BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041078
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
From Gallus Gallus As A Maltose Binding Protein Fusion
Length = 658
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 159
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 128 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 176
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3PY7|A Chain A, Crystal Structure Of Full-length Bovine Papillomavirus
Oncoprotein E6 In Complex With Ld1 Motif Of Paxillin At
2.3a Resolution
Length = 523
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|4B3N|A Chain A, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
pdb|4B3N|B Chain B, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
Length = 602
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 127 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 175
>pdb|3G7V|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|B Chain B, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|C Chain C, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|D Chain D, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
Length = 408
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 91 TTPSQKGSDLEILVEVVAQHYYGDKKKWNFIAITEATNLTLEAVQSGKPGRNQRHDYLQN 150
TTPS K SD A H + D+KK EA ++A + G P + D + N
Sbjct: 21 TTPSNKLSDY------YASHVF-DRKKMQEYLPKEAYKAVVDATEKGTPISREMADLIAN 73
Query: 151 NYGHNSW 157
G SW
Sbjct: 74 --GMKSW 78
>pdb|3G7W|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Residues 1 To
22 Fused To Maltose Binding Protein
Length = 393
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3PUZ|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
Length = 370
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3SEV|A Chain A, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|C Chain C, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|E Chain E, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
Length = 372
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3PGF|A Chain A, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 398
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 144 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 192
>pdb|3SER|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
pdb|3SER|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
Length = 372
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1NL5|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1PEB|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVL--FIRKY 240
L I ++ + PP E P L K L AKG +F + E F T PLI + KY
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLIAADGGYAFKY 171
Query: 241 GIRSWIPWFLSLAVDFTGLGFLSLATRSRHVGKE 274
G + + A GL FL +++H+ +
Sbjct: 172 GDIKDV--GVDNAGAKAGLTFLVDLIKNKHMNAD 203
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3PUY|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUV|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
Length = 378
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|2V93|A Chain A, Equillibrium Mixture Of Open And Partially-Closed Species
In The Apo State Of Maltodextrin-Binding Protein By
Paramagnetic Relaxation Enhancement Nmr
Length = 370
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 109 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 157
>pdb|1YTV|A Chain A, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
pdb|1YTV|B Chain B, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
Length = 366
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|2H25|A Chain A, Solution Structure Of Maltose Binding Protein Complexed
With Beta-Cyclodextrin
pdb|2KLF|A Chain A, Pere Nmr Structure Of Maltodextrin-Binding Protein
Length = 370
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 159
>pdb|1MDQ|A Chain A, Refined Structures Of Two Insertion(slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 371
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3RUM|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
pdb|3VFJ|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Mbp As A Ligand Carrier
Length = 378
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|2D21|A Chain A, Nmr Structure Of Stereo-Array Isotope Labelled (Sail)
Maltodextrin-Binding Protein (Mbp)
pdb|1ANF|A Chain A, Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB|A Chain A, Refined 1.8 Angstroms Structure Reveals The Mechanism Of
Binding Of A Cyclic Sugar, Beta-Cyclodextrin, To The
Maltodextrin Binding Protein
pdb|1OMP|A Chain A, Crystallographic Evidence Of A Large Ligand-Induced Hinge-
Twist Motion Between The Two Domains Of The
Maltodextrin- Binding Protein Involved In Active
Transport And Chemotaxis
pdb|3MBP|A Chain A, Maltodextrin-Binding Protein With Bound Maltotriose
pdb|4MBP|A Chain A, Maltodextrin Binding Protein With Bound Maltetrose
pdb|2R6G|E Chain E, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 370
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1LAX|A Chain A, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
pdb|1LAX|C Chain C, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
Length = 370
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1N3W|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1N3X|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVL--FIRKY 240
L I ++ + PP E P L K L AKG +F + E F T PLI + KY
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLIAADGGYAFKY 171
Query: 241 GIRSWIPWFLSLAVDF----TGLGFLSLATRSRHVGKE 274
G + VD GL FL +++H+ +
Sbjct: 172 GD------IKDVGVDNAGAKAGLTFLVDLIKNKHMNAD 203
>pdb|2OK2|A Chain A, Muts C-Terminal Domain Fused To Maltose Binding Protein
pdb|2OK2|B Chain B, Muts C-Terminal Domain Fused To Maltose Binding Protein
Length = 402
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3RLF|E Chain E, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 380
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3IOR|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOT|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOU|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOV|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOW|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IO4|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO6|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
Length = 449
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3Q27|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (32-57) Fused
To Maltose Binding Protein (Mbp)
Length = 397
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3HST|A Chain A, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|C Chain C, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 387
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|4GIZ|A Chain A, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
pdb|4GIZ|B Chain B, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
Length = 382
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|4EXK|A Chain A, A Chimera Protein Containing Mbp Fused To The C-Terminal
Domain Of The Uncharacterized Protein Stm14_2015 From
Salmonella Enterica
Length = 487
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 117 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 165
>pdb|3Q25|A Chain A, Crystal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|C Chain C, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
Length = 390
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1MPB|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg)
pdb|1MPC|A Chain A, Maltodextrin-binding Protein (maltose-binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (trp-230-arg)
pdb|1MPD|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg), Complexed With Maltose
Length = 370
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 161
>pdb|3HPI|A Chain A, Crystal Structure Of Maltose-Binding Protein Mutant With
Bound Sucrose
pdb|3HPI|B Chain B, Crystal Structure Of Maltose-Binding Protein Mutant With
Bound Sucrose
pdb|3KJT|A Chain A, Stimulation Of The Maltose Transporter By A Mutant Sucrose
B Protein Gives Insights Into Abc Transporter Coupling
Length = 372
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 163
>pdb|3Q28|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (58-79) Fused
To Maltose Binding Protein (Mbp)
Length = 393
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|3Q26|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (10-42) Fused
To Maltose Binding Protein (Mbp)
Length = 404
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 162
>pdb|1SVX|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 395
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 128 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 176
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 159
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 149 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 197
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 149 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 197
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 183 LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLI 232
L I ++ + PP E P L K L AKG +F + E F T PLI
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLI 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,938,877
Number of Sequences: 62578
Number of extensions: 346783
Number of successful extensions: 918
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 82
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)