BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041079
(945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRV 60
+ G L + IE S +V++ SE YA+S WCLDELV I++F+++ + V+P+FY V
Sbjct: 46 LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGV 105
Query: 61 DPSDLRNQSGTFGDSYLKLEERFKENSKKLQSWRNALKEAAGLSGFYSQNFRPESELIKE 120
+P+ +R Q+G + + K R E+ +K+ WR AL A LSG S + +S+L+ +
Sbjct: 106 EPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDK 161
Query: 121 VLNQI 125
+ N+I
Sbjct: 162 IANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 3 RGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYA-QIVIPVFYRVD 61
+G EI +L+ AI+ S I V I S YA S+WCL EL +I+ + E +I++P+FY VD
Sbjct: 75 KGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVD 134
Query: 62 PSDLRNQSGTFGDSYLKLEERFKENSKKLQSWRNALKEAAGLSGFY 107
PSD+R+Q+G + ++ K +F + + +Q+W++ALK+ L G++
Sbjct: 135 PSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWH 178
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 27/122 (22%)
Query: 523 LKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEI-SSLSNIEKIILSGTA 581
LK + I P +P L+EL +LRGC L+ P I + ++++IL
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEEL---DLRGCTALRNYPPIFGGRAPLKRLIL---- 260
Query: 582 IEEXXXXXXXXXXXXXXXXQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVE 641
+ C L +LP + +L LE L+L C NL R P I +
Sbjct: 261 -------------------KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Query: 642 AS 643
A+
Sbjct: 302 AN 303
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 606 LKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASN---------SLYAYGTASSEV 656
L++LP S+ L L +L++ C L PE + + +AS SL T +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 657 PSSIVRSNNFRFLSFRES 674
P+SI N + L R S
Sbjct: 199 PASIANLQNLKSLKIRNS 216
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 540 PSFIPYLKELVILNLRGCKGLKKLPEI----------SSLSNIEKIILSGTAIEEXXXXX 589
P+ I L L L++R C L +LPE L N++ + L T I
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202
Query: 590 XXXXXXXXXXXQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIG 638
+ L +L ++ L LE+L+L C+ LR +P G
Sbjct: 203 ANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 467 NMGTEKIEGICLDMSKVKEMHLN------SDTFTKMPKLRFLKFYRSSINGENKCKQQHH 520
N+G +I + ++V E N + TF+++ L FL R IN ++ Q H
Sbjct: 20 NLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH 79
Query: 521 GKLKQIIISAGNFF----TKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576
+L I+++ T P F+ +L L G L+ +P + +L N+E +
Sbjct: 80 HQLNTIVLTGNPLIFMAETSLTGPKFLKHL----FLTQTGISNLEFIP-VHNLENLESLH 134
Query: 577 LSGTAI 582
L I
Sbjct: 135 LGSNHI 140
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%)
Query: 4 GDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPS 63
GD + S+ + +S +++ S + W EL + + + ++P++++V
Sbjct: 60 GDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKD 119
Query: 64 DLRNQSGTFGD 74
++ + S T D
Sbjct: 120 EVASFSPTMAD 130
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 346 VWESAINKLKRFLHPSIQEVLKVSYDGL---DDNEKNIFLD 383
V E A+ KLK S++ VL VS DGL DD K++ +D
Sbjct: 62 VCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVD 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,475,136
Number of Sequences: 62578
Number of extensions: 951716
Number of successful extensions: 2236
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2226
Number of HSP's gapped (non-prelim): 13
length of query: 945
length of database: 14,973,337
effective HSP length: 108
effective length of query: 837
effective length of database: 8,214,913
effective search space: 6875882181
effective search space used: 6875882181
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)