RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041074
         (452 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score =  193 bits (491), Expect = 6e-58
 Identities = 124/413 (30%), Positives = 204/413 (49%), Gaps = 32/413 (7%)

Query: 10  LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAY 69
            +K DNA+ MI   LV   ++PG+ + YG +++ K  ++        FA V I W  + Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 70  KMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQ 129
            ++ G+    F                        +    ++E   V+        V FQ
Sbjct: 63  SLASGEGNNFFGN--------------------INWLMLKNIELTAVMGSIYQYIHVAFQ 102

Query: 130 CVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGG 189
             FA IT+ ++ G++  R+   A + FV +WLT SY   A  +WGGG L   G +D++GG
Sbjct: 103 GSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGG 162

Query: 190 YVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN 249
            V+H+++ IAG   AY +G R    +E F P+N+ M+  G  +L++GW GFN G   TAN
Sbjct: 163 TVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN 222

Query: 250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAA 309
             +++A +NT +  A ++L W + +      PS++GA  G I GLV +TP  G +    A
Sbjct: 223 EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGA 282

Query: 310 IVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSL 369
           +++G+++G    + +  + +      ++DD   VF  H V G++G ++TG+FA   L   
Sbjct: 283 LIIGVVAGLAGLWGVTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL--- 335

Query: 370 FLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRM 422
                   G   G + G Q+L QL   A  I W+ VV  I   + +  + LR+
Sbjct: 336 -----GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383


>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
           {Escherichia coli [TaxId: 562]}
          Length = 401

 Score = 29.0 bits (64), Expect = 1.2
 Identities = 13/73 (17%), Positives = 22/73 (30%)

Query: 145 LGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAA 204
           L  +   A      + +  S+ VG     G G   +  VM         L   + G +  
Sbjct: 196 LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGG 255

Query: 205 YWVGPRSTKDRER 217
           Y    +   +  R
Sbjct: 256 YTAARKEVVEWLR 268


>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum
           anthropi [TaxId: 529]}
          Length = 362

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 5/37 (13%), Positives = 8/37 (21%)

Query: 173 WGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGP 209
                     +M Y    +      I G T+      
Sbjct: 285 NTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDE 321


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.459 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,777,477
Number of extensions: 83487
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 25
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)