Query 041076
Match_columns 420
No_of_seqs 155 out of 1139
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 5.5E-87 1.9E-91 614.6 18.6 182 209-392 1-184 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 5.4E-86 1.8E-90 606.8 18.8 181 209-391 1-183 (183)
3 3n0u_A Probable N-glycosylase/ 97.4 0.0003 1E-08 65.8 7.7 105 237-379 46-152 (219)
4 1kea_A Possible G-T mismatches 96.7 0.012 4E-07 54.4 11.3 102 241-378 35-136 (221)
5 1pu6_A 3-methyladenine DNA gly 96.3 0.03 1E-06 51.6 11.3 108 241-378 30-142 (218)
6 1orn_A Endonuclease III; DNA r 96.2 0.029 9.9E-07 52.0 10.7 69 241-311 33-101 (226)
7 1kg2_A A/G-specific adenine gl 96.2 0.035 1.2E-06 51.2 11.0 69 240-311 29-97 (225)
8 3n5n_X A/G-specific adenine DN 96.0 0.083 2.8E-06 51.3 13.3 71 238-311 46-116 (287)
9 2yg9_A DNA-3-methyladenine gly 96.0 0.047 1.6E-06 50.7 10.8 129 218-377 37-166 (225)
10 2abk_A Endonuclease III; DNA-r 95.1 0.051 1.8E-06 49.6 7.6 71 240-312 28-98 (211)
11 3s6i_A DNA-3-methyladenine gly 95.0 0.15 5.3E-06 47.4 10.5 129 219-380 25-163 (228)
12 2h56_A DNA-3-methyladenine gly 95.0 0.042 1.4E-06 51.2 6.7 130 219-379 29-161 (233)
13 3fsp_A A/G-specific adenine gl 94.7 0.26 8.8E-06 48.3 11.8 88 222-312 20-107 (369)
14 3fhg_A Mjogg, N-glycosylase/DN 94.6 0.15 5E-06 46.7 9.3 110 236-379 28-139 (207)
15 4e9f_A Methyl-CPG-binding doma 93.6 0.32 1.1E-05 43.5 9.0 65 242-308 32-96 (161)
16 4b21_A Probable DNA-3-methylad 93.0 0.31 1E-05 45.6 8.3 129 219-377 36-170 (232)
17 3fhf_A Mjogg, N-glycosylase/DN 92.8 0.7 2.4E-05 43.0 10.4 107 236-379 39-147 (214)
18 2jhn_A ALKA, 3-methyladenine D 92.6 0.56 1.9E-05 44.9 9.7 124 219-378 94-232 (295)
19 3i0w_A 8-oxoguanine-DNA-glycos 88.6 1.8 6.1E-05 41.5 9.2 129 219-380 94-235 (290)
20 1mpg_A ALKA, 3-methyladenine D 84.4 3.2 0.00011 39.3 8.4 122 231-385 103-241 (282)
21 2xhi_A N-glycosylase/DNA lyase 79.8 4.4 0.00015 40.2 7.8 131 219-379 131-276 (360)
22 2d3d_A VTS1 protein; RNA bindi 71.7 6.5 0.00022 32.4 5.5 46 264-309 31-76 (88)
23 2b6g_A VTS1P; alpha-helix, pen 64.2 15 0.00051 31.8 6.4 54 256-310 55-108 (119)
24 2es6_A VTS1P; SAM domain, prot 62.1 11 0.00036 32.0 5.0 46 264-309 44-89 (101)
25 1v38_A SAM-domain protein sams 62.1 8.9 0.0003 30.0 4.3 43 264-306 25-70 (78)
26 1ucv_A Ephrin type-A receptor 57.5 16 0.00056 28.5 5.1 45 264-308 20-67 (81)
27 2kso_A Ephrin type-A receptor 55.7 26 0.00088 27.6 6.0 45 264-308 29-76 (82)
28 1b4f_A EPHB2; SAM domain, EPH 53.9 19 0.00066 27.9 4.9 46 265-310 25-73 (82)
29 2p5k_A Arginine repressor; DNA 53.1 14 0.00049 26.2 3.8 30 350-380 22-51 (64)
30 2dl0_A SAM and SH3 domain-cont 52.1 10 0.00034 31.2 3.1 43 264-306 36-81 (97)
31 2eao_A Ephrin type-B receptor 48.8 23 0.00079 28.7 4.8 42 265-306 36-80 (99)
32 1eh2_A EPS15; calcium binding, 47.0 7.8 0.00027 31.5 1.7 50 252-302 3-52 (106)
33 2e8n_A Ephrin type-A receptor 45.8 19 0.00065 28.5 3.8 46 264-309 25-73 (88)
34 1b0x_A Protein (EPHA4 receptor 45.1 32 0.0011 27.6 5.0 46 264-309 39-87 (94)
35 2k4p_A Phosphatidylinositol-3, 44.6 26 0.00089 28.2 4.4 42 264-305 39-83 (86)
36 1x40_A ARAP2; ASAP-related pro 44.4 22 0.00076 28.5 4.0 39 264-306 28-73 (91)
37 3k1r_B Usher syndrome type-1G 43.2 50 0.0017 25.6 5.8 41 264-308 19-60 (74)
38 2qkq_A Ephrin type-B receptor 42.9 28 0.00096 27.1 4.3 45 264-308 28-75 (83)
39 3h8m_A Ephrin type-A receptor 42.5 36 0.0012 27.5 5.0 39 264-306 38-83 (90)
40 1oxj_A RNA-binding protein sma 42.0 35 0.0012 31.4 5.3 41 264-308 20-63 (173)
41 3kka_C Ephrin type-A receptor 40.9 32 0.0011 27.5 4.4 39 264-306 34-79 (86)
42 1fi6_A EH domain protein REPS1 40.1 5.7 0.0002 30.6 -0.1 43 261-303 6-48 (92)
43 3hil_A Ephrin type-A receptor 40.1 27 0.00092 27.7 3.8 38 264-305 36-80 (82)
44 3sei_A Caskin-1; SAM domain, p 38.0 31 0.0011 30.0 4.2 43 264-306 23-67 (149)
45 2kg5_A ARF-GAP, RHO-GAP domain 36.5 40 0.0014 27.7 4.4 43 264-306 39-84 (100)
46 2ean_A Connector enhancer of k 36.0 65 0.0022 24.8 5.4 44 264-309 32-75 (83)
47 3sei_A Caskin-1; SAM domain, p 34.9 61 0.0021 28.1 5.6 45 265-309 93-140 (149)
48 1c07_A Protein (epidermal grow 32.8 6.1 0.00021 30.7 -1.1 44 261-304 7-50 (95)
49 2znm_A Thiol:disulfide interch 32.4 84 0.0029 26.4 6.0 90 210-307 32-130 (195)
50 2jq6_A EH domain-containing pr 31.7 10 0.00034 32.9 0.0 48 254-303 42-89 (139)
51 2gle_A Neurabin-1; SAM domain, 30.0 1.2E+02 0.004 22.7 5.8 41 264-308 22-68 (74)
52 3bs5_B Connector enhancer of k 30.0 78 0.0027 24.1 4.9 43 264-308 28-70 (80)
53 4h62_V Mediator of RNA polymer 29.9 17 0.00057 24.6 0.9 15 278-292 6-20 (31)
54 2kgr_A Intersectin-1; structur 28.8 13 0.00044 29.9 0.2 48 256-303 6-53 (111)
55 1qjt_A EH1, epidermal growth f 27.6 17 0.00059 28.6 0.8 42 261-302 8-49 (99)
56 2lc0_A Putative uncharacterize 26.1 23 0.00078 30.7 1.3 26 347-372 83-108 (132)
57 3l78_A Regulatory protein SPX; 24.9 30 0.001 28.5 1.8 42 251-297 48-91 (120)
58 2p4g_A Hypothetical protein; p 24.7 50 0.0017 30.7 3.5 32 349-382 176-211 (270)
59 2f3n_A SH3 and multiple ankyri 24.5 77 0.0026 24.1 4.0 44 266-309 22-67 (76)
60 2yvq_A Carbamoyl-phosphate syn 24.0 50 0.0017 28.2 3.0 31 349-379 38-68 (143)
61 3j04_B Myosin regulatory light 22.0 44 0.0015 25.9 2.2 45 262-306 5-51 (143)
62 2kiv_A Ankyrin repeat and ster 22.0 63 0.0022 27.7 3.3 42 265-306 28-74 (148)
63 2lmr_A ODIN, ankyrin repeat an 21.2 65 0.0022 26.6 3.1 43 264-306 42-89 (101)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=5.5e-87 Score=614.59 Aligned_cols=182 Identities=34% Similarity=0.711 Sum_probs=177.6
Q ss_pred CCCCcCccCCCChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 041076 209 EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMS 288 (420)
Q Consensus 209 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIer 288 (420)
|+||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|+|||+
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 57999985 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcChhH--HHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076 289 ISTEYSIDM--SRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG 366 (420)
Q Consensus 289 Ll~D~gIIR--~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG 366 (420)
||+|++||| +||+|+|+|||++++|++|||||++|||+|++++||+|++.+..++|++|++|++||||||||||+|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG 158 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG 158 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence 999999985 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccccccccccccc
Q 041076 367 PTVVHSFMQAAGLTNDHLIICHRHLP 392 (420)
Q Consensus 367 PTtvYSFMQAiGlVNDHl~~C~~~~~ 392 (420)
|||||+||||+||||||+++|+++.+
T Consensus 159 pt~~YafmQA~G~vndH~~~C~~~~~ 184 (186)
T 2jg6_A 159 PVTVFSFLEAAGLYDAHLKDCPSKPK 184 (186)
T ss_dssp HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred hHHHHHHHHHhcccCccccCccccCC
Confidence 99999999999999999999988743
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=5.4e-86 Score=606.81 Aligned_cols=181 Identities=36% Similarity=0.747 Sum_probs=176.4
Q ss_pred CCCCcCccCCCChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 041076 209 EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMS 288 (420)
Q Consensus 209 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIer 288 (420)
|+||.|++ +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||.|+|+|||+
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 57999985 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcChhH--HHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076 289 ISTEYSIDM--SRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG 366 (420)
Q Consensus 289 Ll~D~gIIR--~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG 366 (420)
||+|++||| +||+|+|+|||++++|++|||||++|||+||+++||++++.+..++|++|++|++|||+||||||+|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG 158 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG 158 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence 999999985 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcccccccccccccc
Q 041076 367 PTVVHSFMQAAGLTNDHLIICHRHL 391 (420)
Q Consensus 367 PTtvYSFMQAiGlVNDHl~~C~~~~ 391 (420)
|||||+||||+||||||+++|++|.
T Consensus 159 pT~~yafmQA~G~VndH~~~C~~~~ 183 (183)
T 2ofk_A 159 TTICYSFMQACGLVNDHITGCFCHP 183 (183)
T ss_dssp HHHHHHHHHHTTSEECCCTTSTTCC
T ss_pred hHHHHHHHHHcCcccCcccCCCCCC
Confidence 9999999999999999999998863
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.41 E-value=0.0003 Score=65.81 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcC--hhHHHHHHHHhhHHHHHHHH
Q 041076 237 NDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYS--IDMSRVRGVVDNSNRILEVK 314 (420)
Q Consensus 237 DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~g--IIR~KI~AVI~NAraiL~I~ 314 (420)
.+.-.||.|+..++.+..+|..+.+-.+.+ |+.++..++++|++++..-| +-++|.+.++++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i---- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL---- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT----
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----
Confidence 577899999999999999999998766655 78899999999999999999 7789999999999876
Q ss_pred HhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 041076 315 RVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGL 379 (420)
Q Consensus 315 ~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQAiGl 379 (420)
|+|.++. ++ ++ ...-++|.+ .++-|||.|+..||...|.
T Consensus 114 ---g~l~~~~----~~-~~-----------------~~~r~~L~~-~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 114 ---GKLKNLV----KG-DP-----------------FQSREFLVR-NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp ---TTHHHHH----HS-CH-----------------HHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred ---HHHHHHh----cC-Cc-----------------HHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 4554433 11 11 112234543 3789999999999987776
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.72 E-value=0.012 Score=54.35 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHHHHHHhhCCH
Q 041076 241 LFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSF 320 (420)
Q Consensus 241 LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL~I~~E~GSF 320 (420)
.||.|+-+++-.-.+|..|.+-...|.+.| .+++.|+..++++|++++..-|+-+.|.+.++.=|+.+++ ++|+
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~---~~~g- 108 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIN---DYGG- 108 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH---HHTT-
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HhCC-
Confidence 799999999999999999999999999987 5799999999999999999999999999999988888754 3322
Q ss_pred hHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHHhc
Q 041076 321 EKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAG 378 (420)
Q Consensus 321 ~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQAiG 378 (420)
++|. .-++|. .++-|||.|+..+|.-++
T Consensus 109 ---------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 109 ---------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp ---------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred ---------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHhc
Confidence 1121 112444 378899999988876543
No 5
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=96.32 E-value=0.03 Score=51.64 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhccccHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHHHHHH
Q 041076 241 LFELLVLSGAQVGSDWTSILKKRQGFRDA-FSGFE----AETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKR 315 (420)
Q Consensus 241 LFEmL~LEgFQAGLSW~tVLkKReafReA-F~gFD----pekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL~I~~ 315 (420)
-||.|+-.+.-.-.+|..|.+-...|.+. |-..+ ++.++..++++|++++..-|+-++|.+.++.=|+.++ +
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~---~ 106 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNIL---K 106 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHH---H
Confidence 59999999999999999999988888887 65422 9999999999999999999999999999988888763 5
Q ss_pred hhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHHhc
Q 041076 316 VFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAG 378 (420)
Q Consensus 316 E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQAiG 378 (420)
++|+|..+- . + ..-++|. .++-|||-|+..+|..++
T Consensus 107 ~~~~l~~~~--~----~-------------------~~~~~L~--~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 107 DFQSFENFK--Q----E-------------------VTREWLL--DQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHSSHHHHH--H----H-------------------CCHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred hcCChhhcc--c----h-------------------HHHHHHH--cCCCcCHHHHHHHHHHHC
Confidence 567775420 0 0 0112354 488899999988887543
No 6
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.22 E-value=0.029 Score=52.04 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHH
Q 041076 241 LFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRIL 311 (420)
Q Consensus 241 LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL 311 (420)
.||.|+-+++-.-.+|..|.+-...|.+.|- +++.|+..++++|++++..-|+-+.|.+.++.=|+.+.
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~ 101 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLI 101 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999988884 89999999999999999999999999999999888875
No 7
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=96.18 E-value=0.035 Score=51.23 Aligned_cols=69 Identities=9% Similarity=0.134 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHH
Q 041076 240 MLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRIL 311 (420)
Q Consensus 240 ~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL 311 (420)
-.||.|+-+++-.-.+|..|.+-...|.+.| .+++.++..++++|++++..-|+- +|.+.++.=|+.++
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~ 97 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVA 97 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHH
Confidence 4799999999999999999998888887776 479999999999999999988987 48888888888775
No 8
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.083 Score=51.35 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHH
Q 041076 238 DNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRIL 311 (420)
Q Consensus 238 Dr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL 311 (420)
.+-.||.|+-+++-.-.+|..|.+-...|.+.|- +++.++..++++|++++.--|+-+ |.+.++.=|+.++
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~ 116 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVV 116 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence 4789999999999999999999999999999885 899999999999999999999987 8888888888774
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.96 E-value=0.047 Score=50.68 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCChhhhhhhhcCCCc-ccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChh
Q 041076 218 YSDPIFVAYHDEEWGV-PVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSID 296 (420)
Q Consensus 218 ~~dply~~YHD~EWG~-Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gII 296 (420)
..||.+..-.+..-|. +....+-.||.|+-.+.-.-.||..+.+-+..|.+.|...+++.|+..+++++ ..-|+-
T Consensus 37 ~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~ 112 (225)
T 2yg9_A 37 SRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLS 112 (225)
T ss_dssp TTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCC
T ss_pred hcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCc
Confidence 3688877666655555 44455568999999999999999999999999999998899999999999887 445666
Q ss_pred HHHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHH
Q 041076 297 MSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQA 376 (420)
Q Consensus 297 R~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQA 376 (420)
++|.+.++.=|+.+.+ ...+|+. ..++| . +.+-++|. .++-|||-|+..+|..
T Consensus 113 ~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~----~-~e~~~~L~--~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 113 WAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP----D-ELVIAELV--QLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC----H-HHHHHHHH--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC----H-HHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 8899999999988854 1112221 11111 1 22345565 4899999999988875
Q ss_pred h
Q 041076 377 A 377 (420)
Q Consensus 377 i 377 (420)
+
T Consensus 166 ~ 166 (225)
T 2yg9_A 166 A 166 (225)
T ss_dssp T
T ss_pred h
Confidence 4
No 10
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=95.10 E-value=0.051 Score=49.56 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHHHH
Q 041076 240 MLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILE 312 (420)
Q Consensus 240 ~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAraiL~ 312 (420)
-.||.|+-+++-.-.+|..|.+-.+.|.+.| .+++.++..++++|++++..-|+-+.|.+.++.=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4799999999999999999988777775554 4799999999999999999999988999999888888753
No 11
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.97 E-value=0.15 Score=47.37 Aligned_cols=129 Identities=9% Similarity=0.076 Sum_probs=93.1
Q ss_pred CChhhhhhhhcCCCcccC--ChH-HHHHHHHHHHHhccccHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhc
Q 041076 219 SDPIFVAYHDEEWGVPVR--NDN-MLFELLVLSGAQVGSDWTSILKKRQGFRDAF---SGF-EAETVAKLSDKQMMSIST 291 (420)
Q Consensus 219 ~dply~~YHD~EWG~Pv~--DDr-~LFEmL~LEgFQAGLSW~tVLkKReafReAF---~gF-DpekVA~~~EedIerLl~ 291 (420)
.||.+..-.+..-|..+. ..+ -.||.|+-.+.-.-.||..+.+-+..| +.| ..| +++.|+..++++| .
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r 99 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----R 99 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----H
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----H
Confidence 688887777665554442 223 579999999999999999999999999 888 345 9999999999987 3
Q ss_pred CcChhHHHHHHHHhhHHHHHHHHHhhCCHh--HhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhh
Q 041076 292 EYSIDMSRVRGVVDNSNRILEVKRVFGSFE--KYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTV 369 (420)
Q Consensus 292 D~gIIR~KI~AVI~NAraiL~I~~E~GSF~--~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTt 369 (420)
.-|+-++|.+.+++=|+++.+ |.+. +.+-. ++ -+.+-++|. .++-|||-|
T Consensus 100 ~~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~~T 151 (228)
T 3s6i_A 100 ACGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGRWT 151 (228)
T ss_dssp HHTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCHHH
Confidence 456778899999999998852 4331 11211 11 123445565 489999999
Q ss_pred HHHHHH-Hhccc
Q 041076 370 VHSFMQ-AAGLT 380 (420)
Q Consensus 370 vYSFMQ-AiGlV 380 (420)
+..+|. +.|-.
T Consensus 152 A~~ill~~lg~p 163 (228)
T 3s6i_A 152 VEMLLIFSLNRD 163 (228)
T ss_dssp HHHHHHHTSCCS
T ss_pred HHHHHHHhCCCC
Confidence 988875 45643
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=94.96 E-value=0.042 Score=51.18 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=93.3
Q ss_pred CChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhhcCcChh
Q 041076 219 SDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGF--EAETVAKLSDKQMMSISTEYSID 296 (420)
Q Consensus 219 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gF--DpekVA~~~EedIerLl~D~gII 296 (420)
.||.+....+..-|.+....+-.||.|+-.+.-.-.+|..+.+-...|.+.|..+ +++.|+..++++| ..-|+-
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~ 104 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVS 104 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCC
Confidence 5777665554444444434445899999999999999999999999999999777 9999999999987 345667
Q ss_pred HHHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHH
Q 041076 297 MSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQA 376 (420)
Q Consensus 297 R~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQA 376 (420)
++|.+.++.=|+.+++ .+.++..+ . .+| . +..-++|. .++-|||-|+-.+|..
T Consensus 105 ~~KA~~I~~~A~~i~~---~~~~~~~l-~----------------~~p----~-~~~~~~L~--~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 105 KRKIEYIRHVCEHVES---GRLDFTEL-E----------------GAE----A-TTVIEKLT--AIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHHHHHHHHHHHT---TSSCHHHH-T----------------TSC----H-HHHHHHHH--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHH-h----------------cCC----H-HHHHHHHH--hCCCcCHHHHHHHHHH
Confidence 8899999999988743 22233321 1 011 1 12334565 4889999999988775
Q ss_pred -hcc
Q 041076 377 -AGL 379 (420)
Q Consensus 377 -iGl 379 (420)
.|.
T Consensus 158 alg~ 161 (233)
T 2h56_A 158 SLGR 161 (233)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 453
No 13
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=94.67 E-value=0.26 Score=48.29 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred hhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHH
Q 041076 222 IFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVR 301 (420)
Q Consensus 222 ly~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~ 301 (420)
|..-|.++.=--|-...+--||.|+-+++-.-.+|..|..-...|.+.| .+++.++..++++|++++.--|.-+ |.+
T Consensus 20 l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~~-ra~ 96 (369)
T 3fsp_A 20 LLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYYS-RVR 96 (369)
T ss_dssp HHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCTH-HHH
T ss_pred HHHHHHHhCCCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChHH-HHH
Confidence 4444444421123233445799999999999999999999999998887 5899999999999999999888876 888
Q ss_pred HHHhhHHHHHH
Q 041076 302 GVVDNSNRILE 312 (420)
Q Consensus 302 AVI~NAraiL~ 312 (420)
.++.=|+.+++
T Consensus 97 ~l~~~a~~~~~ 107 (369)
T 3fsp_A 97 NLHAAVKEVKT 107 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888754
No 14
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=94.63 E-value=0.15 Score=46.66 Aligned_cols=110 Identities=9% Similarity=0.147 Sum_probs=82.6
Q ss_pred CChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcC--hhHHHHHHHHhhHHHHHHH
Q 041076 236 RNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYS--IDMSRVRGVVDNSNRILEV 313 (420)
Q Consensus 236 ~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~g--IIR~KI~AVI~NAraiL~I 313 (420)
..++-.||.|+-++.-.-.+|..+.+-.+.| ++.++..++++|++++..-| .-++|.+.+.+-|+++++.
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999888887 58899999999999998777 6788999999888876431
Q ss_pred HHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 041076 314 KRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGL 379 (420)
Q Consensus 314 ~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQAiGl 379 (420)
. .|++..|- +-+ | +..-++|. .++-|||-|+..+|..+|.
T Consensus 100 ~--~~~l~~~~-~~~---~------------------~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 100 L--KEEIKPLA-DED---Q------------------QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp H--HHHHHHHH-HHC---H------------------HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred h--hhhHHHHh-CCC---H------------------HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 1 12333321 100 0 12334555 6899999999999987676
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=93.56 E-value=0.32 Score=43.46 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHH
Q 041076 242 FELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSN 308 (420)
Q Consensus 242 FEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAr 308 (420)
|+.|+-+++-+=-+|.+|.+--+.|.+.|- +++.+|..++++|+++..--|.-++|-+.++.-|+
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~ 96 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSD 96 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhC
Confidence 899999999999999999988888877775 89999999999999999999998877544444443
No 16
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=92.96 E-value=0.31 Score=45.62 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=91.1
Q ss_pred CChhhhhhhhcCCCcc--cCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhcC
Q 041076 219 SDPIFVAYHDEEWGVP--VRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSG---F-EAETVAKLSDKQMMSISTE 292 (420)
Q Consensus 219 ~dply~~YHD~EWG~P--v~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~g---F-DpekVA~~~EedIerLl~D 292 (420)
.||.+..-.+..-|.. ....+-.||.|+-.+.-.-.||..+.+-+..|.+.|.. | +++.|+..++++|. .
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr----~ 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLH----E 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHH----T
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHH----H
Confidence 4887766666555532 22334579999999999999999999999999999975 5 99999999999863 4
Q ss_pred cChhHHHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHH
Q 041076 293 YSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHS 372 (420)
Q Consensus 293 ~gIIR~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYS 372 (420)
-|+-++|.+.++.=|+++.+ .+.++|+. +... | -+.+-++|.+ ++-|||-|+-.
T Consensus 112 ~Gl~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~~--l~GIG~~TA~~ 165 (232)
T 4b21_A 112 CGFSKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLSK--IKGVKRWTIEM 165 (232)
T ss_dssp TTCCHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHTT--STTCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHHh--CCCcCHHHHHH
Confidence 67788999999998988853 11112222 1111 0 1123345543 88899999988
Q ss_pred HHHHh
Q 041076 373 FMQAA 377 (420)
Q Consensus 373 FMQAi 377 (420)
+|..+
T Consensus 166 ill~a 170 (232)
T 4b21_A 166 YSIFT 170 (232)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76643
No 17
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=92.76 E-value=0.7 Score=42.98 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcC--hhHHHHHHHHhhHHHHHHH
Q 041076 236 RNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYS--IDMSRVRGVVDNSNRILEV 313 (420)
Q Consensus 236 ~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~g--IIR~KI~AVI~NAraiL~I 313 (420)
.+.+-.||.|+..+.-+--+|..|.+--+.+. +.++..++++|++++..-| .-++|-+-+++-|+ +
T Consensus 39 ~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~--- 106 (214)
T 3fhf_A 39 KSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F--- 106 (214)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G---
T ss_pred CCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h---
Confidence 46788999999999999999999998777773 6689999999999999988 88888666665555 2
Q ss_pred HHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 041076 314 KRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGL 379 (420)
Q Consensus 314 ~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQAiGl 379 (420)
|.+-+.+-++. ++ | ..-++|.+ .++-|||-|+..+|..+|.
T Consensus 107 ----~~l~~~~~~~~---~~----------~-------~~re~Ll~-~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 107 ----KNIKDIVESFE---NE----------K-------VAREFLVR-NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp ----CCHHHHHHHSS---SH----------H-------HHHHHHHH-HSTTCCHHHHHHHHHHTTC
T ss_pred ----hHHHHHhcccC---Cc----------H-------HHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 22222211110 10 0 12233431 3788999999999987775
No 18
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=92.57 E-value=0.56 Score=44.93 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=89.3
Q ss_pred CChhhhhhhhcCCCcccCC--hHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHH
Q 041076 219 SDPIFVAYHDEEWGVPVRN--DNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSG-----------F-EAETVAKLSDK 284 (420)
Q Consensus 219 ~dply~~YHD~EWG~Pv~D--Dr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~g-----------F-DpekVA~~~Ee 284 (420)
.||.+..-.+..-|..+.- .+-.||.|+-.+.-.-.||..+.+-...|.+.|.. | +++.|+..+++
T Consensus 94 ~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~ 173 (295)
T 2jhn_A 94 GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVE 173 (295)
T ss_dssp TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHH
Confidence 5777766666666666543 55689999999999999999999999999999864 5 79999998888
Q ss_pred HHHHhhcCcChhHHHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcc
Q 041076 285 QMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRF 364 (420)
Q Consensus 285 dIerLl~D~gIIR~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkF 364 (420)
++ ..-|+-++|.+.++.=|++ |+|+.. .++| . +.+-+.|. .++-
T Consensus 174 ~L----r~~G~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~--~lpG 217 (295)
T 2jhn_A 174 GL----RECGLSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT--SFKG 217 (295)
T ss_dssp HH----HHTTCCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH--TSTT
T ss_pred HH----HHcCCCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh--cCCC
Confidence 76 3456667888777776655 444321 0111 1 22334565 4899
Q ss_pred cchhhHHHHHHH-hc
Q 041076 365 VGPTVVHSFMQA-AG 378 (420)
Q Consensus 365 VGPTtvYSFMQA-iG 378 (420)
|||-|+-.+|.. .|
T Consensus 218 IG~~TA~~ill~~lg 232 (295)
T 2jhn_A 218 IGRWTAELVLSIALG 232 (295)
T ss_dssp CCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHccC
Confidence 999999887764 56
No 19
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=88.65 E-value=1.8 Score=41.54 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=91.1
Q ss_pred CChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 041076 219 SDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSG-----------F-EAETVAKLSDKQM 286 (420)
Q Consensus 219 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~g-----------F-DpekVA~~~EedI 286 (420)
.||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.||..+.+-...+.+.|.. | +|+.|+..+++++
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 4777766666667777755 6799999999999999999999999999999754 5 9999999999999
Q ss_pred HHhhcCcChhHHHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076 287 MSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG 366 (420)
Q Consensus 287 erLl~D~gIIR~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG 366 (420)
.++ |+- .|.+.++.=|+++.+ .+.+++... .. + . +..-++|. .++-||
T Consensus 173 ~~~----g~g-~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----~----------------~-~~~~~~L~--~lpGIG 220 (290)
T 3i0w_A 173 EEC----TAG-FRAKYLKDTVDRIYN---GELNLEYIK-SL----N----------------D-NECHEELK--KFMGVG 220 (290)
T ss_dssp HHT----TCG-GGHHHHHHHHHHHHT---TSSCHHHHH-HS----C----------------H-HHHHHHHT--TSTTCC
T ss_pred HHc----CCc-hHHHHHHHHHHHHHh---CCCCHHHHh-cC----C----------------H-HHHHHHHH--hCCCcC
Confidence 873 332 277777777777642 222343211 10 0 1 12334554 588999
Q ss_pred hhhHHHHHH-Hhccc
Q 041076 367 PTVVHSFMQ-AAGLT 380 (420)
Q Consensus 367 PTtvYSFMQ-AiGlV 380 (420)
|-|+-.+|. +.|..
T Consensus 221 ~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 221 PQVADCIMLFSMQKY 235 (290)
T ss_dssp HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCCC
Confidence 998877765 45653
No 20
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=84.43 E-value=3.2 Score=39.31 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=86.1
Q ss_pred CCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhhcCcChhHHH
Q 041076 231 WGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSG----------F-EAETVAKLSDKQMMSISTEYSIDMSR 299 (420)
Q Consensus 231 WG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~g----------F-DpekVA~~~EedIerLl~D~gIIR~K 299 (420)
.|..+...+-.||.|+-.+.-.-.||..+.+-...|.+.|-. | +++.|+..+++++ ..-|+-+.|
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~r 178 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKR 178 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHH
Confidence 354454445689999999999999999999999999998743 4 7999999999988 345666889
Q ss_pred HHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccchhhHHHHHH-Hhc
Q 041076 300 VRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQ-AAG 378 (420)
Q Consensus 300 I~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVGPTtvYSFMQ-AiG 378 (420)
.+.++.=|+++.+ |.++ ... + .+. +.+-++|. .++-|||-|+-.+|. +.|
T Consensus 179 a~~i~~~A~~~~~-----~~~~--------~~~-----------~--~~~-~~~~~~L~--~lpGIG~~TA~~ill~~lg 229 (282)
T 1mpg_A 179 AEALIHLANAALE-----GTLP--------MTI-----------P--GDV-EQAMKTLQ--TFPGIGRWTANYFALRGWQ 229 (282)
T ss_dssp HHHHHHHHHHHHH-----TCSC--------SSC-----------C--SCH-HHHHHHHT--TSTTCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHc-----CCCC--------ccc-----------c--CCH-HHHHHHHh--cCCCcCHHHHHHHHHHhCC
Confidence 9999988888753 1111 000 0 011 12334554 488999999987766 455
Q ss_pred c-----cccccc
Q 041076 379 L-----TNDHLI 385 (420)
Q Consensus 379 l-----VNDHl~ 385 (420)
. +.||.+
T Consensus 230 ~~d~~pvdd~~~ 241 (282)
T 1mpg_A 230 AKDVFLPDDYLI 241 (282)
T ss_dssp CSSCCCTTCHHH
T ss_pred CCCcCccccHHH
Confidence 2 456653
No 21
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=79.82 E-value=4.4 Score=40.17 Aligned_cols=131 Identities=17% Similarity=0.090 Sum_probs=87.2
Q ss_pred CChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcC------------C-CHHHHhcCCHHH
Q 041076 219 SDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSG------------F-EAETVAKLSDKQ 285 (420)
Q Consensus 219 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~g------------F-DpekVA~~~Eed 285 (420)
.||.+..-.+..-|..+.. +-.||.|+-.+...-.+|..+.+-...|.+.|-. | +++.|+..+.+
T Consensus 131 ~Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~e- 208 (360)
T 2xhi_A 131 VDSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVE- 208 (360)
T ss_dssp HCHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHH-
T ss_pred hCHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHH-
Confidence 4666655566666766654 5789999999999999999999999999998753 3 79999998543
Q ss_pred HHHhhcCcChhHHHHHHHHhhHHHHHHHHHhhCC-HhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcc
Q 041076 286 MMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGS-FEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRF 364 (420)
Q Consensus 286 IerLl~D~gIIR~KI~AVI~NAraiL~I~~E~GS-F~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkF 364 (420)
+.+..-|+ ..|.+.++.=|+++. +++|+ ++ +-... .+| . +..-++|. .++-
T Consensus 209 --e~Lr~~Gl-~~RA~~I~~~A~~i~---~~~~G~~~--L~~l~-------------~~~----~-~~~~~~L~--~LpG 260 (360)
T 2xhi_A 209 --AHLRKLGL-GYRARYVSASARAIL---EEQGGLAW--LQQLR-------------ESS----Y-EEAHKALC--ILPG 260 (360)
T ss_dssp --HHHHHTTC-TTHHHHHHHHHHHHH---HTTCTHHH--HHGGG-------------TSC----H-HHHHHHHT--TSTT
T ss_pred --HHHHHcCC-cHHHHHHHHHHHHHH---hccCCccC--HHHHh-------------cCC----H-HHHHHHHH--hCCC
Confidence 33444666 568888888888774 34432 11 11110 111 1 12334554 5888
Q ss_pred cchhhHHHHHHH-hcc
Q 041076 365 VGPTVVHSFMQA-AGL 379 (420)
Q Consensus 365 VGPTtvYSFMQA-iGl 379 (420)
|||-|+-.+|.. .|.
T Consensus 261 IGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 261 VGTCVADKICLMALDK 276 (360)
T ss_dssp CCHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 999998877765 353
No 22
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=71.73 E-value=6.5 Score=32.42 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
.-|.+.|.+.+.+.+..++|+|++++=-..-=.|+||...|+.=|.
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~ 76 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 76 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 5688899999999999999999998522211148999888875444
No 23
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.17 E-value=15 Score=31.81 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHH
Q 041076 256 WTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRI 310 (420)
Q Consensus 256 W~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NArai 310 (420)
|..-|+ -.-|.+.|.+.|.+.+..++|+|++.+=-..-=.|+||...|.--+..
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhh
Confidence 554332 377999999999999999999999885322222489998888654443
No 24
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=62.14 E-value=11 Score=32.04 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
.-|.+.|.+-+.+.+..+||+|++++=-..-=-|+||...|..=|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 4577888889999999999999998532211248999888874443
No 25
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=62.09 E-value=8.9 Score=30.00 Aligned_cols=43 Identities=12% Similarity=0.408 Sum_probs=30.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
+.|.+.| .||| .+.|+.++++|+.+|=-..-=.|+||...|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5677777 7994 99999999999987532222257888765543
No 26
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=57.50 E-value=16 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.363 Sum_probs=31.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHH
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~NAr 308 (420)
+.|.+.| .+|| .+.|..++++|+.+|=-..-=.|+||...|..-+
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~ 67 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMR 67 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHH
Confidence 4566677 5788 8999999999998642221115789987776544
No 27
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=55.71 E-value=26 Score=27.63 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHH
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~NAr 308 (420)
+.|.+.| .+|| .+.+..++++|+.+|=-..-=.|+||...|..-+
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 4566666 4688 8999999999997653322225888877766543
No 28
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=53.86 E-value=19 Score=27.93 Aligned_cols=46 Identities=9% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHh--cCC-CHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHHH
Q 041076 265 GFRDAF--SGF-EAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRI 310 (420)
Q Consensus 265 afReAF--~gF-DpekVA~~~EedIerLl~D~gIIR~KI~AVI~NArai 310 (420)
.|.+.| .+| |.+.+..++++|+.+|=-..--.|+||...|..-+.-
T Consensus 25 ~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 25 QYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 455555 467 7899999999999864222112488998777765543
No 29
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=53.09 E-value=14 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCcccchhhHHHHHHHhccc
Q 041076 350 SESISKDMVRRGFRFVGPTVVHSFMQAAGLT 380 (420)
Q Consensus 350 S~~LSKdLKKrGFkFVGPTtvYSFMQAiGlV 380 (420)
.+.|++.|+++|+ -|+..|||-.|...|++
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCE
Confidence 3568889999986 58999999999999987
No 30
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.10 E-value=10 Score=31.16 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
+.|.+.| +||| .+.|..++++|+.+|=-..-=.|+||...|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5667777 4688 79999999999987722222247888766643
No 31
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.79 E-value=23 Score=28.67 Aligned_cols=42 Identities=17% Similarity=0.480 Sum_probs=28.3
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 265 GFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 265 afReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
.|.+.| .+|| .+.+..++++|+.+|=-..-=.|+||...|..
T Consensus 36 ~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~ 80 (99)
T 2eao_A 36 QYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHS 80 (99)
T ss_dssp GGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 344445 4788 89999999999987522221147898866654
No 32
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=47.04 E-value=7.8 Score=31.49 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=34.4
Q ss_pred ccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHH
Q 041076 252 VGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRG 302 (420)
Q Consensus 252 AGLSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~A 302 (420)
.|..|..--..++.|+++|.-||. .=-..+-+++..+|...++-..-+..
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~ 52 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGR 52 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHH
Confidence 456676555677889999999998 65667888888888877654333333
No 33
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.77 E-value=19 Score=28.52 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
+.|.+.| .+|| .+.|..++++|+.+|=-..-=.|+||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 3455555 3688 89999999999876422221157899877765443
No 34
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=45.15 E-value=32 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=30.5
Q ss_pred HHHHHHh--cCC-CHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 264 QGFRDAF--SGF-EAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 264 eafReAF--~gF-DpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
+.|.+.| .+| |.+.|..++++|+.+|=-..-=.|.||...|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 4555666 457 789999999999876422111147899877766443
No 35
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=44.57 E-value=26 Score=28.17 Aligned_cols=42 Identities=5% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVD 305 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~ 305 (420)
+.|.+.| .+|| .+.|..++++|+.+|=-..-=.|+||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence 5677777 4674 8999999999988642221114788876654
No 36
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=44.42 E-value=22 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcCh----hHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSI----DMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gI----IR~KI~AVI~N 306 (420)
+.|.+.| .+|| .+.|..++++|+.+| || .|+||...|..
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~l----GI~~~GHrkkIl~ai~~ 73 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKI----GISPTGHRRRILKQLQI 73 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHH----TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHC----CCCCHhHHHHHHHHHHH
Confidence 3455555 3674 789999999998875 55 47898766654
No 37
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=43.18 E-value=50 Score=25.55 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcCh-hHHHHHHHHhhHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSI-DMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gI-IR~KI~AVI~NAr 308 (420)
+.|.+ .++|.+.+..++++|+.+|=-. + .|.||-..|..=+
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~--~G~RkkIl~ai~~~~ 60 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP--LGPREKILGAVRRRR 60 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC--HHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC--cchHHHHHHHHHHHH
Confidence 56665 5789999999999998766333 2 4889887775433
No 38
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=42.90 E-value=28 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHH
Q 041076 264 QGFRDAFS--GF-EAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF~--gF-DpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAr 308 (420)
+.|.+.|. +| |.+.+..++++|+.+|=-..--.|+||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 35777774 54 78999999999998852211115889987776544
No 39
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=42.53 E-value=36 Score=27.46 Aligned_cols=39 Identities=23% Similarity=0.611 Sum_probs=29.0
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcCh----hHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSI----DMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gI----IR~KI~AVI~N 306 (420)
+.|.+.| .+|| .+.|..++++|+.+| || .|+||-..|..
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~l----GIt~~GHRkkIL~ai~~ 83 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSL----GITLVGHQKKIMSSIQT 83 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHC----CCCCHHHHHHHHHHHHH
Confidence 3455555 5788 999999999998765 65 37888776654
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=41.97 E-value=35 Score=31.39 Aligned_cols=41 Identities=10% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcCh---hHHHHHHHHhhHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSI---DMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gI---IR~KI~AVI~NAr 308 (420)
.-|.+.|.+.+.+.+..+||+|++++ || -|+||...|..=|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~----GVT~GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSV----GVTKGASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHT----TCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHC----CCchHHHHHHHHHHHHHH
Confidence 45888999999999999999999996 55 4788877665433
No 41
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=40.88 E-value=32 Score=27.53 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcCh----hHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSI----DMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gI----IR~KI~AVI~N 306 (420)
+.|.+.| .+|| .+.|..++++|+.+| || .|+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~L----GIt~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRI----GVRLPGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHC----CCCCHHHHHHHHHHHHH
Confidence 4455555 4688 899999999999865 55 37888776643
No 42
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=40.12 E-value=5.7 Score=30.55 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=31.2
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHH
Q 041076 261 KKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGV 303 (420)
Q Consensus 261 kKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AV 303 (420)
..++.|+++|.-||.+.=-..+-+++..+|..-++-...+..+
T Consensus 6 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i 48 (92)
T 1fi6_A 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHI 48 (92)
T ss_dssp HHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 3467899999999998777778888888887666543333333
No 43
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=40.08 E-value=27 Score=27.72 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=27.4
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcCh----hHHHHHHHHh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSI----DMSRVRGVVD 305 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gI----IR~KI~AVI~ 305 (420)
+.|.+.| .+|| .+.|..++++|+.+| || .|+||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~l----GIt~~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQM----GITLPGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHC----CCCCHHHHHHHHHHHH
Confidence 3445555 4788 899999999998765 55 3778876553
No 44
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=38.05 E-value=31 Score=29.99 Aligned_cols=43 Identities=12% Similarity=0.333 Sum_probs=29.9
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 264 QGFRDAFS--GFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF~--gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
+.|.+.|. |||.+.+..++++|+.+|=-..-..|+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34555664 89999999999999986522222257888766654
No 45
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=36.45 E-value=40 Score=27.69 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=28.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
+.|.+.| .+|| .+.+..++++|+.+|=-..-=.|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 3455555 4788 89999999999887522211147888766654
No 46
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.99 E-value=65 Score=24.82 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
+.|++ ++.|-+.+..++++|+.+|=-..--.|.||...|..-+.
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCA 75 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 44544 567889999999999987543333357888877665443
No 47
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=34.90 E-value=61 Score=28.06 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 265 GFRDAF--SGFE-AETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 265 afReAF--~gFD-pekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
.|.+.| .||| .+.|..++++|+.+|=-..--.|.||-..|..-+.
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~ 140 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE 140 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 344444 5898 89999999999865422222247888877754433
No 48
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.80 E-value=6.1 Score=30.68 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=33.1
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHH
Q 041076 261 KKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVV 304 (420)
Q Consensus 261 kKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI 304 (420)
..++.|+++|..||.+.=-..+-+++..+|..-++-...++.++
T Consensus 7 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 45678999999999888778888999998887765444444333
No 49
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=32.43 E-value=84 Score=26.41 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCCcCccCCCChhhhhhhhcC-----C-Cccc--CChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcC
Q 041076 210 KRCSFITAYSDPIFVAYHDEE-----W-GVPV--RNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKL 281 (420)
Q Consensus 210 ~RC~W~~~~~dply~~YHD~E-----W-G~Pv--~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~ 281 (420)
..|+||. .-.+.+..+-+.. | ..|+ +++-.....+.+...+.|.-|..... -|+..|.. .-.-.
T Consensus 32 ~~Cp~C~-~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~---lf~~~~~~----~~~~~ 103 (195)
T 2znm_A 32 YFCVHCH-HFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPA---VFKAVYEQ----KIRLE 103 (195)
T ss_dssp TTSCCTT-SSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHC----SSCTT
T ss_pred CCChhHH-HHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHH---HHHHHHHh----CCCCC
Confidence 5699996 3456554443321 0 1233 33333333333444445666655422 23333321 11224
Q ss_pred CHHHHHHhhcCc-ChhHHHHHHHHhhH
Q 041076 282 SDKQMMSISTEY-SIDMSRVRGVVDNS 307 (420)
Q Consensus 282 ~EedIerLl~D~-gIIR~KI~AVI~NA 307 (420)
+++.|.+++.+- ||...++.+.+++.
T Consensus 104 ~~~~l~~~a~~~~Gld~~~~~~~~~~~ 130 (195)
T 2znm_A 104 NRSVAGKWALSQKGFDGKKLMRAYDSP 130 (195)
T ss_dssp SHHHHHHHHHTCSSSCHHHHHHHHTSH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHhcCH
Confidence 667788888887 88666665555443
No 50
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=31.66 E-value=10 Score=32.91 Aligned_cols=48 Identities=8% Similarity=0.208 Sum_probs=33.8
Q ss_pred ccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHH
Q 041076 254 SDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGV 303 (420)
Q Consensus 254 LSW~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AV 303 (420)
..|.+ -..++.|+++|.-|| +.=-.++-+++..+|...++-..-|..+
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I 89 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKI 89 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHH
Confidence 56764 467788999999999 7666678888888887766544333333
No 51
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=30.01 E-value=1.2e+02 Score=22.68 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHHHHh--cCCCHHHHhcCCHHHHHHhhcCcCh----hHHHHHHHHhhHH
Q 041076 264 QGFRDAF--SGFEAETVAKLSDKQMMSISTEYSI----DMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF--~gFDpekVA~~~EedIerLl~D~gI----IR~KI~AVI~NAr 308 (420)
+.|.+.| ++.|-+.+..++++|+.+ -|| .|.||...|..-|
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~----lGI~~~g~r~kil~~i~~L~ 68 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKA----LGMTSSQDRALVKKKLKEMK 68 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHT----TTCCCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHH----cCCCCHHHHHHHHHHHHHHH
Confidence 4566666 456779999999999654 454 4788887776644
No 52
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=29.95 E-value=78 Score=24.06 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHH
Q 041076 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSN 308 (420)
Q Consensus 264 eafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAr 308 (420)
+.|++ +++|-+.+..++++|+.+|=-..--.|.||...|..-+
T Consensus 28 ~~F~~--~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~ 70 (80)
T 3bs5_B 28 KNFER--EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLC 70 (80)
T ss_dssp HHHHH--HTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 44544 56888999999999997643222224788876665533
No 53
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=29.91 E-value=17 Score=24.59 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=9.5
Q ss_pred HhcCCHHHHHHhhcC
Q 041076 278 VAKLSDKQMMSISTE 292 (420)
Q Consensus 278 VA~~~EedIerLl~D 292 (420)
|..|+|++||+|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 668999999999864
No 54
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=28.84 E-value=13 Score=29.94 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=33.5
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHH
Q 041076 256 WTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGV 303 (420)
Q Consensus 256 W~tVLkKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~AV 303 (420)
|.+--..++.|+++|.-||.+.=-.++-+++..+|...++....|..+
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i 53 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASI 53 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHH
Confidence 443334567899999999988766778888888888555544444433
No 55
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.64 E-value=17 Score=28.64 Aligned_cols=42 Identities=5% Similarity=0.029 Sum_probs=32.0
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChhHHHHHH
Q 041076 261 KKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRG 302 (420)
Q Consensus 261 kKReafReAF~gFDpekVA~~~EedIerLl~D~gIIR~KI~A 302 (420)
..++.|+++|.-||.+.=-..+-+++.++|...++-..-+..
T Consensus 8 ~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~ 49 (99)
T 1qjt_A 8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGK 49 (99)
T ss_dssp TTCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHH
T ss_pred hhHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHH
Confidence 345779999999999987788889999998877764333333
No 56
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=26.07 E-value=23 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHcCCcccchhhHHH
Q 041076 347 TSKSESISKDMVRRGFRFVGPTVVHS 372 (420)
Q Consensus 347 T~lS~~LSKdLKKrGFkFVGPTtvYS 372 (420)
.++++.+.+....+||.|+||+.|..
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~f 108 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVRF 108 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEEE
Confidence 46778888888999999999998863
No 57
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=24.92 E-value=30 Score=28.51 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=29.1
Q ss_pred hccccHHHHHHhHH-HHHHHhcCCCHHHHhcCCHHHH-HHhhcCcChhH
Q 041076 251 QVGSDWTSILKKRQ-GFRDAFSGFEAETVAKLSDKQM-MSISTEYSIDM 297 (420)
Q Consensus 251 QAGLSW~tVLkKRe-afReAF~gFDpekVA~~~EedI-erLl~D~gIIR 297 (420)
+.|+.|..+++++. .|++.-. + ...++++++ +-|+++|.+|+
T Consensus 48 ~~~~~~~~l~n~~~~~~k~l~~--~---~~~ls~~~~~~~m~~~p~Lik 91 (120)
T 3l78_A 48 YTENGTEDIISTRSKVFQKLDI--D---VDELSVSELINLISKNPSLLR 91 (120)
T ss_dssp HCSSTHHHHBCTTCHHHHHTTC--C---GGGCCHHHHHHHHHHCGGGBC
T ss_pred hcCCCHHHhhcCCcHHHHHcCC--C---cccCCHHHHHHHHHhCcccee
Confidence 57999999999885 4555432 2 256788876 55566788774
No 58
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=24.67 E-value=50 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCc----ccchhhHHHHHHHhccccc
Q 041076 349 KSESISKDMVRRGFR----FVGPTVVHSFMQAAGLTND 382 (420)
Q Consensus 349 lS~~LSKdLKKrGFk----FVGPTtvYSFMQAiGlVND 382 (420)
+.+ +-+.|+++|.+ ..|++++.+||++ |+|+.
T Consensus 176 l~~-~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVDE 211 (270)
T 2p4g_A 176 LKI-AFDALHARRLKKISIEGGPSVYRQALSL-GIVDR 211 (270)
T ss_dssp HHH-HHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCCE
T ss_pred HHH-HHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCeE
Confidence 444 55789999998 5699999999876 88875
No 59
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=24.54 E-value=77 Score=24.14 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhhcCcChhHHHHHHHHhhHHH
Q 041076 266 FRDAF--SGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNR 309 (420)
Q Consensus 266 fReAF--~gFDpekVA~~~EedIerLl~D~gIIR~KI~AVI~NAra 309 (420)
|.+.| .++|-..+..++++|+.+|=-..--.|.||...|..-+.
T Consensus 22 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 22 HRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDG 67 (76)
T ss_dssp GHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence 45555 467778999999999864322211247888877766443
No 60
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=23.98 E-value=50 Score=28.18 Aligned_cols=31 Identities=10% Similarity=0.388 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 041076 349 KSESISKDMVRRGFRFVGPTVVHSFMQAAGL 379 (420)
Q Consensus 349 lS~~LSKdLKKrGFkFVGPTtvYSFMQAiGl 379 (420)
....+++.|...||+++.....+.||+..|+
T Consensus 38 ~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi 68 (143)
T 2yvq_A 38 RFLGVAEQLHNEGFKLFATEATSDWLNANNV 68 (143)
T ss_dssp HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCEEEECchHHHHHHHcCC
Confidence 3455899999999999987788999999885
No 61
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=22.04 E-value=44 Score=25.91 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=33.2
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcChh--HHHHHHHHhh
Q 041076 262 KRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSID--MSRVRGVVDN 306 (420)
Q Consensus 262 KReafReAF~gFDpekVA~~~EedIerLl~D~gII--R~KI~AVI~N 306 (420)
....++++|..||.+.=-.++-+++..+|..-++. ...|..++..
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 51 (143)
T 3j04_B 5 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51 (143)
T ss_dssp HHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 35678999999999888888999998888776653 3445554443
No 62
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=21.98 E-value=63 Score=27.72 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 265 GFRDAF--SGFEA-ETVA--KLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 265 afReAF--~gFDp-ekVA--~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
.|.+.| .|||- +.|+ .++++|+.+|=-..--.|.||...|..
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 455666 57776 6676 999999986644433468899766654
No 63
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=21.25 E-value=65 Score=26.58 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=28.2
Q ss_pred HHHHHHh--cCCC-HHHHh--cCCHHHHHHhhcCcChhHHHHHHHHhh
Q 041076 264 QGFRDAF--SGFE-AETVA--KLSDKQMMSISTEYSIDMSRVRGVVDN 306 (420)
Q Consensus 264 eafReAF--~gFD-pekVA--~~~EedIerLl~D~gIIR~KI~AVI~N 306 (420)
+.|.+.| .+|| .+.|+ .++++|+.+|=-..-=.|+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5667777 4566 67888 899999876522211147888766654
Done!