Query 041078
Match_columns 297
No_of_seqs 129 out of 164
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041078.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041078hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mo6a2 d.48.1.1 (A:270-329) R 39.9 7.6 0.00055 26.3 2.3 23 33-55 35-57 (60)
2 d1u94a2 d.48.1.1 (A:269-328) R 32.0 12 0.00088 25.2 2.3 23 33-55 35-57 (60)
3 d1xp8a2 d.48.1.1 (A:283-341) R 31.2 12 0.00087 25.2 2.1 23 33-55 34-56 (59)
4 d2gena2 a.121.1.1 (A:76-193) P 21.2 45 0.0032 23.0 3.9 26 25-50 4-29 (118)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 10.8 1.4E+02 0.01 17.8 3.5 21 219-239 7-27 (36)
6 d1no1a_ a.179.1.1 (A:) Repliso 10.4 69 0.005 21.2 2.1 22 49-70 6-27 (67)
7 d1nvma1 a.5.7.1 (A:291-341) 4- 10.4 77 0.0056 20.5 2.3 32 98-129 18-49 (51)
8 d3b7sa3 d.92.1.13 (A:209-460) 8.5 46 0.0034 26.4 0.8 37 7-43 8-44 (252)
9 d1zk8a2 a.121.1.1 (A:78-182) T 7.8 1.2E+02 0.0085 20.7 2.7 21 27-47 6-26 (105)
10 d1vi0a2 a.121.1.1 (A:78-194) H 7.7 1.4E+02 0.01 20.0 3.1 24 24-47 2-25 (117)
No 1
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.95 E-value=7.6 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHhhcchhhHhHHHHHhh
Q 041078 33 DAYKRWVRRNRDYVHSLESLANG 55 (297)
Q Consensus 33 ~~Y~~~V~~Np~~v~~lEs~lr~ 55 (297)
+.=+.|+..||+....||..+|-
T Consensus 35 e~a~~~L~enpel~~eie~~ir~ 57 (60)
T d1mo6a2 35 ENARNFLVENADVADEIEKKIKE 57 (60)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHH
Confidence 44578999999999999999874
No 2
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.99 E-value=12 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=19.6
Q ss_pred HHHHHHHhhcchhhHhHHHHHhh
Q 041078 33 DAYKRWVRRNRDYVHSLESLANG 55 (297)
Q Consensus 33 ~~Y~~~V~~Np~~v~~lEs~lr~ 55 (297)
+.=+.|+..||+....||..+|-
T Consensus 35 e~~~~~L~enpel~~eie~~ire 57 (60)
T d1u94a2 35 ANATAWLKDNPETAKEIEKKVRE 57 (60)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHH
Confidence 34578999999999999998873
No 3
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=31.23 E-value=12 Score=25.17 Aligned_cols=23 Identities=0% Similarity=0.089 Sum_probs=19.7
Q ss_pred HHHHHHHhhcchhhHhHHHHHhh
Q 041078 33 DAYKRWVRRNRDYVHSLESLANG 55 (297)
Q Consensus 33 ~~Y~~~V~~Np~~v~~lEs~lr~ 55 (297)
+.=+.|+..||+....||..+|-
T Consensus 34 e~a~~~L~enpel~~eie~~i~~ 56 (59)
T d1xp8a2 34 EKTIAYIAERPEMEQEIRDRVMA 56 (59)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHH
Confidence 34578999999999999998874
No 4
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.23 E-value=45 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHhHH
Q 041078 25 LDRVCKAMDAYKRWVRRNRDYVHSLE 50 (297)
Q Consensus 25 l~~~~~~~~~Y~~~V~~Np~~v~~lE 50 (297)
-.++..+..+|-+||.+||+...-|.
T Consensus 4 ~e~lr~~v~~~~~~v~~~p~~~r~l~ 29 (118)
T d2gena2 4 EETVRLLVTSYIDWVVANPDWARFIL 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 35788899999999999999887554
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.77 E-value=1.4e+02 Score=17.80 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041078 219 FVMGEVLFITRPLIYVLFIRK 239 (297)
Q Consensus 219 ~~lAE~LyIlRPLIYll~l~~ 239 (297)
..+|-.|+|+=|-++++-+..
T Consensus 7 g~iAt~LFilvPt~FLliLyv 27 (36)
T d2axtm1 7 GLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhe
Confidence 369999999999999988754
No 6
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=10.43 E-value=69 Score=21.17 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhccccCCCCcch
Q 041078 49 LESLANGLTWLLPEWFSESEIG 70 (297)
Q Consensus 49 lEs~lr~lsyllpgrf~~se~~ 70 (297)
+-..++..|-|-||||...++.
T Consensus 6 vvqilkavsefypgrfqpddlk 27 (67)
T d1no1a_ 6 VVQILKAVSEFYPGRFQPDDLK 27 (67)
T ss_dssp HHHHHHHHHHHSTTTCCCTTHH
T ss_pred HHHHHHHHHHHCCCCCCccccc
Confidence 3457788899999999876653
No 7
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=10.42 E-value=77 Score=20.53 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=21.2
Q ss_pred chhhHHHhhHHhHhcCCCcceehhHHHHHHHH
Q 041078 98 SDLEILVEVVAQHYYGDKKKWNFIAITEATNL 129 (297)
Q Consensus 98 e~~Evl~Em~a~r~~G~~~rW~~I~lie~~Ka 129 (297)
.--|+|+|++-++.-|..--+.+=+.++..|+
T Consensus 18 ~~rdil~ElGrR~~VgGQEDmIiDvA~~l~~~ 49 (51)
T d1nvma1 18 KTLDILVELGHRRMVGGQEDMIVDVALDLLAA 49 (51)
T ss_dssp CHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhcccccchHHHHHHHHHHHHHh
Confidence 34589999999888665555555555555543
No 8
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.53 E-value=46 Score=26.41 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=31.1
Q ss_pred eeEEEEeeeeecCcchhhHHHHHHHHHHHHHHHhhcc
Q 041078 7 LRVWVWTRRFRKPSLFLCLDRVCKAMDAYKRWVRRNR 43 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~Y~~~V~~Np 43 (297)
.||-||++.-........+....+.++.|+++....|
T Consensus 8 ~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g~YP 44 (252)
T d3b7sa3 8 PRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGGPYV 44 (252)
T ss_dssp TTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHCCCC
T ss_pred CceEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4788899887777777788888899999999987777
No 9
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=7.77 E-value=1.2e+02 Score=20.73 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhcchhhH
Q 041078 27 RVCKAMDAYKRWVRRNRDYVH 47 (297)
Q Consensus 27 ~~~~~~~~Y~~~V~~Np~~v~ 47 (297)
.+..+..+|-+|-.+||+.-.
T Consensus 6 ~l~al~~aY~~FA~~~P~~y~ 26 (105)
T d1zk8a2 6 AIHALGEAYVAFVRKHPGLYE 26 (105)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHH
Confidence 567788999999999997653
No 10
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=7.72 E-value=1.4e+02 Score=20.04 Aligned_cols=24 Identities=0% Similarity=0.050 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHhhcchhhH
Q 041078 24 CLDRVCKAMDAYKRWVRRNRDYVH 47 (297)
Q Consensus 24 ~l~~~~~~~~~Y~~~V~~Np~~v~ 47 (297)
...++..++..|=.++.+||+.+.
T Consensus 2 a~e~L~~~i~~~~~~~~~~~~~~~ 25 (117)
T d1vi0a2 2 AKEKLALVISKHFSLLAGDHNLAI 25 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcchHH
Confidence 456889999999999999998875
Done!