998
No 13
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=67.32 E-value=31 Score=28.93 Aligned_cols=59 Identities=20% Similarity=0.070 Sum_probs=40.4
Q ss_pred cCC-CHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCcccc
Q 041074 279 KKP-SVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDD 339 (452)
Q Consensus 279 ~k~-~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 339 (452)
.|| ....+.-|++.|+++.- -.+-.+++..+.-|.++|+..........|+ .+|.+=||
T Consensus 33 ~K~iPlIs~viGilLG~~~~~-~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r-~~~~~e~~ 92 (93)
T PF06946_consen 33 NKWIPLISVVIGILLGAAAYP-LTGDGNLALMAWAGGLAGLAATGLFEQFTNR-SKKYGEDD 92 (93)
T ss_pred cchhhHHHHHHHHHHHHHhhh-cCCCccHHHHHHHHHHhhhhhhhHHHHHHhh-hhhcCcCC
Confidence 354 56788889999988752 2223366777777999999888877777665 34445555
No 14
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=64.17 E-value=2e+02 Score=30.51 Aligned_cols=139 Identities=13% Similarity=0.003 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHHHHHhHHHHHHHhcCcc------cc-hhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcc
Q 041074 9 WLNKGDNAWQMISATLVGLQSVPGLVILYGSIV------KK-KWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFW 81 (452)
Q Consensus 9 ~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~v------r~-kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fi 81 (452)
.++.-|..+.++-+.+. ++ |-.-|++|.. ++ +.+..+++...+..+.+.+.|.++-|-. +++
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~---gW~gFN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk------ 267 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WM---GWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGK------ 267 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HH---HHHhhcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC------
Confidence 45566777888777665 44 4444555553 22 2345667777888888888887774422 221
Q ss_pred cCCCccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 041074 82 GKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWL 161 (452)
Q Consensus 82 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~ 161 (452)
.+ ...+.+...|-..+ | -+-+.-.++.+-++...+ +
T Consensus 268 --~~--------------------------------------~~~~~nG~LAGLVa-I--Ta~~~~v~p~~A~iiG~i-a 303 (404)
T TIGR03644 268 --AD--------------------------------------LTMVLNGALAGLVA-I--TAEPLTPSPLAATLIGAV-G 303 (404)
T ss_pred --CC--------------------------------------HHHHHHHHHhhhhh-h--ccccCCCCHHHHHHHHHH-H
Confidence 00 01112222222211 1 223356667777777765 5
Q ss_pred HhhhccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHc
Q 041074 162 TFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVG 208 (452)
Q Consensus 162 ~~vYp~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 208 (452)
.+++..... +++++++.|.-+...||..+|..|...+=+..
T Consensus 304 g~v~~~~~~------~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 304 GVIVVFSIV------LLDKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HHHHHHHHH------HHHhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 555544333 36788999999999999999999988776653
No 15
>PLN02594 phosphatidate cytidylyltransferase
Probab=54.19 E-value=8.5 Score=39.72 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccCcccccc
Q 041074 306 GWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHA 348 (452)
Q Consensus 306 p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg 348 (452)
.+.++++|++++++..+|-. .+..+|+.+||-|--+.+|-||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdl-faS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGF-FASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHccCCCcccCccCCCc
Confidence 57899999999999999864 4556678899999999999998
No 16
>PRK10666 ammonium transporter; Provisional
Probab=47.45 E-value=3.3e+02 Score=29.19 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=39.5
Q ss_pred hcccchhHHHHHHHHHHHhhhccccceeeccchhh-cccccccCCCeehhhhHHHHHHHHHHHHcc
Q 041074 145 LGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLF-HWGVMDYSGGYVIHLSSGIAGFTAAYWVGP 209 (452)
Q Consensus 145 aeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~GwL~-~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~ 209 (452)
++=+++..-++..++ +++++....++ |+ ++++.|.-+...||..+|+.|....-+...
T Consensus 298 a~~v~p~~A~iiG~v-ag~v~~~~~~~------l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 298 CGYVGVGGALIIGVV-AGLAGLWGVTM------LKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred cccCCHHHHHHHHHH-HHHHHHHHHHH------HHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhc
Confidence 345566666666654 44444332222 44 478999999999999999999887766653
No 17
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=44.93 E-value=20 Score=35.49 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcC-----CCHHhhhhhhhcccccccCCCC----C-----cchHHHHHHHHhhchhhHHHHHHHHHhhcc
Q 041074 268 LVWTWLDVIFFKK-----PSVIGAVQGMITGLVCITPGAG----L-----VQGWAAIVMGILSGSVPWFTMMFIHKRWTL 333 (452)
Q Consensus 268 l~~~~~~~~~~~k-----~~~~~~~nG~LaGlVaIta~a~----~-----v~p~~A~iiG~iag~i~~~~~~~l~~~l~~ 333 (452)
+.+++..+...|+ .|+.-...|.+.|.+..+-.+- . .+++..++++++.++++.++- ..+..+|+
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGD-L~eS~iKR 226 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGD-LFESYIKR 226 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 3345555554333 5777778888887666553332 1 235788899999999988875 45656778
Q ss_pred cCccccccCcccccc
Q 041074 334 LQKIDDTLSVFHTHA 348 (452)
Q Consensus 334 ~l~IDD~~~v~~vHg 348 (452)
++++-|--...|=||
T Consensus 227 ~~gvKDsg~liPGHG 241 (265)
T COG0575 227 LLGIKDSGWLIPGHG 241 (265)
T ss_pred ccCCCCcCCCCCCcC
Confidence 899999999999998
No 18
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=40.85 E-value=1.2e+02 Score=33.66 Aligned_cols=104 Identities=24% Similarity=0.411 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHhhh-hhccCCCCCcCcchhHHHHHHH-HHHHHHHHHHHHHHHH---HhcCCCHHhhhhhhhcccc
Q 041074 221 NNVIMMLAGAGLLWMGWA-GFNGGDPYTANIDSSMAVLNTN-ICAATSLLVWTWLDVI---FFKKPSVIGAVQGMITGLV 295 (452)
Q Consensus 221 ~n~~~~~lG~~lLw~gW~-gFN~gs~~~~~~~~~~a~~NT~-la~a~g~l~~~~~~~~---~~~k~~~~~~~nG~LaGlV 295 (452)
|=+|+++.|.+++-++.. +.+. .. +...-...+++. =..+.+.+...+--++ .-+|+ .+.-|.++|++
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~---~~-~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rp---glapg~i~g~~ 308 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEA---FK-EPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRP---GLTPGLIGGML 308 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccc---cC-CccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHH
Confidence 456788888888877643 2111 11 111112223322 1123333333322222 23555 67789999999
Q ss_pred cccCCCCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccC
Q 041074 296 CITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLS 342 (452)
Q Consensus 296 aIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~ 342 (452)
+...++||+ ++++.|+++|-+. |+++++.|+-+.++
T Consensus 309 a~~~~~GFl---G~Ilag~lagyv~--------~~l~K~~~lP~~l~ 344 (563)
T PRK10712 309 AVSTGSGFI---GGIIAGFLAGYVA--------KLISTKLKLPQSME 344 (563)
T ss_pred HhcCCchHH---HHHHHHHHHHHHH--------HHHHHhccCcHHHH
Confidence 887765553 5555565555443 33333346666555
No 19
>PRK08319 cobalt transport protein CbiM; Validated
Probab=39.26 E-value=3.6e+02 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=20.3
Q ss_pred hhhcccccccCCCeehhhhHHHHHHHHHHHHcccC
Q 041074 177 FLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRS 211 (452)
Q Consensus 177 wL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~ 211 (452)
|+-+.+ .-|+..+|..|+. ..++++|||.
T Consensus 56 ~~i~~p---i~~G~s~Hllg~~---l~~lllGp~~ 84 (224)
T PRK08319 56 SALKIP---SVTGSCSHPTGTG---LGAILFGPAV 84 (224)
T ss_pred HHhcCC---CCCCcchhHhHHH---HHHHHHhHHH
Confidence 344544 3468999999875 4567899984
No 20
>PLN02953 phosphatidate cytidylyltransferase
Probab=38.88 E-value=35 Score=35.96 Aligned_cols=88 Identities=15% Similarity=-0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CCHHhhhhhhhcccccccCCC--------CCcchHHHHHHHHhhchhhHHHHHHH
Q 041074 260 NICAATSLLVWTWLDVIFFKK----PSVIGAVQGMITGLVCITPGA--------GLVQGWAAIVMGILSGSVPWFTMMFI 327 (452)
Q Consensus 260 ~la~a~g~l~~~~~~~~~~~k----~~~~~~~nG~LaGlVaIta~a--------~~v~p~~A~iiG~iag~i~~~~~~~l 327 (452)
++..-++=+.+++..+...|+ .|+.-...|.++|+++....+ -...++.++++|++.++...++- +.
T Consensus 275 ~~~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GD-L~ 353 (403)
T PLN02953 275 FSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGD-LT 353 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhH-HH
Confidence 333444455566666655332 354444555544433321111 13456778999999999988885 45
Q ss_pred HHhhcccCccccccCcccccc
Q 041074 328 HKRWTLLQKIDDTLSVFHTHA 348 (452)
Q Consensus 328 ~~~l~~~l~IDD~~~v~~vHg 348 (452)
+..+|++++|.|--..++=||
T Consensus 354 eS~iKR~~gVKDsG~liPGHG 374 (403)
T PLN02953 354 ESMIKRDAGVKDSGSLIPGHG 374 (403)
T ss_pred HHHHhHccCCCCccccCCCCC
Confidence 667788899999888888888
No 21
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=38.14 E-value=19 Score=29.51 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-------------CHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchh
Q 041074 261 ICAATSLLVWTWLDVIFFKKP-------------SVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSV 319 (452)
Q Consensus 261 la~a~g~l~~~~~~~~~~~k~-------------~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i 319 (452)
+|...|+++.++-++..+||. -..++.-|++|++.++|...|.-+-+.-+.+.++||.-
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~g 75 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGIG 75 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhcC
Confidence 355677777777774444421 25688899999999999888888888888888877753
No 22
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.07 E-value=92 Score=29.54 Aligned_cols=111 Identities=16% Similarity=0.281 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHHHHhhhhhccCCCCC--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCHH-hhh----
Q 041074 221 NNVIMMLAGAGLLWMGWAGFNGGDPYT--ANIDSSMAVLNTNICAATSLLVWTWLDVIFF------KKPSVI-GAV---- 287 (452)
Q Consensus 221 ~n~~~~~lG~~lLw~gW~gFN~gs~~~--~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~------~k~~~~-~~~---- 287 (452)
.+.....+-..+++++.+++-.|...- .+......++++.+.+..+++....+.+... +|.+.. .+.
T Consensus 76 ~~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~ 155 (206)
T PF06570_consen 76 SNPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVL 155 (206)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 355666666666677666654443211 1111222556666656656555555544333 222211 111
Q ss_pred -hhhhccccccc---CC--CCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCcccc
Q 041074 288 -QGMITGLVCIT---PG--AGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDD 339 (452)
Q Consensus 288 -nG~LaGlVaIt---a~--a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 339 (452)
-...-+++.++ |. -..++||..+++|+++-.+. ++++|+ ++|.+
T Consensus 156 ~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~----~~lkkk----~~i~~ 205 (206)
T PF06570_consen 156 AMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR----FYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH----HHHHHH----hCCCC
Confidence 11111222222 22 22788999999987665553 445554 57654
No 23
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=37.77 E-value=66 Score=27.66 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=30.3
Q ss_pred HhhhhhhhcccccccCC--CC--CcchHHHHHHHHhhchhhH-HHHHHHHHhhcccCcccc
Q 041074 284 IGAVQGMITGLVCITPG--AG--LVQGWAAIVMGILSGSVPW-FTMMFIHKRWTLLQKIDD 339 (452)
Q Consensus 284 ~~~~nG~LaGlVaIta~--a~--~v~p~~A~iiG~iag~i~~-~~~~~l~~~l~~~l~IDD 339 (452)
..+.++.++|+++.+.. +. -++|..+.++|..=|.+-. ....++.|.+++|.+.||
T Consensus 47 ~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 47 RKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 46678888888775533 33 3445555544544444321 111334455566677766
No 24
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=36.55 E-value=50 Score=27.37 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhcC
Q 041074 387 IQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIG 430 (452)
Q Consensus 387 ~ql~~Ql~g~~~~~~~s~~~~~i~~~il~~~~~lRv~~e~E~~G 430 (452)
..+..+.+++.-++.++..++.++.+.++.+ |.++++|..|
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~---~~~~~~~~~~ 87 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLT---KGEEGEESRG 87 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CcccccCCCC
Confidence 4566789999999999999998888888774 4444444443
No 25
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=35.49 E-value=1.1e+02 Score=28.36 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHhhhhhhhccccc
Q 041074 219 PPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPS--VIGAVQGMITGLVC 296 (452)
Q Consensus 219 ~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~--~~~~~nG~LaGlVa 296 (452)
++++..+..++..+.-.+.--+.+|+ .....++...|.+..++.....+.+.+ ....+.+.++++++
T Consensus 99 ~~y~~~~~~l~~~l~~~~fa~lfgg~-----------~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 99 PRYPPWLVILAAGLASAAFALLFGGS-----------WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 46888888888877776665555543 333455556666666555554444433 34455566666655
Q ss_pred ccC
Q 041074 297 ITP 299 (452)
Q Consensus 297 Ita 299 (452)
...
T Consensus 168 ~~~ 170 (193)
T PF06738_consen 168 ALL 170 (193)
T ss_pred HHH
Confidence 543
No 26
>COG1263 PtsG Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]
Probab=33.82 E-value=5.6e+02 Score=27.05 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 041074 394 AGAAFIIGWNVVVTSIICVIINKVI 418 (452)
Q Consensus 394 ~g~~~~~~~s~~~~~i~~~il~~~~ 418 (452)
.-..+.+.++.+...+.-+++++..
T Consensus 352 ~~~~ig~~~a~i~~fvf~~li~~~~ 376 (393)
T COG1263 352 LVYVIGLVIAAVYYFVFTFLIGKFN 376 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444445555556643
No 27
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=32.16 E-value=1.7e+02 Score=26.45 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHhhhccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHH--HcccCC
Q 041074 161 LTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYW--VGPRST 212 (452)
Q Consensus 161 ~~~vYp~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~--lG~R~~ 212 (452)
.+++|-...+|.=+ + .|.+|....-++++.+.+++.++ ..+|++
T Consensus 18 ~~~vY~~~t~~~~~-------~-~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 18 VAVVYGFWTKWSGD-------G-GEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHhccCC-------C-CCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56677665555322 2 28999999999999888887753 455554
No 28
>PRK10457 hypothetical protein; Provisional
Probab=29.95 E-value=1.1e+02 Score=24.95 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=20.9
Q ss_pred hhhhhccccc--ccCCCCCcchHHHHHHHHhhchhhHH
Q 041074 287 VQGMITGLVC--ITPGAGLVQGWAAIVMGILSGSVPWF 322 (452)
Q Consensus 287 ~nG~LaGlVa--Ita~a~~v~p~~A~iiG~iag~i~~~ 322 (452)
.-|.++|.+| +.|+-+-...+..+++|++++.+-.+
T Consensus 8 iiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~ 45 (82)
T PRK10457 8 IFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGW 45 (82)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3455555555 44554445666777777777766543
No 29
>PRK04032 hypothetical protein; Provisional
Probab=28.59 E-value=24 Score=32.60 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHhhcccCcccc
Q 041074 306 GWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDD 339 (452)
Q Consensus 306 p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 339 (452)
.+.++++|++.++...++- +.+..+|++.++.|
T Consensus 67 ~~~~~~~g~li~v~~~~GD-L~eS~iKR~~gVKD 99 (159)
T PRK04032 67 LGVAIILAFLLSFGALLGD-MLGSFIKRRLGLER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHhhccCCCC
Confidence 3558999999999888885 45677788899999
No 30
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=28.55 E-value=4.7e+02 Score=25.12 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=59.5
Q ss_pred CCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcchhHHHHHHHHHHHHH
Q 041074 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATS 266 (452)
Q Consensus 187 aG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~a~~NT~la~a~g 266 (452)
-|+..+|..|.. ..++++|||.. ....+.-|-+=+.-|.-|. . ..-=.|+..-+..+
T Consensus 63 ~gG~s~Hllg~~---l~~lllGp~~a-------------~l~~~i~L~~qal~fg~GG------i-t~LG~N~l~m~~~~ 119 (214)
T TIGR00123 63 VTGSCSHPTGNG---LAVVLFGPAVT-------------AVLAAIVLLFQALLLAHGG------L-TTLGANGFSMGVIG 119 (214)
T ss_pred CCcchhhHhHHH---HHHHHHhHHHH-------------HHHHHHHHHHHHHHHhCCc------H-HHHHHHHHHHHHHH
Confidence 468999999875 45668998832 1111222222222222221 1 11124665555555
Q ss_pred HHHHHHHHHHHhcC---CCHHhhhhhhhcccccccCC-------CCC-cch--------HHH-----HHHHHhhchhhHH
Q 041074 267 LLVWTWLDVIFFKK---PSVIGAVQGMITGLVCITPG-------AGL-VQG--------WAA-----IVMGILSGSVPWF 322 (452)
Q Consensus 267 ~l~~~~~~~~~~~k---~~~~~~~nG~LaGlVaIta~-------a~~-v~p--------~~A-----~iiG~iag~i~~~ 322 (452)
.+++..+.+..+|+ -+....++|.++..++-... .+. ..+ ... +.+|++=|+++.+
T Consensus 120 ~~~~~~~~~~~~~~~l~~~v~~f~~gf~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~Eg~iT~~ 199 (214)
T TIGR00123 120 PFVGWIVYKLACRAGLRRDVAVFLAAMLGDLATYVVTSVQLALAFPIPHAGFTGSVVKFMGIFAYTQVPLAIAEGLLTVM 199 (214)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444443332 23555566666655421100 000 000 111 3578888888888
Q ss_pred HHHHHHHh
Q 041074 323 TMMFIHKR 330 (452)
Q Consensus 323 ~~~~l~~~ 330 (452)
..++++|.
T Consensus 200 ~~~~l~~~ 207 (214)
T TIGR00123 200 IYDYITKL 207 (214)
T ss_pred HHHHHHHh
Confidence 88888764
No 31
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=28.41 E-value=3.1e+02 Score=24.36 Aligned_cols=85 Identities=21% Similarity=0.147 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCc
Q 041074 306 GWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSG 385 (452)
Q Consensus 306 p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~ 385 (452)
|+.|-.+-...|.+.......+.+. .+.+.--++=..+-.+|+.|.+.+..
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~------------------------- 80 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLS------------------------- 80 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHH-------------------------
Confidence 7777777777777665555444432 13333345556677788888776642
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 041074 386 GIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPL 420 (452)
Q Consensus 386 ~~ql~~Ql~g~~~~~~~s~~~~~i~~~il~~~~~l 420 (452)
.....+-+|...+.......=.+.-.++|++..+
T Consensus 81 -~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~f 114 (138)
T PF04657_consen 81 -NIILVPRLGAALTTILIVAGQLIASLLIDHFGLF 114 (138)
T ss_pred -HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1235577788888888888888888889987433
No 32
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.35 E-value=37 Score=33.90 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=38.1
Q ss_pred hhh--hhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCcccc
Q 041074 287 VQG--MITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDD 339 (452)
Q Consensus 287 ~nG--~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD 339 (452)
.+| .+.|.|+.|.-+.=++||-|.+++++||.+.=...-++++| .||+|
T Consensus 37 vdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 37 VDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred ccCcccchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 455 46777777777777899999999999999876666666654 69987
No 33
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=27.01 E-value=6e+02 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=16.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHh
Q 041074 309 AIVMGILSGSVPWFTMMFIHKR 330 (452)
Q Consensus 309 A~iiG~iag~i~~~~~~~l~~~ 330 (452)
..++|++=|+++.+..++++|.
T Consensus 191 ~~i~~i~Eg~iT~~~~~~l~~~ 212 (230)
T PRK11909 191 LTVAGIVEAIVTGLVVYYLQKA 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3335888888888888888764
No 34
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.03 E-value=3.6e+02 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=12.0
Q ss_pred ccchhhhhhhhhhhcc
Q 041074 347 HAVAGLLGGVLTGLFA 362 (452)
Q Consensus 347 Hg~~Gi~G~i~~g~fa 362 (452)
+..+|++|.++..++.
T Consensus 140 ~~gGGIIG~lLs~lL~ 155 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQ 155 (1355)
T ss_pred ccccchHHHHHHHHHH
Confidence 4679999988876544
No 35
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=24.87 E-value=1.6e+02 Score=25.05 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHH------hcCCCHHhhhhhhhccc-ccccCC-CCCcchHHHHHHHHhhc
Q 041074 261 ICAATSLLVWTWLDVIF------FKKPSVIGAVQGMITGL-VCITPG-AGLVQGWAAIVMGILSG 317 (452)
Q Consensus 261 la~a~g~l~~~~~~~~~------~~k~~~~~~~nG~LaGl-VaIta~-a~~v~p~~A~iiG~iag 317 (452)
++.-.|....+..|+.+ .||.|...+.-+++.|+ +++... ....-+.++.++|+.-|
T Consensus 10 i~fiiGs~~GL~ySYkKy~~P~v~k~iD~~ALv~aiiG~~~~~vn~~~~~~~~~ig~~li~~~~G 74 (99)
T PF09877_consen 10 ILFIIGSFLGLEYSYKKYREPFVEKKIDKLALVLAIIGGLILAVNSPSSPILYTIGAFLIGFPLG 74 (99)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhcccHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhcc
Confidence 44455566667777755 46789999999999999 777755 23334455555555444
No 36
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.82 E-value=2e+02 Score=24.71 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=29.6
Q ss_pred HHHHHhhhhhccCCCCCcC-cchhHHHHHHHHHHHHHHHHHHHHH
Q 041074 231 GLLWMGWAGFNGGDPYTAN-IDSSMAVLNTNICAATSLLVWTWLD 274 (452)
Q Consensus 231 ~lLw~gW~gFN~gs~~~~~-~~~~~a~~NT~la~a~g~l~~~~~~ 274 (452)
.++...|...|........ +..+.+++|+.+|.-+.-.+.+++-
T Consensus 11 ~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 11 TVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILM 55 (108)
T ss_pred HHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567777775433212 3346899999999998888777653
No 37
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.76 E-value=1e+02 Score=28.57 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCCChHHHhc-C--ChhhcCcccccccCCCCCCC
Q 041074 407 TSIICVIINKVIPLRMTEEQLLI-G--DDAVHGEEAYALWGDGEKYD 450 (452)
Q Consensus 407 ~~i~~~il~~~~~lRv~~e~E~~-G--D~~~hg~~ay~~~~~~~~~~ 450 (452)
..+.++++| ..++|-....+++ | +..++..|--|+.+|+|+=|
T Consensus 107 l~i~yfvir-~~R~r~~~rktRkYgvl~~~~~~~Em~pL~~ddedeD 152 (163)
T PF06679_consen 107 LAILYFVIR-TFRLRRRNRKTRKYGVLTTRAENVEMAPLEEDDEDED 152 (163)
T ss_pred HHHHHHHHH-HHhhccccccceeecccCCCcccceecccCCCccccc
Confidence 334444444 3445543333443 3 33323333334444444433
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.15 E-value=90 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=13.6
Q ss_pred HHHHHHHhhchhhHH-HHHHHHHhhcccCcc
Q 041074 308 AAIVMGILSGSVPWF-TMMFIHKRWTLLQKI 337 (452)
Q Consensus 308 ~A~iiG~iag~i~~~-~~~~l~~~l~~~l~I 337 (452)
..+++|++||++-.. ...|+.+|+++|-+-
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 556677777776432 223344555555443
No 39
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=23.01 E-value=4.3e+02 Score=27.37 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=29.6
Q ss_pred HHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHH
Q 041074 273 LDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMF 326 (452)
Q Consensus 273 ~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~ 326 (452)
+.+-..+|+-. .-|.+.|+++....+++ .++++.|++++.+.....|+
T Consensus 82 Ia~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ 129 (346)
T TIGR01427 82 IAYSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKY 129 (346)
T ss_pred HHHHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHH
Confidence 33444567633 33999999998866665 37777777666554333333
No 40
>PRK06265 cobalt transport protein CbiM; Validated
Probab=22.34 E-value=6.6e+02 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccc
Q 041074 257 LNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCI 297 (452)
Q Consensus 257 ~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaI 297 (452)
.|++.-+.-+.+++....+..++.+ .....++.++|.+++
T Consensus 102 ~N~l~m~~p~~~~~~~~~~~~~~~~-~~~~~~~f~~~~l~v 141 (199)
T PRK06265 102 VNTLNMALPAVLAGYLFRKLLRRTP-PPRGLAAFLAGALAV 141 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHH
Confidence 4665555666777777666544433 133455565555544
No 41
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=21.78 E-value=8.2e+02 Score=28.93 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 041074 224 IMMLAGAGLLWMGWAGFN 241 (452)
Q Consensus 224 ~~~~lG~~lLw~gW~gFN 241 (452)
....++.++.|+....++
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (1140)
T PRK06814 228 WLAILGISWFWLVGAVVL 245 (1140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555544443
No 42
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.96 E-value=2e+02 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=25.1
Q ss_pred HhHHHHHHHhcCcccchh--HHHH-HHHHHHHHHHHHHHHhhheee
Q 041074 28 QSVPGLVILYGSIVKKKW--AVNS-AFMALYAFAAVVICWATWAYK 70 (452)
Q Consensus 28 ~m~~Gfalle~G~vr~kn--~~~~-l~~~~~~~~v~~i~~~~~Gy~ 70 (452)
++..|+...|.|.+-+.+ ...+ ++..++.+..++++|+.+|+-
T Consensus 18 lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 18 LIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445577777777555433 2222 224566666677888877764
No 43
>PRK11375 allantoin permease; Provisional
Probab=20.83 E-value=2.2e+02 Score=30.80 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHhcC
Q 041074 402 WNVVVTSIICVIINKVIPLRMTEEQLLIG 430 (452)
Q Consensus 402 ~s~~~~~i~~~il~~~~~lRv~~e~E~~G 430 (452)
-+++++.++..+++|..+-|-++|+|..|
T Consensus 456 ~g~iva~~~Y~~l~~~~~~~~~~~~~~~~ 484 (484)
T PRK11375 456 VGVIVAFVAYALLKKRTTAEKTGEQKTIG 484 (484)
T ss_pred HHHHHHHHHHHHHHhhCCCccccccccCC
Confidence 34566666777777766666677777655
No 44
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=20.45 E-value=1.7e+02 Score=28.81 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHH--------hcCCCHHhhhh---hhhcccccccCCCCCcchHHHHHHHHhhchhhHHH
Q 041074 260 NICAATSLLVWTWLDVIF--------FKKPSVIGAVQ---GMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFT 323 (452)
Q Consensus 260 ~la~a~g~l~~~~~~~~~--------~~k~~~~~~~n---G~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~ 323 (452)
+.+...+++.++.+++-. .-..||+...| +++||+|--.+.-++.+ .-++++|+++|+++-..
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s-i~sillGflsg~iYava 297 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS-IFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH-HHHHHHHHHHHHHHHHH
Confidence 344555555555555421 12356777765 68999999988777655 46789999999998654
No 45
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=20.03 E-value=6.3e+02 Score=25.97 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=16.2
Q ss_pred CCCeehhhhHHHHHHHHHHHHcccC
Q 041074 187 SGGYVIHLSSGIAGFTAAYWVGPRS 211 (452)
Q Consensus 187 aG~~vVH~~gG~~gL~~a~~lG~R~ 211 (452)
.++..+|..++. ..++++||+.
T Consensus 61 p~G~s~Hllg~~---L~alllGP~~ 82 (322)
T PRK07331 61 PGGTTGHAVGGT---LIAILLGPWA 82 (322)
T ss_pred CCCcchhHHHHH---HHHHHHhHHH
Confidence 346788998875 4567899884
Done!