BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041076
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 111/188 (59%), Gaps = 5/188 (2%)
Query: 207 QEEKRCSFITAYSDP---IFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKR 263
+E+ RC++ T + ++ YHD EWG P+ D LFE LVL G Q G W +ILKKR
Sbjct: 783 REKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITILKKR 842
Query: 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSI--DMSRVRGVVDNSNRILEVKRVFGSFE 321
+ FR AF F+ VA + ++ + I + +++ + N+ + V+R FGSF+
Sbjct: 843 EAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFGSFD 902
Query: 322 KYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTN 381
KYIWGFV KPI ++ +P T S+ I+KD+ +RGF+FVG T +++ MQ+ G+ N
Sbjct: 903 KYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIGMVN 962
Query: 382 DHLIICHR 389
DHL C +
Sbjct: 963 DHLTSCFK 970
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
GN=tag PE=1 SV=1
Length = 187
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 112/180 (62%), Gaps = 4/180 (2%)
Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
+RC +++ DP+++AYHD EWGVP + LFE++ L G Q G W ++LKKR+ +R
Sbjct: 2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
F F+ VA + ++ + + + I R ++ ++ N+ L++++ F ++W F
Sbjct: 60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSF 119
Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
VNH+P TQ +IP TS S+++SK + +RGF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
Length = 185
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 211 RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAF 270
RC ++ S I++ YHD+EWG P + LFE + L G Q G W ++LKKR+ +R+AF
Sbjct: 4 RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61
Query: 271 SGFEAETVAKLSDKQMMSISTEYSIDMSRVR--GVVDNSNRILEVKRVFGSFEKYIWGFV 328
F+ + +AK++ + + + R + +V N+ L +++ +F +IW FV
Sbjct: 62 HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121
Query: 329 NHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICH 388
NHKPI +P KT S+++SK + +RGF F+G T ++FMQ+ GL +DHL C
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC- 180
Query: 389 RHLPC 393
PC
Sbjct: 181 ---PC 182
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 39.3 bits (90), Expect = 0.056, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 KDKVTTGMNEATPTMVAKINGRPVLQPTCNRVPSKLDRRNTLN 47
K++ G+ EA+P + + GRPV QP C +PS+ R T N
Sbjct: 2103 KEEAVRGLEEASPLVTSIALGRPVPQPLCRVIPSRFLERQTYN 2145
>sp|Q5U2S3|ZUFSP_RAT Zinc finger with UFM1-specific peptidase domain protein OS=Rattus
norvegicus GN=Zufsp PE=2 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 145 MDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTG 204
+D+ G + M L+ + +M + + K+ ES V + D +
Sbjct: 268 LDNSGGYKQQQLRHMELEVTRGRMHPSEFHSRKADMLESIAVGIDDGKTKTSGIIEALHR 327
Query: 205 EQQE---EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELL----VLSGAQVGSDWT 257
Q + RC +++ D ++ D+ WG RN ML L V S G
Sbjct: 328 YYQNIATDVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNEVYSDCLKGMSVP 387
Query: 258 SILKKRQGFRDAFS-GFEAETVAKLSDK 284
I K + DA++ GF+ + ++L++K
Sbjct: 388 CIPKIQSMIEDAWNEGFDPQGASQLNNK 415
>sp|Q2S4I1|Y763_SALRD Maf-like protein SRU_0763 OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=SRU_0763 PE=3 SV=2
Length = 204
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 101 VTPRSNIRTLERKKSKSFKEGGNVERTAALMMSTNTSTYSSSLIM----DSPGSIAAVRR 156
V P +RTL R+K++ +R +AL+++ +T I+ DS + A +RR
Sbjct: 46 VAPAEAVRTLARRKARPVA----ADRPSALVLAADTVVAHDGEILNKPEDSSHARAMLRR 101
Query: 157 EQMALQHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTGEQQEEKRCSFIT 216
Q + + H G ++A + P ++ R+ +G ++ I
Sbjct: 102 LQDTSHAVYTGVSLVHAGSDRTATAVETTAVVLGPLSDAEIRAYVASGSPLDKAGGYGIQ 161
Query: 217 AYSDPIFVAYHDEEW----GVPVR 236
++ P FV + ++ G+P+R
Sbjct: 162 DHTAPFFVERIEGDYYNVVGLPLR 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,207,917
Number of Sequences: 539616
Number of extensions: 6579597
Number of successful extensions: 32538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 31120
Number of HSP's gapped (non-prelim): 1251
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)