Query 041075
Match_columns 181
No_of_seqs 116 out of 380
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 100.0 6.4E-32 2.2E-36 238.7 10.7 151 6-170 160-359 (373)
2 4akf_A VIPD; transferase; 2.90 97.7 9E-06 3.1E-10 75.4 1.8 36 9-56 259-295 (577)
3 3tu3_B EXOU; type III secretio 97.0 0.00013 4.4E-09 68.8 0.5 45 9-56 329-373 (711)
4 4eqa_C PA1845 protein, putativ 17.5 77 0.0026 23.4 2.5 28 23-56 40-69 (153)
5 2o3f_A Putative HTH-type trans 16.4 38 0.0013 23.9 0.6 46 129-175 22-67 (111)
6 3vpj_E TSE1-specific immunity 15.6 90 0.0031 23.8 2.5 27 24-56 80-108 (192)
7 1vr4_A Hypothetical protein AP 11.5 1.4E+02 0.0048 21.0 2.4 36 115-150 50-85 (103)
8 3iwf_A Transcription regulator 10.8 42 0.0014 23.7 -0.6 46 129-175 18-63 (107)
9 2ie4_C PP2A-alpha;, serine/thr 8.2 5.3E+02 0.018 21.2 5.2 55 123-177 24-78 (309)
10 2eo2_A Adult MALE hypothalamus 8.0 2.6E+02 0.0091 18.7 2.6 20 160-180 51-70 (71)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=99.97 E-value=6.4e-32 Score=238.70 Aligned_cols=151 Identities=30% Similarity=0.409 Sum_probs=130.6
Q ss_pred CCCCCCChhhhhhhcCCCCCCCCceeeeccCcCcCCCcceeeeccccceee-----------------------------
Q 041075 6 NASKDAFPSDISTGSSPAPTYVPGSRLINLKPKIQEGVTQSFTYADHGQAS----------------------------- 56 (181)
Q Consensus 6 ~~~~d~~l~DVa~ATSAAPTYFPp~~~~~~~~~~~~g~~~~~~lIDGGv~A----------------------------- 56 (181)
++..++++||||+||||+|+||||+.+... +.+|+.+++.||||||++
T Consensus 160 ~~~~~~~l~~av~ASsA~P~~F~p~~i~~~---d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~~~~~~ 236 (373)
T 1oxw_A 160 SPELDAKMYDISYSTAAAPTYFPPHYFVTN---TSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLN 236 (373)
T ss_dssp CGGGCCBHHHHHHHHHCCTTTSCCEEEEEE---CTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCC
T ss_pred CCccCchHHHHHHHHccCCcCcCcEEeecc---CCCCcccceeeecCcccccCChHHHHHHHHHHHhccCcccccccccc
Confidence 345688999999999999999999999754 223544567999999987
Q ss_pred ------eEeccCC-------------CCCCC-CCchHHHHHHHHhhHHhhhhhhhhhhhhhcCCCCceEEeecCCCCCCC
Q 041075 57 ------WVVGISS-------------TMWEV-PGNSPLVDLFNSAGRDMIHVPMSFDFFRSIASENNYLRFQDNSLSGDA 116 (181)
Q Consensus 57 ------lvlGTG~-------------~~Wg~-~~~~pLidi~~~a~s~~vd~~l~~~l~~~~~~~~~YlRIq~~~l~~~~ 116 (181)
++||||. .+||. +|..||++++|+++++++|++++ ++|+.+.++++|+|||++.++...
T Consensus 237 ~~~~~vvSlGTG~~~~~~~~~~~~~~~~wG~~~w~~~l~~~~~~~~~~~~d~~~~-~~~~~~~~~~~Y~Ri~~~~l~~~~ 315 (373)
T 1oxw_A 237 YKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLS-TAFQALDSKNNYLRVQENALTGTT 315 (373)
T ss_dssp GGGEEEEEECCCCBCTTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHTTCGGGEEEECCCCBCGGG
T ss_pred cCceEEEEecCCCCCCcccccChhhhhhhhhHhHHHHHHHHHHHhhHHHHHHHHH-HHhhccCCCCcEEEEeCCCCCCcc
Confidence 2239997 36888 89999999999999999999999 999877778899999985477777
Q ss_pred CccccccHHHHHHHHHHHHHHhcCCCCccccccceeecCCCCChHHHHHHHHhh
Q 041075 117 PSTDKAIEKEMQELAKIGERLLKKPVSRPVYAMRRIIHSGLCSNSMILALVLST 170 (181)
Q Consensus 117 ~~mDdas~~nl~~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~tn~~~l~~~~~~ 170 (181)
.+||+++++||+.|+++|++++++++.++|++| |+++|++||+-
T Consensus 316 ~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~t----------n~~~l~~~a~~ 359 (373)
T 1oxw_A 316 TEMDDASEANMELLVQVGENLLKKPVSEDNPET----------YEEALKRFAKL 359 (373)
T ss_dssp GCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCB----------HHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHhcccccccchh----------HHHHHHHHHHH
Confidence 799999999999999999999999999998864 99999999974
No 2
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=97.71 E-value=9e-06 Score=75.44 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCCChhhhhhhcCCCCCCCCcee-eeccCcCcCCCcceeeeccccceee
Q 041075 9 KDAFPSDISTGSSPAPTYVPGSR-LINLKPKIQEGVTQSFTYADHGQAS 56 (181)
Q Consensus 9 ~d~~l~DVa~ATSAAPTYFPp~~-~~~~~~~~~~g~~~~~~lIDGGv~A 56 (181)
.++.++|++|||||+|+||||+. +. | ..|+|||+++
T Consensus 259 ~d~~l~dAVRASsAlP~~F~PV~~Id--------G----~~yvDGGV~~ 295 (577)
T 4akf_A 259 PQQSIAQVVQWSGAHPVLFVPGRNAK--------G----EYIADGGILD 295 (577)
T ss_dssp TTSBHHHHHHHHTCCTTTBCCEECTT--------C----CEEECTTSSS
T ss_pred CCCCHHHHHHHHhCccccccCEEeEC--------C----EEEECCCccc
Confidence 46789999999999999999984 42 2 3899999999
No 3
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=97.00 E-value=0.00013 Score=68.84 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=15.7
Q ss_pred CCCChhhhhhhcCCCCCCCCceeeeccCcCcCCCcceeeeccccceee
Q 041075 9 KDAFPSDISTGSSPAPTYVPGSRLINLKPKIQEGVTQSFTYADHGQAS 56 (181)
Q Consensus 9 ~d~~l~DVa~ATSAAPTYFPp~~~~~~~~~~~~g~~~~~~lIDGGv~A 56 (181)
.+++++|+++||+|+|+||||+.+.... =. .+ .....|+|||+..
T Consensus 329 Pd~~I~dAVRASsSlP~vF~PV~I~G~~-f~-~~-~e~~~YVDGGIsd 373 (711)
T 3tu3_B 329 PDLEVAQAAHISGSFPGVFQKVSLSDQP-YQ-AG-VEWTEFQDGGVMI 373 (711)
T ss_dssp TTSBHHHHHHHHHHCC-------------------------------C
T ss_pred CCchHHHHHHHHhcccccCCCEEECCcc-cc-cc-ccCceEeecCcCC
Confidence 4788999999999999999999775320 00 00 0123799999999
No 4
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=17.48 E-value=77 Score=23.38 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=18.5
Q ss_pred CCCCC--CceeeeccCcCcCCCcceeeeccccceee
Q 041075 23 APTYV--PGSRLINLKPKIQEGVTQSFTYADHGQAS 56 (181)
Q Consensus 23 APTYF--Pp~~~~~~~~~~~~g~~~~~~lIDGGv~A 56 (181)
-|--| ||..+... ++ | ..+..-|||+|.
T Consensus 40 npdafpeppvyladr---ds-g--ndcriedggiws 69 (153)
T 4eqa_C 40 NPDAFPEPPVYLADR---DS-G--NDCRIEDGGIWS 69 (153)
T ss_dssp SCSEECSCCEEEEET---TT-C--CEEEECSCCCEE
T ss_pred CcccCCCCCeEeecc---CC-C--CcceeecCcEee
Confidence 35666 46666544 32 4 367888999998
No 5
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=16.36 E-value=38 Score=23.91 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCccccccceeecCCCCChHHHHHHHHhhcCCCC
Q 041075 129 ELAKIGERLLKKPVSRPVYAMRRIIHSGLCSNSMILALVLSTSGFNS 175 (181)
Q Consensus 129 ~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~tn~~~l~~~~~~~~~~~ 175 (181)
....+|+-+++.+..........+.. ..++-...+.||++..||.+
T Consensus 22 ~e~~ia~yil~~~~~~~~~si~elA~-~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 22 SERKLADYILAHPHXAIESTVNEISA-LANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHHHHHHHCHHHHHTCCHHHHHH-HTTCCHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHChHHHHhcCHHHHHH-HHCCCHHHHHHHHHHcCCCC
Confidence 34567888887765554444444443 24567889999999999975
No 6
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=15.55 E-value=90 Score=23.77 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCCC--CceeeeccCcCcCCCcceeeeccccceee
Q 041075 24 PTYV--PGSRLINLKPKIQEGVTQSFTYADHGQAS 56 (181)
Q Consensus 24 PTYF--Pp~~~~~~~~~~~~g~~~~~~lIDGGv~A 56 (181)
|--| ||..+... ++ | ..+..-|||+|.
T Consensus 80 pdafpeppvyladr---ds-g--ndcriedggiws 108 (192)
T 3vpj_E 80 PDAFPEPPVYLADR---DS-G--NDCRIEDGGIWS 108 (192)
T ss_dssp CSEECSCCEEEEET---TT-S--CEEEECSCCCEE
T ss_pred cccCCCCCeeeecc---CC-C--CcceeccCceee
Confidence 5556 45555544 32 3 367888999998
No 7
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=11.51 E-value=1.4e+02 Score=21.03 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=27.6
Q ss_pred CCCccccccHHHHHHHHHHHHHHhcCCCCccccccc
Q 041075 115 DAPSTDKAIEKEMQELAKIGERLLKKPVSRPVYAMR 150 (181)
Q Consensus 115 ~~~~mDdas~~nl~~L~~~a~~ll~~~~~~~~~~~~ 150 (181)
-...|+++.++++++|++-|+++=.+-..-++.++.
T Consensus 50 y~~~l~~aR~~A~~rm~~~A~~lGAnAVVgvr~d~~ 85 (103)
T 1vr4_A 50 YESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYE 85 (103)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEee
Confidence 355799999999999999999987766555444443
No 8
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=10.83 E-value=42 Score=23.71 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCccccccceeecCCCCChHHHHHHHHhhcCCCC
Q 041075 129 ELAKIGERLLKKPVSRPVYAMRRIIHSGLCSNSMILALVLSTSGFNS 175 (181)
Q Consensus 129 ~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~tn~~~l~~~~~~~~~~~ 175 (181)
.-..+|+-+++.+..........+.. ..++-...+.||++..||.+
T Consensus 18 ~e~~ia~yil~~~~~~~~~si~elA~-~~~vS~aTv~Rf~kkLGf~g 63 (107)
T 3iwf_A 18 NEKKIAQFILNYPHKVVNMTSQEIAN-QLETSSTSIIRLSKKVTPGG 63 (107)
T ss_dssp HHHHHHHHHHHCHHHHTTCCHHHHHH-HHTSCHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHhCHHHHHHCCHHHHHH-HHCCCHHHHHHHHHHhCCCC
Confidence 44567888888776555555544444 23567889999999999974
No 9
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=8.17 E-value=5.3e+02 Score=21.25 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCCccccccceeecCCCCChHHHHHHHHhhcCCCCCc
Q 041075 123 IEKEMQELAKIGERLLKKPVSRPVYAMRRIIHSGLCSNSMILALVLSTSGFNSST 177 (181)
Q Consensus 123 s~~nl~~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~tn~~~l~~~~~~~~~~~~~ 177 (181)
+++.+..|...+.+++.+.-..+.+.+..+.--.-+-|..+|.++.+..|+...+
T Consensus 24 ~~~~~~~l~~~~~~il~~e~~~~~~~~~i~viGDIHG~~~~L~~ll~~~~~~~~~ 78 (309)
T 2ie4_C 24 SESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDT 78 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTEEECSSEEEECCCTTCHHHHHHHHHHHCCTTTS
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEeccCCEEEEecCCCCHHHHHHHHHHcCCCCCC
Confidence 3677899999999998877666665544333344567899999999998886543
No 10
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=8.01 E-value=2.6e+02 Score=18.70 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhcCCCCCcccc
Q 041075 160 NSMILALVLSTSGFNSSTINW 180 (181)
Q Consensus 160 n~~~l~~~~~~~~~~~~~~~~ 180 (181)
.+|.+.+||+ .....+||.|
T Consensus 51 T~eEi~~FaR-LdIDP~TITw 70 (71)
T 2eo2_A 51 TEEEVRKFAR-LNIDPATITW 70 (71)
T ss_dssp CHHHHHHHHH-TCCCSTTCCC
T ss_pred CHHHHhhcee-cccCccceee
Confidence 5678899998 4688889988
Done!