BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041077
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 31/246 (12%)
Query: 1 LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYA--KQNGSDGGYG 58
+E+L A WG INHGI +++V++ ++FF+L +EEK+KYA + G GYG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 59 ----NDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKA 100
N+ L W D F PE++R L WP+ P + + +FKA
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 101 FARSINLEENCFQDMFG--EQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKE 158
+ + LE + + G E+ + + +YP C +P L LGV HTD S LT +L +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM- 244
Query: 159 VEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFC 210
V GLQ + +W +P++ V I+SNG +KS +HR + N E+ R+S AVFC
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304
Query: 211 CPNPEK 216
P +K
Sbjct: 305 EPPKDK 310
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 31/246 (12%)
Query: 1 LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYA--KQNGSDGGYG 58
+E+L A WG INHGI +++V++ ++FF+L +EEK+KYA + G GYG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 59 ----NDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKA 100
N+ L W D F PE++R L WP+ P + + +FKA
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 101 FARSINLEENCFQDMFG--EQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKE 158
+ + LE + + G E+ + + +YP C +P L LGV HTD S LT +L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM- 245
Query: 159 VEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFC 210
V GLQ + +W +P++ V I+SNG +KS +HR + N E+ R+S AVFC
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 211 CPNPEK 216
P +K
Sbjct: 306 EPPKDK 311
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 31/246 (12%)
Query: 1 LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYA--KQNGSDGGYG 58
+E+L A WG INHGI ++V++ ++FF+L +EEK+KYA + G GYG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 59 ----NDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKA 100
N+ L W D F PE++R L WP+ P + + +FKA
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 101 FARSINLEENCFQDMFG--EQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKE 158
+ + LE + + G E+ + + +YP C +P L LGV HTD S LT +L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX- 245
Query: 159 VEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFC 210
V GLQ + +W +P++ V I+SNG +KS +HR + N E+ R+S AVFC
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 211 CPNPEK 216
P +K
Sbjct: 306 EPPKDK 311
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 23/242 (9%)
Query: 2 EKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDI 61
E + A WG F+ +NHGI D V + TK + E++ K + + G ++
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEV 81
Query: 62 HPTLNWSDRLFLALIP------------EDRRQLKFWPENPESFSQIIFKAFARSINLEE 109
+W FL +P E R + + + E ++ + ++ LE+
Sbjct: 82 -TDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEK 140
Query: 110 NCFQDMF-GEQTFMFG-RFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKD 167
++ F G + FG + YPPC +P+L+ G+ HTD G+ +L D +V GLQ LKD
Sbjct: 141 GYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD 200
Query: 168 DQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIE 219
QW VP + V +++NG +KS HRV+ + R S+A F P + I
Sbjct: 201 GQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY 260
Query: 220 PG 221
P
Sbjct: 261 PA 262
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 2 EKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGY---- 57
++LG + +G ++ ++ A +D + K FFALP+E K++YA G GY
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 58 ------------------GNDIHPT----LNWSDRLFLALIPEDRRQLKFWPENPESFSQ 95
G D+ P + +D ++ A IP + + + + +
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 96 IIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLP 155
+ +A A + LE + F+ + + R YPP + + H D + +T+LL
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVL-RLLHYPPIPKDATGVRAGAHGDINTITLLLG 202
Query: 156 DKEVEGLQFL-KDDQWYRVPVIPEAFVI--------MSNGIFKSPVHRVVTNSERERMSV 206
+E GL+ L +D QW + P VI ++N + S VHRVV N ER V
Sbjct: 203 AEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGV 260
Query: 207 AVFCCP 212
+ P
Sbjct: 261 PRYSTP 266
>pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
Length = 201
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 136 NLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEA 179
N+ +G PH++ + L VLL D+ +EG K+ + ++ ++P+A
Sbjct: 124 NVAIGNQPHSEVAALAVLL-DRLLEGKGLKKEFKGAKIKIVPQA 166
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 52 GSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKA 100
G GGY +DI L W+ +A IPE+R K + S Q + A
Sbjct: 138 GRSGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNA 186
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 55 GGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQD 114
GYG + + L LF L P R ++ EN +S + I + + N + D
Sbjct: 228 AGYGYETYKLL-CEYHLFQPLFPTITR---YFTENGDSPMERIIEQVLK--NTDTRIHND 281
Query: 115 MFGEQTFMFGRFFWYP 130
M F+F FWYP
Sbjct: 282 MRVNPAFLFAAMFWYP 297
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 55 GGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQD 114
GYG + + L LF L P R ++ EN +S + I + + N + D
Sbjct: 229 AGYGYETYKLL-CEYHLFQPLFPTITR---YFTENGDSPMERIIEQVLK--NTDTRIHND 282
Query: 115 MFGEQTFMFGRFFWYP 130
M F+F FWYP
Sbjct: 283 MRVNPAFLFAAMFWYP 298
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 55 GGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQD 114
GYG + + L LF L P R ++ EN +S + I + + N + D
Sbjct: 229 AGYGYETYKLL-CEYHLFQPLFPTITR---YFTENGDSPMERIIEQVLK--NTDTRIHND 282
Query: 115 MFGEQTFMFGRFFWYP 130
M F+F FWYP
Sbjct: 283 MRVNPAFLFAAMFWYP 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,276,478
Number of Sequences: 62578
Number of extensions: 359495
Number of successful extensions: 709
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 10
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)