Query 041074
Match_columns 452
No_of_seqs 140 out of 1348
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 6E-110 2E-114 855.4 35.0 397 10-448 1-398 (399)
2 1u7g_A Probable ammonium trans 100.0 7E-102 2E-106 793.1 33.8 382 8-422 3-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 5.6E-83 1.9E-87 655.8 28.9 348 20-443 20-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 2.2E-74 7.5E-79 602.1 26.7 372 16-443 64-451 (490)
5 3b9w_A Ammonium transporter fa 61.2 61 0.0021 32.9 11.5 143 10-208 172-315 (407)
6 2b2h_A AMT-1, ammonium transpo 50.7 1.6E+02 0.0054 29.8 12.5 139 8-208 180-320 (399)
7 1u7g_A Probable ammonium trans 36.5 3.2E+02 0.011 27.4 12.1 142 8-209 191-334 (385)
8 3hd6_A Ammonium transporter RH 19.2 1.5E+02 0.005 30.9 6.0 71 290-364 137-207 (490)
9 2l2t_A Receptor tyrosine-prote 15.1 1.7E+02 0.0058 20.2 3.6 17 304-320 6-22 (44)
10 3oak_C Transcription elongatio 9.3 44 0.0015 21.4 -0.9 18 433-450 3-24 (31)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=6.1e-110 Score=855.43 Aligned_cols=397 Identities=34% Similarity=0.608 Sum_probs=363.3
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccch
Q 041074 10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALG 89 (452)
Q Consensus 10 ~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~ 89 (452)
+|++|++|+|+|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++.++|||+.+.++
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~- 78 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYAL- 78 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGG-
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhh-
Confidence 4789999999999999 89999999999999999999999999999999999999999999999987678999854321
Q ss_pred hhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 041074 90 QKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGA 169 (452)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~a 169 (452)
++.. . .-| ..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++
T Consensus 79 ----~~~~--~------------------~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~a 133 (399)
T 2b2h_A 79 ----LSGV--K------------------GED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFA 133 (399)
T ss_dssp ----GTTC--C------------------THH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHH
T ss_pred ----ccCC--C------------------CCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhh
Confidence 1110 0 012 67999999999999999999999999999999999999999999999
Q ss_pred ceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcC
Q 041074 170 FSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN 249 (452)
Q Consensus 170 hwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~ 249 (452)
||+|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..+
T Consensus 134 hwvW~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~ 213 (399)
T 2b2h_A 134 HWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN 213 (399)
T ss_dssp HHHHSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSS
T ss_pred hheECchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhcccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHH
Q 041074 250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHK 329 (452)
Q Consensus 250 ~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~ 329 (452)
.+++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.+ +++
T Consensus 214 ~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~ 291 (399)
T 2b2h_A 214 DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRI 291 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8899999999999999999999999999 99999999999999999999999999999999999999999999883 333
Q ss_pred hhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 041074 330 RWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSI 409 (452)
Q Consensus 330 ~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~i 409 (452)
|+|||||||++++||+||+||++++|+|++++.. +.+|++|+ +.+|++.|++|++++++|+++.+++
T Consensus 292 ----kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-------g~~Gl~~g--~~~ql~~Ql~g~~~~~~~~~v~~~i 358 (399)
T 2b2h_A 292 ----KKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN-------GYAGLLFG--NPQLLVSQLIAVASTTAYAFLVTLI 358 (399)
T ss_dssp ----HTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH-------SCCCGGGT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HcCCCCCCCceeccchhhHHHHHHHHHHcccccc-------CCCccccC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999987542 12577785 5799999999999999999999999
Q ss_pred HHHHHHHhcCCCCChHHHhcC-ChhhcCcccccccCCCCC
Q 041074 410 ICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALWGDGEK 448 (452)
Q Consensus 410 ~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~~~~~~ 448 (452)
+++++|++.+||++||||++| |.+||||++||+.+.+.|
T Consensus 359 ~~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~~~ 398 (399)
T 2b2h_A 359 LAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHHHH 398 (399)
T ss_dssp HHHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC-------
T ss_pred HHHHHHhcccCCCCHHHHHhCCCHHHhCcccCCccccccC
Confidence 999999999999999999999 999999999998665443
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=7.2e-102 Score=793.11 Aligned_cols=382 Identities=33% Similarity=0.598 Sum_probs=350.0
Q ss_pred ccccchhHHHHHHHHHHHHHHhH-HHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCc
Q 041074 8 DWLNKGDNAWQMISATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGP 86 (452)
Q Consensus 8 ~~~~~~d~~w~l~~~~lV~~~m~-~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~ 86 (452)
+.+|+.|++|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|||+.++
T Consensus 3 ~~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~ 80 (385)
T 1u7g_A 3 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINW 80 (385)
T ss_dssp CCCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTT
T ss_pred cccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcch
Confidence 357899999999999999 8999 9999999999999999999999999999999999999999999987 789998653
Q ss_pred cchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhc
Q 041074 87 ALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYT 166 (452)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp 166 (452)
++ ++.. +.+ ..++++|+..+++||++||++|++|++||++||+|+.+|++|+++|++++||
T Consensus 81 ~~-----l~~~--~~~------------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~ 141 (385)
T 1u7g_A 81 LM-----LKNI--ELT------------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYI 141 (385)
T ss_dssp GG-----GTTC--CTT------------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHH
T ss_pred hh-----ccCC--CCc------------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 21 1111 000 0123588999999999999999999999999999999999999999999999
Q ss_pred cccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q 041074 167 VGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPY 246 (452)
Q Consensus 167 ~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~ 246 (452)
|++||+|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++
T Consensus 142 ~~ahwvW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l 221 (385)
T 1u7g_A 142 PIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221 (385)
T ss_dssp HHHHHHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred hhhheeEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhh
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHH
Q 041074 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMF 326 (452)
Q Consensus 247 ~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~ 326 (452)
..+++++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.++
T Consensus 222 ~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~ 301 (385)
T 1u7g_A 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTM 301 (385)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHH
Q 041074 327 IHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVV 406 (452)
Q Consensus 327 l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~ 406 (452)
+++| +|||||||++++||+||+||++++|+|++++..+. +..+|..+ +.|++.|++|++++++|+++.
T Consensus 302 l~~~----l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~----~~~~G~~~----g~ql~~Ql~g~~~~~~~~~v~ 369 (385)
T 1u7g_A 302 LKRL----LRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV----GFAEGVTM----GHQLLVQLESIAITIVWSGVV 369 (385)
T ss_dssp HHHH----HCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCC----CCCTTCCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh----CCCCCCCCCEeecccccHHHHHHHHHhccccccCc----cccCCcch----hHHHHHHHHHHHHHHHHHHHH
Confidence 7654 69999999999999999999999999998764221 11234444 359999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 041074 407 TSIICVIINKVIPLRM 422 (452)
Q Consensus 407 ~~i~~~il~~~~~lRv 422 (452)
++++++++|++.+|||
T Consensus 370 ~~i~~~il~~~~glRv 385 (385)
T 1u7g_A 370 AFIGYKLADLTVGLRV 385 (385)
T ss_dssp HHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHccCCcC
Confidence 9999999999999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=5.6e-83 Score=655.83 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=306.7
Q ss_pred HHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccchhhhhhhcCCC
Q 041074 20 ISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSAL 99 (452)
Q Consensus 20 ~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~~~~ 99 (452)
.-...| |+.+||.|+++++ |||..+.+.+|++.. ...++|++++|. ++|+.
T Consensus 20 f~dv~v--Mi~iGfGFL~~~L--rk~~~s~v~~n~l~~-a~~~QW~~l~~~-------~Gf~~----------------- 70 (407)
T 3b9w_A 20 SINILA--MLLVGFGFLMVFV--RRYGFSATTGTYLVV-ATGLPLYILLRA-------NGIFG----------------- 70 (407)
T ss_dssp HHHHHH--HHHHHHHHHGGGS--TTCHHHHHHHHHHHH-HHHHHHHHHHHH-------TTTTS-----------------
T ss_pred hhhHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHhc-------ccccC-----------------
Confidence 344444 5678999999998 999999999999985 477899999981 12211
Q ss_pred CCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccccceeeccchhh
Q 041074 100 PETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLF 179 (452)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~GwL~ 179 (452)
++.+|..++++||++||++|++|++||++||+|+.+|++|+ +|.+++|||.+||+|++||+.
T Consensus 71 -----------------~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~gG~~~ 132 (407)
T 3b9w_A 71 -----------------HALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLDNASGL 132 (407)
T ss_dssp -----------------SCCCSSSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTTCTTSS
T ss_pred -----------------CCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeCCcchh
Confidence 12367788999999999999999999999999999999998 567899999999999989987
Q ss_pred cccccccCCCeehhhhHHHHHHHHHHHHcccCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcchhHHHHH
Q 041074 180 HWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKD-RERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLN 258 (452)
Q Consensus 180 ~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~-~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~a~~N 258 (452)
..|++|||||++||++||++||+++++||||++|+ +++++|||++++++|+++||+||||||+| +..++++.++++|
T Consensus 133 ~~G~~DfAGs~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~N 210 (407)
T 3b9w_A 133 TEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVN 210 (407)
T ss_dssp CTTCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHH
T ss_pred hcceeeccCceEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHH
Confidence 77999999999999999999999999999997652 22489999999999999999999999999 4567889999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCcc
Q 041074 259 TNICAATSLLVWTWLDVI-FFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKI 337 (452)
Q Consensus 259 T~la~a~g~l~~~~~~~~-~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~I 337 (452)
|++|+++|+++|++++++ ++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++++++++++++|+||
T Consensus 211 T~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~i 290 (407)
T 3b9w_A 211 TLLALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKT 290 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998 7899999999999999999999999999999999999999999999999998888888999
Q ss_pred ccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041074 338 DDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKV 417 (452)
Q Consensus 338 DD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~i~~~il~~~ 417 (452)
|||||++++||+||+||++++++|+.+. + ..|++|++++++|+++.++++++++|+
T Consensus 291 DD~l~a~~vHgv~Gi~G~l~~glfa~~~-------------------~----~~Ql~g~~~~~~~s~v~~~i~~~il~~- 346 (407)
T 3b9w_A 291 IDTCGVHNLHGLPGLLGGFSAILIVPGI-------------------A----VAQLTGIGITLALALIGGVIAGALIKL- 346 (407)
T ss_dssp CCTTCHHHHTTHHHHHHHHHHHHHSTTC-------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCeecchHHHHHHHHHHHHHccCC-------------------c----HHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999998641 1 159999999999999999999999998
Q ss_pred cCCCCChHHHhcC---------ChhhcCccccccc
Q 041074 418 IPLRMTEEQLLIG---------DDAVHGEEAYALW 443 (452)
Q Consensus 418 ~~lRv~~e~E~~G---------D~~~hg~~ay~~~ 443 (452)
|++||+|.+| |..||||++||++
T Consensus 347 ---r~~~e~e~~g~~~we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 347 ---TGTTKQAYEDSHEFIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp ---TCCCSSTTCGGGTSSSCCCGGGC---------
T ss_pred ---CCCHHHHcCCcccccCccccHHHhchhhccch
Confidence 9999999998 9999999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-74 Score=602.08 Aligned_cols=372 Identities=17% Similarity=0.220 Sum_probs=306.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccchhhhhhh
Q 041074 16 AWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIK 95 (452)
Q Consensus 16 ~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~ 95 (452)
.+-..--.-| |+..||.||-+=+-|.. .+.+--|++..+++ ++|-++= ++|..
T Consensus 64 ~Yp~fqDv~v--Mi~~GfGFLmtflkryg--~ssv~~n~l~~a~~-~Qwa~l~---------~g~~~------------- 116 (490)
T 3hd6_A 64 RYPSFQDVHV--MVFVGFGFLMTFLQRYG--FSAVGFNFLLAAFG-IQWALLM---------QGWFH------------- 116 (490)
T ss_dssp HHHHHHHHHH--HHHTHHHHHGGGSTTCH--HHHHHHHHHHHHHH-HHHHHHH---------HHHTT-------------
T ss_pred cCccchhHHH--HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH-HHHHHHH---------HHHhc-------------
Confidence 3445555555 34558888876554443 35556666666654 6775441 11110
Q ss_pred cCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccccceeecc
Q 041074 96 QSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGG 175 (452)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~ahwvW~~ 175 (452)
. ..++.+|..++++||++||++|++|++||++||+|+.+|++|+++| +++||+ .||+
T Consensus 117 ~------------------~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~--- 173 (490)
T 3hd6_A 117 F------------------LQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI--- 173 (490)
T ss_dssp C------------------BTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH---
T ss_pred c------------------ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH---
Confidence 0 0123588889999999999999999999999999999999999875 779998 4665
Q ss_pred chhhcccccccCCCeehhhhHHHHHHHHHHHHcccC---CCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcCcch
Q 041074 176 GFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRS---TKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDS 252 (452)
Q Consensus 176 GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~---~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~ 252 (452)
||.++|++|||||++||++||++||++++++|||. ++++++++|||++++++|+++||+||||||+|++.. +..+
T Consensus 174 -~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~~ 251 (490)
T 3hd6_A 174 -LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDSQ 251 (490)
T ss_dssp -HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHHH
T ss_pred -HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chHH
Confidence 68899999999999999999999999999999983 445667889999999999999999999999998653 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHhhhhhhhcccccccCCCC-CcchHHHHHHHHhhchhhHHHHHHHHH
Q 041074 253 SMAVLNTNICAATSLLVWTWLDVI--FFKKPSVIGAVQGMITGLVCITPGAG-LVQGWAAIVMGILSGSVPWFTMMFIHK 329 (452)
Q Consensus 253 ~~a~~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGlVaIta~a~-~v~p~~A~iiG~iag~i~~~~~~~l~~ 329 (452)
.++++||++|+++|+++|++++++ ++||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+++++++.+
T Consensus 252 ~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~ 331 (490)
T 3hd6_A 252 HRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTP 331 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 899999999999999999999986 57899999999999999999999999 699999999999999999999998877
Q ss_pred hhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccc--------cC-CchhHHHHHHHHHHHHH
Q 041074 330 RWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVY--------GG-SGGIQILKQLAGAAFII 400 (452)
Q Consensus 330 ~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~--------g~-~~~~ql~~Ql~g~~~~~ 400 (452)
++++|+|||||||++++||+||+||++++|+|+....... + +.+|+.+ |+ .+.+|++.|++|+++++
T Consensus 332 ~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~-~---g~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~ 407 (490)
T 3hd6_A 332 FLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEV-Y---GKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTL 407 (490)
T ss_dssp HHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccccc-c---ccCcceeccccccccCCcchHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999987532110 0 1235543 21 24689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHhcC-ChhhcCccccccc
Q 041074 401 GWNVVVTSIICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALW 443 (452)
Q Consensus 401 ~~s~~~~~i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~ 443 (452)
+|+++.++++++++|+...+|++||+|.+| |..|+.++.|+++
T Consensus 408 ~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~ 451 (490)
T 3hd6_A 408 AMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVY 451 (490)
T ss_dssp HHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC---
T ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCccccccc
Confidence 999999999999999999999999999999 9999999998765
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=61.19 E-value=61 Score=32.92 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=84.6
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccch
Q 041074 10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALG 89 (452)
Q Consensus 10 ~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~ 89 (452)
+..-|..+.++-+.+. ++ |-.-|++|+.....+.++++...++.+.+.+.|.++-+-+-.|+ .+
T Consensus 172 ~~~hn~~~~~lGt~lL-W~---GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK--------~~---- 235 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WL---FWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGK--------AS---- 235 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HH---HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--------CC----
T ss_pred CCCCCHHHHHHHHHHH-HH---HHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--------CC----
Confidence 5566667777777655 44 55557888655556677777888888888999877644321111 10
Q ss_pred hhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 041074 90 QKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGA 169 (452)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~a 169 (452)
. ..+.+ .+.+-.....+-++-+++..-++..++ +++++....
T Consensus 236 ---------------------------------~-~~~~n---G~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~ 277 (407)
T 3b9w_A 236 ---------------------------------I-VDMAN---AALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGF 277 (407)
T ss_dssp ---------------------------------H-HHHHH---HTTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHH
T ss_pred ---------------------------------H-HHHHH---hhhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHH
Confidence 0 00111 112222222333355677777777665 444443322
Q ss_pred ceeeccchh-hcccccccCCCeehhhhHHHHHHHHHHHHc
Q 041074 170 FSLWGGGFL-FHWGVMDYSGGYVIHLSSGIAGFTAAYWVG 208 (452)
Q Consensus 170 hwvW~~GwL-~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 208 (452)
.+. .-+| +++++.|.-|...||..+|+.|...+-+..
T Consensus 278 ~~l--~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 278 VFI--QPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp HTH--HHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHS
T ss_pred HHH--HHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHc
Confidence 210 0122 358999999999999999999988776654
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=50.75 E-value=1.6e+02 Score=29.79 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=84.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccch--hHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCC
Q 041074 8 DWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKK--WAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAG 85 (452)
Q Consensus 8 ~~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~k--n~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~ 85 (452)
+.+..-|..+.++-+.+. ++ |-.-|++|+.-.. .+..+++...++.+.+.+.|.++-|-. |+ .+
T Consensus 180 ~~~~~hn~~~~~lG~~lL-W~---GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk--------~~ 245 (399)
T 2b2h_A 180 YSIEPHSIPLTLIGAALL-WF---GWFGFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GK--------PG 245 (399)
T ss_dssp SCCCCSCHHHHHHHHHHH-HH---HHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SC--------CC
T ss_pred CCCCCCCHHHHHHHHHHH-HH---HHHhhcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CC
Confidence 445566777788777666 54 4445676655433 345666777888888889987765432 21 10
Q ss_pred ccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 041074 86 PALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSY 165 (452)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vY 165 (452)
. ....+ .+.+-.....+-++-+++..-++..++ +++++
T Consensus 246 -------------------------------------~-~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~ 283 (399)
T 2b2h_A 246 -------------------------------------S-LGIVS---GAIAGLAAITPAAGFVDVKGAIVIGLV-AGIVC 283 (399)
T ss_dssp -------------------------------------H-HHHHH---HHHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHH
T ss_pred -------------------------------------H-HHHHH---HHHHhhhhhccccccCCHHHHHHHHHH-HHHHH
Confidence 0 00111 222222223334456777777777765 44444
Q ss_pred ccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHc
Q 041074 166 TVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVG 208 (452)
Q Consensus 166 p~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 208 (452)
.... + ..+++++.|.-+...||..+|+.|...+-+..
T Consensus 284 ~~~~-~-----l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 284 YLAM-D-----FRIKKKIDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp HHHH-H-----HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-H-----HHHHcCCCCCCCceeccchhhHHHHHHHHHHc
Confidence 3322 1 24679999999999999999999988776664
No 7
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=36.50 E-value=3.2e+02 Score=27.36 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=85.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccch--hHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCC
Q 041074 8 DWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKK--WAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAG 85 (452)
Q Consensus 8 ~~~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~k--n~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~ 85 (452)
+.+..-|..+.++-+.+. ++ |-.-|++|+.-.. .+..+++...+..+.+.+.|.++-|-. .| +.
T Consensus 191 ~~~~~hn~~~~~lGt~lL-W~---GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~g--------k~- 256 (385)
T 1u7g_A 191 EAFKPHNLPMVFTGTAIL-YI---GWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RG--------LP- 256 (385)
T ss_dssp SSCCGGGHHHHHHHHHHH-HH---HHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HS--------SC-
T ss_pred CCCCCCCHHHHHHHHHHH-HH---HHhhhcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cC--------CC-
Confidence 455666777888877666 54 4444666654433 345666777888888888887664321 11 10
Q ss_pred ccchhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 041074 86 PALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSY 165 (452)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vY 165 (452)
+.. -..+ .+.+-.....+-++-+++..-++..++ +++++
T Consensus 257 ------------------------------------~~~-~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~ 295 (385)
T 1u7g_A 257 ------------------------------------SLL-GACS---GAIAGLVGVTPACGYIGVGGALIIGVV-AGLAG 295 (385)
T ss_dssp ------------------------------------CHH-HHHH---HHHHHHHHHTTTTTTSCHHHHHHHHHH-HHHHH
T ss_pred ------------------------------------CHH-HHHH---HHHHhhhhhccCCCCCCHHHHHHHHhH-HHHHH
Confidence 000 1112 222222223334467777777777765 55554
Q ss_pred ccccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcc
Q 041074 166 TVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGP 209 (452)
Q Consensus 166 p~~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~ 209 (452)
.....+. .+++++.|.-+...||..+|..|...+-+...
T Consensus 296 ~~~~~~l-----~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 296 LWGVTML-----KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp HHHHHHH-----HHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-----HHhCCCCCCCCCEeecccccHHHHHHHHHhcc
Confidence 4333321 24689999999999999999999887766653
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=19.17 E-value=1.5e+02 Score=30.90 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=49.5
Q ss_pred hhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHHhhcccCccccccCccccccchhhhhhhhhhhccCc
Q 041074 290 MITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEP 364 (452)
Q Consensus 290 ~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~ 364 (452)
+.+-.+...+-++-+++.+-++..++..+++... .++ ..++++..|--+.-.||-.+|.-|....-+...+
T Consensus 137 a~t~~IvsGAvaeR~k~~~~li~~~l~~~vY~~~-~w~---~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R 207 (490)
T 3hd6_A 137 VASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVN-EFI---LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR 207 (490)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-HHH---HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-HHH---HHhccCceeecCceeeeHHHHHHHHHHHHhcCCc
Confidence 3344445556677888888887877765554432 222 1235799999999999999999998777666654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.13 E-value=1.7e+02 Score=20.17 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=10.7
Q ss_pred cchHHHHHHHHhhchhh
Q 041074 304 VQGWAAIVMGILSGSVP 320 (452)
Q Consensus 304 v~p~~A~iiG~iag~i~ 320 (452)
-++-.++..|+++|+..
T Consensus 6 ~s~~~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFI 22 (44)
T ss_dssp SCSSHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHH
Confidence 35556677777776654
No 10
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=9.31 E-value=44 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.730 Sum_probs=11.8
Q ss_pred hhcCcccc----cccCCCCCCC
Q 041074 433 AVHGEEAY----ALWGDGEKYD 450 (452)
Q Consensus 433 ~~hg~~ay----~~~~~~~~~~ 450 (452)
..|-++++ ..|+++++|+
T Consensus 3 ~~~~~~aledm~eiFGdG~dY~ 24 (31)
T 3oak_C 3 FTHMSDKIDEMYDIFGDGHDYD 24 (31)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTH
T ss_pred chhHHHHHHHHHHHhCCCchhh
Confidence 34555554 4589999985
Done!