BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041078
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S8S1|PEX16_ARATH Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16
PE=1 SV=1
Length = 367
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 179/284 (63%), Gaps = 53/284 (18%)
Query: 32 MDAYKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAINEHIIET 91
M+AYK+WV RNR+YV S S ANGLTWLLPE FS SEIGPEAVT FLGI + INEHIIE
Sbjct: 1 MEAYKQWVWRNREYVQSFGSFANGLTWLLPEKFSASEIGPEAVTAFLGIFSTINEHIIEN 60
Query: 92 TPSQKG--------------------SDLEILVEVVAQHYYGDKKKWNFIAITEA----- 126
P+ +G DLE +VEV A+H+YGD KKWN+I +TEA
Sbjct: 61 APTPRGHVGSSGNDPSLSYPLLIAILKDLETVVEVAAEHFYGD-KKWNYIILTEAMKAVI 119
Query: 127 -------------------------TNLTLEAVQSGKPGRNQRHDYLQNNYGHNSWNLEG 161
+N + ++G GRN L N HN WNLEG
Sbjct: 120 RLALFRNSGYKMLLQGGETPNEEKDSNQSESQNRAGNSGRNLGPHGLGNQNHHNPWNLEG 179
Query: 162 RALSALNRFGENAR--TASEPVWLQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALF 219
RA+SAL+ FG+NAR T+S P W +RIQHQQA++EPP R T+S+LL+ KG GALF
Sbjct: 180 RAMSALSSFGQNARTTTSSTPGWSRRIQHQQAVIEPPMIKERRRTMSELLTEKGVNGALF 239
Query: 220 VMGEVLFITRPLIYVLFIRKYGIRSWIPWFLSLAVDFTGLGFLS 263
+GEVL+ITRPLIYVLFIRKYG+RSWIPW +SL+VD G+G L+
Sbjct: 240 AIGEVLYITRPLIYVLFIRKYGVRSWIPWAISLSVDTLGMGLLA 283
>sp|B0JYZ2|PEX16_XENTR Peroxisomal membrane protein PEX16 OS=Xenopus tropicalis GN=pex16
PE=2 SV=1
Length = 340
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 39/268 (14%)
Query: 26 DRVCKAMDAYKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAIN 85
D++ YK +V +N LES L++L+ F++S E V + ++ +N
Sbjct: 7 DKLQDLSQKYKDYVIQNPTGATQLESAVRMLSYLIAGRFADSHELSELVYSASNLLALLN 66
Query: 86 EHIIE----TTPSQKGS------------DLEILVEVVAQHYYGDKKKWNFIAITEATNL 129
+ I+ P +GS LE+ +E+ A +GD+ +W I I +
Sbjct: 67 DGILRKELLAPPPTEGSRRRLLTWLGVLESLEVFIEIGAARAWGDRTRWAAILIIQLLKA 126
Query: 130 TLE---------AVQSGKP----GRNQRHDYLQNNYGHNSWNLEGRALSALNRFGENART 176
L +QS P R + ++N S GR S R +++ +
Sbjct: 127 CLRIVLLFWYRAGIQSSPPVTPLDREGILNQAEDNSNSGSSCFVGRRSSRAVRSLDDSAS 186
Query: 177 ASEPVWLQRIQHQQAIMEPPAPMVERPTLSKLLSAKGT-IGALFVMGEVLFITRPLIYVL 235
+ W H +R T G+ +G L + E + I RP+ ++L
Sbjct: 187 SHRRFWRSPQIHDGK---------QRNTGETESDKDGSELGTLGTLAEAIHILRPITHLL 237
Query: 236 FIRKYGIRSWIPWFLSLAVDFTGLGFLS 263
+ +G +SW PW ++ A+D T + LS
Sbjct: 238 SLATWGQKSWKPWMVAAALDITSISLLS 265
>sp|Q6INN0|PEX16_XENLA Peroxisomal membrane protein PEX16 OS=Xenopus laevis GN=pex16 PE=2
SV=1
Length = 340
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 37/267 (13%)
Query: 26 DRVCKAMDAYKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAIN 85
D++ YK +V +N LES L++L+ F++S E V + ++ +N
Sbjct: 7 DKLRDLSQKYKEYVIQNPTGATQLESGVRMLSYLIAGRFADSHELSELVYSSSNLLALLN 66
Query: 86 EHIIE----TTPSQKGS------------DLEILVEVVAQHYYGDKKKWNFIAITEATNL 129
+ I+ T P +GS LE+ +E+ A +G++ +W I I +
Sbjct: 67 DGILRKELLTPPPTEGSRRRLLTWLGVLESLEVFIEIGAARAWGERSRWAAILIIQLLKA 126
Query: 130 TLE---------AVQSGKP----GRNQRHDYLQNNYGHNSWNLEGRALSALNRFGENART 176
L +QS P R + ++N +S GR S R ++ +
Sbjct: 127 CLRIVLLFWYRVGIQSSPPVTPLDREGILNQAEDNSKSSSSCFVGRRSSRAVRSLNDSAS 186
Query: 177 ASEPVWLQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVLF 236
+ W I E K S GT+G L E + I RP+ ++L
Sbjct: 187 SHRRFW-----RSPQIHEGKQQKNGETENDKEGSELGTLGTL---AEAIHILRPITHLLS 238
Query: 237 IRKYGIRSWIPWFLSLAVDFTGLGFLS 263
+ G +SW PW ++ A+D T + LS
Sbjct: 239 LAACGQKSWKPWMMAAALDITSISLLS 265
>sp|Q91XC9|PEX16_MOUSE Peroxisomal membrane protein PEX16 OS=Mus musculus GN=Pex16 PE=2
SV=2
Length = 336
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 54/267 (20%)
Query: 35 YKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAINEHIIE---- 90
Y+ +V R+ LE+ GL++LL FS+S E V + ++ +N+ I+
Sbjct: 11 YQEYVTRHPAATAQLETAVRGLSYLLAGRFSDSHELSELVYSASNLLVLLNDGILRKELR 70
Query: 91 ----TTPSQKG--------SDLEILVEVVAQHYYGDKKKWNFIAITEATNLTLE------ 132
+ SQ+ +E+ +E+ A +G+ +W IA+ + L
Sbjct: 71 KKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLIW 130
Query: 133 ---AVQSGKP----GRNQRHDYLQ--NNYGHNSWNLEGRALSALNRFGENARTASEPVW- 182
+Q+ P R + L +N G + G+ + R +N+ + W
Sbjct: 131 FKAGIQTSPPIVPLDRETQAQPLDGDHNPGSQEPSYVGKRSHRVVRTLQNSPSLHSRYWG 190
Query: 183 ------LQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVLF 236
+++ Q Q+ + PP P+ G + E L+I RPL+++L
Sbjct: 191 APQQREIRQKQQQEELSTPPTPL----------------GLQETIAESLYIARPLLHLLS 234
Query: 237 IRKYGIRSWIPWFLSLAVDFTGLGFLS 263
+ +G RSW PW LS VD T L LS
Sbjct: 235 LGLWGQRSWTPWLLSGVVDMTSLSLLS 261
>sp|Q4QRH7|PEX16_DANRE Peroxisomal membrane protein PEX16 OS=Danio rerio GN=pex16 PE=2
SV=1
Length = 335
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 31/265 (11%)
Query: 25 LDRVCKAMDAYKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAI 84
++++ + + Y+ +VR + LES L++L+ FS+S E V + ++ +
Sbjct: 1 MEKLTRVFERYQEYVRTSPAAASHLESTVRALSYLIAGRFSDSHEISELVYSASNLLVLL 60
Query: 85 NEHIIE-----TTPSQKGSD-----------LEILVEVVAQHYYGDKKKWNFIAITEATN 128
N+ I+ T P +E+ VE+ A +GD +W I + +
Sbjct: 61 NDGILRKNLSRTLPMSISQQKLLTWLSVLEYVEVFVEMAAAKMWGDAGRWLVIVLIQIAK 120
Query: 129 LTL---------EAVQSGKPGRNQRHDYLQNNYGHNSWNLEGRALSALNRFGENART-AS 178
L +Q+ P D + +N + + R G R S
Sbjct: 121 AVLRCLLLFWYKSGIQTSPPIIPLDRDSQLCSQDNNEEEDDEDSSFVGQRSGRVVRPLGS 180
Query: 179 EPVWLQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVLFIR 238
P R+ P V R +L S+ +G + E L+I RPL+++ +
Sbjct: 181 APSLQSRLWGL-----PRKKKVSRNQEEELHSSPTPLGLQETIAESLYIARPLLHLASLG 235
Query: 239 KYGIRSWIPWFLSLAVDFTGLGFLS 263
G RSW PW LS ++ T LS
Sbjct: 236 ICGKRSWKPWILSGLLEITSFSLLS 260
>sp|Q9Y5Y5|PEX16_HUMAN Peroxisomal membrane protein PEX16 OS=Homo sapiens GN=PEX16 PE=1
SV=2
Length = 336
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 56/268 (20%)
Query: 35 YKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAINEHIIE---- 90
Y+ +V R+ LE+ G ++LL F++S E V + ++ +N+ I+
Sbjct: 11 YQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELR 70
Query: 91 ----TTPSQKG--------SDLEILVEVVAQHYYGDKKKWNFIAITEATNLTLE------ 132
+ SQ+ +E+ +E+ A +G+ +W IA+ + L
Sbjct: 71 KKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALVQLAKAVLRMLLLLW 130
Query: 133 ---AVQSGKP--------------GRNQRHDYLQNNYGHNSWNLEGRALSALNRFGENAR 175
+Q+ P G + ++ Q+ G S N R L
Sbjct: 131 FKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRS-NRVVRTLQNTPSLHSRHW 189
Query: 176 TASEPVWLQRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVL 235
A + ++ QH + + P P+ G + E L+I RPL+++L
Sbjct: 190 GAPQQREGRQQQHHEELSATPTPL----------------GLQETIAEFLYIARPLLHLL 233
Query: 236 FIRKYGIRSWIPWFLSLAVDFTGLGFLS 263
+ +G RSW PW L+ VD T L LS
Sbjct: 234 SLGLWGQRSWKPWLLAGVVDVTSLSLLS 261
>sp|Q2KII7|PEX16_BOVIN Peroxisomal membrane protein PEX16 OS=Bos taurus GN=PEX16 PE=2 SV=2
Length = 328
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 48/260 (18%)
Query: 35 YKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAINEHIIETTPS 94
Y+ +V R+ LE+ GL++LL F++S E V + ++ +N+ I+
Sbjct: 11 YQEYVTRHPAATAQLETAVRGLSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELR 70
Query: 95 QKGSD----------------LEILVEVVAQHYYGDKKKWNFIAITEATNLTLE------ 132
+K +E+ +E+ A +G+ +W IA+ + L
Sbjct: 71 KKLPMSLSQQRLLTWLSVLECVEVFMEMGATKVWGEVGRWLVIALIQLAKAVLRMFLLIW 130
Query: 133 ---AVQSGKPGRN-QRHDYLQNNYG-HNSWNLE----GRALSALNRFGENARTASEPVWL 183
+Q+ P R Q+ G H+S + E G+ + + R +N + W
Sbjct: 131 FKAGLQTSPPIVPLDREIQAQSRDGDHSSGSQEQSYVGKRSNRVVRTLQNTPSLHSRHW- 189
Query: 184 QRIQHQQAIMEPPAPMVERPTLSKLLSAKGTIGALFVMGEVLFITRPLIYVLFIRKYGIR 243
Q ++ + P P+ + T++ E L I RPL+++L + +G R
Sbjct: 190 GAPQQREELGVAPTPLGLQETIA----------------ESLHIARPLLHLLSLGLWGQR 233
Query: 244 SWIPWFLSLAVDFTGLGFLS 263
SW PW LS VD T L LS
Sbjct: 234 SWTPWLLSGVVDVTSLSLLS 253
>sp|Q550G0|PEX16_DICDI Peroxisome biogenesis factor 16 OS=Dictyostelium discoideum
GN=pex16 PE=3 SV=1
Length = 400
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 221 MGEVLFITRPLIYVLFIRKYGIRSWIPWFLSLAVDFTGLGF 261
+GE+LFI RP+IY + +G +SW PWFLSL + F
Sbjct: 277 IGEILFIFRPVIYWVSYCIFGKKSWKPWFLSLVTELLSKSF 317
>sp|P78980|PEX16_YARLI Peroxisomal membrane protein PEX16 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PEX16 PE=3 SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 32 MDAYKRWVRRNRDYVHSLESLANGLTWLLPEWFSESEIGPEAVTTFLGIITAINEHII 89
+D+Y +++ RN + S+ES ++++LP F++ EI E + L ++ ++ II
Sbjct: 20 LDSYDKFLVRNAASIGSIESTLRTVSYVLPGRFNDVEIATETLYAVLNVLGLYHDTII 77
>sp|Q7XT34|TPP5_ORYSJ Probable trehalose-phosphate phosphatase 5 OS=Oryza sativa subsp.
japonica GN=TPP5 PE=2 SV=2
Length = 349
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 77 FLGIITAINEHIIETTPSQKGSDLEILVEVVAQHYYG-DKKKWNFIA 122
FL +IT +++ +IE T + KG+ +E V+ HY DKK W +A
Sbjct: 186 FLTMITEVSKSLIEVTKAIKGATVENNKFCVSVHYRNVDKKNWKLVA 232
>sp|Q5R6T0|FLRT3_PONAB Leucine-rich repeat transmembrane protein FLRT3 OS=Pongo abelii
GN=FLRT3 PE=2 SV=1
Length = 649
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 91 TTPSQKG-SDLEILV---EVVAQHYYGDKKKWNFIAITEATNL--TLEAVQSGKPGRNQR 144
++PS +G + L+ LV ++ H GDK +N + +TE + + +L A PG N R
Sbjct: 191 SSPSLQGLTSLKRLVLDGNLLNNHGLGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTNLR 250
Query: 145 HDYLQNNY 152
YLQ+N+
Sbjct: 251 KLYLQDNH 258
>sp|Q9NZU0|FLRT3_HUMAN Leucine-rich repeat transmembrane protein FLRT3 OS=Homo sapiens
GN=FLRT3 PE=1 SV=1
Length = 649
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 91 TTPSQKG-SDLEILV---EVVAQHYYGDKKKWNFIAITEATNL--TLEAVQSGKPGRNQR 144
++PS +G + L+ LV ++ H GDK +N + +TE + + +L A PG N R
Sbjct: 191 SSPSLQGLTSLKRLVLDGNLLNNHGLGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTNLR 250
Query: 145 HDYLQNNY 152
YLQ+N+
Sbjct: 251 KLYLQDNH 258
>sp|Q9H2D6|TARA_HUMAN TRIO and F-actin-binding protein OS=Homo sapiens GN=TRIOBP PE=1
SV=3
Length = 2365
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 135 QSGKPGRNQRHDYLQNNYGHNSWNLEGRALSALNRFG--ENARTASEPVW 182
Q+ P R +HD Q+++G +NL RA S+ + G +RT+S PV+
Sbjct: 948 QTSSPSRPAQHDPPQSSFGPTQYNLPSRATSSSHNPGHQSTSRTSS-PVY 996
>sp|Q51910|FLHA_PROMI Flagellar biosynthesis protein FlhA OS=Proteus mirabilis GN=flhA
PE=3 SV=1
Length = 696
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 24/96 (25%)
Query: 84 INEHIIETTPSQKG-SDLEILVEV-----VAQHYYGDKKKWNFIAITEATN-LTLEAVQS 136
I E + E P QK ++L +V V + QH++GDK++ I + L L+A+QS
Sbjct: 559 ILEALAEHAPEQKDPAELTAVVRVALRRAITQHWFGDKEEIQVIGLDAGLERLLLQAMQS 618
Query: 137 G---KPGRNQRHDYLQNNYGHNSWNLEGRALSALNR 169
G +PG + N+E +AL A+ R
Sbjct: 619 GGGLEPGLAE--------------NIEQQALDAVRR 640
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,632,878
Number of Sequences: 539616
Number of extensions: 4346732
Number of successful extensions: 9846
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9825
Number of HSP's gapped (non-prelim): 17
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)