BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041076
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I
(Tag)
pdb|1NKU|A Chain A, Nmr Solution Structure Of Zinc-Binding Protein 3-
Methyladenine Dna Glycosylase I (Tag)
pdb|1P7M|A Chain A, Solution Structure And Base Perturbation Studies Reveal A
Novel Mode Of Alkylated Base Recognition By 3-
Methyladenine Dna Glycosylase I
Length = 187
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
+RC +++ DP+++AYHD EWGVP + LFE++ L G Q G W ++LKKR+ +R
Sbjct: 2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
F F+ VA + ++ + + + I R ++ ++ N+ L++++ F ++W F
Sbjct: 60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119
Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
VNH+P TQ +IP T S+++SK + +RGF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I
(Tag)
pdb|2OFK|B Chain B, Crystal Structure Of 3-Methyladenine Dna Glycosylase I
(Tag)
Length = 183
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 109/183 (59%), Gaps = 4/183 (2%)
Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
+RC +++ DP+++AYHD EWGVP + LFE++ L G Q G W ++LKKR+ +R
Sbjct: 2 QRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
F F+ +A + ++ + + I R ++ ++ N+ L +++ SF ++W F
Sbjct: 60 FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSF 119
Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
V+ +P TQ KIP T S++++K + +RGF+FVG T+ +SFMQA GL NDH+ C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGC 179
Query: 388 HRH 390
H
Sbjct: 180 FCH 182
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I
(Tag) Bound To Dna3MA
Length = 184
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
+RC +++ DP+++AYHD EWGVP + LFE + L G Q G W ++LKKR+ +R
Sbjct: 2 QRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEXICLEGQQAGLSWITVLKKRENYRAC 59
Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
F F+ +A ++ + + I R ++ ++ N+ L ++ SF ++W F
Sbjct: 60 FHQFDPIRIAAXQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAXEQNGESFADFVWSF 119
Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
V+ +P TQ KIP T S++++K + +RGF+FVG T+ +SF QA GL NDH+ C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFXQACGLVNDHITGC 179
Query: 388 HRH 390
H
Sbjct: 180 FCH 182
>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By
3-Methyladenine Dna Glycosylase I (Tag) From
Staphylococcus Aureus
pdb|4AIA|B Chain B, The Structural Basis Of 3-Methyladenine Recognition By
3-Methyladenine Dna Glycosylase I (Tag) From
Staphylococcus Aureus
pdb|4AIA|C Chain C, The Structural Basis Of 3-Methyladenine Recognition By
3-Methyladenine Dna Glycosylase I (Tag) From
Staphylococcus Aureus
pdb|4AIA|D Chain D, The Structural Basis Of 3-Methyladenine Recognition By
3-Methyladenine Dna Glycosylase I (Tag) From
Staphylococcus Aureus
pdb|4AIA|E Chain E, The Structural Basis Of 3-Methyladenine Recognition By
3-Methyladenine Dna Glycosylase I (Tag) From
Staphylococcus Aureus
Length = 188
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 211 RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAF 270
C+F T DP+++ YHD WG P+ + LF+LL L G W +ILKK++ + +AF
Sbjct: 5 ECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 62
Query: 271 SGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGFV 328
FE E VA+++ + + + T +I R + +V+ + L++++ +GSF K++W +V
Sbjct: 63 YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV 122
Query: 329 NHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
N KP QY+ + +SKD+ + GF+F+GP V SF++AAGL + HL C
Sbjct: 123 NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 181
>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I
From Staphylococcus Aureus
Length = 186
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 211 RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAF 270
C+F T DP+++ YHD WG P+ + LF+LL L G W +ILKK++ + +AF
Sbjct: 3 ECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 60
Query: 271 SGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGFV 328
FE E VA+++ + + + T +I R + +V+ + L++++ +GSF K++W +V
Sbjct: 61 YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV 120
Query: 329 NHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
N KP QY+ + +SKD+ + GF+F+GP V SF++AAGL + HL C
Sbjct: 121 NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 179
>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna
Glycosylase I From Staphylococcus Aureus
Length = 188
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 211 RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAF 270
C+F T DP+++ YHD WG P+ + LF+LL L G W +ILKK++ + +AF
Sbjct: 5 ECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYEEAF 62
Query: 271 SGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGFV 328
FE E VA+++ + + + T +I R + +V+ + L++++ +GSF K++W +V
Sbjct: 63 YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV 122
Query: 329 NHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
N KP QY+ + +SKD+ + GF+F+GP V SF++AAGL + HL C
Sbjct: 123 NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 181
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|B Chain B, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|C Chain C, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|D Chain D, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|E Chain E, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
Length = 188
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 211 RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAF 270
C+F T DP+++ +HD WG P+ + LF+LL L G W +ILKK++ + +AF
Sbjct: 5 ECAFGT--KDPVYLNFHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 62
Query: 271 SGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGFV 328
FE E VA+++ + + + T +I R + +V+ + L++++ +GSF K++W +V
Sbjct: 63 YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV 122
Query: 329 NHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
N KP QY+ + +SKD+ + GF+F+GP V SF++AAGL + HL C
Sbjct: 123 NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 181
>pdb|2GRV|A Chain A, Crystal Structure Of Lpqw
pdb|2GRV|B Chain B, Crystal Structure Of Lpqw
pdb|2GRV|C Chain C, Crystal Structure Of Lpqw
Length = 621
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 197 ARSTPTTGEQQEEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLF 242
AR+ P TG Q R I D I +A +D W VP + D +LF
Sbjct: 210 ARAMPVTGGQ---FRVETIDPQRDEILLARNDRFWSVPAKPDLVLF 252
>pdb|1IKT|A Chain A, Liganded Sterol Carrier Protein Type 2 (Scp-2) Like Domain
Of Human Multifunctional Enzyme Type 2 (Mfe-2)
Length = 120
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 235 VRNDNMLFELLVLSGAQVGSDWTSILKKRQG--FRDAFSGFEAETVAKLSDKQMMSI 289
V+ N +FE + G +G+ WT LK G ++ G A+T LSD+ M +
Sbjct: 27 VKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKG-AADTTIILSDEDFMEV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,715,088
Number of Sequences: 62578
Number of extensions: 390348
Number of successful extensions: 905
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 10
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)