Query 041079
Match_columns 945
No_of_seqs 817 out of 5743
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-127 2E-132 1217.1 83.3 891 1-931 49-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-60 4.9E-65 570.9 30.1 450 142-627 161-652 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-36 2.4E-41 332.1 14.7 260 144-408 1-284 (287)
4 PLN03194 putative disease resi 100.0 7E-31 1.5E-35 250.4 11.5 114 1-131 64-179 (187)
5 PLN00113 leucine-rich repeat r 99.9 2E-26 4.3E-31 293.5 20.7 318 446-773 42-368 (968)
6 PLN00113 leucine-rich repeat r 99.9 3.7E-24 8E-29 272.7 17.9 294 479-774 170-488 (968)
7 KOG0444 Cytoskeletal regulator 99.9 2.1E-24 4.4E-29 234.2 -3.1 277 493-778 74-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 5.6E-23 1.2E-27 223.2 -2.2 262 486-758 93-380 (1255)
9 PLN03210 Resistant to P. syrin 99.8 5.7E-20 1.2E-24 234.5 20.3 265 496-775 610-944 (1153)
10 KOG4194 Membrane glycoprotein 99.8 9.5E-22 2.1E-26 213.0 2.9 273 478-753 130-429 (873)
11 KOG4194 Membrane glycoprotein 99.8 1.7E-21 3.8E-26 211.0 1.1 310 462-778 162-484 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 3.9E-26 202.4 -9.6 248 490-752 61-309 (565)
13 KOG0472 Leucine-rich repeat pr 99.7 1.6E-20 3.5E-25 195.4 -9.3 261 497-772 45-308 (565)
14 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.8E-23 160.3 -3.1 168 541-739 27-195 (264)
15 PRK15387 E3 ubiquitin-protein 99.7 8.8E-16 1.9E-20 182.2 15.9 159 570-755 302-460 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 8.5E-16 1.8E-20 183.6 14.0 221 521-772 199-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.7E-20 179.7 16.0 233 497-773 222-457 (788)
18 KOG0618 Serine/threonine phosp 99.6 3.1E-17 6.6E-22 187.9 -0.5 203 569-773 240-488 (1081)
19 KOG0617 Ras suppressor protein 99.6 6.5E-18 1.4E-22 156.5 -4.8 167 561-758 24-190 (264)
20 PRK15370 E3 ubiquitin-protein 99.6 2.3E-15 4.9E-20 180.0 12.6 224 523-778 180-404 (754)
21 KOG0618 Serine/threonine phosp 99.6 5.3E-17 1.1E-21 186.0 -4.9 151 606-758 253-424 (1081)
22 PF01582 TIR: TIR domain; Int 99.5 6.5E-15 1.4E-19 141.6 2.1 98 1-98 38-140 (141)
23 cd00116 LRR_RI Leucine-rich re 99.4 1.9E-14 4.2E-19 159.5 -2.4 139 491-629 17-177 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 4.2E-14 9.2E-19 156.8 -1.0 250 502-753 3-291 (319)
25 PRK04841 transcriptional regul 99.4 7E-11 1.5E-15 150.2 26.3 290 133-444 9-335 (903)
26 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 151.1 -1.4 226 534-772 62-291 (722)
27 KOG4237 Extracellular matrix p 99.3 3E-14 6.6E-19 149.1 -6.3 273 478-769 72-354 (498)
28 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.5E-18 144.8 -4.8 276 474-772 47-333 (498)
29 KOG0532 Leucine-rich repeat (L 99.2 3E-13 6.5E-18 147.8 -4.5 203 558-772 60-271 (722)
30 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 3E-16 140.8 7.2 198 551-758 97-295 (394)
31 smart00255 TIR Toll - interleu 99.1 1.8E-10 3.8E-15 110.9 10.2 98 4-102 41-139 (140)
32 PRK00411 cdc6 cell division co 99.1 3.3E-09 7.2E-14 121.2 21.8 238 137-387 28-308 (394)
33 TIGR00635 ruvB Holliday juncti 99.1 1.6E-09 3.4E-14 119.2 17.8 244 139-423 4-289 (305)
34 KOG4658 Apoptotic ATPase [Sign 99.1 3.5E-11 7.5E-16 146.6 2.4 247 519-778 521-787 (889)
35 PF01637 Arch_ATPase: Archaeal 99.1 3E-10 6.5E-15 119.7 9.0 190 141-334 1-233 (234)
36 TIGR02928 orc1/cdc6 family rep 99.0 3.3E-08 7.1E-13 111.8 24.7 239 137-387 13-300 (365)
37 COG4886 Leucine-rich repeat (L 99.0 1.4E-10 2.9E-15 132.7 5.0 204 525-741 97-301 (394)
38 PRK00080 ruvB Holliday junctio 99.0 2.6E-09 5.7E-14 118.2 14.9 253 137-423 23-310 (328)
39 PF05729 NACHT: NACHT domain 99.0 2.2E-09 4.8E-14 106.5 12.1 141 159-304 1-163 (166)
40 KOG3207 Beta-tubulin folding c 99.0 7.9E-11 1.7E-15 125.6 -0.6 107 569-675 171-282 (505)
41 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.6E-15 122.4 0.6 203 544-752 118-338 (505)
42 TIGR03015 pepcterm_ATPase puta 98.9 1.2E-07 2.6E-12 102.2 21.0 175 158-339 43-242 (269)
43 KOG1259 Nischarin, modulator o 98.9 4.7E-10 1E-14 113.7 1.5 36 496-531 181-224 (490)
44 COG2909 MalT ATP-dependent tra 98.9 6.6E-08 1.4E-12 112.2 19.0 287 137-444 17-341 (894)
45 COG2256 MGS1 ATPase related to 98.9 3E-08 6.6E-13 105.8 14.1 169 137-330 22-207 (436)
46 COG3903 Predicted ATPase [Gene 98.8 4.5E-09 9.7E-14 113.0 6.6 282 153-442 9-315 (414)
47 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3E-14 110.3 1.5 107 636-751 279-385 (490)
48 COG3899 Predicted ATPase [Gene 98.8 5.1E-08 1.1E-12 119.7 14.3 301 141-444 2-389 (849)
49 KOG1909 Ran GTPase-activating 98.8 8.8E-11 1.9E-15 122.1 -8.3 185 566-752 88-310 (382)
50 PF14580 LRR_9: Leucine-rich r 98.7 8.3E-09 1.8E-13 101.4 3.6 55 694-748 88-148 (175)
51 PRK06893 DNA replication initi 98.7 3.1E-07 6.6E-12 96.0 14.7 147 158-332 39-200 (229)
52 PRK13342 recombination factor 98.7 2.9E-07 6.4E-12 105.1 15.6 173 137-334 10-195 (413)
53 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.1E-13 98.8 4.6 104 642-754 20-127 (175)
54 PRK15386 type III secretion pr 98.6 9.9E-08 2.1E-12 104.8 10.0 74 568-652 50-123 (426)
55 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.5E-07 1.4E-11 93.8 14.1 171 138-336 14-202 (226)
56 PTZ00112 origin recognition co 98.5 2E-06 4.4E-11 100.7 17.2 236 137-385 753-1030(1164)
57 PTZ00202 tuzin; Provisional 98.5 5.7E-06 1.2E-10 90.3 18.8 188 104-303 220-433 (550)
58 KOG1909 Ran GTPase-activating 98.4 4.6E-08 9.9E-13 102.2 0.8 34 546-579 29-67 (382)
59 KOG0531 Protein phosphatase 1, 98.4 2.5E-08 5.4E-13 114.3 -1.3 215 519-751 70-288 (414)
60 PLN03150 hypothetical protein; 98.4 2.3E-07 5E-12 111.3 6.5 106 571-676 419-527 (623)
61 PRK12402 replication factor C 98.4 3.8E-06 8.2E-11 93.9 15.9 191 137-332 13-223 (337)
62 PRK15386 type III secretion pr 98.4 6.7E-07 1.5E-11 98.3 9.2 158 589-773 48-212 (426)
63 TIGR01242 26Sp45 26S proteasom 98.4 3.5E-06 7.5E-11 94.8 15.2 169 137-329 120-328 (364)
64 PLN03150 hypothetical protein; 98.4 3.4E-07 7.3E-12 109.8 7.3 107 594-706 419-527 (623)
65 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.6E-11 81.7 10.0 119 159-296 3-127 (128)
66 PRK14961 DNA polymerase III su 98.4 5.8E-06 1.3E-10 92.7 16.1 175 137-331 14-216 (363)
67 KOG0531 Protein phosphatase 1, 98.4 5.7E-08 1.2E-12 111.4 -0.1 195 545-752 70-267 (414)
68 KOG2120 SCF ubiquitin ligase, 98.4 9E-09 1.9E-13 104.7 -6.6 174 571-773 186-375 (419)
69 cd00009 AAA The AAA+ (ATPases 98.4 3.8E-06 8.3E-11 81.0 11.9 121 142-275 1-131 (151)
70 PRK07471 DNA polymerase III su 98.3 2.5E-05 5.4E-10 86.8 19.5 190 137-336 17-239 (365)
71 PF05496 RuvB_N: Holliday junc 98.3 2.9E-06 6.4E-11 85.2 10.7 167 137-332 22-218 (233)
72 PRK07003 DNA polymerase III su 98.3 5.1E-06 1.1E-10 97.2 14.3 173 137-329 14-214 (830)
73 PRK04195 replication factor C 98.3 1.1E-05 2.4E-10 94.1 17.3 172 137-332 12-199 (482)
74 PRK14963 DNA polymerase III su 98.3 1E-05 2.2E-10 93.7 16.6 180 137-332 12-214 (504)
75 PRK14960 DNA polymerase III su 98.3 9.7E-06 2.1E-10 94.0 15.6 175 137-331 13-215 (702)
76 PRK14949 DNA polymerase III su 98.3 1.4E-05 3E-10 95.6 16.9 176 137-332 14-217 (944)
77 PRK13341 recombination factor 98.3 7.4E-06 1.6E-10 98.4 14.8 167 137-329 26-211 (725)
78 PRK12323 DNA polymerase III su 98.3 8.5E-06 1.8E-10 94.2 14.5 176 137-332 14-222 (700)
79 PRK05564 DNA polymerase III su 98.3 1.9E-05 4.1E-10 87.0 16.8 175 139-335 4-190 (313)
80 PLN03025 replication factor C 98.3 8.9E-06 1.9E-10 89.7 14.1 177 137-329 11-194 (319)
81 PRK08727 hypothetical protein; 98.3 1E-05 2.2E-10 84.8 13.8 163 139-329 19-198 (233)
82 PRK14957 DNA polymerase III su 98.3 1.8E-05 3.9E-10 91.7 16.7 174 137-330 14-215 (546)
83 PRK00440 rfc replication facto 98.3 1.4E-05 3E-10 88.6 15.3 179 137-331 15-199 (319)
84 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 71.9 3.6 58 694-751 1-60 (61)
85 COG1474 CDC6 Cdc6-related prot 98.2 3.6E-05 7.8E-10 85.4 17.3 183 137-327 15-229 (366)
86 PRK14962 DNA polymerase III su 98.2 2.3E-05 4.9E-10 90.1 16.2 180 137-336 12-220 (472)
87 TIGR02397 dnaX_nterm DNA polym 98.2 2.9E-05 6.3E-10 87.4 16.8 178 137-334 12-217 (355)
88 PF13191 AAA_16: AAA ATPase do 98.2 2.2E-06 4.7E-11 86.7 6.5 46 140-185 1-51 (185)
89 PRK08084 DNA replication initi 98.2 5.6E-05 1.2E-09 79.3 17.2 165 139-331 22-205 (235)
90 PRK14956 DNA polymerase III su 98.2 2E-05 4.4E-10 89.0 14.6 179 137-330 16-217 (484)
91 PRK09087 hypothetical protein; 98.2 2.4E-05 5.3E-10 81.2 14.3 137 158-333 44-193 (226)
92 PRK08691 DNA polymerase III su 98.2 1.5E-05 3.2E-10 93.4 13.9 175 137-331 14-216 (709)
93 PRK06645 DNA polymerase III su 98.2 3.1E-05 6.8E-10 89.3 16.2 178 137-330 19-224 (507)
94 PF13401 AAA_22: AAA domain; P 98.2 1.2E-05 2.6E-10 76.2 10.7 109 158-273 4-125 (131)
95 PRK07994 DNA polymerase III su 98.2 2.7E-05 5.9E-10 91.7 15.7 176 137-332 14-217 (647)
96 PRK03992 proteasome-activating 98.2 3.4E-05 7.4E-10 87.2 15.9 150 137-306 129-317 (389)
97 PRK08903 DnaA regulatory inact 98.2 2.2E-05 4.7E-10 82.3 13.4 170 137-338 16-202 (227)
98 KOG4341 F-box protein containi 98.1 3.1E-08 6.8E-13 105.6 -8.4 300 498-804 139-466 (483)
99 PF00308 Bac_DnaA: Bacterial d 98.1 2.4E-05 5.3E-10 80.9 12.8 153 158-329 34-202 (219)
100 KOG2028 ATPase related to the 98.1 8.8E-06 1.9E-10 85.4 9.3 146 137-303 136-293 (554)
101 PF13855 LRR_8: Leucine rich r 98.1 2.7E-06 5.8E-11 68.5 4.1 59 570-628 1-60 (61)
102 PRK14964 DNA polymerase III su 98.1 4.6E-05 1E-09 87.1 15.3 174 137-330 11-212 (491)
103 PRK05642 DNA replication initi 98.1 5.5E-05 1.2E-09 79.3 14.8 146 158-331 45-204 (234)
104 KOG2120 SCF ubiquitin ligase, 98.1 9.4E-08 2E-12 97.4 -6.0 139 491-629 204-350 (419)
105 TIGR00678 holB DNA polymerase 98.1 6.7E-05 1.5E-09 76.0 14.7 149 158-331 14-187 (188)
106 PRK09112 DNA polymerase III su 98.1 4.4E-05 9.6E-10 84.4 14.2 188 137-336 21-241 (351)
107 PRK14951 DNA polymerase III su 98.1 5.5E-05 1.2E-09 89.0 15.6 175 137-331 14-221 (618)
108 PF14516 AAA_35: AAA-like doma 98.1 0.00053 1.1E-08 75.8 22.3 198 137-341 9-245 (331)
109 TIGR02881 spore_V_K stage V sp 98.1 5.8E-05 1.3E-09 80.7 14.1 129 158-306 42-193 (261)
110 PRK05896 DNA polymerase III su 98.1 5.1E-05 1.1E-09 88.1 14.4 174 137-330 14-215 (605)
111 PRK14955 DNA polymerase III su 98.0 4.1E-05 8.9E-10 86.9 13.3 188 137-330 14-223 (397)
112 PRK07940 DNA polymerase III su 98.0 0.0001 2.2E-09 82.8 15.8 174 138-335 4-213 (394)
113 PRK14969 DNA polymerase III su 98.0 4.5E-05 9.8E-10 89.2 13.6 174 137-330 14-215 (527)
114 PRK14958 DNA polymerase III su 98.0 5.5E-05 1.2E-09 87.9 13.6 175 137-331 14-216 (509)
115 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.3E-09 90.2 16.6 165 116-304 163-358 (731)
116 PRK14970 DNA polymerase III su 98.0 6.4E-05 1.4E-09 84.9 13.7 175 137-330 15-204 (367)
117 PRK14087 dnaA chromosomal repl 98.0 4.8E-05 1E-09 87.3 12.3 163 159-336 142-320 (450)
118 PRK09376 rho transcription ter 98.0 1.1E-05 2.5E-10 87.9 6.6 90 158-250 169-270 (416)
119 TIGR03689 pup_AAA proteasome A 98.0 0.00013 2.8E-09 83.9 15.4 154 137-304 180-378 (512)
120 PRK09111 DNA polymerase III su 97.9 0.00012 2.7E-09 86.3 15.3 181 137-332 22-230 (598)
121 PRK14959 DNA polymerase III su 97.9 0.00011 2.5E-09 85.7 14.6 181 137-337 14-223 (624)
122 PHA02544 44 clamp loader, smal 97.9 9E-05 1.9E-09 81.9 13.3 145 137-302 19-171 (316)
123 PRK06305 DNA polymerase III su 97.9 0.0003 6.4E-09 80.9 17.6 174 137-330 15-217 (451)
124 PRK07764 DNA polymerase III su 97.9 0.0002 4.4E-09 87.3 17.0 174 137-330 13-216 (824)
125 PRK14088 dnaA chromosomal repl 97.9 0.00012 2.6E-09 83.9 14.3 156 159-332 131-302 (440)
126 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00018 3.8E-09 89.0 16.7 192 116-329 168-390 (852)
127 PTZ00361 26 proteosome regulat 97.9 5.1E-05 1.1E-09 85.9 10.9 150 137-306 181-369 (438)
128 PTZ00454 26S protease regulato 97.9 0.00023 4.9E-09 80.1 16.0 149 137-305 143-330 (398)
129 cd01128 rho_factor Transcripti 97.9 2.5E-05 5.4E-10 81.9 7.2 89 158-249 16-116 (249)
130 PRK14954 DNA polymerase III su 97.9 0.00021 4.6E-09 84.5 15.7 188 137-330 14-223 (620)
131 KOG2982 Uncharacterized conser 97.9 2.2E-06 4.9E-11 87.6 -0.7 65 693-757 198-266 (418)
132 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 59.1 3.7 39 695-733 2-40 (44)
133 TIGR00362 DnaA chromosomal rep 97.9 0.0002 4.4E-09 81.9 15.1 154 159-331 137-306 (405)
134 KOG4341 F-box protein containi 97.9 3.5E-07 7.7E-12 97.7 -7.0 251 521-775 138-415 (483)
135 PRK00149 dnaA chromosomal repl 97.9 0.00016 3.5E-09 83.7 14.2 156 158-332 148-319 (450)
136 PRK14952 DNA polymerase III su 97.9 0.00027 5.9E-09 83.0 15.9 174 137-330 11-214 (584)
137 PRK14950 DNA polymerase III su 97.8 0.00012 2.6E-09 87.2 13.1 185 137-332 14-218 (585)
138 CHL00095 clpC Clp protease ATP 97.8 0.00022 4.8E-09 88.5 15.6 165 116-302 160-352 (821)
139 PRK14953 DNA polymerase III su 97.8 0.00045 9.7E-09 79.9 16.8 171 137-332 14-217 (486)
140 TIGR02903 spore_lon_C ATP-depe 97.8 0.00018 4E-09 85.8 14.1 46 137-182 152-199 (615)
141 KOG1859 Leucine-rich repeat pr 97.8 1.2E-06 2.5E-11 99.4 -4.2 174 586-773 102-291 (1096)
142 KOG1859 Leucine-rich repeat pr 97.8 2.8E-07 6.1E-12 104.3 -9.1 102 569-674 163-264 (1096)
143 PF13676 TIR_2: TIR domain; PD 97.8 4.1E-06 8.8E-11 75.5 -0.1 58 2-65 34-91 (102)
144 PRK08451 DNA polymerase III su 97.8 0.00044 9.6E-09 80.0 16.2 176 137-332 12-215 (535)
145 TIGR02880 cbbX_cfxQ probable R 97.8 0.00016 3.6E-09 77.9 12.0 128 160-305 60-209 (284)
146 PRK10865 protein disaggregatio 97.8 0.0005 1.1E-08 85.3 17.6 168 116-304 159-354 (857)
147 PRK07133 DNA polymerase III su 97.8 0.00023 5E-09 84.5 13.8 174 137-330 16-214 (725)
148 PRK06620 hypothetical protein; 97.7 0.00012 2.5E-09 75.5 9.3 129 159-328 45-182 (214)
149 PRK14948 DNA polymerase III su 97.7 0.00071 1.5E-08 80.5 17.1 185 137-332 14-219 (620)
150 PRK12422 chromosomal replicati 97.7 0.00052 1.1E-08 78.6 15.4 150 159-327 142-305 (445)
151 KOG2227 Pre-initiation complex 97.7 0.0014 3E-08 72.1 17.2 177 121-305 135-339 (529)
152 PF05673 DUF815: Protein of un 97.7 0.0011 2.3E-08 68.0 15.3 119 137-279 25-156 (249)
153 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00062 1.3E-08 84.9 16.6 165 117-304 155-349 (852)
154 PRK12377 putative replication 97.7 0.00063 1.4E-08 71.3 14.0 72 158-245 101-172 (248)
155 PRK06647 DNA polymerase III su 97.7 0.00073 1.6E-08 79.5 16.1 179 137-332 14-217 (563)
156 TIGR00767 rho transcription te 97.7 0.00011 2.3E-09 80.9 8.4 90 158-250 168-269 (415)
157 CHL00181 cbbX CbbX; Provisiona 97.7 0.00086 1.9E-08 72.3 15.1 129 160-306 61-211 (287)
158 CHL00176 ftsH cell division pr 97.7 0.00069 1.5E-08 80.7 15.6 168 137-327 181-386 (638)
159 PRK14971 DNA polymerase III su 97.7 0.00067 1.5E-08 80.7 15.4 173 137-330 15-217 (614)
160 PRK14086 dnaA chromosomal repl 97.7 0.00053 1.2E-08 79.9 14.1 151 159-328 315-481 (617)
161 KOG0989 Replication factor C, 97.7 0.0013 2.9E-08 68.5 15.3 175 137-328 34-223 (346)
162 PF12799 LRR_4: Leucine Rich r 97.6 5.7E-05 1.2E-09 55.9 3.8 41 717-758 1-41 (44)
163 PRK07399 DNA polymerase III su 97.6 0.0015 3.3E-08 71.3 16.1 185 139-334 4-220 (314)
164 PF00004 AAA: ATPase family as 97.6 0.00038 8.3E-09 65.7 10.2 23 161-183 1-23 (132)
165 PRK05563 DNA polymerase III su 97.6 0.0019 4.1E-08 76.3 17.9 169 137-330 14-215 (559)
166 PRK07952 DNA replication prote 97.6 0.0017 3.7E-08 67.9 15.5 74 159-247 100-173 (244)
167 COG2255 RuvB Holliday junction 97.5 0.00071 1.5E-08 69.7 11.4 229 137-399 24-286 (332)
168 COG1222 RPT1 ATP-dependent 26S 97.5 0.001 2.3E-08 70.7 12.7 165 138-329 150-357 (406)
169 PRK14965 DNA polymerase III su 97.5 0.00085 1.8E-08 79.6 13.6 173 137-329 14-214 (576)
170 PRK08116 hypothetical protein; 97.5 0.00044 9.6E-09 73.8 10.1 102 159-274 115-221 (268)
171 PRK11034 clpA ATP-dependent Cl 97.5 0.00083 1.8E-08 81.5 13.6 165 117-304 168-362 (758)
172 PRK08181 transposase; Validate 97.5 0.00064 1.4E-08 72.2 10.8 106 152-274 100-209 (269)
173 TIGR01241 FtsH_fam ATP-depende 97.5 0.00097 2.1E-08 78.3 13.4 169 137-328 53-259 (495)
174 PRK05707 DNA polymerase III su 97.5 0.0016 3.6E-08 71.4 14.1 157 158-335 22-203 (328)
175 COG1373 Predicted ATPase (AAA+ 97.4 0.0018 3.8E-08 73.4 14.0 135 144-300 22-163 (398)
176 COG5238 RNA1 Ran GTPase-activa 97.4 3.4E-05 7.4E-10 78.2 0.2 43 613-655 88-134 (388)
177 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0037 8E-08 72.2 16.5 149 138-306 227-407 (489)
178 KOG4579 Leucine-rich repeat (L 97.4 1.3E-05 2.8E-10 73.0 -2.9 109 548-659 28-141 (177)
179 KOG2543 Origin recognition com 97.4 0.0026 5.6E-08 68.3 13.4 159 137-303 4-192 (438)
180 COG0593 DnaA ATPase involved i 97.4 0.00094 2E-08 74.1 10.6 133 158-306 113-259 (408)
181 KOG2982 Uncharacterized conser 97.4 9E-05 2E-09 76.1 2.4 37 639-675 222-260 (418)
182 KOG3665 ZYG-1-like serine/thre 97.4 3.6E-05 7.9E-10 92.2 -0.5 61 568-629 171-232 (699)
183 TIGR00763 lon ATP-dependent pr 97.4 0.0051 1.1E-07 76.1 18.1 48 139-186 320-375 (775)
184 TIGR01243 CDC48 AAA family ATP 97.3 0.0024 5.3E-08 78.7 14.5 170 137-329 176-381 (733)
185 KOG3665 ZYG-1-like serine/thre 97.3 6.6E-05 1.4E-09 90.0 0.7 132 593-730 122-263 (699)
186 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00093 2E-08 70.4 8.8 90 158-250 69-177 (274)
187 TIGR01243 CDC48 AAA family ATP 97.3 0.0051 1.1E-07 75.9 16.5 167 138-328 452-656 (733)
188 PRK11331 5-methylcytosine-spec 97.2 0.00087 1.9E-08 75.1 8.4 55 139-193 175-231 (459)
189 KOG4579 Leucine-rich repeat (L 97.2 2E-05 4.3E-10 71.8 -3.6 61 692-752 75-135 (177)
190 TIGR00602 rad24 checkpoint pro 97.2 0.0022 4.7E-08 76.0 12.1 47 137-183 82-135 (637)
191 PRK06526 transposase; Provisio 97.2 0.0011 2.3E-08 70.1 8.5 28 158-185 98-125 (254)
192 PRK09183 transposase/IS protei 97.2 0.0013 2.8E-08 69.9 9.3 35 158-192 102-136 (259)
193 smart00382 AAA ATPases associa 97.2 0.0012 2.6E-08 62.7 8.1 34 159-192 3-36 (148)
194 PRK10787 DNA-binding ATP-depen 97.2 0.011 2.3E-07 72.7 17.7 154 139-304 322-506 (784)
195 PRK08058 DNA polymerase III su 97.2 0.0068 1.5E-07 67.0 14.5 147 140-303 6-181 (329)
196 PRK10536 hypothetical protein; 97.1 0.0024 5.2E-08 66.3 9.9 135 137-274 53-213 (262)
197 PRK08769 DNA polymerase III su 97.1 0.011 2.3E-07 64.5 15.4 166 146-336 11-209 (319)
198 PRK06090 DNA polymerase III su 97.1 0.023 5.1E-07 61.8 17.6 160 147-336 11-202 (319)
199 PLN00020 ribulose bisphosphate 97.1 0.0092 2E-07 64.8 14.0 151 158-329 148-332 (413)
200 COG5238 RNA1 Ran GTPase-activa 97.1 9.3E-05 2E-09 75.1 -0.9 39 590-628 89-131 (388)
201 COG0466 Lon ATP-dependent Lon 97.1 0.0091 2E-07 69.3 14.8 151 138-304 322-508 (782)
202 TIGR02640 gas_vesic_GvpN gas v 97.0 0.015 3.1E-07 62.2 15.2 38 146-183 9-46 (262)
203 KOG0730 AAA+-type ATPase [Post 97.0 0.0087 1.9E-07 68.8 13.9 145 140-307 435-618 (693)
204 PRK06921 hypothetical protein; 97.0 0.0013 2.8E-08 70.1 6.8 36 158-193 117-153 (266)
205 PRK06871 DNA polymerase III su 97.0 0.012 2.7E-07 64.1 14.3 170 148-332 11-200 (325)
206 PF01695 IstB_IS21: IstB-like 97.0 0.0014 3.1E-08 65.3 6.4 74 157-247 46-119 (178)
207 PF13177 DNA_pol3_delta2: DNA 97.0 0.0064 1.4E-07 59.7 10.8 135 143-292 1-162 (162)
208 KOG0991 Replication factor C, 96.9 0.0056 1.2E-07 61.1 9.9 97 137-249 25-126 (333)
209 COG3267 ExeA Type II secretory 96.9 0.032 6.9E-07 57.2 15.6 182 149-337 41-247 (269)
210 KOG0735 AAA+-type ATPase [Post 96.9 0.017 3.7E-07 66.7 15.0 159 158-333 431-614 (952)
211 KOG0733 Nuclear AAA ATPase (VC 96.9 0.012 2.6E-07 66.7 13.6 149 137-304 188-374 (802)
212 PF05621 TniB: Bacterial TniB 96.9 0.026 5.5E-07 60.0 15.5 185 139-331 34-257 (302)
213 PRK11889 flhF flagellar biosyn 96.9 0.021 4.6E-07 62.9 15.2 36 158-193 241-276 (436)
214 TIGR03346 chaperone_ClpB ATP-d 96.9 0.024 5.2E-07 70.9 17.7 54 139-192 565-629 (852)
215 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 64.1 5.2 59 595-655 44-102 (233)
216 PF10443 RNA12: RNA12 protein; 96.9 0.099 2.1E-06 58.1 19.9 187 144-340 1-283 (431)
217 COG2607 Predicted ATPase (AAA+ 96.8 0.011 2.5E-07 59.5 11.3 54 137-190 58-117 (287)
218 TIGR02639 ClpA ATP-dependent C 96.8 0.01 2.2E-07 73.1 13.5 46 138-183 453-509 (731)
219 PRK12608 transcription termina 96.8 0.0053 1.2E-07 67.4 9.7 97 150-249 122-233 (380)
220 PRK08118 topology modulation p 96.8 0.0025 5.4E-08 63.0 6.6 33 159-191 2-37 (167)
221 KOG2739 Leucine-rich acidic nu 96.8 0.00084 1.8E-08 68.6 3.1 83 690-772 61-154 (260)
222 PRK07993 DNA polymerase III su 96.8 0.025 5.4E-07 62.4 14.7 159 147-332 10-201 (334)
223 PRK00771 signal recognition pa 96.8 0.034 7.4E-07 63.3 16.1 28 158-185 95-122 (437)
224 PRK10865 protein disaggregatio 96.8 0.0068 1.5E-07 75.4 11.3 110 138-257 567-693 (857)
225 COG0542 clpA ATP-binding subun 96.7 0.0077 1.7E-07 71.8 10.5 112 138-259 490-618 (786)
226 KOG1644 U2-associated snRNP A' 96.7 0.0029 6.2E-08 62.1 5.5 56 548-604 43-99 (233)
227 PRK06835 DNA replication prote 96.6 0.0062 1.3E-07 66.8 8.7 36 158-193 183-218 (329)
228 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0069 1.5E-07 75.1 10.0 47 139-185 566-623 (852)
229 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4E-08 60.1 3.8 23 160-182 1-23 (121)
230 KOG2228 Origin recognition com 96.6 0.017 3.6E-07 61.2 10.8 167 137-304 22-219 (408)
231 COG1484 DnaC DNA replication p 96.6 0.011 2.5E-07 62.4 10.0 76 156-247 103-178 (254)
232 PRK10733 hflB ATP-dependent me 96.6 0.03 6.5E-07 67.7 14.7 129 158-306 185-337 (644)
233 cd01131 PilT Pilus retraction 96.6 0.0068 1.5E-07 61.8 8.0 107 159-275 2-110 (198)
234 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0023 5.1E-08 69.8 4.7 45 139-183 51-103 (361)
235 PF04665 Pox_A32: Poxvirus A32 96.6 0.009 1.9E-07 61.8 8.7 36 158-193 13-48 (241)
236 COG1223 Predicted ATPase (AAA+ 96.6 0.049 1.1E-06 55.6 13.4 169 137-328 119-318 (368)
237 KOG1947 Leucine rich repeat pr 96.5 0.00033 7.1E-09 82.4 -2.4 35 496-530 187-223 (482)
238 PRK07261 topology modulation p 96.5 0.011 2.3E-07 58.8 8.6 23 160-182 2-24 (171)
239 cd01120 RecA-like_NTPases RecA 96.5 0.015 3.2E-07 56.9 9.6 34 160-193 1-34 (165)
240 KOG0731 AAA+-type ATPase conta 96.5 0.028 6.1E-07 66.7 12.9 173 137-331 309-520 (774)
241 PF02562 PhoH: PhoH-like prote 96.4 0.0069 1.5E-07 61.2 6.9 122 149-274 10-156 (205)
242 COG1618 Predicted nucleotide k 96.4 0.0032 7E-08 59.5 4.2 34 159-192 6-40 (179)
243 CHL00095 clpC Clp protease ATP 96.4 0.012 2.5E-07 73.4 10.3 112 138-259 508-636 (821)
244 PRK06964 DNA polymerase III su 96.4 0.23 5E-06 54.7 19.1 91 235-335 131-225 (342)
245 COG2812 DnaX DNA polymerase II 96.4 0.033 7.1E-07 64.0 12.8 181 137-328 14-213 (515)
246 PRK08939 primosomal protein Dn 96.4 0.026 5.6E-07 61.5 11.5 99 158-273 156-260 (306)
247 PRK05541 adenylylsulfate kinas 96.4 0.017 3.8E-07 57.6 9.4 36 158-193 7-42 (176)
248 COG0488 Uup ATPase components 96.4 0.089 1.9E-06 61.4 16.3 126 158-290 348-511 (530)
249 KOG0652 26S proteasome regulat 96.3 0.09 2E-06 53.5 13.5 162 137-321 169-373 (424)
250 PRK04296 thymidine kinase; Pro 96.3 0.0072 1.6E-07 61.2 6.0 109 159-276 3-118 (190)
251 PRK11034 clpA ATP-dependent Cl 96.2 0.016 3.5E-07 70.6 9.6 45 139-183 458-513 (758)
252 KOG2739 Leucine-rich acidic nu 96.2 0.0023 5.1E-08 65.4 2.1 37 592-628 64-102 (260)
253 KOG0741 AAA+-type ATPase [Post 96.2 0.015 3.1E-07 64.9 8.2 127 158-303 538-685 (744)
254 TIGR00959 ffh signal recogniti 96.2 0.13 2.8E-06 58.5 15.9 26 158-183 99-124 (428)
255 TIGR01425 SRP54_euk signal rec 96.2 0.12 2.5E-06 58.5 15.4 35 158-192 100-134 (429)
256 COG0464 SpoVK ATPases of the A 96.2 0.089 1.9E-06 62.0 15.3 148 139-306 242-425 (494)
257 COG0470 HolB ATPase involved i 96.2 0.034 7.5E-07 61.5 11.3 140 140-296 2-173 (325)
258 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.063 1.4E-06 52.0 11.4 111 159-275 3-139 (159)
259 PRK04132 replication factor C 96.1 0.056 1.2E-06 66.1 13.6 147 166-331 574-727 (846)
260 KOG0734 AAA+-type ATPase conta 96.1 0.058 1.3E-06 60.4 12.3 145 139-304 304-484 (752)
261 COG0542 clpA ATP-binding subun 96.1 0.079 1.7E-06 63.5 14.4 149 138-303 169-345 (786)
262 PHA00729 NTP-binding motif con 96.1 0.017 3.8E-07 59.0 7.7 26 158-183 17-42 (226)
263 KOG1947 Leucine rich repeat pr 96.1 0.00039 8.5E-09 81.7 -5.0 112 519-630 186-308 (482)
264 PRK06696 uridine kinase; Valid 96.0 0.01 2.2E-07 61.8 5.6 42 144-185 3-49 (223)
265 PRK10867 signal recognition pa 96.0 0.16 3.6E-06 57.7 15.6 28 158-185 100-127 (433)
266 PRK12726 flagellar biosynthesi 96.0 0.38 8.2E-06 53.2 17.6 36 158-193 206-241 (407)
267 KOG0744 AAA+-type ATPase [Post 95.9 0.01 2.2E-07 62.3 5.1 36 158-193 177-216 (423)
268 PRK06762 hypothetical protein; 95.9 0.026 5.5E-07 55.8 7.9 25 158-182 2-26 (166)
269 PRK08699 DNA polymerase III su 95.9 0.085 1.8E-06 58.0 12.6 85 237-331 114-202 (325)
270 KOG1514 Origin recognition com 95.9 0.12 2.6E-06 60.2 14.0 130 137-271 394-546 (767)
271 TIGR00064 ftsY signal recognit 95.9 0.035 7.6E-07 59.4 9.2 36 158-193 72-107 (272)
272 PF13671 AAA_33: AAA domain; P 95.8 0.04 8.6E-07 52.7 8.6 24 160-183 1-24 (143)
273 KOG0727 26S proteasome regulat 95.8 0.092 2E-06 53.2 11.0 148 139-305 155-340 (408)
274 PF13238 AAA_18: AAA domain; P 95.8 0.0081 1.8E-07 56.3 3.6 22 161-182 1-22 (129)
275 PF14532 Sigma54_activ_2: Sigm 95.8 0.014 3E-07 55.7 5.2 42 142-183 1-46 (138)
276 PRK12724 flagellar biosynthesi 95.8 0.22 4.8E-06 55.8 15.1 25 158-182 223-247 (432)
277 KOG2004 Mitochondrial ATP-depe 95.7 0.011 2.3E-07 68.4 4.8 49 139-187 411-467 (906)
278 PRK09361 radB DNA repair and r 95.7 0.033 7.1E-07 58.1 8.2 37 158-194 23-59 (225)
279 cd01129 PulE-GspE PulE/GspE Th 95.7 0.027 5.8E-07 60.1 7.5 103 145-257 66-170 (264)
280 PRK12723 flagellar biosynthesi 95.7 0.13 2.8E-06 57.6 13.1 26 158-183 174-199 (388)
281 PF01583 APS_kinase: Adenylyls 95.7 0.015 3.3E-07 56.0 4.9 35 159-193 3-37 (156)
282 KOG0728 26S proteasome regulat 95.7 0.27 5.8E-06 49.9 13.7 142 140-304 147-331 (404)
283 PRK13531 regulatory ATPase Rav 95.7 0.017 3.7E-07 65.5 6.1 47 138-184 19-65 (498)
284 KOG0651 26S proteasome regulat 95.7 0.14 3.1E-06 53.7 12.1 117 158-293 166-305 (388)
285 PRK05973 replicative DNA helic 95.6 0.065 1.4E-06 55.7 9.7 43 151-193 57-99 (237)
286 TIGR01420 pilT_fam pilus retra 95.6 0.051 1.1E-06 60.5 9.6 113 150-272 113-228 (343)
287 cd01394 radB RadB. The archaea 95.6 0.055 1.2E-06 56.1 9.3 45 149-193 6-54 (218)
288 cd01858 NGP_1 NGP-1. Autoanti 95.6 0.091 2E-06 51.3 10.3 51 10-62 1-51 (157)
289 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.066 1.4E-06 53.7 9.6 23 160-182 1-23 (183)
290 KOG0733 Nuclear AAA ATPase (VC 95.6 0.25 5.5E-06 56.5 14.6 150 158-329 545-718 (802)
291 PF07726 AAA_3: ATPase family 95.6 0.0074 1.6E-07 55.5 2.2 29 161-189 2-30 (131)
292 cd03214 ABC_Iron-Siderophores_ 95.6 0.04 8.6E-07 55.3 7.8 125 158-288 25-171 (180)
293 PF00485 PRK: Phosphoribulokin 95.6 0.012 2.6E-07 59.9 4.0 26 160-185 1-26 (194)
294 PRK14974 cell division protein 95.6 0.45 9.7E-06 52.4 16.4 28 158-185 140-167 (336)
295 KOG0729 26S proteasome regulat 95.6 0.064 1.4E-06 54.7 8.9 51 140-195 178-243 (435)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.041 8.8E-07 52.9 7.4 109 158-288 26-140 (144)
297 cd01393 recA_like RecA is a b 95.5 0.076 1.6E-06 55.4 10.1 37 158-194 19-61 (226)
298 PRK10416 signal recognition pa 95.5 0.057 1.2E-06 59.1 9.3 28 158-185 114-141 (318)
299 PF08433 KTI12: Chromatin asso 95.5 0.0085 1.8E-07 63.8 2.7 27 159-185 2-28 (270)
300 KOG0738 AAA+-type ATPase [Post 95.5 0.082 1.8E-06 57.2 9.8 68 112-183 189-270 (491)
301 PRK05703 flhF flagellar biosyn 95.4 0.18 4E-06 57.5 13.5 36 158-193 221-258 (424)
302 PRK09280 F0F1 ATP synthase sub 95.4 0.056 1.2E-06 61.4 8.9 89 158-249 144-251 (463)
303 cd03223 ABCD_peroxisomal_ALDP 95.4 0.06 1.3E-06 53.2 8.2 120 158-289 27-161 (166)
304 COG3854 SpoIIIAA ncharacterize 95.4 0.075 1.6E-06 53.4 8.6 108 160-273 139-252 (308)
305 PRK07667 uridine kinase; Provi 95.4 0.025 5.5E-07 57.3 5.6 28 158-185 17-44 (193)
306 cd03238 ABC_UvrA The excision 95.4 0.064 1.4E-06 53.3 8.4 22 158-179 21-42 (176)
307 PRK15455 PrkA family serine pr 95.4 0.015 3.3E-07 66.8 4.3 46 139-184 76-129 (644)
308 PRK12727 flagellar biosynthesi 95.3 0.24 5.3E-06 57.0 13.8 44 142-185 326-377 (559)
309 COG4608 AppF ABC-type oligopep 95.3 0.043 9.4E-07 57.1 6.9 120 158-280 39-176 (268)
310 KOG2123 Uncharacterized conser 95.3 0.0012 2.7E-08 67.4 -4.2 83 547-632 19-103 (388)
311 COG4088 Predicted nucleotide k 95.2 0.034 7.4E-07 54.8 5.6 31 159-189 2-32 (261)
312 cd01123 Rad51_DMC1_radA Rad51_ 95.2 0.084 1.8E-06 55.5 9.3 36 158-193 19-60 (235)
313 KOG1969 DNA replication checkp 95.2 0.042 9E-07 64.0 7.1 73 158-249 326-400 (877)
314 PRK03839 putative kinase; Prov 95.2 0.016 3.5E-07 58.1 3.5 24 160-183 2-25 (180)
315 PF00006 ATP-synt_ab: ATP synt 95.2 0.059 1.3E-06 55.3 7.6 86 158-249 15-118 (215)
316 TIGR03574 selen_PSTK L-seryl-t 95.2 0.087 1.9E-06 55.9 9.2 26 160-185 1-26 (249)
317 PF00406 ADK: Adenylate kinase 95.2 0.031 6.7E-07 54.2 5.4 85 163-256 1-94 (151)
318 cd02019 NK Nucleoside/nucleoti 95.2 0.018 3.9E-07 47.5 3.1 23 160-182 1-23 (69)
319 PRK00625 shikimate kinase; Pro 95.1 0.016 3.6E-07 57.3 3.3 24 160-183 2-25 (173)
320 KOG0743 AAA+-type ATPase [Post 95.1 0.35 7.5E-06 53.9 13.7 147 158-336 235-410 (457)
321 PF00448 SRP54: SRP54-type pro 95.1 0.086 1.9E-06 53.4 8.6 84 158-245 1-92 (196)
322 cd01121 Sms Sms (bacterial rad 95.1 0.1 2.2E-06 58.3 9.9 45 149-193 69-117 (372)
323 PRK10463 hydrogenase nickel in 95.1 0.087 1.9E-06 56.2 8.8 43 148-190 92-136 (290)
324 cd03115 SRP The signal recogni 95.1 0.13 2.7E-06 51.2 9.6 33 160-192 2-34 (173)
325 TIGR03600 phage_DnaB phage rep 95.1 0.44 9.6E-06 54.8 15.3 70 141-217 174-247 (421)
326 TIGR01039 atpD ATP synthase, F 95.1 0.11 2.4E-06 58.8 10.0 89 158-249 143-250 (461)
327 TIGR01817 nifA Nif-specific re 95.1 0.25 5.4E-06 58.8 13.7 47 137-183 194-244 (534)
328 PF00560 LRR_1: Leucine Rich R 95.1 0.0086 1.9E-07 36.9 0.7 21 718-738 1-21 (22)
329 PRK12597 F0F1 ATP synthase sub 95.0 0.081 1.7E-06 60.4 8.8 89 158-249 143-250 (461)
330 PRK04040 adenylate kinase; Pro 95.0 0.022 4.9E-07 57.3 4.0 25 159-183 3-27 (188)
331 COG5635 Predicted NTPase (NACH 95.0 0.17 3.8E-06 63.2 12.6 227 158-386 222-481 (824)
332 PTZ00301 uridine kinase; Provi 95.0 0.019 4.2E-07 58.7 3.5 28 159-186 4-31 (210)
333 PRK14722 flhF flagellar biosyn 95.0 0.15 3.3E-06 56.6 10.6 36 158-193 137-174 (374)
334 TIGR03499 FlhF flagellar biosy 95.0 0.19 4.1E-06 54.3 11.1 36 158-193 194-231 (282)
335 PRK08233 hypothetical protein; 94.9 0.019 4.1E-07 57.6 3.2 26 158-183 3-28 (182)
336 TIGR02974 phageshock_pspF psp 94.9 0.2 4.3E-06 55.3 11.4 42 141-182 1-46 (329)
337 COG0563 Adk Adenylate kinase a 94.9 0.091 2E-06 52.3 7.9 88 160-255 2-97 (178)
338 COG0465 HflB ATP-dependent Zn 94.9 0.21 4.5E-06 58.4 11.7 150 137-305 148-334 (596)
339 KOG2123 Uncharacterized conser 94.9 0.0014 3.1E-08 67.0 -5.1 84 539-623 33-123 (388)
340 PRK07132 DNA polymerase III su 94.9 0.98 2.1E-05 48.9 16.2 165 148-336 5-186 (299)
341 cd03247 ABCC_cytochrome_bd The 94.8 0.12 2.6E-06 51.6 8.8 118 158-288 28-169 (178)
342 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 36.0 1.0 21 571-591 1-21 (22)
343 PTZ00088 adenylate kinase 1; P 94.8 0.074 1.6E-06 55.3 7.1 23 160-182 8-30 (229)
344 COG1066 Sms Predicted ATP-depe 94.8 0.19 4.2E-06 55.1 10.3 89 148-245 79-177 (456)
345 KOG2035 Replication factor C, 94.8 0.62 1.3E-05 48.4 13.3 210 137-356 11-260 (351)
346 KOG0736 Peroxisome assembly fa 94.7 1.2 2.6E-05 52.7 17.0 96 132-247 665-775 (953)
347 PF00910 RNA_helicase: RNA hel 94.7 0.021 4.6E-07 51.7 2.6 26 161-186 1-26 (107)
348 PRK00131 aroK shikimate kinase 94.7 0.028 6.1E-07 55.9 3.7 26 158-183 4-29 (175)
349 PRK13947 shikimate kinase; Pro 94.7 0.026 5.6E-07 56.1 3.3 26 160-185 3-28 (171)
350 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.067 1.5E-06 59.5 6.8 99 152-256 127-232 (358)
351 PRK05480 uridine/cytidine kina 94.6 0.027 5.8E-07 58.0 3.5 25 158-182 6-30 (209)
352 PRK06217 hypothetical protein; 94.6 0.13 2.8E-06 51.7 8.3 24 160-183 3-26 (183)
353 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.16 3.4E-06 53.7 9.0 92 158-254 69-180 (274)
354 PRK09270 nucleoside triphospha 94.6 0.037 8.1E-07 57.9 4.4 29 158-186 33-61 (229)
355 PRK11608 pspF phage shock prot 94.6 0.11 2.3E-06 57.5 8.2 44 138-181 5-52 (326)
356 cd02027 APSK Adenosine 5'-phos 94.6 0.12 2.5E-06 50.0 7.5 24 160-183 1-24 (149)
357 cd03216 ABC_Carb_Monos_I This 94.6 0.039 8.5E-07 54.3 4.3 120 158-288 26-155 (163)
358 PRK12678 transcription termina 94.6 0.066 1.4E-06 61.5 6.5 90 158-250 416-517 (672)
359 PRK15429 formate hydrogenlyase 94.5 0.18 3.8E-06 62.0 10.7 45 138-182 375-423 (686)
360 COG0572 Udk Uridine kinase [Nu 94.5 0.035 7.5E-07 56.2 3.8 28 158-185 8-35 (218)
361 PRK06547 hypothetical protein; 94.5 0.046 9.9E-07 54.1 4.6 25 158-182 15-39 (172)
362 cd03228 ABCC_MRP_Like The MRP 94.5 0.14 3.1E-06 50.8 8.2 120 158-288 28-167 (171)
363 cd03222 ABC_RNaseL_inhibitor T 94.4 0.14 3E-06 51.0 7.9 114 158-289 25-146 (177)
364 cd00227 CPT Chloramphenicol (C 94.4 0.038 8.2E-07 55.1 3.8 27 158-184 2-28 (175)
365 PF07728 AAA_5: AAA domain (dy 94.4 0.035 7.6E-07 52.9 3.4 22 161-182 2-23 (139)
366 TIGR01650 PD_CobS cobaltochela 94.4 0.078 1.7E-06 57.5 6.3 51 137-187 43-93 (327)
367 KOG0739 AAA+-type ATPase [Post 94.4 2 4.3E-05 45.1 15.9 48 137-184 131-192 (439)
368 cd02028 UMPK_like Uridine mono 94.4 0.049 1.1E-06 54.5 4.5 26 160-185 1-26 (179)
369 cd01122 GP4d_helicase GP4d_hel 94.3 0.37 8.1E-06 51.8 11.7 36 158-193 30-66 (271)
370 PRK08972 fliI flagellum-specif 94.3 0.1 2.3E-06 58.8 7.4 86 158-249 162-265 (444)
371 TIGR00235 udk uridine kinase. 94.3 0.035 7.5E-07 57.1 3.5 26 158-183 6-31 (207)
372 TIGR02782 TrbB_P P-type conjug 94.3 0.14 3.1E-06 55.6 8.4 95 151-254 125-222 (299)
373 TIGR02858 spore_III_AA stage I 94.3 0.1 2.2E-06 55.6 7.1 113 158-276 111-231 (270)
374 TIGR00390 hslU ATP-dependent p 94.3 0.048 1E-06 60.8 4.5 48 139-186 12-75 (441)
375 cd00544 CobU Adenosylcobinamid 94.3 0.33 7E-06 47.9 10.0 77 160-245 1-82 (169)
376 TIGR01351 adk adenylate kinase 94.3 0.18 3.9E-06 51.9 8.6 22 161-182 2-23 (210)
377 TIGR01360 aden_kin_iso1 adenyl 94.3 0.038 8.3E-07 55.7 3.6 25 158-182 3-27 (188)
378 cd01135 V_A-ATPase_B V/A-type 94.2 0.25 5.5E-06 52.2 9.6 89 158-250 69-180 (276)
379 COG0055 AtpD F0F1-type ATP syn 94.2 0.12 2.5E-06 55.7 7.0 99 158-260 147-269 (468)
380 PRK00889 adenylylsulfate kinas 94.2 0.054 1.2E-06 54.0 4.5 35 158-192 4-38 (175)
381 PF01078 Mg_chelatase: Magnesi 94.2 0.063 1.4E-06 54.1 4.8 43 138-180 2-44 (206)
382 cd01130 VirB11-like_ATPase Typ 94.2 0.084 1.8E-06 53.2 5.9 96 151-255 18-119 (186)
383 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.14 3E-06 58.1 8.0 88 158-249 138-245 (449)
384 PRK05201 hslU ATP-dependent pr 94.2 0.059 1.3E-06 60.1 5.0 49 138-186 14-78 (443)
385 TIGR00150 HI0065_YjeE ATPase, 94.1 0.079 1.7E-06 49.6 5.1 32 151-182 15-46 (133)
386 COG0714 MoxR-like ATPases [Gen 94.1 0.06 1.3E-06 59.7 5.1 54 138-191 23-76 (329)
387 PRK00279 adk adenylate kinase; 94.1 0.24 5.3E-06 51.2 9.3 23 160-182 2-24 (215)
388 PRK13949 shikimate kinase; Pro 94.1 0.043 9.2E-07 54.3 3.5 25 159-183 2-26 (169)
389 TIGR00708 cobA cob(I)alamin ad 94.1 0.35 7.6E-06 47.5 9.7 112 159-275 6-141 (173)
390 cd01857 HSR1_MMR1 HSR1/MMR1. 94.1 0.44 9.5E-06 45.5 10.3 52 8-61 2-53 (141)
391 TIGR02237 recomb_radB DNA repa 94.1 0.064 1.4E-06 55.2 4.8 37 158-194 12-48 (209)
392 PF03205 MobB: Molybdopterin g 94.1 0.082 1.8E-06 50.4 5.1 35 159-193 1-36 (140)
393 cd03237 ABC_RNaseL_inhibitor_d 94.1 0.2 4.4E-06 52.9 8.7 25 158-182 25-49 (246)
394 PF03969 AFG1_ATPase: AFG1-lik 94.1 0.12 2.7E-06 57.4 7.3 101 158-274 62-167 (362)
395 PF08423 Rad51: Rad51; InterP 94.0 0.17 3.6E-06 53.7 8.0 33 149-181 25-61 (256)
396 PRK03846 adenylylsulfate kinas 94.0 0.067 1.4E-06 54.5 4.8 36 158-193 24-59 (198)
397 PRK08506 replicative DNA helic 94.0 0.41 8.9E-06 55.7 11.7 70 141-217 172-244 (472)
398 TIGR00416 sms DNA repair prote 94.0 0.24 5.2E-06 57.1 9.6 46 148-193 80-129 (454)
399 PRK13948 shikimate kinase; Pro 93.9 0.049 1.1E-06 54.4 3.5 26 158-183 10-35 (182)
400 PRK11823 DNA repair protein Ra 93.9 0.3 6.5E-06 56.3 10.4 46 148-193 66-115 (446)
401 cd03230 ABC_DR_subfamily_A Thi 93.9 0.17 3.6E-06 50.4 7.4 122 158-288 26-168 (173)
402 PF10236 DAP3: Mitochondrial r 93.9 1.3 2.9E-05 48.3 14.9 48 285-332 258-306 (309)
403 PF00437 T2SE: Type II/IV secr 93.9 0.045 9.7E-07 58.9 3.4 121 139-272 104-230 (270)
404 PRK04301 radA DNA repair and r 93.9 0.28 6E-06 54.1 9.7 45 149-193 89-143 (317)
405 cd02024 NRK1 Nicotinamide ribo 93.9 0.041 8.9E-07 55.1 2.8 23 160-182 1-23 (187)
406 PRK13765 ATP-dependent proteas 93.9 0.081 1.7E-06 63.1 5.7 58 137-194 29-87 (637)
407 PRK05022 anaerobic nitric oxid 93.9 0.15 3.3E-06 60.1 8.0 46 138-183 186-235 (509)
408 cd02020 CMPK Cytidine monophos 93.9 0.046 9.9E-07 52.5 3.1 23 160-182 1-23 (147)
409 KOG1970 Checkpoint RAD17-RFC c 93.8 0.12 2.6E-06 58.4 6.6 38 145-182 88-134 (634)
410 KOG1051 Chaperone HSP104 and r 93.8 0.3 6.5E-06 59.6 10.4 98 139-249 562-673 (898)
411 cd00464 SK Shikimate kinase (S 93.8 0.05 1.1E-06 52.8 3.3 22 161-182 2-23 (154)
412 PHA02244 ATPase-like protein 93.8 0.2 4.2E-06 55.2 8.0 48 138-185 95-146 (383)
413 COG1936 Predicted nucleotide k 93.8 0.046 9.9E-07 52.7 2.8 20 160-179 2-21 (180)
414 cd03246 ABCC_Protease_Secretio 93.8 0.26 5.7E-06 48.9 8.5 121 158-288 28-168 (173)
415 PRK06995 flhF flagellar biosyn 93.8 0.57 1.2E-05 53.9 12.1 28 158-185 256-283 (484)
416 COG1428 Deoxynucleoside kinase 93.8 0.052 1.1E-06 54.2 3.2 26 158-183 4-29 (216)
417 cd02025 PanK Pantothenate kina 93.8 0.045 9.7E-07 56.7 3.0 25 160-184 1-25 (220)
418 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.28 6E-06 51.2 8.6 58 226-286 147-210 (254)
419 PRK13946 shikimate kinase; Pro 93.7 0.057 1.2E-06 54.3 3.5 26 158-183 10-35 (184)
420 PRK13543 cytochrome c biogenes 93.7 0.4 8.7E-06 49.5 9.9 24 158-181 37-60 (214)
421 PRK14526 adenylate kinase; Pro 93.7 0.24 5.2E-06 50.9 8.1 22 161-182 3-24 (211)
422 cd02023 UMPK Uridine monophosp 93.6 0.05 1.1E-06 55.5 3.0 23 160-182 1-23 (198)
423 cd00983 recA RecA is a bacter 93.6 0.13 2.8E-06 56.0 6.3 36 158-193 55-90 (325)
424 PF06068 TIP49: TIP49 C-termin 93.6 0.1 2.2E-06 56.8 5.3 55 137-191 22-83 (398)
425 cd02021 GntK Gluconate kinase 93.6 0.051 1.1E-06 52.6 2.9 23 160-182 1-23 (150)
426 CHL00206 ycf2 Ycf2; Provisiona 93.6 0.55 1.2E-05 61.2 12.4 25 158-182 1630-1654(2281)
427 PRK14528 adenylate kinase; Pro 93.6 0.25 5.4E-06 49.7 8.0 24 159-182 2-25 (186)
428 COG0703 AroK Shikimate kinase 93.5 0.063 1.4E-06 52.3 3.3 28 159-186 3-30 (172)
429 TIGR00764 lon_rel lon-related 93.5 0.12 2.6E-06 61.9 6.4 58 138-195 17-75 (608)
430 cd00071 GMPK Guanosine monopho 93.5 0.051 1.1E-06 51.7 2.7 26 160-185 1-26 (137)
431 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.055 1.2E-06 55.8 3.1 23 158-180 29-51 (213)
432 KOG0726 26S proteasome regulat 93.5 0.087 1.9E-06 54.6 4.3 51 137-187 183-248 (440)
433 TIGR02322 phosphon_PhnN phosph 93.5 0.062 1.3E-06 53.8 3.3 25 159-183 2-26 (179)
434 PHA02774 E1; Provisional 93.5 0.31 6.7E-06 56.5 9.1 38 146-183 419-459 (613)
435 PF03266 NTPase_1: NTPase; In 93.4 0.094 2E-06 51.7 4.4 24 161-184 2-25 (168)
436 PF13504 LRR_7: Leucine rich r 93.4 0.047 1E-06 31.2 1.3 16 718-733 2-17 (17)
437 PRK06851 hypothetical protein; 93.4 0.22 4.8E-06 55.1 7.7 49 142-193 200-250 (367)
438 PRK14530 adenylate kinase; Pro 93.4 0.068 1.5E-06 55.3 3.5 24 159-182 4-27 (215)
439 TIGR02902 spore_lonB ATP-depen 93.3 0.12 2.6E-06 61.0 5.9 46 137-182 63-110 (531)
440 PRK13975 thymidylate kinase; P 93.3 0.07 1.5E-06 54.3 3.5 26 159-184 3-28 (196)
441 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.11 2.4E-06 50.7 4.8 120 158-288 25-153 (157)
442 PRK05057 aroK shikimate kinase 93.3 0.072 1.6E-06 52.9 3.5 26 158-183 4-29 (172)
443 COG1102 Cmk Cytidylate kinase 93.3 0.069 1.5E-06 50.8 3.0 24 160-183 2-25 (179)
444 COG2884 FtsE Predicted ATPase 93.3 0.24 5.3E-06 48.5 6.8 53 226-280 145-203 (223)
445 PF13306 LRR_5: Leucine rich r 93.2 0.15 3.3E-06 47.6 5.5 64 488-555 3-66 (129)
446 COG0396 sufC Cysteine desulfur 93.2 0.61 1.3E-05 47.3 9.7 60 226-287 152-217 (251)
447 CHL00060 atpB ATP synthase CF1 93.2 0.43 9.4E-06 54.6 9.8 54 158-214 161-214 (494)
448 PRK11388 DNA-binding transcrip 93.1 0.71 1.5E-05 56.3 12.4 46 137-182 323-372 (638)
449 TIGR03324 alt_F1F0_F1_al alter 93.1 0.42 9.2E-06 54.8 9.6 87 158-249 162-267 (497)
450 PRK08927 fliI flagellum-specif 93.1 0.25 5.5E-06 56.0 7.8 86 158-249 158-261 (442)
451 TIGR02788 VirB11 P-type DNA tr 93.1 0.15 3.3E-06 55.8 6.0 92 158-254 144-236 (308)
452 PRK14493 putative bifunctional 93.1 0.12 2.6E-06 55.2 4.9 35 159-194 2-36 (274)
453 TIGR02238 recomb_DMC1 meiotic 93.1 0.45 9.8E-06 52.0 9.5 45 149-193 83-137 (313)
454 PRK12339 2-phosphoglycerate ki 93.0 0.078 1.7E-06 53.7 3.3 25 158-182 3-27 (197)
455 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.15 3.2E-06 54.4 5.5 36 158-193 36-71 (259)
456 PF00625 Guanylate_kin: Guanyl 93.0 0.1 2.2E-06 52.4 4.1 34 158-191 2-35 (183)
457 PRK14529 adenylate kinase; Pro 93.0 0.34 7.4E-06 50.0 7.9 88 160-254 2-95 (223)
458 PRK03731 aroL shikimate kinase 92.9 0.088 1.9E-06 52.2 3.5 25 159-183 3-27 (171)
459 PRK05342 clpX ATP-dependent pr 92.9 0.13 2.8E-06 58.4 5.1 47 140-186 72-136 (412)
460 COG3640 CooC CO dehydrogenase 92.9 0.15 3.2E-06 51.7 4.9 35 160-194 2-36 (255)
461 CHL00059 atpA ATP synthase CF1 92.9 0.43 9.4E-06 54.5 9.2 87 158-249 141-246 (485)
462 KOG0730 AAA+-type ATPase [Post 92.9 0.56 1.2E-05 54.5 10.0 167 139-328 184-385 (693)
463 PRK09354 recA recombinase A; P 92.9 0.16 3.5E-06 55.8 5.6 45 149-193 46-95 (349)
464 TIGR02768 TraA_Ti Ti-type conj 92.9 0.5 1.1E-05 58.2 10.5 28 158-185 368-395 (744)
465 TIGR02533 type_II_gspE general 92.8 0.21 4.5E-06 58.2 6.8 100 146-255 229-330 (486)
466 TIGR02525 plasmid_TraJ plasmid 92.8 0.32 6.9E-06 54.3 8.0 96 157-257 148-246 (372)
467 PRK04220 2-phosphoglycerate ki 92.8 0.17 3.8E-06 54.2 5.6 25 158-182 92-116 (301)
468 COG3910 Predicted ATPase [Gene 92.8 1.3 2.8E-05 43.5 10.8 62 226-289 137-202 (233)
469 TIGR00176 mobB molybdopterin-g 92.8 0.13 2.8E-06 50.0 4.4 26 160-185 1-26 (155)
470 COG0305 DnaB Replicative DNA h 92.8 0.75 1.6E-05 51.9 10.8 100 141-249 176-290 (435)
471 TIGR01313 therm_gnt_kin carboh 92.8 0.07 1.5E-06 52.4 2.5 22 161-182 1-22 (163)
472 PRK08840 replicative DNA helic 92.8 2.6 5.7E-05 48.8 15.6 70 141-217 197-270 (464)
473 PRK06936 type III secretion sy 92.7 0.37 8E-06 54.6 8.4 87 158-250 162-266 (439)
474 PRK10751 molybdopterin-guanine 92.7 0.16 3.4E-06 50.1 4.8 28 158-185 6-33 (173)
475 COG1875 NYN ribonuclease and A 92.7 0.33 7.2E-06 52.4 7.5 34 237-273 352-387 (436)
476 PF03308 ArgK: ArgK protein; 92.7 0.29 6.3E-06 50.8 6.8 43 158-201 29-71 (266)
477 COG1224 TIP49 DNA helicase TIP 92.7 0.17 3.8E-06 54.1 5.3 53 137-189 37-96 (450)
478 PRK08154 anaerobic benzoate ca 92.6 0.13 2.8E-06 56.4 4.5 25 158-182 133-157 (309)
479 cd03287 ABC_MSH3_euk MutS3 hom 92.6 0.09 2E-06 54.3 3.1 23 158-180 31-53 (222)
480 PRK04182 cytidylate kinase; Pr 92.6 0.097 2.1E-06 52.3 3.3 24 160-183 2-25 (180)
481 PRK05986 cob(I)alamin adenolsy 92.6 0.73 1.6E-05 46.0 9.3 113 158-275 22-159 (191)
482 TIGR03263 guanyl_kin guanylate 92.6 0.087 1.9E-06 52.7 2.9 24 159-182 2-25 (180)
483 PF13245 AAA_19: Part of AAA d 92.6 0.2 4.4E-06 42.0 4.6 24 157-180 9-32 (76)
484 TIGR00962 atpA proton transloc 92.6 0.49 1.1E-05 54.8 9.3 87 158-249 161-266 (501)
485 PF08298 AAA_PrkA: PrkA AAA do 92.6 0.15 3.2E-06 55.5 4.7 48 138-185 60-115 (358)
486 PRK05439 pantothenate kinase; 92.5 0.16 3.4E-06 55.1 4.9 27 158-184 86-112 (311)
487 PRK06731 flhF flagellar biosyn 92.5 1.1 2.5E-05 47.6 11.3 36 158-193 75-110 (270)
488 COG0468 RecA RecA/RadA recombi 92.5 0.36 7.9E-06 51.3 7.6 38 158-195 60-97 (279)
489 TIGR01041 ATP_syn_B_arch ATP s 92.5 0.43 9.2E-06 54.6 8.6 89 158-249 141-251 (458)
490 PRK08006 replicative DNA helic 92.5 2.9 6.2E-05 48.6 15.5 69 141-216 204-276 (471)
491 COG1120 FepC ABC-type cobalami 92.5 0.36 7.8E-06 50.6 7.3 24 158-181 28-51 (258)
492 PRK09281 F0F1 ATP synthase sub 92.5 0.51 1.1E-05 54.6 9.3 87 158-249 162-267 (502)
493 cd03217 ABC_FeS_Assembly ABC-t 92.5 0.32 6.9E-06 49.7 7.0 24 158-181 26-49 (200)
494 smart00534 MUTSac ATPase domai 92.5 0.05 1.1E-06 54.8 1.0 21 160-180 1-21 (185)
495 PRK13768 GTPase; Provisional 92.5 0.16 3.4E-06 54.0 4.8 34 159-192 3-36 (253)
496 cd01983 Fer4_NifH The Fer4_Nif 92.5 0.15 3.2E-06 44.7 4.0 25 160-184 1-25 (99)
497 PTZ00494 tuzin-like protein; P 92.4 7 0.00015 43.8 17.1 156 137-303 369-543 (664)
498 cd03233 ABC_PDR_domain1 The pl 92.4 0.59 1.3E-05 47.8 8.9 26 158-183 33-58 (202)
499 COG0467 RAD55 RecA-superfamily 92.4 0.37 7.9E-06 51.5 7.7 36 158-193 23-58 (260)
500 cd02034 CooC The accessory pro 92.4 0.19 4.1E-06 46.1 4.7 33 161-193 2-34 (116)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-127 Score=1217.14 Aligned_cols=891 Identities=33% Similarity=0.523 Sum_probs=730.7
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCCccccccCchhhHHHHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPSDLRNQSGTFGDSYLKLE 80 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~ 80 (945)
++||+.|+++|++|||+|||||||||+|||+|+||||||++||||+++++++|+||||+|||+|||+|+|+||+||++++
T Consensus 49 ~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~ 128 (1153)
T PLN03210 49 IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTC 128 (1153)
T ss_pred ccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhchhhHHhHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc---
Q 041079 81 ERFKENSKKLQSWRNALKEAAGLSGFYSQNFRPESELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--- 157 (945)
Q Consensus 81 ~~~~~~~~~~~~w~~aL~~~~~~~g~~~~~~~~e~~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--- 157 (945)
++ ...+++++||+||++||+++||++..+++|+++|++||++|.+++..+++. +.+++|||+++++++..+|..
T Consensus 129 ~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~-~~~~~vG~~~~l~~l~~lL~l~~~ 205 (1153)
T PLN03210 129 QN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSN-DFEDFVGIEDHIAKMSSLLHLESE 205 (1153)
T ss_pred cc--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCc-ccccccchHHHHHHHHHHHccccC
Confidence 75 356789999999999999999999889999999999999999999988877 889999999999999999864
Q ss_pred -cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEec--hhhh---h-----ccCCHHHHHHHHHHHHhCCCCc-cCC
Q 041079 158 -APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENV--REES---Q-----RSGGLACLRQELLSKLLKHENV-ILD 225 (945)
Q Consensus 158 -~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~s---~-----~~~~l~~l~~~ll~~l~~~~~~-~~~ 225 (945)
+++|+||||||+||||||+++|+++..+|++.+|+.+. .... . .......++++++.++...... ...
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 89999999999999999999999999999999998642 1110 0 0011345677777777665442 223
Q ss_pred HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 226 IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
...++++++++|+||||||||+.++|+.+.....|+++||+||||||+++++..++++++|+|+.|+++||++||+++||
T Consensus 286 ~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 286 LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 67789999999999999999999999999998899999999999999999998888889999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHHHHHHHHHHHhccCcchhhhhhhhccCCCh-hhHhhhhhh
Q 041079 306 KQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDD-NEKNIFLDV 384 (945)
Q Consensus 306 ~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~-~~k~~fl~~ 384 (945)
++..+++++.+++++|+++|+|+||||+++|++|++++..+|+.+++++++.++.+|.++|++||++|++ .+|.||+++
T Consensus 366 ~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~i 445 (1153)
T PLN03210 366 KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHI 445 (1153)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhee
Confidence 9888888899999999999999999999999999999999999999999998888999999999999976 599999999
Q ss_pred cccCCCCChHHHHHHhhhcCCCcccchHHHHhcccceecCCEEehhHHHHHHHHHHHhhccCCCCcccccccchhhhhhh
Q 041079 385 ACFFKGEDVYPVMKFLDASGFYPTTGISVLVDKSLIAISYNKIMMHDLLQELGREIVRQESINPRNRSRLWHHEDIYEVL 464 (945)
Q Consensus 385 a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~~~~~~~mHdli~~~~~~i~~~e~~~~~~~s~l~~~~d~~~~l 464 (945)
||||.+.+++.+..+++.+++.++.+++.|+++|||++..+++.|||++|+||++++++++.+|++|+++|+++|+++++
T Consensus 446 a~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl 525 (1153)
T PLN03210 446 ACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL 525 (1153)
T ss_pred hhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred hhccCcccccccccccccceeeccCchhhccCcCccccccccccCC------CCCccccc--------------------
Q 041079 465 KYNMGTEKIEGICLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSIN------GENKCKQQ-------------------- 518 (945)
Q Consensus 465 ~~~~~~~~i~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~------~~~~~~~~-------------------- 518 (945)
..++|+.++++|.+|++...+..+...+|.+|++|++|.++++... ..+|.++.
T Consensus 526 ~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP 605 (1153)
T PLN03210 526 EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP 605 (1153)
T ss_pred HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999765321 11111121
Q ss_pred ---cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEeecCC-CCcccCccccCCcc
Q 041079 519 ---HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGT-AIEELPSSVGCLSG 594 (945)
Q Consensus 519 ---~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~ 594 (945)
.+.+|+.|++++|+ +... +..+..+++|+.|+|++|..+..+|.+..+++|++|+|++| .+..+|.+++++++
T Consensus 606 ~~f~~~~L~~L~L~~s~-l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 606 SNFRPENLVKLQMQGSK-LEKL--WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CcCCccCCcEEECcCcc-cccc--ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCC
Confidence 23566667776654 3322 23456788999999999988899999889999999999986 46789999999999
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC------------------
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV------------------ 656 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l------------------ 656 (945)
|+.|++++|..++.+|..+ ++++|++|++++|+.++.+|... .+|++|++++|.+..+
T Consensus 683 L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCeeecCCCccccccccccccccccccccccc
Confidence 9999999999999999876 89999999999998887777542 2344555555544444
Q ss_pred ------------------------------------CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEe
Q 041079 657 ------------------------------------PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLC 700 (945)
Q Consensus 657 ------------------------------------p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 700 (945)
|.+++++++|+.|++++|..+..+| ..+ ++++|+.|+
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP------~~~-~L~sL~~L~ 831 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP------TGI-NLESLESLD 831 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC------CCC-CccccCEEE
Confidence 4444444555555555444333221 111 345555555
Q ss_pred ccCCCCC-ccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcc---cccceEeeccCccccc
Q 041079 701 LHNCGVT-RLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELP---CNLILLYADHCTVLKS 776 (945)
Q Consensus 701 L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~L~~ 776 (945)
|++|... .+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|+.+..+|..+ ++|+.|++++|++|..
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 5554322 3332 2357888888889999999999999999999999999999998754 5677889999998875
Q ss_pred ccC----------------------------cccce-----------eeeecCCCCCCCCccccccCceEE-EEeccccC
Q 041079 777 ISG----------------------------LSALE-----------GYVILPGNEIPKWFRFQSVGSSSS-ITLEMLAA 816 (945)
Q Consensus 777 l~~----------------------------l~~l~-----------~~~~~p~~~iP~wf~~~~~g~~~~-~~l~~~~~ 816 (945)
++- +..|. ..+++||.++|.||.|++.|++++ |.+ |+
T Consensus 909 ~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l---~~ 985 (1153)
T PLN03210 909 ASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPL---LH 985 (1153)
T ss_pred ccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeecc---CC
Confidence 431 00110 346899999999999999999998 999 99
Q ss_pred CccCCCcceeEEEEEEEEeecC-----ceeEEEEEEEeecCCCCCCCeEEecccccCCCCCCeEEEEEecccccc---cc
Q 041079 817 GCFNKNRIIGFAFSAIVAFCVK-----RLTAKLFCEFKFKPKDRDPHVIETSFQLFTDVESDHILLGYYFFREED---FN 888 (945)
Q Consensus 817 ~~~~~~~~~g~~~c~v~~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~---~~ 888 (945)
.|+ ...+.||++|+|+++... .+.++|.|+++.+.|+... .+.++|+|+.|....++. ..
T Consensus 986 ~~~-~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~ 1053 (1153)
T PLN03210 986 ISP-CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD-----------SPYQPHVFSVTKKGSHLVIFDCC 1053 (1153)
T ss_pred ccc-CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc-----------cCCCceeEeeeccccceEEeccc
Confidence 998 678999999999987652 3457888877665543211 134566666655432221 00
Q ss_pred c--------CCcCCCCCceEEEEEEeecccccccceeEEeeeeEEEeeCCC
Q 041079 889 I--------LPEYYCSLEAVQFYFKEAFCFERLECCGVKKCGIHLFHSPDP 931 (945)
Q Consensus 889 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cg~~~~~~~~~ 931 (945)
. .....|.| ++++|...+... .++||+|||+++|+.+.
T Consensus 1054 ~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~---~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1054 FPLNEDNAPLAELNYDH--VDIQFRLTNKNS---QLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred ccccccccchhccCCce--eeEEEEEecCCC---CeEEEeeeEEEeccCCC
Confidence 0 00123555 677776544222 35999999999996553
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-60 Score=570.85 Aligned_cols=450 Identities=28% Similarity=0.396 Sum_probs=365.7
Q ss_pred cchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHH---hhccccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 142 VGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDK---ISSDFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
||.+..++++.+.|.. .+++||+||||+||||||+.++|+ +..+|+.++|+. +|.. +....++++++..+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHHHh
Confidence 9999999999999987 789999999999999999999984 678999999997 3445 88999999999988
Q ss_pred hCCCCccCC------HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcccccc-CCcceEEEcC
Q 041079 217 LKHENVILD------IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRN-CSVKEIYEMK 289 (945)
Q Consensus 217 ~~~~~~~~~------~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~l~ 289 (945)
+.......+ ...+.+.|++||++|||||||+..+|+.+..+++....||+|++|||++.|+.. +++...++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 775443222 677888999999999999999999999999999988889999999999999998 8888899999
Q ss_pred CCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCcchHHHhhccccC-CCHHHHHHHHHHHHhc-----c--Cc
Q 041079 290 ELRDDHALELFSRHAFKQN-HPDVGYEELSSRVIQYAQGVPLALEILGCSLFE-KEKEVWESAINKLKRF-----L--HP 360 (945)
Q Consensus 290 ~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~-~~~~~w~~~l~~l~~~-----~--~~ 360 (945)
.|+++|||+||++.||... ...+...++|++++++|+|+|||+.++|+.|+. .+..+|+.+.+.+... + .+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999998763 333558999999999999999999999999987 5678999999988765 1 35
Q ss_pred chhhhhhhhccCCChhhHhhhhhhcccCCCCCh--HHHHHHhhhcCCCcc------------cchHHHHhcccceecC--
Q 041079 361 SIQEVLKVSYDGLDDNEKNIFLDVACFFKGEDV--YPVMKFLDASGFYPT------------TGISVLVDKSLIAISY-- 424 (945)
Q Consensus 361 ~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~--~~l~~~~~~~g~~~~------------~~i~~L~~~sLi~~~~-- 424 (945)
.|..++++|||.|+++.|.||+|||.||+++.+ +.++..|+|+||+.. ..+.+|++++|+....
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 688999999999999999999999999999965 679999999997643 2389999999999874
Q ss_pred ---CEEehhHHHHHHHHHHHhhccCCCCcccccccchhhhhhhhhccCcccccccccccccceeeccCchhhccCcCccc
Q 041079 425 ---NKIMMHDLLQELGREIVRQESINPRNRSRLWHHEDIYEVLKYNMGTEKIEGICLDMSKVKEMHLNSDTFTKMPKLRF 501 (945)
Q Consensus 425 ---~~~~mHdli~~~~~~i~~~e~~~~~~~s~l~~~~d~~~~l~~~~~~~~i~~i~l~~~~~~~~~l~~~~f~~~~~Lr~ 501 (945)
..+.|||++|+||.+++++...+..+ . +.....+...+ .........|.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~--~---------iv~~~~~~~~~-----------------~~~~~~~~~rr 527 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEEN--Q---------IVSDGVGLSEI-----------------PQVKSWNSVRR 527 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccc--e---------EEECCcCcccc-----------------ccccchhheeE
Confidence 78999999999999999854311100 0 00000000000 00111133444
Q ss_pred cccccccCCCCCccccccCcceeEEEecCCcC-CccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecC
Q 041079 502 LKFYRSSINGENKCKQQHHGKLKQIIISAGNF-FTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSG 579 (945)
Q Consensus 502 L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~-l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~ 579 (945)
..+.++.+.... .-..+++|+.|-+..|.. +..++ ...+..++.|++|||++|..+..+| .+++|.+||||+|++
T Consensus 528 ~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 528 MSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred EEEeccchhhcc--CCCCCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 444444433221 223445788888877753 33322 2347789999999999999999999 577799999999999
Q ss_pred CCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCC
Q 041079 580 TAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRC 627 (945)
Q Consensus 580 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~ 627 (945)
+.|..+|.++++|++|.+||+..+..+..+|..+..|++|++|.+..-
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999999999999999999999999888888877777999999999753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-36 Score=332.13 Aligned_cols=260 Identities=27% Similarity=0.450 Sum_probs=207.1
Q ss_pred hHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHH--hhccccceEEEEechhhhhccCCHHHHHHHHHHHHh
Q 041079 144 VESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDK--ISSDFEGSCFLENVREESQRSGGLACLRQELLSKLL 217 (945)
Q Consensus 144 r~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~ 217 (945)
||.++++|.+.|.. .++|+|+||||+||||||++++++ ++.+|+.++|+..... .....+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 78899999888876 899999999999999999999987 8899999999874322 445788888998888
Q ss_pred CCCCcc---CC----HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccccccCCc-ceEEEcC
Q 041079 218 KHENVI---LD----IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSV-KEIYEMK 289 (945)
Q Consensus 218 ~~~~~~---~~----~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~ 289 (945)
...... .+ ...+.+.|.++++||||||||+...|+.+...++.+..|++||||||++.++..++. ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 774422 22 688888999999999999999999999988877777789999999999998876644 6799999
Q ss_pred CCCHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCCcchHHHhhccccC-CCHHHHHHHHHHHHhcc------Ccc
Q 041079 290 ELRDDHALELFSRHAFKQN-HPDVGYEELSSRVIQYAQGVPLALEILGCSLFE-KEKEVWESAINKLKRFL------HPS 361 (945)
Q Consensus 290 ~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~-~~~~~w~~~l~~l~~~~------~~~ 361 (945)
+|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+..++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998655 334455678999999999999999999999954 36788999998877644 366
Q ss_pred hhhhhhhhccCCChhhHhhhhhhcccCCCCC--hHHHHHHhhhcCCCcc
Q 041079 362 IQEVLKVSYDGLDDNEKNIFLDVACFFKGED--VYPVMKFLDASGFYPT 408 (945)
Q Consensus 362 i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~ 408 (945)
+..++.+||+.|+++.|.||++||+||.+.. .+.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 8999999999999999999999999999876 6789999999998754
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=99.97 E-value=7e-31 Score=250.45 Aligned_cols=114 Identities=33% Similarity=0.523 Sum_probs=103.1
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCCccccc-cCchhhHHHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPSDLRNQ-SGTFGDSYLKL 79 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q-~g~~~~~~~~~ 79 (945)
+++|+.|.++|.+||++|+++|||||++||+|+|||+||++|++|+ +.|+||||+|||+|||+| .|..
T Consensus 64 l~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~------- 132 (187)
T PLN03194 64 MKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC------- 132 (187)
T ss_pred ccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC-------
Confidence 5789999999999999999999999999999999999999999984 479999999999999997 5431
Q ss_pred HHHhhhchhhHHhHHHHHHHHhcccccccCC-CCCHHHHHHHHHHHHHhhccc
Q 041079 80 EERFKENSKKLQSWRNALKEAAGLSGFYSQN-FRPESELIKEVLNQILKRLAE 131 (945)
Q Consensus 80 ~~~~~~~~~~~~~w~~aL~~~~~~~g~~~~~-~~~e~~~i~~i~~~i~~~l~~ 131 (945)
..+++++||+||++||+++|+++.. .++|+++|++|++.|.++|-.
T Consensus 133 ------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 133 ------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred ------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999997753 688999999999999998754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2e-26 Score=293.48 Aligned_cols=318 Identities=22% Similarity=0.281 Sum_probs=239.9
Q ss_pred CCCCcccccccchhhhhhhhhccCcccccccccccccceeeccCchhhccCcCccccccccccCCCCCcccc-ccCccee
Q 041079 446 INPRNRSRLWHHEDIYEVLKYNMGTEKIEGICLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQ-QHHGKLK 524 (945)
Q Consensus 446 ~~~~~~s~l~~~~d~~~~l~~~~~~~~i~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~-~~l~~L~ 524 (945)
.+|.++.+.|...+.+...........-+...+|++.+......+..|..+++|+.|++++|.+.+.+|..+ ..+.+|+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 356667778875443333222222222233456666555444557789999999999999999987777654 4899999
Q ss_pred EEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCc-ccCccccCCccccEEeccc
Q 041079 525 QIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQA 602 (945)
Q Consensus 525 ~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~ 602 (945)
+|+|++|+.....|. ..+++|++|+|++|.....+| .+.++++|++|+|++|.+. .+|.+++++++|++|+|++
T Consensus 122 ~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 122 YLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred EEECcCCccccccCc----cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 999998876544442 457788999999998877777 5778999999999999886 7888899999999999999
Q ss_pred cccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCc-cCCccccCCCCCcEEEcccCCCCccCc
Q 041079 603 CKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASS-EVPSSIVRSNNFRFLSFRESRGDKQMG 681 (945)
Q Consensus 603 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~ 681 (945)
|...+.+|..++++++|++|+|++|...+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---- 273 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS---- 273 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee----
Confidence 9888888988999999999999999888889998999999999999988854 67888889999999999888643
Q ss_pred cccccccccCCCCCCCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCcccCCc
Q 041079 682 LSLLISLSSDGLHSLKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSLPEL 759 (945)
Q Consensus 682 ~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l 759 (945)
...|..+.++++|+.|++++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|...+.+|..
T Consensus 274 --~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 274 --GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred --ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 234455666777888888877776 46777777777777777777776 56667777777777777777766666643
Q ss_pred ---ccccceEeeccCcc
Q 041079 760 ---PCNLILLYADHCTV 773 (945)
Q Consensus 760 ---~~~L~~L~~~~c~~ 773 (945)
.++|+.|++++|..
T Consensus 352 l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNL 368 (968)
T ss_pred HhCCCCCcEEECCCCee
Confidence 35566777766643
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.7e-24 Score=272.72 Aligned_cols=294 Identities=21% Similarity=0.275 Sum_probs=164.8
Q ss_pred ccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCC
Q 041079 479 DMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCK 558 (945)
Q Consensus 479 ~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 558 (945)
+++.+......+..|.++++|++|++++|.+.+.+|..+..+++|+.|+|++|+..... +..+.++++|++|+|++|.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI--PYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC--ChhHhcCCCCCEEECcCce
Confidence 34333333333445566666666666666665555555666666666666655443222 2334556666666666665
Q ss_pred CCCCCC-CccCCcccceEeecCCCCc-ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCc
Q 041079 559 GLKKLP-EISSLSNIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEE 636 (945)
Q Consensus 559 ~l~~lp-~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~ 636 (945)
..+.+| .+.++++|++|+|++|.+. .+|.++..+++|++|++++|...+.+|..+.++++|++|++++|...+.+|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 555555 4555666666666666654 45556666666666666666655556665666666666666666666666666
Q ss_pred cCCcccCccccccCCCCc-cCCccccCCCCCcEEEcccCCCCccCc------------------cccccccccCCCCCCC
Q 041079 637 IGNVEASNSLYAYGTASS-EVPSSIVRSNNFRFLSFRESRGDKQMG------------------LSLLISLSSDGLHSLK 697 (945)
Q Consensus 637 l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~------------------~~~~~~~~l~~l~~L~ 697 (945)
+..+++|+.|++++|.+. .+|..++.+++|+.|++++|......+ .....|..+..+++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 666666666666666543 455566666666666666654321111 0112233344455555
Q ss_pred EEeccCCCCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCcccCCc--ccccceEeeccCcc
Q 041079 698 SLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSLPEL--PCNLILLYADHCTV 773 (945)
Q Consensus 698 ~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~ 773 (945)
.|++++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+..+.+|.. .++|+.|++++|..
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 5555555555 34555555566666666666555 34444555666666666666655555543 24566666666654
Q ss_pred c
Q 041079 774 L 774 (945)
Q Consensus 774 L 774 (945)
.
T Consensus 488 ~ 488 (968)
T PLN00113 488 S 488 (968)
T ss_pred C
Confidence 3
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.1e-24 Score=234.20 Aligned_cols=277 Identities=23% Similarity=0.330 Sum_probs=202.5
Q ss_pred hccCcCccccccccccCCC-CCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--CccCC
Q 041079 493 FTKMPKLRFLKFYRSSING-ENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EISSL 569 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~-~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~~l 569 (945)
++.++.||.+.+..|++.. ++|..+-.+..|..||||+|+. .+. |..+.+-+++-+|+|++|+ +..+| -+.+|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~Ev--P~~LE~AKn~iVLNLS~N~-IetIPn~lfinL 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REV--PTNLEYAKNSIVLNLSYNN-IETIPNSLFINL 149 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhc--chhhhhhcCcEEEEcccCc-cccCCchHHHhh
Confidence 5567778888877777654 6677777788888888887753 333 3455566677778888775 44555 35567
Q ss_pred cccceEeecCCCCcccCccccCCccccEEecccccc----ccccCcccCCCCCCCEEeccCCCC-CCccCCccCCcccCc
Q 041079 570 SNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKM----LKSLPCSLFKLKSLEDLNLCRCSN-LRRFPEEIGNVEASN 644 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~----l~~lp~~i~~l~~L~~L~Ls~~~~-~~~lp~~l~~l~~L~ 644 (945)
+.|-+||||+|.++.+|+.+..|.+|++|+|++|.. +..+| .+++|++|.+++... +..+|..+..|.+|.
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 888888888888888888888888888888887763 23344 456677777766433 356777777777777
Q ss_pred cccccCCCCccCCccccCCCCCcEEEcccCCCCcc------------Ccc----ccccccccCCCCCCCEEeccCCCCC-
Q 041079 645 SLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQ------------MGL----SLLISLSSDGLHSLKSLCLHNCGVT- 707 (945)
Q Consensus 645 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~------------~~~----~~~~~~~l~~l~~L~~L~L~~~~l~- 707 (945)
.++++.|.+..+|..+.++.+|+.|+|++|...+- +.+ -..+|..+++++.|+.|.+.+|+++
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence 77777777777777777777777777777753211 000 1446777888888999998888877
Q ss_pred -ccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC---cccccceEeeccCccccccc
Q 041079 708 -RLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE---LPCNLILLYADHCTVLKSIS 778 (945)
Q Consensus 708 -~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~~~~c~~L~~l~ 778 (945)
.+|+.|+.+.+|+.+..++|++.-+|++++.|..|+.|.|++|. +-.+|+ +++.|+.|+++++++|---|
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCC
Confidence 68999999999999999999999999999999999999999876 556775 56889999999998886555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=5.6e-23 Score=223.16 Aligned_cols=262 Identities=22% Similarity=0.279 Sum_probs=192.6
Q ss_pred eccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC
Q 041079 486 MHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE 565 (945)
Q Consensus 486 ~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~ 565 (945)
..++++.| +|..|.+|++++|++.. .|..+....++-+|+||+|+. ..+| .+.+-+|..|-+|||++|+.-..+|.
T Consensus 93 sGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~I-etIP-n~lfinLtDLLfLDLS~NrLe~LPPQ 168 (1255)
T KOG0444|consen 93 SGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNI-ETIP-NSLFINLTDLLFLDLSNNRLEMLPPQ 168 (1255)
T ss_pred CCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCcc-ccCC-chHHHhhHhHhhhccccchhhhcCHH
Confidence 33433333 45666666666666543 333455555666666665542 2222 23444555566666665553333334
Q ss_pred ccCCcccceEeecCCCC--------------------------cccCccccCCccccEEeccccccccccCcccCCCCCC
Q 041079 566 ISSLSNIEKIILSGTAI--------------------------EELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSL 619 (945)
Q Consensus 566 ~~~l~~L~~L~Ls~~~i--------------------------~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 619 (945)
+..|.+|++|.|++|.+ ..+|.++..|.+|..+||+.|. +..+|..+.++++|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhh
Confidence 44555555555555432 2567788888888888888776 88888888888999
Q ss_pred CEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEE
Q 041079 620 EDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSL 699 (945)
Q Consensus 620 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 699 (945)
+.|+||+|.. +.+.-..+.-.+|++|+++.|.+..+|..+..++.|+.|.+.+|+.. -..+|+.++++.+|+.+
T Consensus 248 rrLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-----FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 248 RRLNLSGNKI-TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-----FEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred heeccCcCce-eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc-----ccCCccchhhhhhhHHH
Confidence 9999988654 45555666777889999999999999999999999999988888741 23478889999999999
Q ss_pred eccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC
Q 041079 700 CLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 700 ~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
...+|.+.-+|+.+..+..|+.|.|+.|++.++|+.|.-|+.|+.|||..|+.+..-|.
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999999999999999999999999999999999999999999999999998876654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=5.7e-20 Score=234.49 Aligned_cols=265 Identities=23% Similarity=0.318 Sum_probs=191.2
Q ss_pred CcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccce
Q 041079 496 MPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEK 574 (945)
Q Consensus 496 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~ 574 (945)
+.+|+.|++.++.+.. ++.++..+++|+.|+|++++.+..+|. +.++++|+.|+|++|..+..+| .+.++++|+.
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 3566666666665543 334456677777777777666665553 3445666666777776666666 4555677777
Q ss_pred EeecCC-CCcccCccccCCccccEEecccccccccc--------------------Cccc--------------------
Q 041079 575 IILSGT-AIEELPSSVGCLSGLVLLHLQACKMLKSL--------------------PCSL-------------------- 613 (945)
Q Consensus 575 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--------------------p~~i-------------------- 613 (945)
|++++| .++.+|..+ ++++|+.|++++|..++.+ |..+
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 777664 455666654 5666666666666544333 3221
Q ss_pred ----------CCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC-CccCCccccCCCCCcEEEcccCCCCccCcc
Q 041079 614 ----------FKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA-SSEVPSSIVRSNNFRFLSFRESRGDKQMGL 682 (945)
Q Consensus 614 ----------~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 682 (945)
...++|+.|+|++|.....+|..++++++|+.|++++|. ++.+|..+ ++++|+.|++++|..+...+
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p- 842 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP- 842 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-
Confidence 012467888888888888999999999999999999874 88888876 79999999999998654432
Q ss_pred ccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCC-CCcccchhhhCCCCCCEEeeccCCCCcccC--Cc
Q 041079 683 SLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRN-NFERVPESIIQLSKLNYLYLSYCQRLQSLP--EL 759 (945)
Q Consensus 683 ~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp--~l 759 (945)
. ..++|+.|+|++|.+.++|.++..+++|+.|+|++| ++..+|..+..+++|+.|++++|..+..++ ..
T Consensus 843 -----~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 843 -----D---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred -----c---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 1 246899999999999999999999999999999996 788999999999999999999999876543 21
Q ss_pred c--------------cccceEeeccCcccc
Q 041079 760 P--------------CNLILLYADHCTVLK 775 (945)
Q Consensus 760 ~--------------~~L~~L~~~~c~~L~ 775 (945)
| ++...+...+|.+|.
T Consensus 915 ~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 915 PSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred chhhhhhcccccccCCchhccccccccCCC
Confidence 1 222445677887765
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=9.5e-22 Score=212.97 Aligned_cols=273 Identities=19% Similarity=0.186 Sum_probs=147.8
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
+++..+.+..+.++.++-++.||.|+++.|.++......+..-.++++|+|++|...+ + ....+.++.+|..|.|+.|
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l-~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-L-ETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-c-ccccccccchheeeecccC
Confidence 4455555556666777777777777777777776666666666777777777665322 1 2234556667777777776
Q ss_pred CCCCCCC-CccCCcccceEeecCCCCccc-CccccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCccC
Q 041079 558 KGLKKLP-EISSLSNIEKIILSGTAIEEL-PSSVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRFP 634 (945)
Q Consensus 558 ~~l~~lp-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp 634 (945)
+.....+ .+.+|++|+.|+|..|.|... ...+..|++|+.|.|..|. +..+.+ .+..|.++++|+|+.|+...--.
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhc
Confidence 6443333 344477777777777766644 3345555555555555554 233322 23345555555555544433333
Q ss_pred CccCCcccCccccccCCCCccC-CccccCCCCCcEEEcccCCCCccCc------------------cccccccccCCCCC
Q 041079 635 EEIGNVEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGDKQMG------------------LSLLISLSSDGLHS 695 (945)
Q Consensus 635 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~------------------~~~~~~~~l~~l~~ 695 (945)
..+.++++|+.|+++.|.|..+ +.+...+++|+.|+|+.|....-.+ ....-...+.++++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 3444555555555555554443 2234444555555555554211100 11111122445556
Q ss_pred CCEEeccCCCCCc----cCcccCCCCCCCEEECCCCCCcccc-hhhhCCCCCCEEeeccCCCC
Q 041079 696 LKSLCLHNCGVTR----LPESLGRLSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 696 L~~L~L~~~~l~~----lp~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~l 753 (945)
|+.|+|++|.++- -...+..+++|+.|+|.||++..+| ..+..+..|+.|+|.+|..-
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 6666666665551 1223445666666666666666666 35556666666666666543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-21 Score=210.96 Aligned_cols=310 Identities=18% Similarity=0.180 Sum_probs=241.6
Q ss_pred hhhhhccCcccccccccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCC
Q 041079 462 EVLKYNMGTEKIEGICLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPS 541 (945)
Q Consensus 462 ~~l~~~~~~~~i~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~ 541 (945)
.-+..+....++.-..++++.+++..+....|..+.+|-+|.+++|+++...+..|+++++|+.|+|..|.. .+....
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i--rive~l 239 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI--RIVEGL 239 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce--eeehhh
Confidence 334444445556666788999999999999999999999999999999999999999999999999987753 233345
Q ss_pred CCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCC
Q 041079 542 FIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSL 619 (945)
Q Consensus 542 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 619 (945)
.+..|++|+.|.|..|...+.-. .+..|.++++|+|+.|++..+.+ ++-.|+.|+.|+|++|.....-+++....++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 57788888888999987544333 56679999999999999997765 57789999999999998666667778889999
Q ss_pred CEEeccCCCCCCccCCccCCcccCccccccCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCE
Q 041079 620 EDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKS 698 (945)
Q Consensus 620 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 698 (945)
++|+|++|....--+..+..+..|++|+|+.|.+..+.. .+..+++|+.|+|+.|....-.. .-...+.++++|+.
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE---Daa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE---DAAVAFNGLPSLRK 396 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe---cchhhhccchhhhh
Confidence 999999988776666778889999999999999988876 56788999999999987422111 12234678999999
Q ss_pred EeccCCCCCccCc-ccCCCCCCCEEECCCCCCccc-chhhhCCCCCCEEeecc------CCCCcccCCcc--cccceEee
Q 041079 699 LCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFERV-PESIIQLSKLNYLYLSY------CQRLQSLPELP--CNLILLYA 768 (945)
Q Consensus 699 L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~------c~~l~~lp~l~--~~L~~L~~ 768 (945)
|.|.+|++..+|. ++..+++|++|||.+|.|.++ |..+..+ +|+.|.++. |+ +..+++.. -.++.-..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq-l~Wl~qWl~~~~lq~sv~ 474 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ-LKWLAQWLYRRKLQSSVI 474 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc-HHHHHHHHHhccccccee
Confidence 9999999999985 889999999999999999866 4567777 888887654 43 34444332 12333334
Q ss_pred ccCccccccc
Q 041079 769 DHCTVLKSIS 778 (945)
Q Consensus 769 ~~c~~L~~l~ 778 (945)
..|..-+.+.
T Consensus 475 a~CayPe~La 484 (873)
T KOG4194|consen 475 AKCAYPEPLA 484 (873)
T ss_pred eeccCCcccc
Confidence 4676555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.8e-21 Score=202.40 Aligned_cols=248 Identities=24% Similarity=0.293 Sum_probs=212.6
Q ss_pred chhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCC
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSL 569 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l 569 (945)
.+....+..|.+|.+++|.+... |..++.+..++.++.++|+... .+..+.++.+|+.|+.+.|......++++.+
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~---lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSE---LPEQIGSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred cHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHhh---ccHHHhhhhhhhhhhccccceeecCchHHHH
Confidence 44567888899999999988754 4477888899999999886432 3455677788888899998877777789999
Q ss_pred cccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccccc
Q 041079 570 SNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAY 649 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 649 (945)
..|..|+..+|+|..+|..++++.+|..|++.+|+ +..+|...-+++.|++||... +.++.+|+.++.|.+|+-|++.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhh
Confidence 99999999999999999999999999999999988 666666666799999999876 4578999999999999999999
Q ss_pred CCCCccCCccccCCCCCcEEEcccCCCCccCccccccccc-cCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCC
Q 041079 650 GTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLS-SDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNN 728 (945)
Q Consensus 650 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~ 728 (945)
.|.+..+| ++..+..|+.|.+..|.. ..+|.. ...+++|..|||++|+++++|+.+..+.+|+.||+|+|.
T Consensus 215 ~Nki~~lP-ef~gcs~L~Elh~g~N~i-------~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 215 RNKIRFLP-EFPGCSLLKELHVGENQI-------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred hcccccCC-CCCccHHHHHHHhcccHH-------HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 99999999 899999999999988763 223333 447899999999999999999999999999999999999
Q ss_pred CcccchhhhCCCCCCEEeeccCCC
Q 041079 729 FERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 729 l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
++.+|.+++++ +|+.|-+.+|+.
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccCCcccccc-eeeehhhcCCch
Confidence 99999999999 999999999974
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.6e-20 Score=195.42 Aligned_cols=261 Identities=24% Similarity=0.264 Sum_probs=219.9
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
..|..|.+++|.+.... ....++..|.+|++++|+... .++.+..+..+..|+.+.|+....++.+..+.+|+.|+
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 45667788887765433 367789999999999887543 45678888999999999988665555889999999999
Q ss_pred ecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC
Q 041079 577 LSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV 656 (945)
Q Consensus 577 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l 656 (945)
.++|.+.++|++++.+..|..|+..+|+ +.++|..++++.+|..|++.+|.. ..+|+..-+|+.|++|+...|-.+.+
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhhhhcC
Confidence 9999999999999999999999999887 888999999999999999999665 45666655699999999999999999
Q ss_pred CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccC-CCCCCCEEECCCCCCcccchh
Q 041079 657 PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLG-RLSLLEELDLRRNNFERVPES 735 (945)
Q Consensus 657 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~~ 735 (945)
|..++.+.+|..|++..|+. ..+| .++++..|++|+++.|.+..+|.... .+++|..|||..|+++++|..
T Consensus 199 P~~lg~l~~L~~LyL~~Nki-------~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKI-------RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred ChhhcchhhhHHHHhhhccc-------ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence 99999999999999999984 2234 58889999999999999999998775 899999999999999999999
Q ss_pred hhCCCCCCEEeeccCCCCcccCCcccc--cceEeeccCc
Q 041079 736 IIQLSKLNYLYLSYCQRLQSLPELPCN--LILLYADHCT 772 (945)
Q Consensus 736 i~~l~~L~~L~L~~c~~l~~lp~l~~~--L~~L~~~~c~ 772 (945)
+..+.+|.+||+|+|. +.++|.-..+ |+.|-+.|.|
T Consensus 271 ~clLrsL~rLDlSNN~-is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNND-ISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCCc-cccCCcccccceeeehhhcCCc
Confidence 9999999999999986 4556654443 4556666654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-18 Score=160.26 Aligned_cols=168 Identities=26% Similarity=0.376 Sum_probs=137.4
Q ss_pred CCCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCC
Q 041079 541 SFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLE 620 (945)
Q Consensus 541 ~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 620 (945)
..+-++++++.|.|+.|+.....|.+..+.+|+.|++++|+|+++|.++..|++|++|++.-|. +..+|..++.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 4455667778889999988777889999999999999999999999999999999999999887 888999999999999
Q ss_pred EEeccCCCCC-CccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEE
Q 041079 621 DLNLCRCSNL-RRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSL 699 (945)
Q Consensus 621 ~L~Ls~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 699 (945)
.|||++|+.. ..+|..+..|+.|+-|+++.|..+-+|..++.+++|+.|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~----------------------------- 156 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILS----------------------------- 156 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEe-----------------------------
Confidence 9999997755 4688888899999999999998888887776655555555
Q ss_pred eccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCC
Q 041079 700 CLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQL 739 (945)
Q Consensus 700 ~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l 739 (945)
+.+|.+.++|..++.++.|++|++.||+++.+|+.++++
T Consensus 157 -lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 157 -LRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred -eccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 455555567777777777777777777777777665554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=8.8e-16 Score=182.18 Aligned_cols=159 Identities=24% Similarity=0.288 Sum_probs=79.5
Q ss_pred cccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccccc
Q 041079 570 SNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAY 649 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 649 (945)
++|++|+|++|.++.+|... .+|+.|++++|. +..+|.. ..+|++|+|++|... .+|... .+|+.|+++
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~lp---~~L~~L~Ls 370 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLA-SLPTLP---SELYKLWAY 370 (788)
T ss_pred cccceeECCCCccccCCCCc---ccccccccccCc-ccccccc---ccccceEecCCCccC-CCCCCC---cccceehhh
Confidence 44555555555555444321 234444444443 3334421 134555555554332 344322 234555555
Q ss_pred CCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCC
Q 041079 650 GTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 650 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l 729 (945)
+|.+..+|... .+|+.|++++|... . +|. ..++|+.|++++|.+..+|.. +.+|+.|+|++|++
T Consensus 371 ~N~L~~LP~l~---~~L~~LdLs~N~Lt-~------LP~---l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL 434 (788)
T PRK15387 371 NNRLTSLPALP---SGLKELIVSGNRLT-S------LPV---LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL 434 (788)
T ss_pred ccccccCcccc---cccceEEecCCccc-C------CCC---cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc
Confidence 55555555422 34556666555421 1 111 123566666666666666542 23455666666666
Q ss_pred cccchhhhCCCCCCEEeeccCCCCcc
Q 041079 730 ERVPESIIQLSKLNYLYLSYCQRLQS 755 (945)
Q Consensus 730 ~~lp~~i~~l~~L~~L~L~~c~~l~~ 755 (945)
+.+|..+.++++|+.|+|++|+..+.
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccChHHhhccCCCeEECCCCCCCch
Confidence 66666666666666666666665443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=8.5e-16 Score=183.61 Aligned_cols=221 Identities=22% Similarity=0.287 Sum_probs=138.1
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEec
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHL 600 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 600 (945)
++|+.|+|++|+ ++.+|. .+ ..+|+.|+|++|. +..+|.. -..+|+.|+|++|.+..+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~--~l--~~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPE--NL--QGNIKTLYANSNQ-LTSIPAT-LPDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCC-CCcCCh--hh--ccCCCEEECCCCc-cccCChh-hhccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 356777777653 344432 11 2367777777765 3345521 12467777777777777777654 46777777
Q ss_pred cccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccC
Q 041079 601 QACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQM 680 (945)
Q Consensus 601 ~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 680 (945)
++|+ +..+|..+. ++|++|++++|.. ..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|... .
T Consensus 270 s~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~- 339 (754)
T PRK15370 270 FHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-S- 339 (754)
T ss_pred cCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCccc-c-
Confidence 7665 556776553 4777788777643 34665443 367777777777777765443 57777777777532 1
Q ss_pred ccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcc
Q 041079 681 GLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELP 760 (945)
Q Consensus 681 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~ 760 (945)
+|..+ .++|+.|++++|++..+|..+. ++|+.|+|++|+++.+|..+.. .|+.|++++|+. ..+|...
T Consensus 340 -----LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L-~~LP~sl 407 (754)
T PRK15370 340 -----LPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNL-VRLPESL 407 (754)
T ss_pred -----CChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCc-ccCchhH
Confidence 22222 2577778888877777776553 5777888888877777766543 577777777764 3555422
Q ss_pred -------cccceEeeccCc
Q 041079 761 -------CNLILLYADHCT 772 (945)
Q Consensus 761 -------~~L~~L~~~~c~ 772 (945)
+++..|++.+++
T Consensus 408 ~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHhhcCCCccEEEeeCCC
Confidence 345666666654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.7e-15 Score=179.75 Aligned_cols=233 Identities=21% Similarity=0.201 Sum_probs=156.4
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
++|+.|.+.+|++... |. ..++|++|++++| .++.+|. ..++|+.|+|++|. +..+|.+ ..+|+.|+
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~-L~~Lp~l--p~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPAL--PSGLCKLW 288 (788)
T ss_pred cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCC-ccCcccC-----cccccceeeccCCc-hhhhhhc--hhhcCEEE
Confidence 3678888888877753 22 2477888888876 3444442 13467777888875 3445432 35678888
Q ss_pred ecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC
Q 041079 577 LSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV 656 (945)
Q Consensus 577 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l 656 (945)
|++|.++.+|.. +++|+.|+|++|+ +..+|.. ..+|+.|++++|.. +.+|.. ..+|+.|++++|.+..+
T Consensus 289 Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 289 IFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLASL 357 (788)
T ss_pred CcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCcc-cccccc---ccccceEecCCCccCCC
Confidence 888888888763 4678888888876 5566652 24577778877654 346642 24688888888888887
Q ss_pred CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhh
Q 041079 657 PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESI 736 (945)
Q Consensus 657 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i 736 (945)
|.. ..+|+.|++++|... . +|. .+.+|+.|++++|.+..+|.. .++|+.|+|++|.++.+|..
T Consensus 358 P~l---p~~L~~L~Ls~N~L~-~------LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l- 420 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLT-S------LPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML- 420 (788)
T ss_pred CCC---Ccccceehhhccccc-c------Ccc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc-
Confidence 763 346777777777632 1 222 134688888888888877753 35788888888888888753
Q ss_pred hCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCcc
Q 041079 737 IQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCTV 773 (945)
Q Consensus 737 ~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~ 773 (945)
..+|+.|++++|+ ++.+|.- .++|+.|++++++.
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 2467778888876 4467753 35677788877764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=3.1e-17 Score=187.87 Aligned_cols=203 Identities=24% Similarity=0.304 Sum_probs=113.8
Q ss_pred CcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccc
Q 041079 569 LSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYA 648 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 648 (945)
-.+|++++++.|.++.+|++++.+.+|+.|++.+|. +..+|..+...++|+.|.+..|. +..+|+..+.+++|++|+|
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence 356777777777777777777777777777777766 46666656566666666655543 3455555555666666666
Q ss_pred cCCCCccCCccccC-C-CCCcEEEcccCCCCccCc------------------cccccccccCCCCCCCEEeccCCCCCc
Q 041079 649 YGTASSEVPSSIVR-S-NNFRFLSFRESRGDKQMG------------------LSLLISLSSDGLHSLKSLCLHNCGVTR 708 (945)
Q Consensus 649 ~~~~~~~lp~~l~~-l-~~L~~L~l~~~~~~~~~~------------------~~~~~~~~l~~l~~L~~L~L~~~~l~~ 708 (945)
..|.+..+|..+.. + ..|+.|+.+.++...... +....-+.+.+..+|+.|+|++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 66666555542211 0 011222222111100000 000111124455666666666666666
Q ss_pred cCc-ccCCCCCCCEEECCCCCCcccchh----------------------hhCCCCCCEEeeccCCCCc-ccCC-cc-cc
Q 041079 709 LPE-SLGRLSLLEELDLRRNNFERVPES----------------------IIQLSKLNYLYLSYCQRLQ-SLPE-LP-CN 762 (945)
Q Consensus 709 lp~-~l~~l~~L~~L~Ls~n~l~~lp~~----------------------i~~l~~L~~L~L~~c~~l~-~lp~-l~-~~ 762 (945)
+|+ .+.++..|++|+||||.++.+|.. +.+++.|+.+||+.|.... .+|. .| ++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 664 345566666666666666555543 4566777777777765432 2332 35 78
Q ss_pred cceEeeccCcc
Q 041079 763 LILLYADHCTV 773 (945)
Q Consensus 763 L~~L~~~~c~~ 773 (945)
|++|+++|++.
T Consensus 478 LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 478 LKYLDLSGNTR 488 (1081)
T ss_pred cceeeccCCcc
Confidence 88888888764
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.5e-18 Score=156.51 Aligned_cols=167 Identities=27% Similarity=0.380 Sum_probs=141.6
Q ss_pred CCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCc
Q 041079 561 KKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNV 640 (945)
Q Consensus 561 ~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l 640 (945)
..+|.+..+.+...|.||+|.++.+|+.|..|.+|+.|++.+|+ ++.+|.+|..+++|++|+++-| .+..+|.++|.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCC
Confidence 45667788889999999999999999999999999999999987 8999999999999999999764 456788888888
Q ss_pred ccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCC
Q 041079 641 EASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLE 720 (945)
Q Consensus 641 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 720 (945)
+.|+.|++..|+..+- .+|..+-.++.|+.|+|++|.+.-+|..++.+++|+
T Consensus 102 p~levldltynnl~e~----------------------------~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNEN----------------------------SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQ 153 (264)
T ss_pred chhhhhhccccccccc----------------------------cCCcchhHHHHHHHHHhcCCCcccCChhhhhhccee
Confidence 8888888777654321 123334457788899999999999999999999999
Q ss_pred EEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC
Q 041079 721 ELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 721 ~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
.|.+..|++-++|..++.++.|+.|.+.+|+ ++.+|+
T Consensus 154 il~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 154 ILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred EEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 9999999999999999999999999999987 444544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=2.3e-15 Score=180.01 Aligned_cols=224 Identities=22% Similarity=0.342 Sum_probs=171.1
Q ss_pred eeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccc
Q 041079 523 LKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQA 602 (945)
Q Consensus 523 L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 602 (945)
...|++++++ ++.+|. .++ ++|+.|+|++|.. ..+|... ..+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~-LtsLP~--~Ip--~~L~~L~Ls~N~L-tsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILG-LTTIPA--CIP--EQITTLILDNNEL-KSLPENL-QGNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCC-cCcCCc--ccc--cCCcEEEecCCCC-CcCChhh-ccCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 4566666543 344442 222 4788999999864 4666321 3699999999999999998764 5899999999
Q ss_pred cccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCcc
Q 041079 603 CKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGL 682 (945)
Q Consensus 603 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 682 (945)
|. +..+|..+. .+|+.|++++|.. ..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|... .
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~--- 318 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-A--- 318 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-c---
Confidence 98 668888764 5899999997654 57888765 489999999999999987654 57899999998742 1
Q ss_pred ccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccC-Cccc
Q 041079 683 SLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLP-ELPC 761 (945)
Q Consensus 683 ~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~l~~ 761 (945)
+|..+ .++|+.|++++|.++.+|..+. ++|+.|+|++|+++.+|..+. ++|+.|+|++|+.. .+| .++.
T Consensus 319 ---LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~ 388 (754)
T PRK15370 319 ---LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT-NLPENLPA 388 (754)
T ss_pred ---CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC-CCCHhHHH
Confidence 22222 3689999999999999998764 799999999999999997663 68999999999754 566 4567
Q ss_pred ccceEeeccCccccccc
Q 041079 762 NLILLYADHCTVLKSIS 778 (945)
Q Consensus 762 ~L~~L~~~~c~~L~~l~ 778 (945)
+|+.|++++|. |..+|
T Consensus 389 sL~~LdLs~N~-L~~LP 404 (754)
T PRK15370 389 ALQIMQASRNN-LVRLP 404 (754)
T ss_pred HHHHHhhccCC-cccCc
Confidence 89999998864 44444
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=5.3e-17 Score=185.95 Aligned_cols=151 Identities=23% Similarity=0.226 Sum_probs=99.8
Q ss_pred ccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCcccc-
Q 041079 606 LKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSL- 684 (945)
Q Consensus 606 l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~- 684 (945)
+..+|..++.+.+|+.|+..+|.. ..+|..+..+++|+.|.+..|.++.+|.....+++|++|+|..|..........
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 334444455555555555554433 455555556666666666667777777777788888888888876422111100
Q ss_pred -----------------cccc-ccCCCCCCCEEeccCCCCCc-cCcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCE
Q 041079 685 -----------------LISL-SSDGLHSLKSLCLHNCGVTR-LPESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNY 744 (945)
Q Consensus 685 -----------------~~~~-~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~ 744 (945)
..|. .-..++.|+.|.+.+|.+++ .-+.+.++.+|+.|+|++|.+..+|+ .+.++..|+.
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 0000 00123467788888888884 44467888999999999999999995 5778999999
Q ss_pred EeeccCCCCcccCC
Q 041079 745 LYLSYCQRLQSLPE 758 (945)
Q Consensus 745 L~L~~c~~l~~lp~ 758 (945)
|+||+|+ ++.+|.
T Consensus 412 L~LSGNk-L~~Lp~ 424 (1081)
T KOG0618|consen 412 LNLSGNK-LTTLPD 424 (1081)
T ss_pred Hhcccch-hhhhhH
Confidence 9999997 455553
No 22
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.49 E-value=6.5e-15 Score=141.64 Aligned_cols=98 Identities=33% Similarity=0.543 Sum_probs=84.9
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcC--CEEEeEeeeecCCccc-cccCchhhHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYA--QIVIPVFYRVDPSDLR-NQSGTFGDSYL 77 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~--~~v~Pvfy~v~ps~vr-~q~g~~~~~~~ 77 (945)
+.+|..+.+++.+||++||++|+|||++|++|.||+.||..++++..+.+ ++|+||||+|.+++++ +|.+.|..++.
T Consensus 38 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~ 117 (141)
T PF01582_consen 38 FLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFL 117 (141)
T ss_dssp TSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCT
T ss_pred hcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhh
Confidence 46899999999999999999999999999999999999999999998765 8999999999999999 79999998887
Q ss_pred HHHHHhhhc--hhhHHhHHHHHH
Q 041079 78 KLEERFKEN--SKKLQSWRNALK 98 (945)
Q Consensus 78 ~~~~~~~~~--~~~~~~w~~aL~ 98 (945)
.+..-.... ..+...|++++.
T Consensus 118 ~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 118 TYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HCEETSSSGGGGGHHHHHHHHHH
T ss_pred hheeCCCCCCccHHHHHHHHHhc
Confidence 765543332 467889998875
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.9e-14 Score=159.50 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=64.9
Q ss_pred hhhccCcCccccccccccCCCC----CccccccCcceeEEEecCCcCCccCC----CCCCCccccccceeeecCCCCCCC
Q 041079 491 DTFTKMPKLRFLKFYRSSINGE----NKCKQQHHGKLKQIIISAGNFFTKTP----KPSFIPYLKELVILNLRGCKGLKK 562 (945)
Q Consensus 491 ~~f~~~~~Lr~L~l~~~~l~~~----~~~~~~~l~~L~~L~Ls~~~~l~~~~----~~~~~~~l~~L~~L~L~~~~~l~~ 562 (945)
..|..+.+|+.|.+.++.+... ++..+...++|+.++++++..-.... ....+.++++|+.|+|++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3455566677777776665432 22334455566666666553210000 011233445566666666554332
Q ss_pred CC-CccCCc---ccceEeecCCCCc-----ccCccccCC-ccccEEecccccccc----ccCcccCCCCCCCEEeccCCC
Q 041079 563 LP-EISSLS---NIEKIILSGTAIE-----ELPSSVGCL-SGLVLLHLQACKMLK----SLPCSLFKLKSLEDLNLCRCS 628 (945)
Q Consensus 563 lp-~~~~l~---~L~~L~Ls~~~i~-----~lp~~i~~L-~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~ 628 (945)
.+ .+..+. +|++|++++|.+. .+..++..+ ++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 22 122222 2566666555554 122233444 555555555555321 222333344555555555554
Q ss_pred C
Q 041079 629 N 629 (945)
Q Consensus 629 ~ 629 (945)
.
T Consensus 177 l 177 (319)
T cd00116 177 I 177 (319)
T ss_pred C
Confidence 3
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=4.2e-14 Score=156.79 Aligned_cols=250 Identities=17% Similarity=0.102 Sum_probs=137.9
Q ss_pred cccccccCC-CCCccccccCcceeEEEecCCcCCccC--CCCCCCccccccceeeecCCCCCC------CCC-CccCCcc
Q 041079 502 LKFYRSSIN-GENKCKQQHHGKLKQIIISAGNFFTKT--PKPSFIPYLKELVILNLRGCKGLK------KLP-EISSLSN 571 (945)
Q Consensus 502 L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~~~~l~~~--~~~~~~~~l~~L~~L~L~~~~~l~------~lp-~~~~l~~ 571 (945)
|++.++.+. ......+..+.+|+.|+++++...... .....+...+.|+.|+++++.... .++ .+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555555 233445556677888888876531110 012234455567777777765431 011 2344667
Q ss_pred cceEeecCCCCc-ccCccccCCcc---ccEEecccccccc----ccCcccCCC-CCCCEEeccCCCCCC----ccCCccC
Q 041079 572 IEKIILSGTAIE-ELPSSVGCLSG---LVLLHLQACKMLK----SLPCSLFKL-KSLEDLNLCRCSNLR----RFPEEIG 638 (945)
Q Consensus 572 L~~L~Ls~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~----~lp~~i~~l-~~L~~L~Ls~~~~~~----~lp~~l~ 638 (945)
|++|++++|.+. ..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|...+ .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 777777777775 33333444443 7777777776431 223334455 677777777776552 2334455
Q ss_pred CcccCccccccCCCCc-----cCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc-----
Q 041079 639 NVEASNSLYAYGTASS-----EVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR----- 708 (945)
Q Consensus 639 ~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~----- 708 (945)
.+.+|++|++++|.+. .++..+..+++|+.|++++|..... . ...+...+..+++|+.|++++|.+..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~-~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE-G-ASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH-H-HHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 5566777777776654 2333444556777777776653211 0 01122334456677777777776663
Q ss_pred cCccc-CCCCCCCEEECCCCCCc-----ccchhhhCCCCCCEEeeccCCCC
Q 041079 709 LPESL-GRLSLLEELDLRRNNFE-----RVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 709 lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+...+ ...+.|++|++++|.++ .++..+..+++|++|++++|...
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 11111 12356777777777664 33445555667777777776643
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=7e-11 Score=150.22 Aligned_cols=290 Identities=14% Similarity=0.154 Sum_probs=182.1
Q ss_pred CCCCCCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHH
Q 041079 133 FPRDNNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 133 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
+|. ....+|-|..-++.+... ...+++.|.|++|.||||++..+..+ ++.++|+. ..... .+...+...+
T Consensus 9 ~p~-~~~~~~~R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d---~~~~~f~~~l 78 (903)
T PRK04841 9 RPV-RLHNTVVRERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESD---NQPERFASYL 78 (903)
T ss_pred CCC-CccccCcchHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCccc---CCHHHHHHHH
Confidence 344 667889999888777643 33889999999999999999998864 33688885 32211 3334444555
Q ss_pred HHHHhCCCCc-----------c--CC----HHHHHHHHc--CCCcEEEEecCCCh------HHHHHHhcCCCCCCCCCeE
Q 041079 213 LSKLLKHENV-----------I--LD----IDLNFRRLS--RMKVLIVFDDVTCF------RQIKSLIRSPDWFMADSRI 267 (945)
Q Consensus 213 l~~l~~~~~~-----------~--~~----~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gs~I 267 (945)
+..+...... . .+ ...+...+. +.+++|||||+... +.+..++... .++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~l 155 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTL 155 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEE
Confidence 5544311100 0 11 122223332 67899999998653 2344555443 467789
Q ss_pred EEEecCccccccC---CcceEEEcC----CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhcccc
Q 041079 268 IITTRNKQVLRNC---SVKEIYEMK----ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLF 340 (945)
Q Consensus 268 IiTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 340 (945)
|||||...-.... ......++. +|+.+|+.++|...... . . ..+.+.++.+.++|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~-~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P-I---EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C-C---CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999985322111 112345555 99999999999765421 1 1 234577899999999999999887765
Q ss_pred CCCHHHHHHHHHHHHhccCcchhhhhh-hhccCCChhhHhhhhhhcccCCCCChHHHHHHhhhcCCCcccchHHHHhccc
Q 041079 341 EKEKEVWESAINKLKRFLHPSIQEVLK-VSYDGLDDNEKNIFLDVACFFKGEDVYPVMKFLDASGFYPTTGISVLVDKSL 419 (945)
Q Consensus 341 ~~~~~~w~~~l~~l~~~~~~~i~~~l~-~Sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sL 419 (945)
+.... .......+...+...+.+.+. -.++.||+..+..++..|+++ .++.+.+..+... -.....++.|.+.++
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l 306 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGL 306 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCC
Confidence 42210 011111121112344555443 347899999999999999986 5554444333321 123556889999998
Q ss_pred cee-c---CCEEehhHHHHHHHHHHHhhc
Q 041079 420 IAI-S---YNKIMMHDLLQELGREIVRQE 444 (945)
Q Consensus 420 i~~-~---~~~~~mHdli~~~~~~i~~~e 444 (945)
+.. . ...|..|++++++.+.....+
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 653 2 247999999999998876433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=1.1e-13 Score=151.07 Aligned_cols=226 Identities=23% Similarity=0.323 Sum_probs=174.1
Q ss_pred CccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcc
Q 041079 534 FTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCS 612 (945)
Q Consensus 534 l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 612 (945)
++..|....-..+.--...||+.|++. .+| ....+..|+.|.|..|.|..+|..+++|..|.+|||+.|. +..+|..
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~ 139 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDG 139 (722)
T ss_pred hhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChh
Confidence 334444433345555566788888754 455 6777899999999999999999999999999999999988 8889999
Q ss_pred cCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCC
Q 041079 613 LFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDG 692 (945)
Q Consensus 613 i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 692 (945)
++.|+ |+.|.+++ ++++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|... .+|..+..
T Consensus 140 lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-------~lp~El~~ 210 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-------DLPEELCS 210 (722)
T ss_pred hhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-------hCCHHHhC
Confidence 98886 89999987 56789999999889999999999999999999999999999988887742 23444443
Q ss_pred CCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhh---CCCCCCEEeeccCCCCcccCCcccccceEeec
Q 041079 693 LHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESII---QLSKLNYLYLSYCQRLQSLPELPCNLILLYAD 769 (945)
Q Consensus 693 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~---~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~ 769 (945)
| .|..||++.|++..+|-.|..++.|++|-|.+|.+.+-|..|. ...-.++|+..-|+ .+.-+.++..++=....
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~ 288 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFS 288 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccC
Confidence 3 4788999999999999889999999999999998888887664 34455788888885 34344444444433333
Q ss_pred cCc
Q 041079 770 HCT 772 (945)
Q Consensus 770 ~c~ 772 (945)
.|.
T Consensus 289 ~c~ 291 (722)
T KOG0532|consen 289 SCH 291 (722)
T ss_pred Ccc
Confidence 443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=3e-14 Score=149.06 Aligned_cols=273 Identities=20% Similarity=0.174 Sum_probs=129.0
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
+++..+.+..+++.+|+.+++||.|++++|+++..-|..|+.+..|..|.+.+++.++++|. ..+..|..|+.|.+.-|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChh
Confidence 34444445555666666666666666666666555555555555555555555444444432 23444444444444444
Q ss_pred CCCCCCC-CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCC
Q 041079 558 KGLKKLP-EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPE 635 (945)
Q Consensus 558 ~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~ 635 (945)
+..-..+ .+..+++|..|.+..|.+..++. ++..+..++++.+..|...- .++++-|.. .....|-
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~~~i 218 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAMNPI 218 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhhchh
Confidence 3222222 23334444445555554444444 34444444444444333110 011111111 1111222
Q ss_pred ccCCcccCccccccCCCCccCCccccCCCCCcEE--Ec-ccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-Cc
Q 041079 636 EIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFL--SF-RESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PE 711 (945)
Q Consensus 636 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L--~l-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~ 711 (945)
.++......-..+....+..+++.-... .++.+ .+ +.|.... ......+.++++|+.|+|++|.++++ +.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~-----~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDS-----ICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCC-----cChHHHHhhcccceEeccCCCccchhhhh
Confidence 3333333333333333333332211110 01111 00 1111100 00111256677777777777777765 45
Q ss_pred ccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCCcccCCcc---cccceEeec
Q 041079 712 SLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPELP---CNLILLYAD 769 (945)
Q Consensus 712 ~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~ 769 (945)
+|..+..|++|.|..|++..+.. .+.+++.|+.|+|.+|+....-|..+ .+|..|.+-
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 67777777777777777776553 45667777777777777665555443 334445444
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-13 Score=144.77 Aligned_cols=276 Identities=18% Similarity=0.170 Sum_probs=171.5
Q ss_pred cccccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceee
Q 041079 474 EGICLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILN 553 (945)
Q Consensus 474 ~~i~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ 553 (945)
+|..+|.+...-..++.+.= +.-..+.+..|.+....+..|+.+++||.||||+|+.- ...+..+..+..|..|-
T Consensus 47 ~g~~VdCr~~GL~eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 47 EGGIVDCRGKGLTEVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLV 121 (498)
T ss_pred CCceEEccCCCcccCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHH
Confidence 34445555443333433221 23456778888888888889999999999999987642 23456677788888888
Q ss_pred ecCCCCCCCCC--CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCC
Q 041079 554 LRGCKGLKKLP--EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 554 L~~~~~l~~lp--~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~ 629 (945)
+.+++.+..+| .+.+|..|+.|.+.-|.+..++. .+..|++|..|.+.+|. ...++. ++..+.+++++.+..|..
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 88877777887 46678888888888888885544 57788888888888876 666665 677788888888876543
Q ss_pred CCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCC-CCc
Q 041079 630 LRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG-VTR 708 (945)
Q Consensus 630 ~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~ 708 (945)
.- ..+++.|..-. ...|..++...-..-..+...+. .+..... + ...+.++.+--.+.|. ...
T Consensus 201 ic-----dCnL~wla~~~------a~~~ietsgarc~~p~rl~~~Ri-~q~~a~k-f---~c~~esl~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 201 IC-----DCNLPWLADDL------AMNPIETSGARCVSPYRLYYKRI-NQEDARK-F---LCSLESLPSRLSSEDFPDSI 264 (498)
T ss_pred cc-----ccccchhhhHH------hhchhhcccceecchHHHHHHHh-cccchhh-h---hhhHHhHHHhhccccCcCCc
Confidence 21 22332222211 11222333332222222222221 1111000 0 0111222211223333 233
Q ss_pred cC-cccCCCCCCCEEECCCCCCcccc-hhhhCCCCCCEEeeccCCCCcccC----CcccccceEeeccCc
Q 041079 709 LP-ESLGRLSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLSYCQRLQSLP----ELPCNLILLYADHCT 772 (945)
Q Consensus 709 lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp----~l~~~L~~L~~~~c~ 772 (945)
.| ..|+.+++|++|+|++|+++.+- .++..+..|+.|.|..|+. ..+. .-...|+.|++.++.
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe
Confidence 44 36889999999999999999775 6889999999999999974 3222 234678889988763
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=3e-13 Score=147.78 Aligned_cols=203 Identities=23% Similarity=0.289 Sum_probs=174.5
Q ss_pred CCCCCCCC---ccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccC
Q 041079 558 KGLKKLPE---ISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP 634 (945)
Q Consensus 558 ~~l~~lp~---~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp 634 (945)
..++.+|. -..+.--...+|+.|++.++|..+..+..|+.|.|..|. +..+|..++++..|.+|+|+.|. +..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCC
Confidence 34556661 133666778899999999999999999999999999987 78899999999999999999865 56789
Q ss_pred CccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccC
Q 041079 635 EEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLG 714 (945)
Q Consensus 635 ~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~ 714 (945)
..+..|+ |+.|-+++|.++.+|..++.+..|..|+.+.|.. ..+|..++++.+|+.|+++.|++..+|..+.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-------~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 9998887 9999999999999999999999999999999975 3356678899999999999999999999998
Q ss_pred CCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcc------cccceEeeccCc
Q 041079 715 RLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELP------CNLILLYADHCT 772 (945)
Q Consensus 715 ~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~------~~L~~L~~~~c~ 772 (945)
.| .|..||+|+|++..||-.+.+|..|++|.|.+|+ +++-|.-. --.++|++.-|.
T Consensus 210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 65 5999999999999999999999999999999988 56666432 225778888884
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.4e-11 Score=140.80 Aligned_cols=198 Identities=29% Similarity=0.388 Sum_probs=160.2
Q ss_pred eeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCc-cccEEeccccccccccCcccCCCCCCCEEeccCCCC
Q 041079 551 ILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLS-GLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 551 ~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~ 629 (945)
.|++.++.....+..+..++.+..|++.++.++++|+..+.+. +|+.|++++|+ +..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-
Confidence 4566666654555566667888999999999999988888885 89999999887 77787678889999999998865
Q ss_pred CCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc
Q 041079 630 LRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL 709 (945)
Q Consensus 630 ~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l 709 (945)
+..+|...+.+.+|+.|++++|.+..+|..+..+..|+.|.+++|.. ...+..+..+.++..|.+.+|.+..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-------~~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-------IELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc-------eecchhhhhcccccccccCCceeeec
Confidence 45677766688889999999999999998887888899999988852 22344466778888888888888888
Q ss_pred CcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC
Q 041079 710 PESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 710 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
+..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 8889999999999999999998886 88899999999999887665553
No 31
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.14 E-value=1.8e-10 Score=110.95 Aligned_cols=98 Identities=41% Similarity=0.645 Sum_probs=82.0
Q ss_pred CCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhh-cCCEEEeEeeeecCCccccccCchhhHHHHHHHH
Q 041079 4 GDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKRE-YAQIVIPVFYRVDPSDLRNQSGTFGDSYLKLEER 82 (945)
Q Consensus 4 g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~-~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~~~ 82 (945)
|.....++.+||++|++.|+|+|++|..|.||..|+..++++..+ ....||||+|+..|+++..+.+.++.++.....+
T Consensus 41 ~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (140)
T smart00255 41 GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLK 120 (140)
T ss_pred ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhh
Confidence 333334999999999999999999999999999999999998865 6679999999999999999999999999887444
Q ss_pred hhhchhhHHhHHHHHHHHhc
Q 041079 83 FKENSKKLQSWRNALKEAAG 102 (945)
Q Consensus 83 ~~~~~~~~~~w~~aL~~~~~ 102 (945)
+.....+ ..|++++..+++
T Consensus 121 w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 121 WPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred cCCchhH-HHHHHHHHHhcc
Confidence 4433333 689998877653
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=3.3e-09 Score=121.18 Aligned_cols=238 Identities=15% Similarity=0.142 Sum_probs=145.3
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACL 208 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l 208 (945)
.++.++||+.++++|...+.. .+.+.|+|++|+|||++++.+++++..... ..+++. .... .+...+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~----~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID----RTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC----CCHHHH
Confidence 567899999999999998844 467899999999999999999998766542 233332 2211 345677
Q ss_pred HHHHHHHHhCCCCc--cCC----HHHHHHHHc--CCCcEEEEecCCChH------HHHHHhcCCCCCCCCCe--EEEEec
Q 041079 209 RQELLSKLLKHENV--ILD----IDLNFRRLS--RMKVLIVFDDVTCFR------QIKSLIRSPDWFMADSR--IIITTR 272 (945)
Q Consensus 209 ~~~ll~~l~~~~~~--~~~----~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~--IIiTTR 272 (945)
...++.++...... ..+ ...+.+.+. +++++||||+++... .+..+...... .++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 77888887653221 112 344455554 456899999997743 35555443221 13333 666666
Q ss_pred CccccccCC-------cceEEEcCCCCHHHHHHHHHHhhhcC---CCCCccH-HHHHHHHHHHhcCCcchHHHhhccc--
Q 041079 273 NKQVLRNCS-------VKEIYEMKELRDDHALELFSRHAFKQ---NHPDVGY-EELSSRVIQYAQGVPLALEILGCSL-- 339 (945)
Q Consensus 273 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~---~~~~~~~-~~l~~~i~~~~~GlPLal~~lg~~L-- 339 (945)
+..+..... ....+.+++++.++..+++..++-.. ...+++. +.+++......|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 554332211 12467899999999999998876322 1222222 2222222222455667776654321
Q ss_pred ---cC---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhccc
Q 041079 340 ---FE---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACF 387 (945)
Q Consensus 340 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f 387 (945)
.+ .+.+....+++... .....-.+..|+.++|.++..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 24566666665542 2233446789999999988777644
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=1.6e-09 Score=119.15 Aligned_cols=244 Identities=16% Similarity=0.146 Sum_probs=144.1
Q ss_pred CCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 139 NQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
.+|||++..+++|..++.. .+.+.++|++|+|||+||+.+++++...+. +. ..... .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~-~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---IT-SGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Ee-ccchh----cCchhHHH-
Confidence 5699999999999988863 456889999999999999999998754431 11 11000 11111111
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCC-------------------CCCCCCeEEEE
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPD-------------------WFMADSRIIIT 270 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~-------------------~~~~gs~IIiT 270 (945)
.+..+ +...+|++|+++.. .+.+.+..... ...+.+-|..|
T Consensus 75 ~l~~~------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTNL------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHhc------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11111 12345556655432 11111111100 01134455567
Q ss_pred ecCccccccC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhcccc------C-
Q 041079 271 TRNKQVLRNC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLF------E- 341 (945)
Q Consensus 271 TR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~------~- 341 (945)
||...+.... .....+++++++.+|..+++.+.+...... -..+....|++.++|.|-.+..++..+. +
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~ 214 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQ 214 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCC
Confidence 7764433221 123468999999999999999887543221 2246678899999999976655544321 0
Q ss_pred --CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhh-hhcccCCC-CChHHHHHHhhhcCCCcccchH-HHHh
Q 041079 342 --KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFL-DVACFFKG-EDVYPVMKFLDASGFYPTTGIS-VLVD 416 (945)
Q Consensus 342 --~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~ 416 (945)
.+.+..+. ....+...|.++++.++..+. .++.+..+ ...+.+...+.......+..++ .|++
T Consensus 215 ~~it~~~v~~------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 215 KIINRDIALK------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQ 282 (305)
T ss_pred CCcCHHHHHH------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHH
Confidence 11111111 222256678899998888776 44556433 4566777777666555666677 6999
Q ss_pred cccceec
Q 041079 417 KSLIAIS 423 (945)
Q Consensus 417 ~sLi~~~ 423 (945)
++||...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999643
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=3.5e-11 Score=146.57 Aligned_cols=247 Identities=24% Similarity=0.292 Sum_probs=171.7
Q ss_pred cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCC-CCCCCC--ccCCcccceEeecCC-CCcccCccccCCcc
Q 041079 519 HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKG-LKKLPE--ISSLSNIEKIILSGT-AIEELPSSVGCLSG 594 (945)
Q Consensus 519 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~-l~~lp~--~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~ 594 (945)
+....+.+.+.++.. ..++ .-.+.++|+.|-+.+|.. +..++. +..++.|++|||++| .+.++|++|+.|-+
T Consensus 521 ~~~~~rr~s~~~~~~-~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKI-EHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEEeccch-hhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 445667777765543 2222 233445788889988874 555663 667999999999975 56799999999999
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCcc---CCccccCCCCCcEEEc
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE---VPSSIVRSNNFRFLSF 671 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l 671 (945)
|++|+|+++. +..+|.++.+|+.|.+||+..+..+..+|.....|.+|++|.+....... .-..+.++.+|+.|..
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999987 88999999999999999999988888888888889999999987765221 2223455566666655
Q ss_pred ccCCCCccCccccccccccCCCCCCC----EEeccCCCCCccCcccCCCCCCCEEECCCCCCcccch-h-----hhC-CC
Q 041079 672 RESRGDKQMGLSLLISLSSDGLHSLK----SLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPE-S-----IIQ-LS 740 (945)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~-----i~~-l~ 740 (945)
..... .....+..++.|. .+.+.++.....+..+..+.+|+.|.+.++.+..... + ... ++
T Consensus 676 ~~~s~--------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 676 TISSV--------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred ecchh--------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 43331 0000112222332 3444445555677788889999999999998764321 1 111 44
Q ss_pred CCCEEeeccCCCCcccC--CcccccceEeeccCccccccc
Q 041079 741 KLNYLYLSYCQRLQSLP--ELPCNLILLYADHCTVLKSIS 778 (945)
Q Consensus 741 ~L~~L~L~~c~~l~~lp--~l~~~L~~L~~~~c~~L~~l~ 778 (945)
+|..+.+.+|.....+- ..+|+|+.|++..|+.++.+.
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 66666777777666554 357999999999998887654
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=3e-10 Score=119.67 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=101.8
Q ss_pred ccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHH------HHH-
Q 041079 141 LVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACL------RQE- 211 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l------~~~- 211 (945)
|+||+.++++|.+++.. .+.+.|+|+.|+|||+|++.+.+.....-...+|+......... ..... ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHHHH
Confidence 79999999999999987 68999999999999999999999874433344444332221111 11111 111
Q ss_pred ---HHHHHhCCCC----------ccCCHHHHHHHHc--CCCcEEEEecCCChH-----------HHHHHhcCCCCCCCCC
Q 041079 212 ---LLSKLLKHEN----------VILDIDLNFRRLS--RMKVLIVFDDVTCFR-----------QIKSLIRSPDWFMADS 265 (945)
Q Consensus 212 ---ll~~l~~~~~----------~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~l~~l~~~~~~~~~gs 265 (945)
+...+..... .......+.+.+. +++++||+||++... .+..+........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 1111111110 0111444444443 456999999986544 1333333322222333
Q ss_pred eEEEEecCcccccc--------CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 266 RIIITTRNKQVLRN--------CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 266 ~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+...+...+|...+||+|..|..
T Consensus 159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444443333222 2233459999999999999998865332 11012245668999999999988754
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.04 E-value=3.3e-08 Score=111.78 Aligned_cols=239 Identities=17% Similarity=0.208 Sum_probs=142.2
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhcccc------ceEEEEechhhhhccCC
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFE------GSCFLENVREESQRSGG 204 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~~ 204 (945)
.++.++||+.++++|...+.. ...+.|+|++|+|||++++++++.+....+ ..+|+. .... .+
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~----~~ 87 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL----DT 87 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC----CC
Confidence 456899999999999998864 468999999999999999999997754332 233443 2221 34
Q ss_pred HHHHHHHHHHHHhC--CCCc--cCC----HHHHHHHHc--CCCcEEEEecCCChH-----HHHHHhcCCCC-CC--CCCe
Q 041079 205 LACLRQELLSKLLK--HENV--ILD----IDLNFRRLS--RMKVLIVFDDVTCFR-----QIKSLIRSPDW-FM--ADSR 266 (945)
Q Consensus 205 l~~l~~~ll~~l~~--~~~~--~~~----~~~l~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~~~-~~--~gs~ 266 (945)
...+...++.++.. .... ..+ ...+.+.+. +++++||||+++... .+..+.....+ .. ....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 45677777777742 1111 111 234444553 567899999998762 23344332111 11 2334
Q ss_pred EEEEecCccccccCC-------cceEEEcCCCCHHHHHHHHHHhhh---cCCCCCccHHHHHHHHHHHhcCCcch-HHHh
Q 041079 267 IIITTRNKQVLRNCS-------VKEIYEMKELRDDHALELFSRHAF---KQNHPDVGYEELSSRVIQYAQGVPLA-LEIL 335 (945)
Q Consensus 267 IIiTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~GlPLa-l~~l 335 (945)
+|.+|.......... ....+.+++.+.+|..+++..++- .....+++..+.+.+++....|.|.. +.++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555565443221110 124688999999999999998763 22222333344556677777788743 3322
Q ss_pred hccc-----c---CCCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhccc
Q 041079 336 GCSL-----F---EKEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACF 387 (945)
Q Consensus 336 g~~L-----~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f 387 (945)
-... . ..+.+..+.+.+.+. .....-+..+|+.+++.++..++..
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 1 134555555555442 1233445678999998887776643
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=1.4e-10 Score=132.69 Aligned_cols=204 Identities=27% Similarity=0.309 Sum_probs=162.2
Q ss_pred EEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCc-ccceEeecCCCCcccCccccCCccccEEecccc
Q 041079 525 QIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLS-NIEKIILSGTAIEELPSSVGCLSGLVLLHLQAC 603 (945)
Q Consensus 525 ~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 603 (945)
.++++.+.... +...+..+..++.|++.++......+....+. +|+.|++++|.+..+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~---~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS---NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc---CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 45555444312 23334455778888998877544444555564 999999999999999988999999999999998
Q ss_pred ccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccc
Q 041079 604 KMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLS 683 (945)
Q Consensus 604 ~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 683 (945)
. +..+|...+.+++|+.|++++|. ...+|..++.+..|++|.+++|.+...+..+..+.++..|.+.++....
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~----- 246 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED----- 246 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-----
Confidence 8 88888877789999999999864 5678887777778999999999888888889999999999987776421
Q ss_pred cccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCC
Q 041079 684 LLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSK 741 (945)
Q Consensus 684 ~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~ 741 (945)
++..+..+++|+.|++++|.++.++. ++.+.+|+.|++++|.+..++........
T Consensus 247 --~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~~ 301 (394)
T COG4886 247 --LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLL 301 (394)
T ss_pred --ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhccch
Confidence 24556788899999999999999988 99999999999999999877655444433
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=2.6e-09 Score=118.21 Aligned_cols=253 Identities=14% Similarity=0.113 Sum_probs=147.5
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
..++|+|++..++.+..++.. .+.+.|+|++|+||||+|+.+++.+...+. +.. .... ..... .
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~----~~~~~-l 93 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL----EKPGD-L 93 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc----cChHH-H
Confidence 567899999999999887753 567899999999999999999998764332 111 1000 00011 1
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCC-------------------CCCCCCeEE
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPD-------------------WFMADSRII 268 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~~gs~II 268 (945)
..++.. + ++.-+|++|+++... ..+.+..... ...+.+-|.
T Consensus 94 ~~~l~~-----------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 94 AAILTN-----------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred HHHHHh-----------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 111111 1 234466677765422 1111111000 001234455
Q ss_pred EEecCccccccC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHH
Q 041079 269 ITTRNKQVLRNC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEV 346 (945)
Q Consensus 269 iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~ 346 (945)
.|||...+.... .....+++++++.++..+++.+.+......- ..+.+..|++.|+|.|-.+..+...+. .
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~ 228 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVR-----D 228 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHH-----H
Confidence 666654432221 1234689999999999999998875433222 246788999999999965544443221 1
Q ss_pred HHHHHH--HHHhccCcchhhhhhhhccCCChhhHhhhh-hhcccCCC-CChHHHHHHhhhcCCCcccchH-HHHhcccce
Q 041079 347 WESAIN--KLKRFLHPSIQEVLKVSYDGLDDNEKNIFL-DVACFFKG-EDVYPVMKFLDASGFYPTTGIS-VLVDKSLIA 421 (945)
Q Consensus 347 w~~~l~--~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~~sLi~ 421 (945)
|..... .+....-....+.+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcc
Confidence 111000 000000012234456778899998888886 55566544 4567777777665555565677 899999986
Q ss_pred ec
Q 041079 422 IS 423 (945)
Q Consensus 422 ~~ 423 (945)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 43
No 39
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.2e-09 Score=106.46 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=87.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc-----ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHH-H
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE-----GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFR-R 232 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~-~ 232 (945)
|++.|.|.+|+||||+++.++.++..... ...++...+..... .....+...+........... ...+.. .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS-NNSRSLADLLFDQLPESIAPI--EELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc-cccchHHHHHHHhhccchhhh--HHHHHHHH
Confidence 68999999999999999999987765542 22333334443332 222234444433332221111 111222 2
Q ss_pred HcCCCcEEEEecCCChHH-------------HHHHhcCCCCCCCCCeEEEEecCccc---cccCCcceEEEcCCCCHHHH
Q 041079 233 LSRMKVLIVFDDVTCFRQ-------------IKSLIRSPDWFMADSRIIITTRNKQV---LRNCSVKEIYEMKELRDDHA 296 (945)
Q Consensus 233 L~~kr~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 296 (945)
...++++||+|++|+... +..+... ...++.++|||+|.... .........+++.+|++++.
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 257899999999976433 2223322 12478999999998765 22333446899999999999
Q ss_pred HHHHHHhh
Q 041079 297 LELFSRHA 304 (945)
Q Consensus 297 ~~Lf~~~a 304 (945)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987654
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.9e-11 Score=125.57 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=44.8
Q ss_pred CcccceEeecCCCCcccCcc--ccCCccccEEeccccccccc-cCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcc
Q 041079 569 LSNIEKIILSGTAIEELPSS--VGCLSGLVLLHLQACKMLKS-LPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNS 645 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 645 (945)
|++|+.|+|+.|.+....++ -..+++|+.|.|+.|..... +-..+-.+|+|+.|+|.+|+...........++.|++
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 44444444444444322221 12344555555555543211 1111223455555555555422222222233444555
Q ss_pred ccccCCCCccCC--ccccCCCCCcEEEcccCC
Q 041079 646 LYAYGTASSEVP--SSIVRSNNFRFLSFRESR 675 (945)
Q Consensus 646 L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~ 675 (945)
|+|++|.+...+ ...+.++.|+.|+++.|.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccC
Confidence 555555544444 233444444444444443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.1e-10 Score=122.39 Aligned_cols=203 Identities=17% Similarity=0.159 Sum_probs=136.0
Q ss_pred ccccccceeeecCCCCCCCCC---CccCCcccceEeecCCCCcc---cCccccCCccccEEeccccccccccCcc-cCCC
Q 041079 544 PYLKELVILNLRGCKGLKKLP---EISSLSNIEKIILSGTAIEE---LPSSVGCLSGLVLLHLQACKMLKSLPCS-LFKL 616 (945)
Q Consensus 544 ~~l~~L~~L~L~~~~~l~~lp---~~~~l~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l 616 (945)
.++++|+...|.+|.. ...+ ....|++++.||||+|-+.. +-.-...|++|+.|+|+.|....-.... -..+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4567788888877652 2333 23458999999999987763 3334678899999999998743222111 1257
Q ss_pred CCCCEEeccCCCCCCc-cCCccCCcccCccccccCCC-CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCC
Q 041079 617 KSLEDLNLCRCSNLRR-FPEEIGNVEASNSLYAYGTA-SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLH 694 (945)
Q Consensus 617 ~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 694 (945)
+.|+.|.|++|..... +-..+...++|+.|++..|. +..-..+..-+..|+.|+|++|..+... .-...+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----ccccccccc
Confidence 8899999999987632 22234456778999999884 3322233445678888888888753321 112345678
Q ss_pred CCCEEeccCCCCCc--cCcc-----cCCCCCCCEEECCCCCCcccc--hhhhCCCCCCEEeeccCCC
Q 041079 695 SLKSLCLHNCGVTR--LPES-----LGRLSLLEELDLRRNNFERVP--ESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 695 ~L~~L~L~~~~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~ 752 (945)
.|..|+++.|.+.+ +|+. ...+++|++|+++.|++...+ ..+..+++|+.|.+..|..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 88888888888874 4544 456788889999888887665 2455677777777666554
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=1.2e-07 Score=102.23 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC---HHHHHHH--
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD---IDLNFRR-- 232 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~l~~~-- 232 (945)
..++.|+|++|+||||+++.+++.....=-..+++.+ .. .+...+...+...++........ ...+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 5589999999999999999999886532111222221 11 34456677777666443222111 2222222
Q ss_pred ---HcCCCcEEEEecCCChH--HHHHHhc---CCCCCCCCCeEEEEecCccccccC----------CcceEEEcCCCCHH
Q 041079 233 ---LSRMKVLIVFDDVTCFR--QIKSLIR---SPDWFMADSRIIITTRNKQVLRNC----------SVKEIYEMKELRDD 294 (945)
Q Consensus 233 ---L~~kr~LlVLDdv~~~~--~l~~l~~---~~~~~~~gs~IIiTTR~~~v~~~~----------~~~~~~~l~~L~~~ 294 (945)
..+++.++|+||++... .++.+.. ..........|++|.... +.... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25788999999998753 3444432 111112223455555432 11110 12346789999999
Q ss_pred HHHHHHHHhhhcCCC--CCccHHHHHHHHHHHhcCCcchHHHhhccc
Q 041079 295 HALELFSRHAFKQNH--PDVGYEELSSRVIQYAQGVPLALEILGCSL 339 (945)
Q Consensus 295 ea~~Lf~~~af~~~~--~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 339 (945)
|..+++...+..... ...-..+....|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998876643221 111234788899999999999999888765
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.7e-10 Score=113.69 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=18.8
Q ss_pred CcCcccccccc--------ccCCCCCccccccCcceeEEEecCC
Q 041079 496 MPKLRFLKFYR--------SSINGENKCKQQHHGKLKQIIISAG 531 (945)
Q Consensus 496 ~~~Lr~L~l~~--------~~l~~~~~~~~~~l~~L~~L~Ls~~ 531 (945)
+..|..|.++. |-++..+++.+..+.+|+.+.+|+|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL 224 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc
Confidence 34566666654 2233344445555556666666555
No 44
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.88 E-value=6.6e-08 Score=112.23 Aligned_cols=287 Identities=14% Similarity=0.179 Sum_probs=184.4
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
...+.|-|..-++.+.+... .|.+.|..++|.|||||+.++.. ....=..+.|+....+. .+...+...++..+
T Consensus 17 ~~~~~v~R~rL~~~L~~~~~-~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d----ndp~rF~~yLi~al 90 (894)
T COG2909 17 RPDNYVVRPRLLDRLRRAND-YRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD----NDPARFLSYLIAAL 90 (894)
T ss_pred CcccccccHHHHHHHhcCCC-ceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc----CCHHHHHHHHHHHH
Confidence 56778888877776665433 89999999999999999999988 44555678898643222 55677777777776
Q ss_pred hCCCCccCC-----------------HHHHHHHHc--CCCcEEEEecCCCh------HHHHHHhcCCCCCCCCCeEEEEe
Q 041079 217 LKHENVILD-----------------IDLNFRRLS--RMKVLIVFDDVTCF------RQIKSLIRSPDWFMADSRIIITT 271 (945)
Q Consensus 217 ~~~~~~~~~-----------------~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gs~IIiTT 271 (945)
...-+...+ .+.+...+. .++.++||||..-. ..++.++...+ ++-..||||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeEEEEEe
Confidence 533322111 233333332 46899999997432 23666666554 788999999
Q ss_pred cCccccccC---CcceEEEcC----CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccC-CC
Q 041079 272 RNKQVLRNC---SVKEIYEMK----ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFE-KE 343 (945)
Q Consensus 272 R~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~-~~ 343 (945)
|...-+..- -.+...++. .|+.+|+-++|..... .+ -.+.-++.+.+...|.+-|+..++=.+++ .+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~--Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LP--LDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CC--CChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 987432211 012234443 6899999999987641 11 11344778899999999999998887773 33
Q ss_pred HHHHHHHHHHHHhccCcchhh-hhhhhccCCChhhHhhhhhhcccCCCCChHHHHHHhhhcCCCcccchHHHHhccccee
Q 041079 344 KEVWESAINKLKRFLHPSIQE-VLKVSYDGLDDNEKNIFLDVACFFKGEDVYPVMKFLDASGFYPTTGISVLVDKSLIAI 422 (945)
Q Consensus 344 ~~~w~~~l~~l~~~~~~~i~~-~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~ 422 (945)
.+.-...+... .+.+.+ ...--+|.||++.|..++-+|++..-. +.+...+...+ ....-++.|.+++|+-+
T Consensus 243 ~~q~~~~LsG~----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~-ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 243 AEQSLRGLSGA----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNALTGEE-NGQAMLEELERRGLFLQ 315 (894)
T ss_pred HHHHhhhccch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCC-cHHHHHHHHHhCCCcee
Confidence 33322222211 111111 223346899999999999999884322 12222222111 11223788999998764
Q ss_pred c----CCEEehhHHHHHHHHHHHhhc
Q 041079 423 S----YNKIMMHDLLQELGREIVRQE 444 (945)
Q Consensus 423 ~----~~~~~mHdli~~~~~~i~~~e 444 (945)
- .+.|+.|.+..+|.+.....+
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhccc
Confidence 3 789999999999998877664
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=3e-08 Score=105.84 Aligned_cols=169 Identities=23% Similarity=0.334 Sum_probs=108.4
Q ss_pred CCCCccchHHHH---HHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRV---VAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l---~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+++||.+.-+ .-|.+++.. .....+||++|+||||||+.++......|...- ....++.++.+.
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~i 92 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLREI 92 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHHH
Confidence 445566666544 234455554 667789999999999999999998776665322 111555555544
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEE--EecCcccccc---CCcce
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIII--TTRNKQVLRN---CSVKE 284 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v~~~---~~~~~ 284 (945)
+-. .-+.+..+++.+|++|.|.. ..|-+.|++... .|.-|+| ||-++...-. ..-..
T Consensus 93 ~e~-------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 93 IEE-------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred HHH-------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 321 11234458999999999954 456777877664 6777776 6666543111 12346
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCC-C----ccHHHHHHHHHHHhcCCcc
Q 041079 285 IYEMKELRDDHALELFSRHAFKQNHP-D----VGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~af~~~~~-~----~~~~~l~~~i~~~~~GlPL 330 (945)
++++++|+.+|-.+++.+-+-..... . .-.++....++..++|--.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999999999999998843221111 1 1123456677788887543
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=4.5e-09 Score=113.02 Aligned_cols=282 Identities=20% Similarity=0.221 Sum_probs=185.0
Q ss_pred hhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccC-CHHHHHH
Q 041079 153 SLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVIL-DIDLNFR 231 (945)
Q Consensus 153 ~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~-~~~~l~~ 231 (945)
..+...|.+.++|.|||||||++-.+.. +...|....++.+.....+. ..+...+...+.-...... ....+..
T Consensus 9 ~~~~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~~g~~~~~~~~~ 83 (414)
T COG3903 9 DLLTALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQPGDSAVDTLVR 83 (414)
T ss_pred hhhhhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccccchHHHHHHHH
Confidence 3444478999999999999999999999 88899888877776665444 3333333332332222212 2556777
Q ss_pred HHcCCCcEEEEecCCChHH-HHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcCCCCHH-HHHHHHHHhhhcCCC
Q 041079 232 RLSRMKVLIVFDDVTCFRQ-IKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMKELRDD-HALELFSRHAFKQNH 309 (945)
Q Consensus 232 ~L~~kr~LlVLDdv~~~~~-l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~~ 309 (945)
+..++|.++|+||..+... -..+...+....+.-+|+.|+|..-. +..+..+.++.|+.. ++.++|...+.....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 8889999999999866532 23333333333456678999997632 335567888888875 799999877642211
Q ss_pred ---CCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHHHHHHHHH----HHh------ccCcchhhhhhhhccCCChh
Q 041079 310 ---PDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEVWESAINK----LKR------FLHPSIQEVLKVSYDGLDDN 376 (945)
Q Consensus 310 ---~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~----l~~------~~~~~i~~~l~~Sy~~L~~~ 376 (945)
..........+|.+...|.|++|..+++..+.....+....++. ++. ...+.....+..||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 12233467889999999999999999999887666554444332 221 12345667899999999999
Q ss_pred hHhhhhhhcccCCCCChHHHHHHhhhcCC-----CcccchHHHHhcccceec----CCEEehhHHHHHHHHHHHh
Q 041079 377 EKNIFLDVACFFKGEDVYPVMKFLDASGF-----YPTTGISVLVDKSLIAIS----YNKIMMHDLLQELGREIVR 442 (945)
Q Consensus 377 ~k~~fl~~a~f~~~~~~~~l~~~~~~~g~-----~~~~~i~~L~~~sLi~~~----~~~~~mHdli~~~~~~i~~ 442 (945)
++..|-.++.|...++.+.....-....+ ..-..+..+++++++... .-.++.-+-.+.|+.+...
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877632222111111 122346778888887654 2234444555555544443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.4e-09 Score=110.31 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=88.2
Q ss_pred ccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCC
Q 041079 636 EIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGR 715 (945)
Q Consensus 636 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~ 715 (945)
.+..-+.|++|++++|.|..+-.+..-++.++.|+++.|..... ..+..+++|+.|+||+|.++++-.+-..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------QNLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------hhhhhcccceEeecccchhHhhhhhHhh
Confidence 34455779999999999999999998899999999999885322 1255688999999999999888777777
Q ss_pred CCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCC
Q 041079 716 LSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 751 (945)
+-|.+.|.|++|.+..+. .+..|.+|.+||+++|+
T Consensus 351 LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 888999999999888775 77888899999999886
No 48
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=5.1e-08 Score=119.65 Aligned_cols=301 Identities=15% Similarity=0.225 Sum_probs=174.8
Q ss_pred ccchHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhccccce---EE------------EEechhhhh
Q 041079 141 LVGVESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSDFEGS---CF------------LENVREESQ 200 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~---~~------------~~~~~~~s~ 200 (945)
++||+.+++.|...+.. ..++.+.|..|||||+|+++|...+.+++... .| +..+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 78999999999988876 67999999999999999999999876652111 11 001111000
Q ss_pred c-----cCCHHHHHHHHHHHHhCCCCcc--------------------CC-----------HHHHHHHH-cCCCcEEEEe
Q 041079 201 R-----SGGLACLRQELLSKLLKHENVI--------------------LD-----------IDLNFRRL-SRMKVLIVFD 243 (945)
Q Consensus 201 ~-----~~~l~~l~~~ll~~l~~~~~~~--------------------~~-----------~~~l~~~L-~~kr~LlVLD 243 (945)
. .........+++..++...... .. ...+.... +.|+.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 0 0001111122222222111100 00 11122222 4569999999
Q ss_pred cCCChH-----HHHHHhcCCC--CC-CCCCeEEEEecCc--cccccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCcc
Q 041079 244 DVTCFR-----QIKSLIRSPD--WF-MADSRIIITTRNK--QVLRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVG 313 (945)
Q Consensus 244 dv~~~~-----~l~~l~~~~~--~~-~~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 313 (945)
|+.-.+ -++.++.... .+ ..-.-.+.|.+.. .+.........+.+.+|+..+...+.......... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~---~ 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL---L 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---c
Confidence 994322 2444443332 00 0011122233322 11122233468999999999999999887633222 2
Q ss_pred HHHHHHHHHHHhcCCcchHHHhhccccCC-------CHHHHHHHHHHHHhcc-CcchhhhhhhhccCCChhhHhhhhhhc
Q 041079 314 YEELSSRVIQYAQGVPLALEILGCSLFEK-------EKEVWESAINKLKRFL-HPSIQEVLKVSYDGLDDNEKNIFLDVA 385 (945)
Q Consensus 314 ~~~l~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~Sy~~L~~~~k~~fl~~a 385 (945)
..+....|.++.+|+|+.+..+-..+... +...|..-...+.... .+.+.+.+..-.+.||+..|+++-..|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 24678899999999999999888777542 3344544433332221 123455688889999999999999999
Q ss_pred ccCCCCChHHHHHHhhhcCCCcccchHHHHhcccceec---------CC---EEehhHHHHHHHHHHHhhc
Q 041079 386 CFFKGEDVYPVMKFLDASGFYPTTGISVLVDKSLIAIS---------YN---KIMMHDLLQELGREIVRQE 444 (945)
Q Consensus 386 ~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~~---------~~---~~~mHdli~~~~~~i~~~e 444 (945)
|+.+.++.+.+..++.........++-.....++|.+. .. +-..||++|+.+-....++
T Consensus 319 ~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 319 CIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 99999998887777765333322233333333444331 11 1256888888887665543
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=8.8e-11 Score=122.14 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=127.8
Q ss_pred ccCCcccceEeecCCCCc-c----cCccccCCccccEEeccccccccc-------------cCcccCCCCCCCEEeccCC
Q 041079 566 ISSLSNIEKIILSGTAIE-E----LPSSVGCLSGLVLLHLQACKMLKS-------------LPCSLFKLKSLEDLNLCRC 627 (945)
Q Consensus 566 ~~~l~~L~~L~Ls~~~i~-~----lp~~i~~L~~L~~L~L~~~~~l~~-------------lp~~i~~l~~L~~L~Ls~~ 627 (945)
+..+++|++|+||.|.+. . +-.-+.++..|++|.|.+|..-.. ...-+.+-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344567888888888776 2 222345677888888888863211 1122445678999988876
Q ss_pred CCCC----ccCCccCCcccCccccccCCCCcc-----CCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCE
Q 041079 628 SNLR----RFPEEIGNVEASNSLYAYGTASSE-----VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKS 698 (945)
Q Consensus 628 ~~~~----~lp~~l~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 698 (945)
..-. .+...+...+.|+.+.+..|.|.. +...+..+++|+.|++..|.....-. ..+...++.+++|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--VALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--HHHHHHhcccchhee
Confidence 5321 123445666788999998887643 33457789999999999987533211 223445667889999
Q ss_pred EeccCCCCCc-----cCccc-CCCCCCCEEECCCCCCc-----ccchhhhCCCCCCEEeeccCCC
Q 041079 699 LCLHNCGVTR-----LPESL-GRLSLLEELDLRRNNFE-----RVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 699 L~L~~~~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
|++++|.+.. +-..+ ...++|+.|.+.+|.++ .+-.++...+.|..|+|++|..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999883 33333 34789999999999887 3445677899999999999985
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=8.3e-09 Score=101.36 Aligned_cols=55 Identities=29% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCCEEeccCCCCCccC--cccCCCCCCCEEECCCCCCcccc----hhhhCCCCCCEEeec
Q 041079 694 HSLKSLCLHNCGVTRLP--ESLGRLSLLEELDLRRNNFERVP----ESIIQLSKLNYLYLS 748 (945)
Q Consensus 694 ~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp----~~i~~l~~L~~L~L~ 748 (945)
++|+.|++++|++.++- ..+..+++|+.|+|.+|.++.-+ ..+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 34444444444443221 23445566666666666665443 245556666666544
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=3.1e-07 Score=95.99 Aligned_cols=147 Identities=14% Similarity=0.302 Sum_probs=90.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
.+.+.|||++|+|||+||+++++....+...+.|+... .. ......+ .+.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~-------~~~~~~~-----------------~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS-------QYFSPAV-----------------LENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh-------hhhhHHH-----------------Hhhcc-cC
Confidence 56789999999999999999999876666667776521 00 0000111 11222 33
Q ss_pred cEEEEecCCCh---HHHH-HHhcCCCCC-CCCCeEEEEecCc----------cccccCCcceEEEcCCCCHHHHHHHHHH
Q 041079 238 VLIVFDDVTCF---RQIK-SLIRSPDWF-MADSRIIITTRNK----------QVLRNCSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 238 ~LlVLDdv~~~---~~l~-~l~~~~~~~-~~gs~IIiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
-+|||||++.. .+|+ .+...++.. ..|..+||+|.+. .+...++...++++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 58999999763 2333 222212111 2466665554433 3444444556899999999999999999
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 303 HAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 303 ~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.++...-.-+ ++...-+++.+.|..-++
T Consensus 173 ~a~~~~l~l~--~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 173 NAYQRGIELS--DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHHcCCCCC--HHHHHHHHHhccCCHHHH
Confidence 8875432222 356667777777665444
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=2.9e-07 Score=105.06 Aligned_cols=173 Identities=23% Similarity=0.327 Sum_probs=106.5
Q ss_pred CCCCccchHHHHHH---HHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVA---IQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~---l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+++||.+..+.. +.+++.. ...+.++|++|+||||+|+.+++.....|.. +... . .+...+. .
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~-~~~~~ir-~ 79 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----T-SGVKDLR-E 79 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----c-ccHHHHH-H
Confidence 45679999888766 7777766 6678899999999999999999977654422 1111 0 2222221 2
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE--ecCcc--ccc-cCCcce
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT--TRNKQ--VLR-NCSVKE 284 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT--TR~~~--v~~-~~~~~~ 284 (945)
++.... .....+++.+|++|+++.. .+.+.|+..+. .|..++|. |.+.. +.. ......
T Consensus 80 ii~~~~------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 80 VIEEAR------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HHHHHH------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 222111 0112457889999999764 45566665543 35555553 33321 111 111236
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHhcCCcchHHH
Q 041079 285 IYEMKELRDDHALELFSRHAFKQNHPD-VGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
++++.+++.++..+++.+.+....... .-..+....+++.++|.|..+..
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 899999999999999988653211111 12245677889999998876533
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.9e-08 Score=98.82 Aligned_cols=104 Identities=25% Similarity=0.283 Sum_probs=39.2
Q ss_pred cCccccccCCCCccCCcccc-CCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCccc-CCCCCC
Q 041079 642 ASNSLYAYGTASSEVPSSIV-RSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESL-GRLSLL 719 (945)
Q Consensus 642 ~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L 719 (945)
.+++|+|.++.|..+. .++ .+.+|+.|++++|....- ..+..+++|+.|++++|.++.+++.+ ..+++|
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--------EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----------TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccc--------cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4555555555555443 233 456666666666653211 12456788999999999999887655 468999
Q ss_pred CEEECCCCCCcccc--hhhhCCCCCCEEeeccCCCCc
Q 041079 720 EELDLRRNNFERVP--ESIIQLSKLNYLYLSYCQRLQ 754 (945)
Q Consensus 720 ~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~ 754 (945)
++|+|++|+|..+. ..+..+++|+.|+|.+|+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999999887554 467789999999999998653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=9.9e-08 Score=104.77 Aligned_cols=74 Identities=28% Similarity=0.540 Sum_probs=53.2
Q ss_pred CCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccc
Q 041079 568 SLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLY 647 (945)
Q Consensus 568 ~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 647 (945)
.+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 35677788888887887772 23468888998888888888755 368899999988777777764 44555
Q ss_pred ccCCC
Q 041079 648 AYGTA 652 (945)
Q Consensus 648 l~~~~ 652 (945)
+.++.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 55443
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=6.5e-07 Score=93.79 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=101.9
Q ss_pred CCCcc--chHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 138 NNQLV--GVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 138 ~~~~v--Gr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
.++|+ +.+..++++.+++.. .+.|.|+|.+|+|||+||+.++++........+++. +...... ...++
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~~ 85 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA-------DPEVL 85 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh-------HHHHH
Confidence 34555 345677778777544 778999999999999999999997765544455554 2211111 01111
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---H-HHHHhcCCCC-CCCCCeEEEEecCccc---------ccc
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---Q-IKSLIRSPDW-FMADSRIIITTRNKQV---------LRN 279 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IIiTTR~~~v---------~~~ 279 (945)
..+. +.-+||+||++... . .+.+...+.. ...+.++|+||+.... ...
T Consensus 86 -----------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 86 -----------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred -----------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1122 23489999996542 1 2233322111 1234589998885321 112
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 280 CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 280 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
......+++++++.++...++...+-+...+ --.+....+++.+.|+|..+..+-
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 2223578999999999999988765322211 123556777788888887665543
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.53 E-value=2e-06 Score=100.73 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=125.7
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhcc-----cc--ceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSD-----FE--GSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~s~~~ 202 (945)
.++.+.||+.++++|...|.. ..++-|+|++|.|||+.++.|.+++... .+ .++++. +...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~L---- 827 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNV---- 827 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCcc----
Confidence 557899999999999998876 3467899999999999999999876432 22 133443 2221
Q ss_pred CCHHHHHHHHHHHHhCCCCc-cCC----HHHHHHHHc---CCCcEEEEecCCChH--HHHHHhcCCCCC-CCCCeEEE--
Q 041079 203 GGLACLRQELLSKLLKHENV-ILD----IDLNFRRLS---RMKVLIVFDDVTCFR--QIKSLIRSPDWF-MADSRIII-- 269 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~-~~~----~~~l~~~L~---~kr~LlVLDdv~~~~--~l~~l~~~~~~~-~~gs~IIi-- 269 (945)
.....+...|..++...... ... ...+...+. ....+||||+|+... +-+.|...+.|. ..+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 34455666666666443322 111 233333331 223589999997543 112222111111 24566554
Q ss_pred EecCccc--------cccCCcceEEEcCCCCHHHHHHHHHHhhhcCC-CCCccHHHH-HHHHHHHhcCCcchHHHhhccc
Q 041079 270 TTRNKQV--------LRNCSVKEIYEMKELRDDHALELFSRHAFKQN-HPDVGYEEL-SSRVIQYAQGVPLALEILGCSL 339 (945)
Q Consensus 270 TTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l-~~~i~~~~~GlPLal~~lg~~L 339 (945)
+|.+..+ ...++ ...+..++.+.++-.+++..++-... ..+++..++ |+.++...|-.=.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 3332221 12222 22466799999999999998875321 122222222 3333333333445555443332
Q ss_pred c--C---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhc
Q 041079 340 F--E---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVA 385 (945)
Q Consensus 340 ~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a 385 (945)
. + ...+....+...+.. . .+.-....||.++|.+++.+.
T Consensus 987 EikegskVT~eHVrkAleeiE~---s----rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFD---S----PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHh---h----hHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 123333333333221 1 122233578888777666444
No 57
>PTZ00202 tuzin; Provisional
Probab=98.51 E-value=5.7e-06 Score=90.30 Aligned_cols=188 Identities=14% Similarity=0.168 Sum_probs=113.4
Q ss_pred cccccCCCCCHHH--HHHHHHHHHHhhccc------cCCCCCCCCccchHHHHHHHHhhhcc-----cCEEEEEecCCCc
Q 041079 104 SGFYSQNFRPESE--LIKEVLNQILKRLAE------VFPRDNNNQLVGVESRVVAIQSLLGA-----APLLGIWGIGGIG 170 (945)
Q Consensus 104 ~g~~~~~~~~e~~--~i~~i~~~i~~~l~~------~~~~~~~~~~vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiG 170 (945)
-||.+.+++.+.. .++-.++.+.+.+++ ..|. +...|+||+.++.+|...|.. .+++.|.|++|+|
T Consensus 220 F~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa-~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~G 298 (550)
T PTZ00202 220 FGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPA-VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCG 298 (550)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCC-CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCC
Confidence 4455544433322 233445555555443 3455 778999999999999999975 5699999999999
Q ss_pred HHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccC-C-HHHHHHHH-----c-CCCcEEEE
Q 041079 171 KTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVIL-D-IDLNFRRL-----S-RMKVLIVF 242 (945)
Q Consensus 171 KTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~-~-~~~l~~~L-----~-~kr~LlVL 242 (945)
||||++.+..... ...++.+. .+...+...++.+++....... + ...+.+.+ . +++.+||+
T Consensus 299 KTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 299 KSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999997654 33555544 3557888999999886333221 2 33333332 2 66777765
Q ss_pred e--cCCChHHHHHHhcCCCCCCCCCeEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHh
Q 041079 243 D--DVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 243 D--dv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
- +-++...+-.=.-.+.....-|+|++----+.+-.. ..--+-|-++.++.++|.+.-.+.
T Consensus 368 ~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 368 KLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred EecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 4 333333211111111111345677775544432111 112246899999999998876553
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=4.6e-08 Score=102.25 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=16.6
Q ss_pred ccccceeeecCCCCCCCCC-----CccCCcccceEeecC
Q 041079 546 LKELVILNLRGCKGLKKLP-----EISSLSNIEKIILSG 579 (945)
Q Consensus 546 l~~L~~L~L~~~~~l~~lp-----~~~~l~~L~~L~Ls~ 579 (945)
+..++.|+|+||.....-. .+.+.++|+.-++|.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 4455666666665432211 233344555555554
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=2.5e-08 Score=114.28 Aligned_cols=215 Identities=26% Similarity=0.280 Sum_probs=113.4
Q ss_pred cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcccceEeecCCCCcccCccccCCccccE
Q 041079 519 HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSNIEKIILSGTAIEELPSSVGCLSGLVL 597 (945)
Q Consensus 519 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 597 (945)
.+..++.+.+..+..-. ....+..+++|..|++.+|.. ..+.. +..+++|++|+|++|.|+.+.. +..+..|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~---~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK---ILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh---hhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccccc-hhhccchhh
Confidence 34455555554443211 122345566677777776653 33333 5667777777777777776653 566666777
Q ss_pred EeccccccccccCcccCCCCCCCEEeccCCCCCCccC-CccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCC
Q 041079 598 LHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP-EEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRG 676 (945)
Q Consensus 598 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 676 (945)
|++.+|. +..++. +..+++|+.+++++|.....-+ . +..+.+|+.+++.+|.+..+. .+..+..+..+++..|..
T Consensus 145 L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCc-chhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccc
Confidence 7777766 455543 4446777777777765443222 1 355666667777776655442 222333333334444432
Q ss_pred CccCccccccccccCCCC--CCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCC
Q 041079 677 DKQMGLSLLISLSSDGLH--SLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 677 ~~~~~~~~~~~~~l~~l~--~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 751 (945)
....+ +..+. +|+.+++++|.+..++..+..+..+..|++..|.+..+. .+...+.+..+.+..++
T Consensus 221 ~~~~~--------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 221 SKLEG--------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred eeccC--------cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 11110 11112 256666666666665555555666666666666555333 23333344444444443
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=2.3e-07 Score=111.27 Aligned_cols=106 Identities=23% Similarity=0.312 Sum_probs=75.1
Q ss_pred ccceEeecCCCCc-ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccccc
Q 041079 571 NIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAY 649 (945)
Q Consensus 571 ~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 649 (945)
.++.|+|++|.+. .+|..++.|++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3566677777766 567777777777777777777666777777777777777777777777777777777777777777
Q ss_pred CCCC-ccCCccccCC-CCCcEEEcccCCC
Q 041079 650 GTAS-SEVPSSIVRS-NNFRFLSFRESRG 676 (945)
Q Consensus 650 ~~~~-~~lp~~l~~l-~~L~~L~l~~~~~ 676 (945)
+|.+ +.+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 7764 3667666543 4566777877764
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=3.8e-06 Score=93.89 Aligned_cols=191 Identities=20% Similarity=0.165 Sum_probs=106.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc-cc-eEEEEechhhhhccCCHHHHHH--
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF-EG-SCFLENVREESQRSGGLACLRQ-- 210 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~s~~~~~l~~l~~-- 210 (945)
..++++|++..++.+..++.. .+.+.++|++|+||||+|+.+++.+...- .. .+++. ..+.... ....+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~~~~~~ 89 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKYLVEDP 89 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhhhhcCc
Confidence 456789999999999998887 34788999999999999999999775432 22 23332 2111100 0000000
Q ss_pred HHHHHHhCCCC-ccCCHHHHHHHH---------cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecCcc-cc
Q 041079 211 ELLSKLLKHEN-VILDIDLNFRRL---------SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRNKQ-VL 277 (945)
Q Consensus 211 ~ll~~l~~~~~-~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~-v~ 277 (945)
.....+..... .....+.+++.+ ...+-+||+||++... ....+...+....+.+++|+||.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000000 000112222111 1334589999997552 23334333333345677888775432 22
Q ss_pred ccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 278 RNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 278 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
... .....+++.+++.++..+++...+-..... -..+....++++++|.+-.+
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 211 223578899999999999988876433322 12456778888888876443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=6.7e-07 Score=98.34 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=92.0
Q ss_pred ccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCC-CCccCCccccCCCCCc
Q 041079 589 VGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGT-ASSEVPSSIVRSNNFR 667 (945)
Q Consensus 589 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~ 667 (945)
+..+.++..|++++| .+..+|. -..+|++|++++|..+..+|..+. .+|+.|.+++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999999 4888883 245799999999999988887653 57888888877 5666664 355
Q ss_pred EEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC---ccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCE
Q 041079 668 FLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT---RLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNY 744 (945)
Q Consensus 668 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~ 744 (945)
.|++.++... .+ ..+| ++|+.|.+.+++-. .+|.. -+++|++|++++|....+|..+. .+|+.
T Consensus 116 ~L~L~~n~~~-~L---~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~ 181 (426)
T PRK15386 116 SLEIKGSATD-SI---KNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQS 181 (426)
T ss_pred eEEeCCCCCc-cc---ccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcE
Confidence 5555543311 00 1111 24566666432211 12211 12467777777666555554332 36666
Q ss_pred EeeccCCCC--c-ccCCcccccceEeeccCcc
Q 041079 745 LYLSYCQRL--Q-SLPELPCNLILLYADHCTV 773 (945)
Q Consensus 745 L~L~~c~~l--~-~lp~l~~~L~~L~~~~c~~ 773 (945)
|+++.|... . ..+.+|+++ .|++.+|-.
T Consensus 182 L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 182 ITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred EEecccccccccCccccccccc-Eechhhhcc
Confidence 666654211 1 112345555 666666633
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.42 E-value=3.5e-06 Score=94.79 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=100.4
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..+++.|++..++++.+.+.. .+-+.++|++|+|||++|++++++....|-... .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~------ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----G------ 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----h------
Confidence 445789999999999887632 356899999999999999999998765542111 0
Q ss_pred cCCHHHHHHHHHHHHhCCCCccCCH-HHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCCC--C
Q 041079 202 SGGLACLRQELLSKLLKHENVILDI-DLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~~l~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~--~ 262 (945)
..+........ .... ..+...-...+.+|+||+++.. ..+..++...+.+ .
T Consensus 190 ----~~l~~~~~g~~------~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 ----SELVRKYIGEG------ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred ----HHHHHHhhhHH------HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 01111110000 0001 1111112346789999998653 1233333333221 2
Q ss_pred CCCeEEEEecCccc-----cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHhcCCc
Q 041079 263 ADSRIIITTRNKQV-----LRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPD-VGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 263 ~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlP 329 (945)
.+.+||.||..... ......+..++++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 46678888875432 22123456899999999999999998875543322 23 345566666653
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=3.4e-07 Score=109.84 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=77.8
Q ss_pred cccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCc-cCCccccCCCCCcEEEcc
Q 041079 594 GLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASS-EVPSSIVRSNNFRFLSFR 672 (945)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~ 672 (945)
.++.|+|++|...+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788888777778888888888888888888777788888888888888888888754 677778888888888888
Q ss_pred cCCCCccCccccccccccCC-CCCCCEEeccCCCC
Q 041079 673 ESRGDKQMGLSLLISLSSDG-LHSLKSLCLHNCGV 706 (945)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~l 706 (945)
+|..... +|..+.. +.++..+++.+|..
T Consensus 499 ~N~l~g~------iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGR------VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCccccc------CChHHhhccccCceEEecCCcc
Confidence 8764333 3333333 24566777777653
No 65
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=1.6e-06 Score=81.69 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=76.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV 238 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 238 (945)
+++.|.|+.|+|||||+++++.+.. .-...+++........ ... . .+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~------~~~--~-~~---------~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDR------RLA--D-PD---------LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHH------HHh--h-hh---------hHHHHHHhhccCCc
Confidence 6899999999999999999998765 3344555542111110 000 0 00 01223333344788
Q ss_pred EEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcccccc------CCcceEEEcCCCCHHHH
Q 041079 239 LIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRN------CSVKEIYEMKELRDDHA 296 (945)
Q Consensus 239 LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 296 (945)
+|+||++.....|...+..+-..++..+|++|+.....+.. .|....+++.+|+..|-
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999998887777666555444567899999997765532 12334689999998774
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.8e-06 Score=92.71 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=108.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc---------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF---------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~ 192 (945)
..++++|.+..++.+.+.+.. ...+.++|+.|+||||+|+.+++.+.... ....++
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 557899999999999988876 45678999999999999999998764211 011111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... ..+.. .++++..+... -..+++-++|+|+++... .++.++..+....+..++|++
T Consensus 94 ~~----~~~-~~v~~-ir~i~~~~~~~------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 94 DA----ASR-TKVEE-MREILDNIYYS------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred cc----ccc-CCHHH-HHHHHHHHhcC------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 10 000 11111 11221111000 012355699999998764 466677666555566777777
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
|.+.+ +... .+....+++++++.++..+.+...+-..+..- ..+.+..|++.++|.|..
T Consensus 156 t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 156 TTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred cCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 75432 3222 12236899999999999998887664432111 235567788899998753
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=5.7e-08 Score=111.35 Aligned_cols=195 Identities=26% Similarity=0.251 Sum_probs=137.4
Q ss_pred cccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 545 YLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
.+..+..++++.+........+..+++|..|++.+|.|+.+...+..+++|++|++++|. ++.+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhee
Confidence 345555566777665443445677888999999999888887768888899999999887 566553 567788889999
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
++|.... + ..+..+.+|+.+++++|.+..+... +..+.+|+.+.+.+|....... +..+..+..+++.+
T Consensus 148 ~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--------~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 148 SGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--------LDLLKKLVLLSLLD 217 (414)
T ss_pred ccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--------hHHHHHHHHhhccc
Confidence 8876543 2 3345578888888888888877664 5778888888888877432211 22344455557777
Q ss_pred CCCCccCcccCCCC--CCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 704 CGVTRLPESLGRLS--LLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 704 ~~l~~lp~~l~~l~--~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
|.+..+-. +..+. +|+.|++++|.+..++..+..+.++..|++.+++.
T Consensus 218 n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 218 NKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 77764421 22223 38888899998888877778888888888888763
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=9e-09 Score=104.69 Aligned_cols=174 Identities=20% Similarity=0.215 Sum_probs=95.2
Q ss_pred ccceEeecCCCCc--ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCC--ccCCcccCccc
Q 041079 571 NIEKIILSGTAIE--ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPE--EIGNVEASNSL 646 (945)
Q Consensus 571 ~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L 646 (945)
.|++||||++.|+ .+.--+..+++|+.|.|.++..-..+-..|.+-.+|+.|+|++|+..+...- .+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3556666666555 3444455666777777777665444555566667777777777765543221 13334444444
Q ss_pred cccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC----ccCcccCCCCCCCEE
Q 041079 647 YAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT----RLPESLGRLSLLEEL 722 (945)
Q Consensus 647 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~----~lp~~l~~l~~L~~L 722 (945)
+++.+. ..... .... -..+ -++|+.|+|+++.-. .+..-...+++|.+|
T Consensus 266 NlsWc~-----------------------l~~~~-Vtv~-V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 266 NLSWCF-----------------------LFTEK-VTVA-VAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred CchHhh-----------------------ccchh-hhHH-Hhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 444433 21110 0000 0000 124555555554211 222233567788888
Q ss_pred ECCCCC-Cc-ccchhhhCCCCCCEEeeccCCCCcccCC------cccccceEeeccCcc
Q 041079 723 DLRRNN-FE-RVPESIIQLSKLNYLYLSYCQRLQSLPE------LPCNLILLYADHCTV 773 (945)
Q Consensus 723 ~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~------l~~~L~~L~~~~c~~ 773 (945)
|||.|. ++ ..-..+.+++.|++|.++.|..+ +|+ -.|+|.+|++.+|-+
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 888773 33 34456678888888888888632 222 247888899888865
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=3.8e-06 Score=80.98 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=72.1
Q ss_pred cchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCC
Q 041079 142 VGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKH 219 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~ 219 (945)
+|++..+.++...+.. .+.+.|+|.+|+||||+|+++++.+...-..++++. ..+.... ..........
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~~~~---- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELFGHF---- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHhhhh----
Confidence 4788899999988877 789999999999999999999998753333344443 2221111 0000000000
Q ss_pred CCccCCHHHHHHHHcCCCcEEEEecCCCh-----HHHHHHhcCCCCC---CCCCeEEEEecCcc
Q 041079 220 ENVILDIDLNFRRLSRMKVLIVFDDVTCF-----RQIKSLIRSPDWF---MADSRIIITTRNKQ 275 (945)
Q Consensus 220 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~l~~l~~~~~~~---~~gs~IIiTTR~~~ 275 (945)
............++.++|+||++.. ..+.......... ..+.+||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 2233333333221 36778888888653
No 70
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.5e-05 Score=86.83 Aligned_cols=190 Identities=14% Similarity=0.150 Sum_probs=109.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc--cceEE--------EEe----chhh-
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF--EGSCF--------LEN----VREE- 198 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~--------~~~----~~~~- 198 (945)
..++++|.+...+.+.+.+.. .....++|+.|+||||+|..+++.+-.+= ..... ++. .+..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 567899999999999998887 55788999999999999999998763211 10000 000 0000
Q ss_pred hhccCCHHHHHHHHHHHHhCCCC---ccCCHHHHHH---HH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCC
Q 041079 199 SQRSGGLACLRQELLSKLLKHEN---VILDIDLNFR---RL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADS 265 (945)
Q Consensus 199 s~~~~~l~~l~~~ll~~l~~~~~---~~~~~~~l~~---~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 265 (945)
...++++..+.... ..... ..-..+.+++ .+ .+.+.++|+|+++.. .....|+..+....+++
T Consensus 97 ~~~HPDl~~i~~~~----~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 97 AGAHGGLLTLERSW----NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred ccCCCCeEEEeccc----ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 00000100000000 00000 0001233332 22 245678999999754 34555555444334567
Q ss_pred eEEEEecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 266 RIIITTRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 266 ~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
.+|++|.+.+ +... ......+.+.+++.++..+++...... .. .+....++..++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777777654 3222 223468999999999999999875411 11 1222678999999998655443
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.34 E-value=2.9e-06 Score=85.18 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=93.4
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
..++|||.+.-++.+.-++.. ...+.+||++|+||||||..+++.....|.. ... ...+ ...++.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i~---k~~dl~ 93 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAIE---KAGDLA 93 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC-----SCHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhhh---hHHHHH
Confidence 668999999999988766543 4578999999999999999999988777631 111 0011 111121
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCC--------CCCC-----------eEE
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWF--------MADS-----------RII 268 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~--------~~gs-----------~II 268 (945)
. ++ ..+ .++-+|.+|.+.... +-+.|.+....+ ++++ -|=
T Consensus 94 ~-il-----------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 94 A-IL-----------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp H-HH-----------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred H-HH-----------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 1 11 112 245578889997643 333443332211 2222 233
Q ss_pred EEecCccccccC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 269 ITTRNKQVLRNC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 269 iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.|||...+..-. ...-+.+++..+.+|-.++..+.+-.-+ -+-.++.+.+|++++.|-|--.
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHH
Confidence 577765443222 1223568999999999999988774322 2223578899999999999543
No 72
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=5.1e-06 Score=97.24 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=109.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||.+..++.|.+.+.. ...+.++|..|+||||+|+.+.+.+... |...+.+
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 557899999999999999887 4566899999999999999999866321 1111221
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. +.. .++..+. +++..... .-..++.-++|||+++... .+..|+..+....+..++|+|
T Consensus 94 DA----as~-rgVDdIR-eLIe~a~~------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 94 DA----ASN-RGVDEMA-ALLERAVY------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred cc----ccc-ccHHHHH-HHHHHHHh------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 10 001 1222211 11111100 0012445688899998764 366666655544567888888
Q ss_pred ecCcccc-cc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 271 TRNKQVL-RN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 271 TR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
|++.+-. .. ..-...++++.++.++..+.+.+.+-..... -..+....|++.++|..
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSM 214 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 8776432 11 1223689999999999999998876433221 12456778888888865
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.34 E-value=1.1e-05 Score=94.07 Aligned_cols=172 Identities=18% Similarity=0.208 Sum_probs=106.5
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
..++++|.+..++++.+++.. .+.+.|+|++|+||||+|+++++.+. |+. +.+ +. +.. .... ...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---sd~-r~~~-~i~ 82 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---SDQ-RTAD-VIE 82 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---ccc-ccHH-HHH
Confidence 556799999999999998864 57899999999999999999999873 322 122 11 111 1112 222
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHc-CCCcEEEEecCCChH------HHHHHhcCCCCCCCCCeEEEEecCccccc---cC
Q 041079 211 ELLSKLLKHENVILDIDLNFRRLS-RMKVLIVFDDVTCFR------QIKSLIRSPDWFMADSRIIITTRNKQVLR---NC 280 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IIiTTR~~~v~~---~~ 280 (945)
.++....... .+. .++-+||+|+++... .++.+..... ..+..||+|+.+..-.. ..
T Consensus 83 ~~i~~~~~~~-----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 83 RVAGEAATSG-----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHHhhccC-----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 2222221110 111 367899999997642 2444443332 23455777765432111 11
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 281 SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 281 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.....+++++++.++....+...+......-+ .+....|++.++|..-.+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSA 199 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 23467899999999999988877644332221 466788889998866544
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1e-05 Score=93.73 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=110.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc--cccceEEEEechh-h------------
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS--DFEGSCFLENVRE-E------------ 198 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~-~------------ 198 (945)
..++++|.+..++.|...+.. ...+.++|++|+||||+|+.+++.+.. .+...|+.+.... .
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 556789999999999988877 456699999999999999999987642 2222333221000 0
Q ss_pred -hhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-
Q 041079 199 -SQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK- 274 (945)
Q Consensus 199 -s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~- 274 (945)
+.. .++..+ +++...+.. .-..+++-++|+|+++.. ..++.|+..+....+...+|++|...
T Consensus 92 ~~~~-~~vd~i-R~l~~~~~~------------~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 92 AASN-NSVEDV-RDLREKVLL------------APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred cccc-CCHHHH-HHHHHHHhh------------ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 000 111111 111111100 001245668999999755 44777776665444556666666433
Q ss_pred cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 275 QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 275 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.+.... .....+++.+++.++..+.+.+.+-+.+... ..+....|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 332222 2346899999999999999988775433221 2456788999999987543
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.7e-06 Score=93.99 Aligned_cols=175 Identities=20% Similarity=0.220 Sum_probs=109.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||.+...+.|.+++.. ...+.++|+.|+||||+|+.+++.+-.. |...+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 557899999999999999877 5677999999999999999999876321 1111222
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. +.. .++..+. +++..+. ..-..+++-++|+|+|+.. .....|+..+....++.++|++
T Consensus 93 DA----As~-~~VddIR-eli~~~~------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 93 DA----ASR-TKVEDTR-ELLDNVP------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred cc----ccc-CCHHHHH-HHHHHHh------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 10 000 1222221 1111110 0112356678999999765 3456666555444466788888
Q ss_pred ecCccccc-c-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 271 TRNKQVLR-N-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 271 TR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
|.+..-.. . ......+++++++.++..+.+.+.+-+.+.. -..+....|++.++|.+..
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 77643211 1 1233689999999999999888776433221 1235567888899987643
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=95.63 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=112.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc-c--------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD-F--------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F--------------------~~~~~~ 192 (945)
..+++||.+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+... . ...+++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 557899999999999988876 4556899999999999999999876432 1 111111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+ +++...+. ..-..+++-++|||+++.. ...+.|+..+.......++|++
T Consensus 94 dA----as~-~kVDdI-ReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DA----ASR-TKVDDT-RELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred cc----ccc-cCHHHH-HHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 10 000 122222 22222221 0112467789999999764 4577777666554566777776
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
|.+.+ +... ......|++++|+.++..+.+.+.+-.... .-..+....|++.++|.|.-+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66543 3322 122368999999999999998876633221 122456788999999988533
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=7.4e-06 Score=98.41 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=98.7
Q ss_pred CCCCccchHHHHH---HHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVV---AIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~---~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..++++|.+..+. .+.+.+.. ...+.++|++|+||||+|+.+++.....|. .+... . .++..+. +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~---~~i~dir-~ 95 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L---AGVKDLR-A 95 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h---hhhHHHH-H
Confidence 4567899988774 45555655 567889999999999999999998765552 12110 0 1222111 1
Q ss_pred HHHHHhCCCCccCCHHHHHHHH--cCCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEe--cCcc--cccc-CCc
Q 041079 212 LLSKLLKHENVILDIDLNFRRL--SRMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITT--RNKQ--VLRN-CSV 282 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTT--R~~~--v~~~-~~~ 282 (945)
.+.. ..+.+ .+++.+|||||++. ..+.+.|+.... .|+.++|++ .+.. +... ...
T Consensus 96 ~i~~-------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 96 EVDR-------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred HHHH-------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc
Confidence 1111 11111 24678999999974 445666665443 455555543 3321 1111 112
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhhcC-----CCCCccHHHHHHHHHHHhcCCc
Q 041079 283 KEIYEMKELRDDHALELFSRHAFKQ-----NHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 283 ~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~GlP 329 (945)
..++.+++|+.++...++.+.+-.. .....-..+....+++++.|..
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 3579999999999999998765310 1111122455677788887764
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.5e-06 Score=94.24 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=109.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc--------------------------cc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD--------------------------FE 187 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~--------------------------F~ 187 (945)
..+++||-+..++.|.+.+.. ...+.++|..|+||||+|+.+++.+-.. |.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 557899999999999999887 4567899999999999999999876421 00
Q ss_pred ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCC
Q 041079 188 GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADS 265 (945)
Q Consensus 188 ~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 265 (945)
..+.+... .. .++..+.+ ++..+.. .-..++.-++|+|+++.. .....|+..+.....+.
T Consensus 94 DviEIdAa----s~-~gVDdIRe-Lie~~~~------------~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v 155 (700)
T PRK12323 94 DYIEMDAA----SN-RGVDEMAQ-LLDKAVY------------APTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHV 155 (700)
T ss_pred cceEeccc----cc-CCHHHHHH-HHHHHHh------------chhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCc
Confidence 11111100 00 11211111 1111100 011355668999999765 45777777766555667
Q ss_pred eEEEEecCc-cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 266 RIIITTRNK-QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 266 ~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
++|++|.+. .+.... .-...+.++.++.++..+.+.+.+-...... ..+....|++.++|.|...
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 766666544 333221 1235899999999999998887664322211 1345678899999988543
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=86.96 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=109.9
Q ss_pred CCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc-----cccceEEEEechhhhhccCCHHHHHH
Q 041079 139 NQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS-----DFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~-----~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
++++|.+..++.+...+.. .+...++|+.|+||||+|+.++..+-. .++....+.... ... ..+..+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~-i~v~~ir- 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKS-IGVDDIR- 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCC-CCHHHHH-
Confidence 5678999999999998876 667789999999999999999987532 222222221110 111 2333322
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCC--ChHHHHHHhcCCCCCCCCCeEEEEecCcccc-cc-CCcceEE
Q 041079 211 ELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVT--CFRQIKSLIRSPDWFMADSRIIITTRNKQVL-RN-CSVKEIY 286 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~~~~~ 286 (945)
++...+... -..+++-++|+|+++ +...+..|+..+....+++.+|++|.+.+.+ .. ....+.+
T Consensus 80 ~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 80 NIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 222222111 012344556666654 4556778887777667889999888765422 21 1234689
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHh
Q 041079 287 EMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEIL 335 (945)
Q Consensus 287 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 335 (945)
++.+++.++..+.+.... .. . ..+.+..++.+++|.|..+...
T Consensus 148 ~~~~~~~~~~~~~l~~~~-~~--~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKY-ND--I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eCCCcCHHHHHHHHHHHh-cC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988776543 11 1 1234667889999988655433
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.28 E-value=8.9e-06 Score=89.71 Aligned_cols=177 Identities=18% Similarity=0.261 Sum_probs=105.7
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
..++++|.+..++.|..++.. .+.+.++|++|+||||+|+.+++.+.. .|...+.--+ .+.. .+...+.. .+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~-~~~~~vr~-~i 85 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDD-RGIDVVRN-KI 85 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccc-ccHHHHHH-HH
Confidence 556789999999999888776 556789999999999999999998633 3332211111 1111 23332222 22
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecCcc-ccccC-CcceEEEcC
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRNKQ-VLRNC-SVKEIYEMK 289 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~ 289 (945)
.......... -.++.-++|||+++... +...|........+.+++|+++.... +.... .....++++
T Consensus 86 ~~~~~~~~~~---------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 86 KMFAQKKVTL---------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred HHHHhccccC---------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 2211110000 01346689999997653 33444443333346678887775432 21111 123478999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 290 ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 290 ~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
+++.++..+.+...+-+.+..-+ .+....+++.++|..
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDM 194 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 99999999988887743322211 355678888888865
No 81
>PRK08727 hypothetical protein; Validated
Probab=98.28 E-value=1e-05 Score=84.77 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCccchH-HHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHH
Q 041079 139 NQLVGVE-SRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSK 215 (945)
Q Consensus 139 ~~~vGr~-~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~ 215 (945)
++|++.. ..+..+..+... ...+.|+|.+|+|||+||+++++....+...+.|+.. .+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~----------~~~~~~-- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA----------AAGRLR-- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH----------hhhhHH--
Confidence 4555443 444444444333 4579999999999999999999987666556666641 11 111110
Q ss_pred HhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---HH-HHHhcCCCC-CCCCCeEEEEecCcc---------ccccCC
Q 041079 216 LLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---QI-KSLIRSPDW-FMADSRIIITTRNKQ---------VLRNCS 281 (945)
Q Consensus 216 l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l-~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~ 281 (945)
...+.+ .+.-+||+||++... .+ +.+....+. ...|..||+||+... +.....
T Consensus 86 ------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 86 ------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred ------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 011122 234589999996431 12 222222111 124667999998532 112222
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 282 VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
....+++++++.++-.+++.+++....-.- ..+....+++.+.|-.
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l--~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGLAL--DEAAIDWLLTHGEREL 198 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCH
Confidence 345899999999999999998775432211 1355666777766544
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.8e-05 Score=91.74 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=107.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||-+..++.+...+.. ...+.++|+.|+||||+|+.+++.+... |...+.+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 557899999999999998877 3457899999999999999999866421 1222222
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+ ++++..+.. .-..+++-++|+|+++.. ...+.|+..+......+.+|++
T Consensus 94 da----as~-~gvd~i-r~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DA----ASR-TGVEET-KEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ec----ccc-cCHHHH-HHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 10 011 222221 122221110 012356779999999754 4466676666544456666655
Q ss_pred ecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 271 TRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 271 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
|.+. .+... ......+++++++.++..+.+.+.+-+.+. .-..+....|++.++|.+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 5443 33322 123468999999999988887775533221 1123456778888888653
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.27 E-value=1.4e-05 Score=88.60 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=106.4
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
..++++|++..++.+..++.. .+.+.++|.+|+||||+|+.+++.+........++.. . .+.. .+...+...+ .
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~-~~~~~~~~~i-~ 90 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDE-RGIDVIRNKI-K 90 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccc-cchHHHHHHH-H
Confidence 456789999999999999876 5568999999999999999999976433211122211 0 0111 1222121111 1
Q ss_pred HHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-cccc-CCcceEEEcCC
Q 041079 215 KLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLRN-CSVKEIYEMKE 290 (945)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~~ 290 (945)
....... .....+-++++|+++.. +..+.+........+.+++|+++.... +... ......+++++
T Consensus 91 ~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 91 EFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred HHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 1111100 00123568999998754 234444444444445677887775332 2111 11234689999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 291 LRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 291 L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
++.++....+...+-..+..- ..+....+++.++|.+.-
T Consensus 161 l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 999999999888775433221 245677888889887754
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=7.2e-07 Score=71.88 Aligned_cols=58 Identities=40% Similarity=0.556 Sum_probs=51.0
Q ss_pred CCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCC
Q 041079 694 HSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 694 ~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 751 (945)
++|+.|++++|++..+|. .+..+++|++|++++|+++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478899999999998884 77889999999999999998874 77899999999999986
No 85
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.6e-05 Score=85.44 Aligned_cols=183 Identities=16% Similarity=0.236 Sum_probs=119.9
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhhccCCHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFEG--SCFLENVREESQRSGGLACL 208 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~l~~l 208 (945)
.++.+.+|+.+++++...|.. ..-+.|+|.+|.|||+.++.+++++...... .+++. +... .....+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~----~t~~~i 89 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLEL----RTPYQV 89 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeC----CCHHHH
Confidence 445699999999999988876 4459999999999999999999988776443 35554 3222 566788
Q ss_pred HHHHHHHHhCCCCccCC----HHHHHHHHc--CCCcEEEEecCCChH-----HHHHHhcCCCCCCCCCeEEE--EecCcc
Q 041079 209 RQELLSKLLKHENVILD----IDLNFRRLS--RMKVLIVFDDVTCFR-----QIKSLIRSPDWFMADSRIII--TTRNKQ 275 (945)
Q Consensus 209 ~~~ll~~l~~~~~~~~~----~~~l~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~IIi--TTR~~~ 275 (945)
...++.++......... ...+.+.+. ++.+++|||+++... .+-.|....... .++|++ .+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 88888877633332222 455566653 578999999996543 233444333222 454433 333332
Q ss_pred cc--------ccCCcceEEEcCCCCHHHHHHHHHHhh---hcCCCCCccHHHHHHHHHHHhcC
Q 041079 276 VL--------RNCSVKEIYEMKELRDDHALELFSRHA---FKQNHPDVGYEELSSRVIQYAQG 327 (945)
Q Consensus 276 v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~G 327 (945)
+. ...+.. .+..++-+.+|-.+++..++ |......++.-+++..++.+-+|
T Consensus 168 ~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 168 FLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 22 222222 36788888888888888765 44455556666677777777665
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.3e-05 Score=90.09 Aligned_cols=180 Identities=18% Similarity=0.207 Sum_probs=106.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc----c-----------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD----F-----------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~----F-----------------~~~~~~ 192 (945)
..+++||.+...+.|...+.. ...+.++|++|+||||+|+.+++.+... + .....+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 557899999998888888776 3557899999999999999999865321 1 111122
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. +.. .++..+. ++...... .-..+++-++|+|+++.. .+.+.|+..+....+...+|++
T Consensus 92 ~a----a~~-~gid~iR-~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DA----ASN-RGIDEIR-KIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eC----ccc-CCHHHHH-HHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 11 001 2233222 22211110 012345679999999765 3456666555443344455545
Q ss_pred ecC-ccccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-cchHHHhh
Q 041079 271 TRN-KQVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV-PLALEILG 336 (945)
Q Consensus 271 TR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~lg 336 (945)
|.+ ..+.... .....+++.+++.++....+...+...+.. -..+....|+++++|- +.|+..+-
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 443 2232211 233689999999999988888776433221 1235567788877654 55555543
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=2.9e-05 Score=87.42 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=109.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc----cc-----------------ceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD----FE-----------------GSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~~~~ 192 (945)
..+.++|.+..++.+.+.+.. .+.+.++|++|+||||+|+.++..+... +. ...++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 556789999999999998876 4567899999999999999999876421 11 11222
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
... .. .+... .++++..+... -..+++-++|+|+++.. .....++..+....+.+.+|++
T Consensus 92 ~~~----~~-~~~~~-~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 92 DAA----SN-NGVDD-IREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ecc----cc-CCHHH-HHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 110 00 11111 11222221110 01245568899998765 4466666555544466777777
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
|.+.. +... ......+++++++.++..+.+...+-..+..-+ .+.+..+++.++|.|..+..
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALS 217 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHH
Confidence 75443 2221 122357899999999999998887643332211 35677888999998865533
No 88
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.20 E-value=2.2e-06 Score=86.65 Aligned_cols=46 Identities=35% Similarity=0.525 Sum_probs=34.9
Q ss_pred CccchHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 140 QLVGVESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.||||+.+++++...+.. .+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999932 8899999999999999999999988776
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=5.6e-05 Score=79.33 Aligned_cols=165 Identities=15% Similarity=0.232 Sum_probs=93.5
Q ss_pred CCcc-ch-HHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 139 NQLV-GV-ESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 139 ~~~v-Gr-~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
++|+ |. ...+..+.++... .+.+.|+|++|+|||+||+++++.....-..+.|+.. .... .. ..+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~~---~~----~~~--- 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKRA---WF----VPE--- 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHHh---hh----hHH---
Confidence 3444 52 3344455554433 5789999999999999999999977655444555542 1100 00 011
Q ss_pred HHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh---HHHHH-HhcCCCC-CCCC-CeEEEEecCcc---------cccc
Q 041079 215 KLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF---RQIKS-LIRSPDW-FMAD-SRIIITTRNKQ---------VLRN 279 (945)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~-l~~~~~~-~~~g-s~IIiTTR~~~---------v~~~ 279 (945)
+.+.+.. --+|++||++.. .+|+. +...++. ...| .++|+||+... +...
T Consensus 91 --------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 91 --------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred --------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 1112211 248899999653 22321 1111111 0123 47999998542 2223
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 280 CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 280 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
+...-+++++++++++-.+++.+++....-. --++...-+++.+.|..-+
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHH
Confidence 3344689999999999999998766432211 1245666677777665433
No 90
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2e-05 Score=88.98 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcccc---ceEEEEe-chhhhh---------
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFE---GSCFLEN-VREESQ--------- 200 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~-~~~~s~--------- 200 (945)
..+++||.+..++.|..++.. ...+.++|+.|+||||+|+.+++.+...-. ..|..+. .+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 557799999999999998887 345789999999999999999987643211 0011000 000000
Q ss_pred ---ccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecC-c
Q 041079 201 ---RSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRN-K 274 (945)
Q Consensus 201 ---~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~ 274 (945)
...++..+ +++...+. .....++.-++|+|+++.. +.+++|+..+........+|.+|.+ .
T Consensus 96 daas~~gVd~I-ReL~e~l~------------~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 96 DAASNRGIENI-RELRDNVK------------FAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred chhhcccHHHH-HHHHHHHH------------hhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 00111111 11111110 0112356679999999764 4577777666543345555555544 3
Q ss_pred cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 275 QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 275 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
.+.... .-.+.|.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+.
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 332221 223579999999999988888776433221 124567889999999874
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=2.4e-05 Score=81.20 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=84.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
.+.+.|||..|+|||+|++.++.... ..|+.. ..+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~-----------------~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA-----------------AAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh-----------------hhc--
Confidence 56799999999999999999887642 224431 1111112111 111
Q ss_pred cEEEEecCCCh----HHHHHHhcCCCCCCCCCeEEEEecC---------ccccccCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 238 VLIVFDDVTCF----RQIKSLIRSPDWFMADSRIIITTRN---------KQVLRNCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 238 ~LlVLDdv~~~----~~l~~l~~~~~~~~~gs~IIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
-+|++||++.. +.+-.+..... ..|..||+|++. +.+...+....++++++++.++-.+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999542 22333332222 247789999974 2233333455689999999999999999887
Q ss_pred hcCCCCCccHHHHHHHHHHHhcCCcchHH
Q 041079 305 FKQNHPDVGYEELSSRVIQYAQGVPLALE 333 (945)
Q Consensus 305 f~~~~~~~~~~~l~~~i~~~~~GlPLal~ 333 (945)
-...- .--++...-|++.+.|..-++.
T Consensus 167 ~~~~~--~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 167 ADRQL--YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHcCC--CCCHHHHHHHHHHhhhhHHHHH
Confidence 43221 1124566777777777665544
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=1.5e-05 Score=93.42 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=106.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||.+..++.|..++.. ...+.++|..|+||||+|+.+++.+... |...+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 567899999999999999887 4578999999999999999999865321 1111111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+ ++++.... ..-..+++-++|+|+++... ....|+..+.......++|++
T Consensus 94 da----As~-~gVd~I-Relle~a~------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DA----ASN-TGIDNI-REVLENAQ------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred ec----ccc-CCHHHH-HHHHHHHH------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 10 000 111111 11111110 00012466789999997654 344555544433456677777
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
|.+.+ +... .+....+++..++.++..+.+.+.+-+.+..- ..+....|++.++|.+.-
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRD 216 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHH
Confidence 76543 2211 12224688889999999998887664332211 235677889999988743
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.1e-05 Score=89.27 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=108.3
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcccc-------ceEEEEe-ch---------
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFE-------GSCFLEN-VR--------- 196 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~-~~--------- 196 (945)
...++||-+..++.+...+.. .+.+.++|+.|+||||+|+.+++.+-..-. ..|..+. ..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 557889999999999887766 467899999999999999999987632110 0011000 00
Q ss_pred --h--hhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 197 --E--ESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 197 --~--~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
+ .... .++..+.. ++.... ..-+.+++-++|+|+++.. ..+..|+..+....+.+.+|++
T Consensus 99 v~eidaas~-~~vd~Ir~-iie~a~------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 99 IIEIDAASK-TSVDDIRR-IIESAE------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred EEEeeccCC-CCHHHHHH-HHHHHH------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 0 0000 12222221 111110 0012356778999999874 4477777665544456666654
Q ss_pred e-cCccccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 271 T-RNKQVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 271 T-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
| +.+.+.... .....+++.+++.++..+.+...+-..+..- ..+....|++.++|.+.
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 4 444443322 2335799999999999999988875433221 23456778888988764
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=1.2e-05 Score=76.17 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=71.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-----ccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC----HHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-----FEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD----IDL 228 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----~~~ 228 (945)
.+.+.|+|.+|+|||++++.+++..... -..++|+. . ... .....+...++..+........+ .+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSS-RTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCC-CCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4678999999999999999999976543 23344554 2 222 46788899999988876665223 455
Q ss_pred HHHHHcCCC-cEEEEecCCCh---HHHHHHhcCCCCCCCCCeEEEEecC
Q 041079 229 NFRRLSRMK-VLIVFDDVTCF---RQIKSLIRSPDWFMADSRIIITTRN 273 (945)
Q Consensus 229 l~~~L~~kr-~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IIiTTR~ 273 (945)
+.+.+...+ .+||+|+++.. +.++.+....+ ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 666665554 59999999766 33555544333 567788887765
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.7e-05 Score=91.68 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=109.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||-+..++.|...+.. ...+.++|..|+||||+|+.+++.+-.. |...+.+
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 567899999999999998887 3447899999999999999999865332 1111111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+ ++++..+. ..-..+++-++|+|+++.. ...+.|+..+....+..++|++
T Consensus 94 da----as~-~~Vddi-R~li~~~~------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 94 DA----ASR-TKVEDT-RELLDNVQ------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cc----ccc-CCHHHH-HHHHHHHH------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 10 000 112221 12222111 0112456779999999764 3566666655544456667666
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
|.+.+ +... ..-...|.+++++.++..+.+.+.+-..... ...+....|++.++|.+-.+
T Consensus 156 Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred cCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 65543 3322 1224689999999999999888765332211 12355678899999987533
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=3.4e-05 Score=87.16 Aligned_cols=150 Identities=21% Similarity=0.288 Sum_probs=89.3
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..+++.|++..++++.+.+.. .+-|.++|++|.|||++|++++++....|- .+. ..+....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~~l~~~ 204 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GSELVQK 204 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hHHHhHh
Confidence 345688999999999886632 456899999999999999999998654321 111 1110000
Q ss_pred c-CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HH---HHHHhcCCCCC--C
Q 041079 202 S-GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQ---IKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~-~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~---l~~l~~~~~~~--~ 262 (945)
. .......+. .+...-...+.+|+||+++.. +. +..++...+.+ .
T Consensus 205 ~~g~~~~~i~~----------------~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 205 FIGEGARLVRE----------------LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred hccchHHHHHH----------------HHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 0 000011111 111112346789999999753 11 22333333221 2
Q ss_pred CCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhc
Q 041079 263 ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFK 306 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 306 (945)
.+.+||.||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 35567777765432221 124568999999999999999987744
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=2.2e-05 Score=82.26 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=95.3
Q ss_pred CCCCcc-chH-HHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLV-GVE-SRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~v-Gr~-~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..++|+ |.+ ..+..+.++... .+.+.|+|.+|+|||+||+++++.....-....++... .. ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~----------~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SP----------LLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-Hh----------HHH
Confidence 345555 443 344455555442 67899999999999999999999764332334454321 10 000
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCC-CCCC-eEEEEecCccccc--------c
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWF-MADS-RIIITTRNKQVLR--------N 279 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-~IIiTTR~~~v~~--------~ 279 (945)
+ . .....-+||+||++.. .+.+.+...+... ..|. .+|+|++...... .
T Consensus 85 ~------------------~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 85 F------------------D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred H------------------h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 0 1123447889999643 2222332222111 1344 3666666432111 1
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhcc
Q 041079 280 CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCS 338 (945)
Q Consensus 280 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 338 (945)
+.....++++++++++-..++...+-..... -.++....+++...|++..+..+-..
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 1123688999999988777776644222211 12456777888888888877655543
No 98
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=3.1e-08 Score=105.55 Aligned_cols=300 Identities=18% Similarity=0.191 Sum_probs=172.3
Q ss_pred CccccccccccCCC--CCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--Ccc-CCccc
Q 041079 498 KLRFLKFYRSSING--ENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EIS-SLSNI 572 (945)
Q Consensus 498 ~Lr~L~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~-~l~~L 572 (945)
.|+.|.+++..-.+ .+.....++++++.|.+.+|.++++....+....+.+|++|+|.+|..+.... .+. .+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666676644322 22334567888888888888887776666666778888888888887765543 233 38888
Q ss_pred ceEeecCCC-Ccc--cCccccCCccccEEeccccccccc--cCcccCCCCCCCEEeccCCCCCCccC--CccCCcccCcc
Q 041079 573 EKIILSGTA-IEE--LPSSVGCLSGLVLLHLQACKMLKS--LPCSLFKLKSLEDLNLCRCSNLRRFP--EEIGNVEASNS 645 (945)
Q Consensus 573 ~~L~Ls~~~-i~~--lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~ 645 (945)
++|+++.+. |.. +-.-...+.+|+.+.+++|...+. +-..-+.+.-+..+++..|..++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888888753 221 112233344566666666653221 11111234445566666665443211 11233556777
Q ss_pred ccccCCC-CccCC--ccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC---ccCcccCCCCCC
Q 041079 646 LYAYGTA-SSEVP--SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT---RLPESLGRLSLL 719 (945)
Q Consensus 646 L~l~~~~-~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L 719 (945)
|..+++. +...+ ....+..+|+.|-+++|+.......... -.+.+.|+.|++..|.+. ++...-.+++.|
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML----GRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh----hcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 7766654 22211 1234568899999998886555443221 245778888998888765 244444567889
Q ss_pred CEEECCCCCCc------ccchhhhCCCCCCEEeeccCCCCccc--C--CcccccceEeeccCcccccccCcccceeeeec
Q 041079 720 EELDLRRNNFE------RVPESIIQLSKLNYLYLSYCQRLQSL--P--ELPCNLILLYADHCTVLKSISGLSALEGYVIL 789 (945)
Q Consensus 720 ~~L~Ls~n~l~------~lp~~i~~l~~L~~L~L~~c~~l~~l--p--~l~~~L~~L~~~~c~~L~~l~~l~~l~~~~~~ 789 (945)
+.|.|++|... .+..+-..+..|..|.|++|+.+..- . ..-++|+.+++.+|.....-+ .+. +...+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~-i~~--~~~~l 451 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA-ISR--FATHL 451 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh-hHH--HHhhC
Confidence 99999877432 22334456778888888888754321 1 112356666666665432211 000 22345
Q ss_pred CCCCCCCCccccccC
Q 041079 790 PGNEIPKWFRFQSVG 804 (945)
Q Consensus 790 p~~~iP~wf~~~~~g 804 (945)
|.-.+..+|...+..
T Consensus 452 p~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 452 PNIKVHAYFAPVTPP 466 (483)
T ss_pred ccceehhhccCCCCc
Confidence 666666666665543
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.14 E-value=2.4e-05 Score=80.91 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=88.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEG--SCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 235 (945)
...+.|+|..|+|||.|.+++++.+....+. ++++. ...+...+...+.. .....+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~-----~~~~~~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD-----GEIEEFKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT-----TSHHHHHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc-----ccchhhhhhhh-
Confidence 3468999999999999999999988765443 33432 23344444444433 22556667776
Q ss_pred CCcEEEEecCCCh---HHH-HHHhcCCCC-CCCCCeEEEEecCcc-ccc--------cCCcceEEEcCCCCHHHHHHHHH
Q 041079 236 MKVLIVFDDVTCF---RQI-KSLIRSPDW-FMADSRIIITTRNKQ-VLR--------NCSVKEIYEMKELRDDHALELFS 301 (945)
Q Consensus 236 kr~LlVLDdv~~~---~~l-~~l~~~~~~-~~~gs~IIiTTR~~~-v~~--------~~~~~~~~~l~~L~~~ea~~Lf~ 301 (945)
.-=+|++||++.. ..+ +.+...++. ...|-+||+|++... -+. .....-++++++++.++..+++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 4457889999653 212 222211111 135778999996542 111 11234589999999999999999
Q ss_pred HhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 302 RHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 302 ~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
+.|-...-.- -++++.-+++.+.+..
T Consensus 177 ~~a~~~~~~l--~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 177 KKAKERGIEL--PEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHTT--S---HHHHHHHHHHTTSSH
T ss_pred HHHHHhCCCC--cHHHHHHHHHhhcCCH
Confidence 9885433221 1345555666655443
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.13 E-value=8.8e-06 Score=85.43 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCCccchHHHHHH---HHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVA---IQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~---l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+++||.+..+.+ |.+++.. ...+.+||++|.||||||+.+...-+.+- ..|+.. |........+..
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~dvR~- 208 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTNDVRD- 208 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHHHHH-
Confidence 34556666655433 3344444 66788999999999999999998654332 344442 222122222222
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEE--EecCccccc---cCCcce
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIII--TTRNKQVLR---NCSVKE 284 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v~~---~~~~~~ 284 (945)
++++- +-...+..+|.+|.+|.|.. ..|-+.+++.. ..|.-++| ||.+....- ......
T Consensus 209 ife~a-----------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 209 IFEQA-----------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HHHHH-----------HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccc
Confidence 22211 11234567899999999954 44556666554 37877776 666654311 112345
Q ss_pred EEEcCCCCHHHHHHHHHHh
Q 041079 285 IYEMKELRDDHALELFSRH 303 (945)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~ 303 (945)
++.+++|+.++-..++.+.
T Consensus 275 VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred eeEeccCCHHHHHHHHHHH
Confidence 8999999999999988873
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.7e-06 Score=68.52 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=39.8
Q ss_pred cccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCC
Q 041079 570 SNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCS 628 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 628 (945)
++|++|++++|.|+.+|. .+..+++|++|++++|....--|..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777777777764 56777777777777766433333456777777777777764
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.6e-05 Score=87.12 Aligned_cols=174 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc---------------------cccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS---------------------DFEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~---------------------~F~~~~~~ 192 (945)
..+++||.+..++.+.+.+.. .+.+.++|+.|+||||+|+.++..+-. .+..++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 567899999999999888876 557899999999999999999875421 12222333
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
... .. .++..+. +++...... -..+++-++|+|+++.. +..+.|+..+....+..++|++
T Consensus 91 daa----s~-~~vddIR-~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAA----SN-TSVDDIK-VILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecc----cC-CCHHHHH-HHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 211 11 2333322 222211100 01245668999999654 3466666666555567777776
Q ss_pred ecC-cccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 271 TRN-KQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 271 TR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
|.+ +.+... ......+++.+++.++..+.+.+.+.+.+..- ..+....|++.++|.+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 643 333222 12346799999999999999988775433221 23556788889988764
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=5.5e-05 Score=79.27 Aligned_cols=146 Identities=15% Similarity=0.248 Sum_probs=86.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...+.|+|..|+|||.||+++++.+..+-..++|+.. . .+... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh--------------hHHHHHhhhhCC
Confidence 3678999999999999999999877655455666641 1 11110 012233333333
Q ss_pred cEEEEecCCCh---HHHH-HHhcCCCC-CCCCCeEEEEecCccc---------cccCCcceEEEcCCCCHHHHHHHHHHh
Q 041079 238 VLIVFDDVTCF---RQIK-SLIRSPDW-FMADSRIIITTRNKQV---------LRNCSVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 238 ~LlVLDdv~~~---~~l~-~l~~~~~~-~~~gs~IIiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
+||+||++.. .+++ .+...++. ...|.+||+||+...- ...+....++++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999532 2322 23322221 1346789998875321 111223357899999999999999876
Q ss_pred hhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 304 AFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 304 af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
+......-+ ++...-+++.+.|-.-+
T Consensus 179 a~~~~~~l~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 179 ASRRGLHLT--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 644321111 35566666666665433
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=9.4e-08 Score=97.43 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=102.6
Q ss_pred hhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--CccC
Q 041079 491 DTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EISS 568 (945)
Q Consensus 491 ~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~~ 568 (945)
..++.|.+|+.|.+.++.+.+.+...+.+-.+|+.|+|+.|+.++.....-.+.+++.|..|+|+.|......- .+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 35678899999999999999888888888899999999999887765444456788889999999997654432 1222
Q ss_pred -CcccceEeecCCCC----cccCccccCCccccEEeccccccccc-cCcccCCCCCCCEEeccCCCC
Q 041079 569 -LSNIEKIILSGTAI----EELPSSVGCLSGLVLLHLQACKMLKS-LPCSLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 569 -l~~L~~L~Ls~~~i----~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls~~~~ 629 (945)
-++|..|+|+|+.= ..+.--...+++|..|||++|..++. +-..+.+++.|++|.++.|..
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 46788888888631 12222245678899999998876654 233466788899999988874
No 105
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=6.7e-05 Score=76.01 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=91.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
...+.++|+.|+||||+|+.+.+.+-.. ++...++... ... .+...+. +++..+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~-~~~~~i~-~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS-IKVDQVR-ELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc-CCHHHHH-HHHHHH
Confidence 4678899999999999999999876431 2222222210 000 1221221 122221
Q ss_pred hCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-cccccC-CcceEEEcCCCC
Q 041079 217 LKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK-QVLRNC-SVKEIYEMKELR 292 (945)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~ 292 (945)
... -..+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+.... .....+++.+++
T Consensus 89 ~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 89 SRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred ccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 110 01245668999999764 34666666665555677788777654 222211 233689999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 293 DDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 293 ~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
.++..+.+.+. + .+ .+.+..+++.++|.|..
T Consensus 157 ~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 157 EEALLQWLIRQ--G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCccc
Confidence 99999888776 1 11 35688999999998853
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=4.4e-05 Score=84.39 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc----ccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD----FEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
....++|-+...+.+...+.. ...+.|+|..|+||||+|+.+++.+-.. +........ .+--...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~--------~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP--------DPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC--------CCCCHHH
Confidence 667899999999999999887 4469999999999999999999976442 111100000 0000111
Q ss_pred HHHHHH-------HhC---CCC----ccCC---HHHHHHHH-----cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCC
Q 041079 210 QELLSK-------LLK---HEN----VILD---IDLNFRRL-----SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADS 265 (945)
Q Consensus 210 ~~ll~~-------l~~---~~~----~~~~---~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs 265 (945)
+.+... +.. .+. ..-. ...+.+.+ .+++-++|+|+++... ..+.|+..+.....+.
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 111110 000 000 0011 22223333 3466789999997643 3555555444333455
Q ss_pred eEEEEecCc-cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 266 RIIITTRNK-QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 266 ~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
.+|++|... .+.... .-...+++.+++.++..+++...+... . -..+....+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555433 333222 223589999999999999998743221 1 113456789999999997654443
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=5.5e-05 Score=89.00 Aligned_cols=175 Identities=16% Similarity=0.231 Sum_probs=106.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc--------------------------cc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD--------------------------FE 187 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~--------------------------F~ 187 (945)
..+++||-+..++.|.+.+.. ...+.++|..|+||||+|+.+++.+-.. +.
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 567899999999999999887 4567899999999999999998865321 01
Q ss_pred ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCC
Q 041079 188 GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADS 265 (945)
Q Consensus 188 ~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 265 (945)
....+.. ... .++..+. +++...... -..++.-++|||+|+.. .....|+..+.......
T Consensus 94 D~~elda----as~-~~Vd~iR-eli~~~~~~------------p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~ 155 (618)
T PRK14951 94 DYTELDA----ASN-RGVDEVQ-QLLEQAVYK------------PVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYL 155 (618)
T ss_pred ceeecCc----ccc-cCHHHHH-HHHHHHHhC------------cccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCe
Confidence 1111110 000 1111111 111111000 01234568899999765 34667776665444566
Q ss_pred eEEEEecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 266 RIIITTRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 266 ~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
++|++|.+. .+... ......++++.++.++..+.+.+.+-+.+..- ..+....|++.++|.+.-
T Consensus 156 ~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 156 KFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRD 221 (618)
T ss_pred EEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 777666543 23222 12346899999999999998887764333221 135567888888887643
No 108
>PF14516 AAA_35: AAA-like domain
Probab=98.06 E-value=0.00053 Score=75.83 Aligned_cols=198 Identities=10% Similarity=0.175 Sum_probs=116.6
Q ss_pred CCCCccchHHHHHHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhh-ccCCHHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQ-RSGGLACLRQELLS 214 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~-~~~~l~~l~~~ll~ 214 (945)
+....|.|...-+++.+.+.. ...+.|.|+-.+|||+|...+.++...+=-.+++++ ...... .......+.+.+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHH
Confidence 566788999666666666665 899999999999999999999988765422233443 333222 11345555555544
Q ss_pred HHhCCCCc-----------cCC----HHHHHHHH---cCCCcEEEEecCCChHH----HHHHhcCCC-CCC-------CC
Q 041079 215 KLLKHENV-----------ILD----IDLNFRRL---SRMKVLIVFDDVTCFRQ----IKSLIRSPD-WFM-------AD 264 (945)
Q Consensus 215 ~l~~~~~~-----------~~~----~~~l~~~L---~~kr~LlVLDdv~~~~~----l~~l~~~~~-~~~-------~g 264 (945)
.+...-.. ... ...+.+.+ .+++++|+||+||..-. .+.++..+. |.. ..
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 44332210 111 23333332 26899999999975321 112211110 100 01
Q ss_pred C-e-EEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhc
Q 041079 265 S-R-IIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGC 337 (945)
Q Consensus 265 s-~-IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 337 (945)
. + |++.+........ ......+++++++.+|...|...+-.. - -.+...++...+||+|.-+..++.
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~---~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F---SQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C---CHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 1 2222211111111 123457899999999999998876422 1 122388999999999999999888
Q ss_pred cccC
Q 041079 338 SLFE 341 (945)
Q Consensus 338 ~L~~ 341 (945)
.+..
T Consensus 242 ~l~~ 245 (331)
T PF14516_consen 242 LLVE 245 (331)
T ss_pred HHHH
Confidence 8854
No 109
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=5.8e-05 Score=80.73 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=70.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc--cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHc-
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF--EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLS- 234 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~- 234 (945)
...+.++|++|.||||+|+.+++.+...- ....++. +.. ..+ .....++. ...+++.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--------~~l----~~~~~g~~-----~~~~~~~~~~ 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--------ADL----VGEYIGHT-----AQKTREVIKK 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--------HHh----hhhhccch-----HHHHHHHHHh
Confidence 34678999999999999999998753211 1112221 100 111 11110000 111112221
Q ss_pred CCCcEEEEecCCC----------hHHHHHHhcCCCCCCCCCeEEEEecCccc----------cccCCcceEEEcCCCCHH
Q 041079 235 RMKVLIVFDDVTC----------FRQIKSLIRSPDWFMADSRIIITTRNKQV----------LRNCSVKEIYEMKELRDD 294 (945)
Q Consensus 235 ~kr~LlVLDdv~~----------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v----------~~~~~~~~~~~l~~L~~~ 294 (945)
...-+|++|+++. .++++.++...........+|+++..... ... ....++++.++.+
T Consensus 104 a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~ 181 (261)
T TIGR02881 104 ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVE 181 (261)
T ss_pred ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHH
Confidence 1234889999975 23566666655433333355555543322 111 2346899999999
Q ss_pred HHHHHHHHhhhc
Q 041079 295 HALELFSRHAFK 306 (945)
Q Consensus 295 ea~~Lf~~~af~ 306 (945)
|-.+++.+.+..
T Consensus 182 el~~Il~~~~~~ 193 (261)
T TIGR02881 182 ELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999877743
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=5.1e-05 Score=88.15 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc---------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF---------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~ 192 (945)
..++++|.+..++.+.+.+.. .+.+.++|+.|+||||+|+.+++.+...- ....++
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 567899999999999998865 56788999999999999999998763210 011111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. +.. .++..+ +.+...+... -..+++-++|+|+++.. .....|+..+....+...+|++
T Consensus 94 da----as~-igVd~I-ReIi~~~~~~------------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~ 155 (605)
T PRK05896 94 DA----ASN-NGVDEI-RNIIDNINYL------------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFA 155 (605)
T ss_pred cc----ccc-cCHHHH-HHHHHHHHhc------------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 10 000 111111 1111111100 01223446999999764 3455666544433355666655
Q ss_pred ecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 271 TRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 271 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
|... .+... ......+++.+++.++....+...+-..+..- ..+.+..+++.++|.+.
T Consensus 156 Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR 215 (605)
T PRK05896 156 TTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLR 215 (605)
T ss_pred CCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 5433 33222 12245899999999999988887664322111 13456778888888653
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=4.1e-05 Score=86.93 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc--ccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD--FEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..++++|.+..++.|.+.+.. ...+.++|++|+||||+|+.+++.+... ++..-|.....+. .+.-.....
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~~c~~ 89 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECESCRD 89 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCHHHHH
Confidence 557899999999999998887 3458899999999999999999976431 1000000000000 000000000
Q ss_pred HHHH-------HhCCCC-ccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEec-Ccc
Q 041079 212 LLSK-------LLKHEN-VILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTR-NKQ 275 (945)
Q Consensus 212 ll~~-------l~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR-~~~ 275 (945)
+... +..... ...+...+.+.+ .+++-++|+|+++.. +.++.++..+....+.+.+|++|. ...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 0000 000000 000111122222 245568899999754 356666666554456777766553 333
Q ss_pred ccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 276 VLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 276 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
+.... .....+++++++.++..+.+...+-.... .-..+.+..+++.++|.+-
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 33221 12347899999999998888776532221 1124567888999999775
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.0001 Score=82.79 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=104.9
Q ss_pred CCCccchHHHHHHHHhhhcc------------cCEEEEEecCCCcHHHHHHHHHHHhhcc--------------------
Q 041079 138 NNQLVGVESRVVAIQSLLGA------------APLLGIWGIGGIGKTIIARAIFDKISSD-------------------- 185 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~-------------------- 185 (945)
-++++|-+..++.|.+.+.. .+.+.++|++|+||||+|+.++..+-..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35678988888888888765 2357899999999999999999865332
Q ss_pred ccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCC
Q 041079 186 FEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMA 263 (945)
Q Consensus 186 F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~ 263 (945)
++...++... ... .++..+. ++...+... -..+++-++|+|+++... ....|+..+....+
T Consensus 84 hpD~~~i~~~---~~~-i~i~~iR-~l~~~~~~~------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 84 HPDVRVVAPE---GLS-IGVDEVR-ELVTIAARR------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCCEEEeccc---ccc-CCHHHHH-HHHHHHHhC------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1122222100 000 2222221 222221110 012445578889997653 34556555544456
Q ss_pred CCeEEEEecCc-cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHh
Q 041079 264 DSRIIITTRNK-QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEIL 335 (945)
Q Consensus 264 gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 335 (945)
+..+|++|.+. .+.... .-...+.+.+++.++..+.+.... + . + .+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 77777776664 333221 234689999999999998887432 1 1 1 345778899999999654433
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4.5e-05 Score=89.22 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=106.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||-+..++.+..++.. ...+.++|+.|+||||+|+.+++.+... |...+.+
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 556799999999999998876 4567899999999999999999876322 1111112
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+. +++...... -..+++-++|+|+++... ....|+..+........+|++
T Consensus 94 ~~----~~~-~~vd~ir-~l~~~~~~~------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 94 DA----ASN-TQVDAMR-ELLDNAQYA------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred ec----ccc-CCHHHHH-HHHHHHhhC------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 10 000 1222221 222211100 013566799999998653 366666655544456677766
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
|.+.+ +... ......+++++++.++..+.+.+.+-..+.. -..+....+++.++|.+.
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 65443 2211 1123578999999999998887765332221 123456778888999774
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=5.5e-05 Score=87.88 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=107.4
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
..+++||-+..++.|.+.+.. .....++|+.|+||||+|+.+++.+-.. |.....+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 557899999999999999977 5567899999999999999999865321 2222222
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
... .. .++..+. +++..+... -..++.-++|+|+|+.. .....|+..+....+.+++|++
T Consensus 94 daa----s~-~~v~~iR-~l~~~~~~~------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAA----SR-TKVEDTR-ELLDNIPYA------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccc----cc-CCHHHHH-HHHHHHhhc------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 211 11 2333322 222222110 11245668999999764 4466666655544567777776
Q ss_pred ecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 271 TRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 271 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
|.+. .+... ......+++++++.++..+.+...+-..+..- ..+....|++.++|.+.-
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 6544 22211 11235788999999988877666553322221 134566788888887743
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.99 E-value=0.00011 Score=90.24 Aligned_cols=165 Identities=12% Similarity=0.153 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc-----c-c
Q 041079 116 ELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD-----F-E 187 (945)
Q Consensus 116 ~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 187 (945)
..+++...++..+..+. ..+.++||+.+++++...|.. ..-+.++|.+|+|||++|+.++.++... + .
T Consensus 163 ~~l~~~~~~l~~~~r~~----~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 163 DALEKYTVDLTEKAKNG----KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred hHHHHHhhhHHHHHhcC----CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 35556555655555432 445799999999999998876 5667899999999999999999987432 1 2
Q ss_pred ceEEEEechhhhhc---cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh-----------HHHH
Q 041079 188 GSCFLENVREESQR---SGGLACLRQELLSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF-----------RQIK 252 (945)
Q Consensus 188 ~~~~~~~~~~~s~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~l~ 252 (945)
..+|..+....... ......- ...+.+.+ ..++.+|++|+++.. +.-+
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~-----------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEER-----------------LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHH-----------------HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 33443222111100 0001111 11222222 246889999998632 1122
Q ss_pred HHhcCCCCCCCCC-eEEEEecCcccccc-------CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 253 SLIRSPDWFMADS-RIIITTRNKQVLRN-------CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 253 ~l~~~~~~~~~gs-~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.|.+.+. .|- ++|-+|..++.... ..-.+.++++.++.++..+++....
T Consensus 302 ~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2333332 333 44544443221110 0123578999999999999998654
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=6.4e-05 Score=84.89 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=105.1
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc--------ccceEEEEechhhhhccCCH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD--------FEGSCFLENVREESQRSGGL 205 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~s~~~~~l 205 (945)
..++++|.+..++.+.+.+.. .+.+.++|++|+||||+|+.+++.+... |...++-.+ . ... .+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~-~~~ 90 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASN-NSV 90 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccC-CCH
Confidence 557889999999999999876 5588899999999999999998876431 222221110 0 000 122
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEec-Ccccccc-CC
Q 041079 206 ACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTR-NKQVLRN-CS 281 (945)
Q Consensus 206 ~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR-~~~v~~~-~~ 281 (945)
..+. +++.++... -..+++-++|+|+++.. ..++.+...+....+...+|++|. ...+... ..
T Consensus 91 ~~i~-~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 91 DDIR-NLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHH-HHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 2222 222221100 01234558999998754 335666544433334556665553 3333222 12
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 282 VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
....+++++++.++....+...+...+..- ..+.+..+++.++|.+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 235789999999999988888775433211 13567778888888654
No 117
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=4.8e-05 Score=87.27 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=97.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
.-+.|+|..|.|||+|++++++.+....+ .++++. ...+...+...+.... .....+++.++ .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~-~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEIC-Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhc-c
Confidence 45889999999999999999997754332 233432 2334444444443210 11334444444 3
Q ss_pred CcEEEEecCCChH----HHHHHhcCCCC-CCCCCeEEEEecCcc---------ccccCCcceEEEcCCCCHHHHHHHHHH
Q 041079 237 KVLIVFDDVTCFR----QIKSLIRSPDW-FMADSRIIITTRNKQ---------VLRNCSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 237 r~LlVLDdv~~~~----~l~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
.-+||+||+.... ..+.+...++. ...|..||+|+.... +...+...-++++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4588899995432 22333322211 124557888876432 122222344788999999999999998
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 303 HAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 303 ~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
++-.......-.++...-|++.++|.|-.+.-+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8743221112235678889999999987765544
No 118
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.97 E-value=1.1e-05 Score=87.86 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=61.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC----------H
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD----------I 226 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----------~ 226 (945)
.+..+|+|++|+||||||+++|+.+.. +|+..+|+..+++.. ..+.++++++...+......... .
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 788999999999999999999997754 699999998776632 35677777776432222111111 1
Q ss_pred HHHHHH-HcCCCcEEEEecCCChHH
Q 041079 227 DLNFRR-LSRMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 227 ~~l~~~-L~~kr~LlVLDdv~~~~~ 250 (945)
+..+.. -.+++++|++|++.....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHH
Confidence 111121 368999999999965544
No 119
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.97 E-value=0.00013 Score=83.86 Aligned_cols=154 Identities=16% Similarity=0.286 Sum_probs=90.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccc-----cceEEEEech
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDF-----EGSCFLENVR 196 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~ 196 (945)
...++.|.+..++++.+.+.. .+-+.++|++|.|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 446788899999998887531 46789999999999999999999876542 2334442 21
Q ss_pred hhh--hcc-CCHHHHHHHHHHHHhCCCCccCCHHHHHHH-HcCCCcEEEEecCCChH---------H-----HHHHhcCC
Q 041079 197 EES--QRS-GGLACLRQELLSKLLKHENVILDIDLNFRR-LSRMKVLIVFDDVTCFR---------Q-----IKSLIRSP 258 (945)
Q Consensus 197 ~~s--~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----l~~l~~~~ 258 (945)
... ... .......+.++ ...+.. -.+++++|+||+++..- + +..++..+
T Consensus 259 ~~eLl~kyvGete~~ir~iF-------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIF-------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred chhhcccccchHHHHHHHHH-------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 100 000 00011111111 111111 13578999999996421 1 23444333
Q ss_pred CCCC--CCCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 259 DWFM--ADSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 259 ~~~~--~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+... .+..||.||...+.+. .-..+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 3444555665443322 11345679999999999999999876
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00012 Score=86.25 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcccc---------ceEEEEechhhhh----
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFE---------GSCFLENVREESQ---- 200 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---------~~~~~~~~~~~s~---- 200 (945)
..+++||.+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+-.... .+.+-..++....
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 567899999999999998877 557889999999999999999997643221 0111000000000
Q ss_pred --------ccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEE
Q 041079 201 --------RSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 201 --------~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiT 270 (945)
...++..+. +++..+.. .-..+++-++|+|+++... ..+.|+..+....+.+.+|++
T Consensus 102 Dv~e~~a~s~~gvd~IR-eIie~~~~------------~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 102 DVLEMDAASHTGVDDIR-EIIESVRY------------RPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred ceEEecccccCCHHHHH-HHHHHHHh------------chhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 001111111 11111100 0012345578999996653 466666555544567777665
Q ss_pred e-cCccccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 271 T-RNKQVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 271 T-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
| ..+.+.... .....+++..++.++..+.+.+.+-+....- ..+....|++.++|.+.-+
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDG 230 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 5 333333222 2336899999999999999988764332221 2356778889999987543
No 121
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00011 Score=85.73 Aligned_cols=181 Identities=13% Similarity=0.163 Sum_probs=110.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc---------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF---------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~ 192 (945)
..++++|-+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+-... ..+.++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 456789999999999988876 46788899999999999999998764211 112222
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+. .+...+.. .-..+++-++|+|+++.. +....|+..+....+...+|++
T Consensus 94 d~----a~~-~~Id~iR-~L~~~~~~------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILa 155 (624)
T PRK14959 94 DG----ASN-RGIDDAK-RLKEAIGY------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLA 155 (624)
T ss_pred ec----ccc-cCHHHHH-HHHHHHHh------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEe
Confidence 10 001 1222221 12111110 012356679999999765 4466666655433345666666
Q ss_pred ecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc-chHHHhhc
Q 041079 271 TRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP-LALEILGC 337 (945)
Q Consensus 271 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~ 337 (945)
|.+. .+... ......+++++++.++..+.+...+......- ..+.+..|++.++|.+ .|+..+..
T Consensus 156 Tt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 156 TTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred cCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6553 33322 12235789999999999998887664433211 2356778888888865 56665543
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=9e-05 Score=81.94 Aligned_cols=145 Identities=15% Similarity=0.239 Sum_probs=85.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
..++++|.+...+.+..++.. ..++.++|++|+||||+|+++++.....| ..+. ... .....+...+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i~~~l- 88 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFVRNRL- 88 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHHHHHH-
Confidence 557889999999999988876 45777799999999999999998764322 2222 111 1122222111
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh---HHHHHHhcCCCCCCCCCeEEEEecCcccc-cc-CCcceEEEc
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF---RQIKSLIRSPDWFMADSRIIITTRNKQVL-RN-CSVKEIYEM 288 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~~~~~~l 288 (945)
...... ..+.+.+-++|+|+++.. +..+.+.........++++|+||.....+ .. ......+.+
T Consensus 89 ~~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 89 TRFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred HHHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 111100 001234567899999755 22233333233334678899988754311 11 112246778
Q ss_pred CCCCHHHHHHHHHH
Q 041079 289 KELRDDHALELFSR 302 (945)
Q Consensus 289 ~~L~~~ea~~Lf~~ 302 (945)
+..+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 78888888777654
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0003 Score=80.86 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=105.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc---c-------------------ceEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF---E-------------------GSCF 191 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---~-------------------~~~~ 191 (945)
..++++|.+..++.+.+.+.. ...+.++|+.|+||||+|+.+++.+...= + ....
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 567899999999999999876 45678999999999999999998763210 0 0111
Q ss_pred EEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEE
Q 041079 192 LENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIII 269 (945)
Q Consensus 192 ~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIi 269 (945)
+.. ... .++..+. ++...+. .....+++-++|+|+++.. +..+.|+..+....+...+|+
T Consensus 95 i~g----~~~-~gid~ir-~i~~~l~------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDG----ASH-RGIEDIR-QINETVL------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eec----ccc-CCHHHHH-HHHHHHH------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 110 000 1222221 1111110 0011256678899998754 345556555544445666776
Q ss_pred EecC-cccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 270 TTRN-KQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 270 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
+|.+ ..+... ......++++++++++..+.+...+-+.+.. -..+.+..++++++|.+.
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6643 333222 1234579999999999998887766332211 124567788999998664
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0002 Score=87.35 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc-----------------------cceE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF-----------------------EGSC 190 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-----------------------~~~~ 190 (945)
..+++||.+..++.|...+.. ...+.++|..|+||||+|+.+++.+.... ..++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 556799999999999999877 45678999999999999999998764211 0011
Q ss_pred EEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEE
Q 041079 191 FLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRII 268 (945)
Q Consensus 191 ~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~II 268 (945)
++.. ... .++..+.. +...+. ..-..+++-++|||+++.. ...+.|+..+......+.+|
T Consensus 93 eida----as~-~~Vd~iR~-l~~~~~------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fI 154 (824)
T PRK07764 93 EIDA----ASH-GGVDDARE-LRERAF------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFI 154 (824)
T ss_pred Eecc----ccc-CCHHHHHH-HHHHHH------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 1110 000 12222211 111110 0112345567889999765 34566666555445666777
Q ss_pred EEecCc-cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 269 ITTRNK-QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 269 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
++|.+. .+.... .....|++..++.++..+.+.+.+-..+.. . ..+....|++.++|.+.
T Consensus 155 l~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-i-d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 155 FATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-V-EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHcCCCHH
Confidence 666433 343322 234689999999999988887765332221 1 23456678888998774
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00012 Score=83.94 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=91.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
.-+.|+|.+|+|||+||+++++.+...++ .+.|+. ...+...+...+... ....+++.++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHhc
Confidence 45899999999999999999998776553 234442 123344444433221 234455555545
Q ss_pred CcEEEEecCCCh---HH-HHHHhcCCCC-CCCCCeEEEEec-Ccc--------ccccCCcceEEEcCCCCHHHHHHHHHH
Q 041079 237 KVLIVFDDVTCF---RQ-IKSLIRSPDW-FMADSRIIITTR-NKQ--------VLRNCSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 237 r~LlVLDdv~~~---~~-l~~l~~~~~~-~~~gs~IIiTTR-~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
.-+|++||++.. .. -+.+...+.. ...|..||+||. ... +...+...-++++++.+.++-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 668999999643 11 1222211110 123557888885 222 112223345789999999999999988
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 303 HAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 303 ~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.+-.....- -++....|++.+.|.--.|
T Consensus 275 ~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGEL--PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCCC--CHHHHHHHHhccccCHHHH
Confidence 874322211 1456677777777654433
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00018 Score=89.00 Aligned_cols=192 Identities=11% Similarity=0.129 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc------c
Q 041079 116 ELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF------E 187 (945)
Q Consensus 116 ~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~ 187 (945)
..+++...++..+..+. ..+.+|||+.++.++...|.. ..-+.++|.+|+||||+|+.+++++.... .
T Consensus 168 ~~l~~~~~~L~~~~r~~----~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 168 SALDQYTTDLTAQAREG----KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hhHHHHhhhHHHHhcCC----CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 35666665655554332 456899999999999988876 56677999999999999999999875432 1
Q ss_pred ceEEEEechhhhhc---cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---------HHHH-H
Q 041079 188 GSCFLENVREESQR---SGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---------QIKS-L 254 (945)
Q Consensus 188 ~~~~~~~~~~~s~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~l~~-l 254 (945)
..+|..+....... ......-.+.++..+ .+ .+++++|++|+++... +... |
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~-------------~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~L 308 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEV-------------KA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLL 308 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHHHHHHH-------------Hh--cCCCeEEEEeChHHhccCCCccccccHHHHh
Confidence 22332222211100 011111222222211 10 2468999999985431 1222 3
Q ss_pred hcCCCCCCCC-CeEEEEecCccccccC-------CcceEEEcCCCCHHHHHHHHHHhhhc--CCCCCccHHHHHHHHHHH
Q 041079 255 IRSPDWFMAD-SRIIITTRNKQVLRNC-------SVKEIYEMKELRDDHALELFSRHAFK--QNHPDVGYEELSSRVIQY 324 (945)
Q Consensus 255 ~~~~~~~~~g-s~IIiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~af~--~~~~~~~~~~l~~~i~~~ 324 (945)
.+.+ ..| -++|-||...+..+.. .-.+++.|++++.+++.+++....-. ..+.-.-..+....+++.
T Consensus 309 kp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 309 KPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 3332 233 4566555543221111 12358999999999999997543311 111111123455566666
Q ss_pred hcCCc
Q 041079 325 AQGVP 329 (945)
Q Consensus 325 ~~GlP 329 (945)
+.+..
T Consensus 386 s~ryi 390 (852)
T TIGR03345 386 SHRYI 390 (852)
T ss_pred ccccc
Confidence 65543
No 127
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.91 E-value=5.1e-05 Score=85.86 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
...++.|.+..++++.+.+.. .+-|.++|++|.|||++|++++++....|- .+.. .+....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-seL~~k 256 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SELIQK 256 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-chhhhh
Confidence 345678999999999887642 457889999999999999999998765542 1110 000000
Q ss_pred cC-CHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH----------------HHHHHhcCCCCC--C
Q 041079 202 SG-GLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR----------------QIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~-~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~ 262 (945)
.. ....... ..+.....+.+.+|+||+++... .+..++..++.+ .
T Consensus 257 ~~Ge~~~~vr----------------~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 257 YLGDGPKLVR----------------ELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hcchHHHHHH----------------HHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 00 0001111 11122224567899999974321 122233322221 2
Q ss_pred CCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhc
Q 041079 263 ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFK 306 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 306 (945)
.+.+||.||...+.+.. -..+..++++..+.++..++|..++.+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 35678888875443321 124568999999999999999987644
No 128
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.91 E-value=0.00023 Score=80.15 Aligned_cols=149 Identities=16% Similarity=0.194 Sum_probs=89.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
...++.|.+...++|.+.+.. .+-|.++|++|.|||+||+++++.....|- .+. ..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s----- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS----- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH-----
Confidence 446789999999988876531 567999999999999999999997654431 111 00
Q ss_pred cCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCCh-------------H---HHHHHhcCCCCC--C
Q 041079 202 SGGLACLRQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCF-------------R---QIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~--~ 262 (945)
.+ .....++. ... .+.+.......+.+|++|+++.. + .+..++..++.+ .
T Consensus 214 -----~l----~~k~~ge~--~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 -----EF----VQKYLGEG--PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -----HH----HHHhcchh--HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 01 00000000 000 11122223457889999997642 1 133333333322 2
Q ss_pred CCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 263 ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
.+..||+||...+.+.. ...+..++++..+.++..++|..+..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 35578888875543321 13466789999999999999987653
No 129
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=2.5e-05 Score=81.88 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=59.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC----------H
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD----------I 226 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----------~ 226 (945)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ..++.++++.+...+....-.... .
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 778999999999999999999997654 68999998765442 156777877773322211111111 1
Q ss_pred HHHHH-HHcCCCcEEEEecCCChH
Q 041079 227 DLNFR-RLSRMKVLIVFDDVTCFR 249 (945)
Q Consensus 227 ~~l~~-~L~~kr~LlVLDdv~~~~ 249 (945)
..... +-.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 11222 235899999999986543
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00021 Score=84.46 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=104.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc--ccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD--FEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+++||-+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+-.. .+...|.....+. .+.-.....
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHHHHH
Confidence 557899999999999998876 4568899999999999999999876331 1100111000000 000000000
Q ss_pred HHHH-------HhCCCC-ccCCHHHHHHHH-----cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEec-Ccc
Q 041079 212 LLSK-------LLKHEN-VILDIDLNFRRL-----SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTR-NKQ 275 (945)
Q Consensus 212 ll~~-------l~~~~~-~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR-~~~ 275 (945)
+... +..... ...++..+.+.+ .+.+-++|+|+++... ..+.|+..+....+.+.+|++|. ...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000 000000 000111111222 2445578999997653 45666655554445566665553 333
Q ss_pred cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 276 VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 276 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
+... ......+++.+++.++....+...+-..... -..+.+..+++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 3322 2235689999999999888887655332211 123567788899998554
No 131
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=2.2e-06 Score=87.59 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=39.8
Q ss_pred CCCCCEEeccCCCCCcc--CcccCCCCCCCEEECCCCCCcccc--hhhhCCCCCCEEeeccCCCCcccC
Q 041079 693 LHSLKSLCLHNCGVTRL--PESLGRLSLLEELDLRRNNFERVP--ESIIQLSKLNYLYLSYCQRLQSLP 757 (945)
Q Consensus 693 l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp 757 (945)
++++..+-+..|.+... -.....++.+..|+|+.|++.+.. ..+..++.|..|.+++++....+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 44555566666655532 223445566667777777776443 356667777888888777665554
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.4e-05 Score=59.07 Aligned_cols=39 Identities=36% Similarity=0.511 Sum_probs=21.7
Q ss_pred CCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccc
Q 041079 695 SLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVP 733 (945)
Q Consensus 695 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 733 (945)
+|++|++++|+++++|+.++++++|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666555444
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.87 E-value=0.0002 Score=81.85 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=90.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
..+.|+|.+|+|||+||+++++.+..+.+ .++|+. . ..+...+...+... ....+.+.+++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~- 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S----------EKFTNDFVNALRNN-----KMEEFKEKYRS- 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H----------HHHHHHHHHHHHcC-----CHHHHHHHHHh-
Confidence 46889999999999999999998876643 234442 1 22233344333221 23444555543
Q ss_pred CcEEEEecCCChH---H-HHHHhcCCCCC-CCCCeEEEEecCcc---------ccccCCcceEEEcCCCCHHHHHHHHHH
Q 041079 237 KVLIVFDDVTCFR---Q-IKSLIRSPDWF-MADSRIIITTRNKQ---------VLRNCSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 237 r~LlVLDdv~~~~---~-l~~l~~~~~~~-~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
.-+|||||++... . .+.+...+... ..|..+|+||.... +...+....++++++.+.++-.+++..
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488899996421 1 12222221110 23556888886421 222222335789999999999999998
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 303 HAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 303 ~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
.+-.....- .++....|++.+.|..-.
T Consensus 280 ~~~~~~~~l--~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 280 KAEEEGLEL--PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHcCCCC--CHHHHHHHHHhcCCCHHH
Confidence 874432211 245666777777766543
No 134
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.86 E-value=3.5e-07 Score=97.71 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=160.6
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--Ccc-CCcccceEeecC-CCCcc--cCccccCCcc
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EIS-SLSNIEKIILSG-TAIEE--LPSSVGCLSG 594 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~-~l~~L~~L~Ls~-~~i~~--lp~~i~~L~~ 594 (945)
..|+.|.+.++......+.-....++++++.|++.+|..+..-. ++. .+++|++|+|.. ..|+. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56889999999887776666677788888888999998665433 344 388999999988 34442 1112345788
Q ss_pred ccEEeccccccccc--cCcccCCCCCCCEEeccCCCCCCc--cCCccCCcccCccccccCCC-CccCC--ccccCCCCCc
Q 041079 595 LVLLHLQACKMLKS--LPCSLFKLKSLEDLNLCRCSNLRR--FPEEIGNVEASNSLYAYGTA-SSEVP--SSIVRSNNFR 667 (945)
Q Consensus 595 L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~l~~~~-~~~lp--~~l~~l~~L~ 667 (945)
|.+|+++.|..+.. +-.-..+++.|+.+.+.||...+. +-..-+.+..+.++++..+. +...- ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999875544 222234566677777777765431 11111222234444444443 22111 1123467889
Q ss_pred EEEcccCCCCccCccccccccccCCCCCCCEEeccCCC-CCc--cCcccCCCCCCCEEECCCCCCc---ccchhhhCCCC
Q 041079 668 FLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG-VTR--LPESLGRLSLLEELDLRRNNFE---RVPESIIQLSK 741 (945)
Q Consensus 668 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~--lp~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l~~ 741 (945)
.|+.++|.......... ...+..+|+.|-++.|+ +++ +-.--.+.+.|+.|++.++... ++-.--.+++.
T Consensus 298 ~l~~s~~t~~~d~~l~a----Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWA----LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHH----HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 99999888644433221 23456899999999986 332 2222356788999999988543 34444457899
Q ss_pred CCEEeeccCCCCccc--------CCcccccceEeeccCcccc
Q 041079 742 LNYLYLSYCQRLQSL--------PELPCNLILLYADHCTVLK 775 (945)
Q Consensus 742 L~~L~L~~c~~l~~l--------p~l~~~L~~L~~~~c~~L~ 775 (945)
|+.|.|++|...... ..-...|+.+.+++|+.+.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 999999999865433 1224567888889998754
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.00016 Score=83.72 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=93.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEG--SCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 235 (945)
...+.|+|.+|+|||+||+++++.+..+++. +.|+. ...+..++...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN-----TMEEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC-----cHHHHHHHHh-
Confidence 3568999999999999999999998776643 33432 122233333333211 2344555555
Q ss_pred CCcEEEEecCCCh---H-HHHHHhcCCCC-CCCCCeEEEEecCcc---------ccccCCcceEEEcCCCCHHHHHHHHH
Q 041079 236 MKVLIVFDDVTCF---R-QIKSLIRSPDW-FMADSRIIITTRNKQ---------VLRNCSVKEIYEMKELRDDHALELFS 301 (945)
Q Consensus 236 kr~LlVLDdv~~~---~-~l~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 301 (945)
+.-+|||||++.. + ..+.+...++. ...|..||+||.... +...+....++++++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3558899999542 1 12222221110 123556888886432 12233334579999999999999999
Q ss_pred HhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 302 RHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 302 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
..+-..... --++....|++.+.|..-.+
T Consensus 291 ~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 291 KKAEEEGID--LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHcCCC--CCHHHHHHHHcCcCCCHHHH
Confidence 887532211 12356777777777765543
No 136
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00027 Score=82.95 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=106.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc--c---------------------ceE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF--E---------------------GSC 190 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~---------------------~~~ 190 (945)
..+++||.+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+.... . .++
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 557899999999999999887 44578999999999999999998764211 0 011
Q ss_pred EEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEE
Q 041079 191 FLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRII 268 (945)
Q Consensus 191 ~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~II 268 (945)
.+. .... .++..+. ++...+. ..-..+++-++|+|+++.. ...+.|+..+....+...+|
T Consensus 91 eid----aas~-~gvd~iR-el~~~~~------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 91 ELD----AASH-GGVDDTR-ELRDRAF------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred Eec----cccc-cCHHHHH-HHHHHHH------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 110 0000 1222211 1111110 0001245668899998754 45667766665555666666
Q ss_pred EEecC-cccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 269 ITTRN-KQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 269 iTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
++|.+ ..+... ..-...+++..++.++..+.+.+.+-..+..- ..+....|++.++|.+-
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 65543 333322 12346899999999999888877664333211 13456778888888764
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00012 Score=87.20 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=107.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
..+++||.+..++.|...+.. ...+.++|..|+||||+|+.+++.+.......-+ ...+.-...+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~---------~~c~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG---------RPCGTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCCccCHHHHHHh
Confidence 557899999999999988876 4556899999999999999999876421110000 0000001111111
Q ss_pred HHHhCC----CC-ccCC---HHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-ccc
Q 041079 214 SKLLKH----EN-VILD---IDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK-QVL 277 (945)
Q Consensus 214 ~~l~~~----~~-~~~~---~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~ 277 (945)
...... .. .... ...+.+.+ .+++-++|+|+++.. +..+.|+..+....+...+|++|.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 000000 00 0000 11122221 245668999999754 45666666555444566777666443 232
Q ss_pred cc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 278 RN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 278 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.. ......++++.++.++....+...+...+..- ..+.+..+++.++|.+..+
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDA 218 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 21 12235788999999999988887764433211 1356778899999988644
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=0.00022 Score=88.54 Aligned_cols=165 Identities=14% Similarity=0.158 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc-----c-c
Q 041079 116 ELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD-----F-E 187 (945)
Q Consensus 116 ~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 187 (945)
..+++...++.++-... ..+.++||+.+++++...|.. ..-+.++|.+|+|||++|+.++.++... . .
T Consensus 160 ~~l~~~~~~l~~~a~~~----~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 160 PTLEEFGTNLTKEAIDG----NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred hHHHHHHHHHHHHHHcC----CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 35666666665553221 335689999999999999977 5567899999999999999999987432 1 2
Q ss_pred ceEEEEechhhhhcc---CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---------HHHHHh
Q 041079 188 GSCFLENVREESQRS---GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---------QIKSLI 255 (945)
Q Consensus 188 ~~~~~~~~~~~s~~~---~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~l~~l~ 255 (945)
..+|.-+........ .....-.+.+ +.+.-..++++|++|+++... ....++
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i----------------~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lL 299 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRI----------------FDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANIL 299 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHH----------------HHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence 334433322111000 0011111111 111123468999999984321 122233
Q ss_pred cCCCCCCCC-CeEEEEecCcccccc-------CCcceEEEcCCCCHHHHHHHHHH
Q 041079 256 RSPDWFMAD-SRIIITTRNKQVLRN-------CSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 256 ~~~~~~~~g-s~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
.+.. ..| -++|.+|........ ....+.++++..+.++..+++..
T Consensus 300 kp~l--~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 300 KPAL--ARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHH--hCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 2211 122 355555554432110 11235788999999999888865
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00045 Score=79.93 Aligned_cols=171 Identities=14% Similarity=0.130 Sum_probs=104.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~ 192 (945)
....++|-+..++.+.+.+.. .....++|+.|+||||+|+.++..+... +.....+
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 556789999999999999976 4556789999999999999999876321 1111111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCC
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADS 265 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 265 (945)
.. +.. .++.. ...+.+.. .+++-++|+|+++.. ...+.|+..+....+..
T Consensus 94 da----as~-~gvd~------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 94 DA----ASN-RGIDD------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred eC----ccC-CCHHH------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 10 000 11111 11222222 345669999999754 34566665555444556
Q ss_pred eEEEEecC-cccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 266 RIIITTRN-KQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 266 ~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
.+|++|.+ ..+... ......+++.+++.++..+.+...+-..+... ..+.+..+++.++|.+..+
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDA 217 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 66655533 223221 12235789999999999988887664322211 2355677888888876543
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.82 E-value=0.00018 Score=85.78 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=39.7
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+.++|++..++.+.+.+.. ...+.|+|++|+||||+|+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 556799999999988877764 6689999999999999999998755
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=1.2e-06 Score=99.41 Aligned_cols=174 Identities=22% Similarity=0.166 Sum_probs=110.3
Q ss_pred CccccCCccccEEeccccccccccCcccCCC-CCCCEEeccCCCC----------CCccCCccCCcccCccccccCCCCc
Q 041079 586 PSSVGCLSGLVLLHLQACKMLKSLPCSLFKL-KSLEDLNLCRCSN----------LRRFPEEIGNVEASNSLYAYGTASS 654 (945)
Q Consensus 586 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l-~~L~~L~Ls~~~~----------~~~lp~~l~~l~~L~~L~l~~~~~~ 654 (945)
|-+|..+.+|++|.|++|.. ...- .+..+ ..|++|...+ +. .+.+...+. -..|..-+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L-~~~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL-STAK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcch-hhhh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 55677788899999999873 3321 12111 2345554321 11 011111111 113455556667777
Q ss_pred cCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccch
Q 041079 655 EVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPE 734 (945)
Q Consensus 655 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 734 (945)
.+-.++.-++.|+.|+|++|+.... ..+..++.|++|||+.|.+..+|..-..--.|+.|+|++|.++++-
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR- 248 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-
Confidence 7777788888899999998885321 1355688899999999998887753222224899999999888776
Q ss_pred hhhCCCCCCEEeeccCCCCcccCCc-----ccccceEeeccCcc
Q 041079 735 SIIQLSKLNYLYLSYCQRLQSLPEL-----PCNLILLYADHCTV 773 (945)
Q Consensus 735 ~i~~l~~L~~L~L~~c~~l~~lp~l-----~~~L~~L~~~~c~~ 773 (945)
.+.+|.+|+.||+++|-... ..++ +.+|+.|++.|+|.
T Consensus 249 gie~LksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHHhhhhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCcc
Confidence 77888999999999875332 2222 35677888887654
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.8e-07 Score=104.25 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=64.6
Q ss_pred CcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccc
Q 041079 569 LSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYA 648 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 648 (945)
.-.|.+.+.++|.+..+..++.-++.|+.|||++|+ ..... .+..|+.|++|||++|. +..+|..-..--.|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhhheeeee
Confidence 456777788888888888888888888888888887 34443 46678888888888865 3444432111112666666
Q ss_pred cCCCCccCCccccCCCCCcEEEcccC
Q 041079 649 YGTASSEVPSSIVRSNNFRFLSFRES 674 (945)
Q Consensus 649 ~~~~~~~lp~~l~~l~~L~~L~l~~~ 674 (945)
.+|.+.++ ..+.+|.+|+.||++.|
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHh
Confidence 66665554 23444444444444444
No 143
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.81 E-value=4.1e-06 Score=75.53 Aligned_cols=58 Identities=33% Similarity=0.568 Sum_probs=47.9
Q ss_pred CCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCCcc
Q 041079 2 NRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPSDL 65 (945)
Q Consensus 2 ~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~v 65 (945)
..|+.+..++.+||++|+..|+++|++|..|.||..|+..+. +.+..|+||. +++.++
T Consensus 34 ~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~----~~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 34 PPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW----KRGKPIIPVR--LDPCEL 91 (102)
T ss_dssp -TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH----CTSESEEEEE--CSGGGS
T ss_pred CCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH----HCCCEEEEEE--ECCcCC
Confidence 578999999999999999999999999999999999988883 3455799998 444433
No 144
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00044 Score=79.96 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc-ccc--------------------ceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS-DFE--------------------GSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~--------------------~~~~~ 192 (945)
..+++||-+...+.+...+.. ..+..++|..|+||||+|+.+++.+-. ... ....+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 567899999999999998877 456689999999999999999987521 110 01111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
. .+.. .++..+...+ ...... -..+++-++|+|+++.. +..++|+..+....+.+++|++
T Consensus 92 d----aas~-~gId~IReli-e~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 92 D----AASN-RGIDDIRELI-EQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred c----cccc-cCHHHHHHHH-HHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 0 0001 1222222221 111000 01145668899999764 3466666655554567787877
Q ss_pred ecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 271 TRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 271 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
|.+.. +... ......+++.+++.++..+.+...+-..+..- ..+.+..|++.++|.+.-+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 76642 2111 12236899999999999998877664333221 2456778899999987443
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00016 Score=77.93 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=71.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccc--cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHc-CC
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDF--EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLS-RM 236 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~-~k 236 (945)
.+.++|.+|.||||+|+.++..+...- ....|+... .. .++..+.+.. ...+.+.+. -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~----~l~~~~~g~~-----~~~~~~~~~~a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RD----DLVGQYIGHT-----APKTKEILKRAM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HH----HHhHhhcccc-----hHHHHHHHHHcc
Confidence 588999999999999999988654321 111233211 11 1122221111 111122221 13
Q ss_pred CcEEEEecCCCh-----------HHHHHHhcCCCCCCCCCeEEEEecCccccccC--------CcceEEEcCCCCHHHHH
Q 041079 237 KVLIVFDDVTCF-----------RQIKSLIRSPDWFMADSRIIITTRNKQVLRNC--------SVKEIYEMKELRDDHAL 297 (945)
Q Consensus 237 r~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 297 (945)
.-+|+||+++.. +.++.|.........+.+||+++.....-... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999632 23445555544444556777766533211110 12357899999999999
Q ss_pred HHHHHhhh
Q 041079 298 ELFSRHAF 305 (945)
Q Consensus 298 ~Lf~~~af 305 (945)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99988763
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.79 E-value=0.0005 Score=85.31 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc------c
Q 041079 116 ELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF------E 187 (945)
Q Consensus 116 ~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~ 187 (945)
..+++...++..+..+. ..+.++||+.+++++...|.. ...+.++|.+|+||||||+.++.++.... .
T Consensus 159 ~~l~~~~~~l~~~~r~~----~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 159 QALKKYTIDLTERAEQG----KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred hHHHHHhhhHHHHHhcC----CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 35555555555554432 346799999999999998877 55777999999999999999999875421 2
Q ss_pred ceEEEEechhhhhc---cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---------HHHHHh
Q 041079 188 GSCFLENVREESQR---SGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---------QIKSLI 255 (945)
Q Consensus 188 ~~~~~~~~~~~s~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~l~~l~ 255 (945)
..+|..+....... ......-.+.++..+ . -.+++++|++|+++... +...++
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~-------------~--~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l 299 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDL-------------A--KQEGNVILFIDELHTMVGAGKADGAMDAGNML 299 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHH-------------H--HcCCCeEEEEecHHHhccCCCCccchhHHHHh
Confidence 33333222221100 011111122222111 0 12478999999986542 123333
Q ss_pred cCCCCCCCC-CeEEEEecCcccccc-------CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 256 RSPDWFMAD-SRIIITTRNKQVLRN-------CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 256 ~~~~~~~~g-s~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.+.- ..| -++|-+|...+.... ....+.+.+...+.++..+++....
T Consensus 300 kp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 300 KPAL--ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 2222 233 355555544332110 0122356677779999999886544
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00023 Score=84.50 Aligned_cols=174 Identities=13% Similarity=0.198 Sum_probs=104.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccc------------------eEEEEec
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEG------------------SCFLENV 195 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~------------------~~~~~~~ 195 (945)
...+++|.+..++.+...+.. .+.+.++|+.|+||||+|+.++..+-..-.. ++.+.
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid-- 93 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD-- 93 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe--
Confidence 556789999999999998877 5567899999999999999999865321100 00010
Q ss_pred hhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEec-
Q 041079 196 REESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTR- 272 (945)
Q Consensus 196 ~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR- 272 (945)
..+ . .+...+ +++...+.. .-..+++-++|+|+++.. ..+.+|+..+....+...+|++|.
T Consensus 94 -aas-n-~~vd~I-ReLie~~~~------------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte 157 (725)
T PRK07133 94 -AAS-N-NGVDEI-RELIENVKN------------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157 (725)
T ss_pred -ccc-c-CCHHHH-HHHHHHHHh------------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCC
Confidence 000 0 111111 111111110 012356668899998754 456677766554445556555554
Q ss_pred Ccccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 273 NKQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 273 ~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
...+... ....+.+++.+++.++..+.+...+-..+... ..+.+..+++.++|-+.
T Consensus 158 ~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR 214 (725)
T PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLR 214 (725)
T ss_pred hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 3334322 22346899999999999988887653322111 13457788889988664
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.74 E-value=0.00012 Score=75.50 Aligned_cols=129 Identities=10% Similarity=0.052 Sum_probs=74.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV 238 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 238 (945)
+.+.|||++|+|||+||+++++.... .++.. . .. .. +.. ...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~-~~----~~--------------------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------I-FF----NE--------------------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------h-hh----ch--------------------hHH-hcCC
Confidence 56899999999999999998775421 22210 0 00 00 011 1235
Q ss_pred EEEEecCCChHH--HHHHhcCCCCCCCCCeEEEEecCccc-------cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCC
Q 041079 239 LIVFDDVTCFRQ--IKSLIRSPDWFMADSRIIITTRNKQV-------LRNCSVKEIYEMKELRDDHALELFSRHAFKQNH 309 (945)
Q Consensus 239 LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 309 (945)
++++||++...+ +-.+..... ..|..||+|++...- ...+...-++++++++.++-.+++.+.+....-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 788999975433 222222221 256789999985532 111223347999999999988888776642211
Q ss_pred CCccHHHHHHHHHHHhcCC
Q 041079 310 PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 310 ~~~~~~~l~~~i~~~~~Gl 328 (945)
. --++...-+++++.|-
T Consensus 166 ~--l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 166 T--ISRQIIDFLLVNLPRE 182 (214)
T ss_pred C--CCHHHHHHHHHHccCC
Confidence 1 1134555666666554
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00071 Score=80.55 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=105.1
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
....++|.+..++.|..++.. ...+.++|..|+||||+|+.+++.+-... +.... ...+.-...+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~---------~~Cg~C~~C~~i 84 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP---------EPCGKCELCRAI 84 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC---------CCCcccHHHHHH
Confidence 557799999999999998887 46778999999999999999999764321 10000 000000000111
Q ss_pred HHHHhC-----CCCccCCHHHHH---HHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-cc
Q 041079 213 LSKLLK-----HENVILDIDLNF---RRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK-QV 276 (945)
Q Consensus 213 l~~l~~-----~~~~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v 276 (945)
...... ........+.++ +.+ .+++-++|+|+++.. +....|+..+........+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 000000 000000011111 111 245568899999864 45666666555433455555555443 33
Q ss_pred ccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 277 LRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 277 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
... ......+++..++.++....+.+.+-+.+..- ..+.+..+++.++|.+..+
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 322 12345788999999998888877664322111 1345778889999877543
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00052 Score=78.59 Aligned_cols=150 Identities=11% Similarity=0.118 Sum_probs=85.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV 238 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 238 (945)
.-+.|+|..|+|||+||+++++.+......+.|+. ...+...+...+... ....++..++ ..-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYR-NVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHcc-cCC
Confidence 46889999999999999999998765544455553 122333444333221 1333444443 445
Q ss_pred EEEEecCCChH----HHHHHhcCCCC-CCCCCeEEEEecCc---------cccccCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 239 LIVFDDVTCFR----QIKSLIRSPDW-FMADSRIIITTRNK---------QVLRNCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 239 LlVLDdv~~~~----~l~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+|++||+.... ..+.+...++. ...|..||+||... .+...+...-++++.+++.++-.+++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 88889985431 12222221110 02456788888542 122223334688999999999999998877
Q ss_pred hcCCCCCccHHHHHHHHHHHhcC
Q 041079 305 FKQNHPDVGYEELSSRVIQYAQG 327 (945)
Q Consensus 305 f~~~~~~~~~~~l~~~i~~~~~G 327 (945)
-.....- -++...-++..+.|
T Consensus 285 ~~~~~~l--~~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALSIRI--EETALDFLIEALSS 305 (445)
T ss_pred HHcCCCC--CHHHHHHHHHhcCC
Confidence 4322111 13444445555544
No 151
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.0014 Score=72.14 Aligned_cols=177 Identities=16% Similarity=0.228 Sum_probs=108.3
Q ss_pred HHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccccc--eEEE
Q 041079 121 VLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFEG--SCFL 192 (945)
Q Consensus 121 i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~ 192 (945)
+-....+.+..+. ....++||+.++..+.+++.. .+.+-|.|-+|.|||.+...++.+....... ++++
T Consensus 135 ~~~~~~~~l~~t~---~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227|consen 135 ISEQRSESLLNTA---PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred HHHHHHHHHHhcC---CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE
Confidence 3334444444443 347899999999999999876 7889999999999999999999877655543 3555
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCC----HHHHHHHHcCC--CcEEEEecCCChHH--HHHHhcCCCCC-CC
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILD----IDLNFRRLSRM--KVLIVFDDVTCFRQ--IKSLIRSPDWF-MA 263 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----~~~l~~~L~~k--r~LlVLDdv~~~~~--l~~l~~~~~~~-~~ 263 (945)
.+.. . .....+...|...+......... ...+.....+. .+|+|+|.+|.... -..+...+.|. -+
T Consensus 212 nc~s-l----~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp 286 (529)
T KOG2227|consen 212 NCTS-L----TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP 286 (529)
T ss_pred eecc-c----cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC
Confidence 4321 1 23345555665555332222111 45555555443 58999999876542 11122222222 36
Q ss_pred CCeEEEEecCc------cccccC-----CcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 264 DSRIIITTRNK------QVLRNC-----SVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 264 gs~IIiTTR~~------~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
++|+|+.---. ..+... -..+.+..++-+.++-.++|..+.-
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 77766532211 111111 1235778899999999999998773
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.0011 Score=68.02 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
..+.++|.+.+.+.|.+-... ...|.+||..|.|||++++++.+++..+==..+-+. . .....+..+..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~---k--~~L~~l~~l~~ 99 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS---K--EDLGDLPELLD 99 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC---H--HHhccHHHHHH
Confidence 557899999999888664433 667889999999999999999998765432222221 1 01022222222
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCC---C---hHHHHHHhcC-CCCCCCCCeEEEEecCcccccc
Q 041079 211 ELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVT---C---FRQIKSLIRS-PDWFMADSRIIITTRNKQVLRN 279 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~---~---~~~l~~l~~~-~~~~~~gs~IIiTTR~~~v~~~ 279 (945)
.+ . -+..|++|.+||+. + ...+..++.. +.....+..|..||-.+++.+.
T Consensus 100 ~l----~---------------~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 100 LL----R---------------DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HH----h---------------cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 21 1 13579999999982 2 2235555532 2222234455567766666543
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.00062 Score=84.87 Aligned_cols=165 Identities=10% Similarity=0.127 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc------cc
Q 041079 117 LIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF------EG 188 (945)
Q Consensus 117 ~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~~ 188 (945)
.+++...++..+..+. ..+.+|||+.+++++...|.. ...+.++|.+|+|||++|+.++.++...+ ..
T Consensus 155 ~l~~~~~~l~~~~~~~----~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 155 ALEKYARDLTERAREG----KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HHHHHhhhHHHHhhCC----CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 4555544544443322 345799999999999998876 56677999999999999999999875432 23
Q ss_pred eEEEEechhhhhc---cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH--cCCCcEEEEecCCChH---------HHHHH
Q 041079 189 SCFLENVREESQR---SGGLACLRQELLSKLLKHENVILDIDLNFRRL--SRMKVLIVFDDVTCFR---------QIKSL 254 (945)
Q Consensus 189 ~~~~~~~~~~s~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~---------~l~~l 254 (945)
.+|..++...... ......- ...+.+.+ .+++.+|++|+++... +...+
T Consensus 231 ~~~~l~~~~l~a~~~~~g~~e~~-----------------l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~ 293 (852)
T TIGR03346 231 RLLALDMGALIAGAKYRGEFEER-----------------LKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNM 293 (852)
T ss_pred eEEEeeHHHHhhcchhhhhHHHH-----------------HHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHH
Confidence 3333222111000 0001111 11122222 2468999999986432 12233
Q ss_pred hcCCCCCCCC-CeEEEEecCcccccc-------CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 255 IRSPDWFMAD-SRIIITTRNKQVLRN-------CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 255 ~~~~~~~~~g-s~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+.+.. ..| -++|-+|........ ....+.+.++..+.++..+++....
T Consensus 294 Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 294 LKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 32222 233 345544443322110 0122467899999999999987653
No 154
>PRK12377 putative replication protein; Provisional
Probab=97.69 E-value=0.00063 Score=71.29 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=45.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...+.++|.+|+|||+||.++++.+..+...+.|+. ...+...+-...... .....+.+.+ .+-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~----~~~~~~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG----QSGEKFLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc----chHHHHHHHh-cCC
Confidence 467899999999999999999998876655566654 122333332222111 1122233333 356
Q ss_pred cEEEEecC
Q 041079 238 VLIVFDDV 245 (945)
Q Consensus 238 ~LlVLDdv 245 (945)
=||||||+
T Consensus 165 dLLiIDDl 172 (248)
T PRK12377 165 DLLVLDEI 172 (248)
T ss_pred CEEEEcCC
Confidence 79999999
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00073 Score=79.48 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=108.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc-----ccc-eEEEEechhhhhc------
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD-----FEG-SCFLENVREESQR------ 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~s~~------ 201 (945)
..++++|-+..++.+...+.. .+.+.++|+.|+||||+|+.+++.+-.. +++ .|. ..+.....
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~--~C~~i~~~~~~dv~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS--SCKSIDNDNSLDVI 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch--HHHHHHcCCCCCeE
Confidence 557899999999999999877 5567899999999999999999876321 110 000 00000000
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecC
Q 041079 202 ------SGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRN 273 (945)
Q Consensus 202 ------~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~ 273 (945)
..++..+. ++...+. ..-..+++-++|+|+++.. ..++.|+..+....+...+|++|.+
T Consensus 92 ~idgas~~~vddIr-~l~e~~~------------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 92 EIDGASNTSVQDVR-QIKEEIM------------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred EecCcccCCHHHHH-HHHHHHH------------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 01111111 1111100 0012356668999999765 3467777666654566677766644
Q ss_pred c-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 274 K-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 274 ~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
. .+... ......++..+++.++..+.+...+...+..- ..+.+..|++.++|.+..+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3 23221 12245789999999999888887764433221 2456777888899877533
No 156
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.69 E-value=0.00011 Score=80.90 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=62.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC----------H
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD----------I 226 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----------~ 226 (945)
.+.++|+|.+|.|||||++.+++.+..+ |+..+|+..+++. ..++.++++.++..+....-.... .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 7889999999999999999999987665 9999998876442 256778888885544332221111 1
Q ss_pred HHHHH-HHcCCCcEEEEecCCChHH
Q 041079 227 DLNFR-RLSRMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 227 ~~l~~-~L~~kr~LlVLDdv~~~~~ 250 (945)
+..+. +-++++++|++|.+.....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHH
Confidence 11111 2368999999999966543
No 157
>CHL00181 cbbX CbbX; Provisional
Probab=97.67 E-value=0.00086 Score=72.35 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=72.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc-c-cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHc-CC
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD-F-EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLS-RM 236 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~-~k 236 (945)
.+.++|.+|.||||+|+.+++..... + ...-|+.. .... +.....+.. .......+. ..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v---------~~~~----l~~~~~g~~-----~~~~~~~l~~a~ 122 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV---------TRDD----LVGQYIGHT-----APKTKEVLKKAM 122 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe---------cHHH----HHHHHhccc-----hHHHHHHHHHcc
Confidence 47899999999999999998865321 1 11113221 1111 222221111 011111121 12
Q ss_pred CcEEEEecCCCh-----------HHHHHHhcCCCCCCCCCeEEEEecCcccccc--------CCcceEEEcCCCCHHHHH
Q 041079 237 KVLIVFDDVTCF-----------RQIKSLIRSPDWFMADSRIIITTRNKQVLRN--------CSVKEIYEMKELRDDHAL 297 (945)
Q Consensus 237 r~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~ 297 (945)
.-+|++|+++.. +..+.|.........+.+||+++....+... -.....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 358999999642 3455555554444455677777753322110 013458999999999999
Q ss_pred HHHHHhhhc
Q 041079 298 ELFSRHAFK 306 (945)
Q Consensus 298 ~Lf~~~af~ 306 (945)
+++...+-+
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887743
No 158
>CHL00176 ftsH cell division protein; Validated
Probab=97.67 E-value=0.00069 Score=80.70 Aligned_cols=168 Identities=14% Similarity=0.189 Sum_probs=96.1
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+...+++.+.+.. .+-|.++|++|.|||++|++++......| +. +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-i------- 247 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-I------- 247 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-c-------
Confidence 346788988877777665422 34689999999999999999998753322 21 0
Q ss_pred CCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChH----------------HHHHHhcCCCCC--CC
Q 041079 203 GGLACLRQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFR----------------QIKSLIRSPDWF--MA 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~ 263 (945)
....+..... +. .... ...+.......+.+|++|+++... .+..++...+.+ ..
T Consensus 248 -s~s~f~~~~~----g~--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 248 -SGSEFVEMFV----GV--GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -cHHHHHHHhh----hh--hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 0001111000 00 0000 222333445678999999996431 144454443322 23
Q ss_pred CCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcC
Q 041079 264 DSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQG 327 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 327 (945)
+-.||.||...+.+. .-..+..+.++..+.++-.+++..++-..... .......+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 456666776543222 11245688999999999999998887432111 12234456666665
No 159
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00067 Score=80.75 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=105.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc-----------------------ccceE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD-----------------------FEGSC 190 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~~~~ 190 (945)
..++++|.+..++.|...+.. .+.+.++|+.|+||||+|+.++..+-.. |+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 557899999999999999877 5568899999999999999999876311 111 1
Q ss_pred EEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEE
Q 041079 191 FLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRII 268 (945)
Q Consensus 191 ~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~II 268 (945)
.+. . ... .++..+. .++.++... -..+++-++|+|+++.. ...+.|+..+.....++.+|
T Consensus 94 ~ld-~---~~~-~~vd~Ir-~li~~~~~~------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELD-A---ASN-NSVDDIR-NLIEQVRIP------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred Eec-c---ccc-CCHHHHH-HHHHHHhhC------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 111 0 000 1122222 111111100 01234558899998765 34666665555444566766
Q ss_pred EEe-cCcccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 269 ITT-RNKQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 269 iTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
++| +...+... .....++++++++.++....+...+-..+... ..+.+..|++.++|..-
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMR 217 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 555 44444432 22346899999999999988887664433221 13456788888888664
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00053 Score=79.89 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
..+.|+|..|.|||.|+.++++.....+. .+.|+. ...+..++...+... ....++++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhc-
Confidence 45899999999999999999998765442 234442 223333443333221 13344555543
Q ss_pred CcEEEEecCCCh---HHH-HHHhcCCCC-CCCCCeEEEEecCc---------cccccCCcceEEEcCCCCHHHHHHHHHH
Q 041079 237 KVLIVFDDVTCF---RQI-KSLIRSPDW-FMADSRIIITTRNK---------QVLRNCSVKEIYEMKELRDDHALELFSR 302 (945)
Q Consensus 237 r~LlVLDdv~~~---~~l-~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 302 (945)
-=+|||||++.. +.+ +.++..++. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 357888999543 111 222222111 12466788988753 1222333455899999999999999998
Q ss_pred hhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 303 HAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 303 ~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
++-.....-+ ++++.-|++.+.+.
T Consensus 458 ka~~r~l~l~--~eVi~yLa~r~~rn 481 (617)
T PRK14086 458 KAVQEQLNAP--PEVLEFIASRISRN 481 (617)
T ss_pred HHHhcCCCCC--HHHHHHHHHhccCC
Confidence 8743322111 34555555555544
No 161
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.0013 Score=68.50 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=111.1
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc--cccceEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS--DFEGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
..++++|-+..++.|.+.+.. ..+...+|++|.|||+-|+++++.+-. -|++++-=.|. |.. .|..-....+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---Sde-rGisvvr~Ki 109 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDE-RGISVVREKI 109 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---ccc-ccccchhhhh
Confidence 567899999999999888876 778899999999999999999987633 35554432222 111 2222111110
Q ss_pred HHHHhCCCCccCCHHHHHHHH---c---CCC-cEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcccccc--CC
Q 041079 213 LSKLLKHENVILDIDLNFRRL---S---RMK-VLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQVLRN--CS 281 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L---~---~kr-~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~--~~ 281 (945)
.+.+.+.... . .++ -.+|||+++.. +.|.+|......+...+|.|+.+..-..... ..
T Consensus 110 -----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 -----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0011111111 0 122 47889999875 4588888777766677777665544322111 11
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 282 VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
-.+-|..++|.+++..+-+...|-+.+.+-+ .+..+.|+++++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCc
Confidence 2246889999999999998888865443322 35678889998884
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=5.7e-05 Score=55.86 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=34.2
Q ss_pred CCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC
Q 041079 717 SLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 717 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
++|++|+|++|+|+.+|..+.+|++|+.|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57999999999999999889999999999999997 445544
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0015 Score=71.29 Aligned_cols=185 Identities=15% Similarity=0.184 Sum_probs=108.3
Q ss_pred CCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc---------------cccceEEEEechhhhh
Q 041079 139 NQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS---------------DFEGSCFLENVREESQ 200 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~s~ 200 (945)
++++|.+...+.+.+.+.. .....++|..|+||+++|.++++.+-. .++...|+........
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 5689999999999999877 578999999999999999999986522 2334455432100000
Q ss_pred ccCCHHHHHHHHHHHHhCCCCc--cC---CHHHHHHHH-----cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEE
Q 041079 201 RSGGLACLRQELLSKLLKHENV--IL---DIDLNFRRL-----SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRII 268 (945)
Q Consensus 201 ~~~~l~~l~~~ll~~l~~~~~~--~~---~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~II 268 (945)
.. .-...+...+..... .- ....+.+.+ .+++-++|+|+++... ...+|+..+.... .+.+|
T Consensus 84 --~~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 84 --KL---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred --cc---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00 000001111100110 11 123333333 3456788999987653 4555555544333 44555
Q ss_pred EEec-CccccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 269 ITTR-NKQVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 269 iTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
++|. ...++... .-.+.+++.+++.++..+.+....... .. ......++..++|.|..+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~--~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---IL--NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cc--hhHHHHHHHHcCCCHHHHHH
Confidence 5554 33444332 234689999999999999998764211 11 11135788999999965543
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.00038 Score=65.70 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0019 Score=76.31 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=103.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc---------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF---------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~ 192 (945)
..++++|.+..++.+.+.+.. .+...++|+.|+||||+|+.+++.+-..- ..++.+
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei 93 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI 93 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence 567899999999999999876 56677899999999999999998653210 001111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHH-----HcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCC
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRR-----LSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADS 265 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 265 (945)
.. ... .++.. ...+.+. ..+++-++|+|+++.. .....|+..+....+..
T Consensus 94 da----as~-~~vd~------------------ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 94 DA----ASN-NGVDE------------------IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV 150 (559)
T ss_pred ec----ccc-CCHHH------------------HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence 10 000 11111 1122222 1345668899999754 45666766554434455
Q ss_pred eEEEEecCc-ccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 266 RIIITTRNK-QVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 266 ~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
.+|++|... .+... ......++..+++.++..+.+...+-+.+..-+ .+.+..+++.++|.+.
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R 215 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMR 215 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 556555433 33222 123457889999999998888877643332211 3556778888888764
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.60 E-value=0.0017 Score=67.87 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=46.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV 238 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 238 (945)
..+.++|.+|+|||+||.++++.+...-..++++. +..+...+-.... . .......+.+.+. +.=
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~-~--~~~~~~~~l~~l~-~~d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFS-N--SETSEEQLLNDLS-NVD 164 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHh-h--ccccHHHHHHHhc-cCC
Confidence 57899999999999999999998766555555553 2233333322221 1 1112334445555 455
Q ss_pred EEEEecCCC
Q 041079 239 LIVFDDVTC 247 (945)
Q Consensus 239 LlVLDdv~~ 247 (945)
+|||||+..
T Consensus 165 lLvIDDig~ 173 (244)
T PRK07952 165 LLVIDEIGV 173 (244)
T ss_pred EEEEeCCCC
Confidence 888999844
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00071 Score=69.67 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=123.7
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
...+|||.+...+++.-.+.. .-.|.++|++|.||||||.-+++++...+... .....++..++..++
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDlaaiL 98 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLAAIL 98 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHHHHH
Confidence 557899999999988877765 66899999999999999999999886554321 111111112222111
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-HHHHHh-cCCCC--------CCCCCeEE-----------
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-QIKSLI-RSPDW--------FMADSRII----------- 268 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-~l~~l~-~~~~~--------~~~gs~II----------- 268 (945)
..|+. .=.+.+|.+.... ..++++ +.... .++++|.|
T Consensus 99 ---------------------t~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 ---------------------TNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ---------------------hcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 12222 3345567765432 122222 11111 13444432
Q ss_pred EEecCccccccC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHH
Q 041079 269 ITTRNKQVLRNC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEV 346 (945)
Q Consensus 269 iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~ 346 (945)
-|||.-.+..-. ...-+.+++--+.+|-.++..+.|..-+. +-.++-+.+|+++..|-|--..-+-+..+.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD----- 229 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVRD----- 229 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHHH-----
Confidence 588855432211 12236788888999999999988732221 122456889999999999533222222111
Q ss_pred HHHHHHH--HHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCCC--ChHHHHHH
Q 041079 347 WESAINK--LKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKGE--DVYPVMKF 399 (945)
Q Consensus 347 w~~~l~~--l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~ 399 (945)
+..+... +...........|.+-=.+|+...+..+..+.-.+.|- .++.+...
T Consensus 230 fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~ 286 (332)
T COG2255 230 FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAA 286 (332)
T ss_pred HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 1000000 00000112333455545567777777766666555333 34444433
No 168
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.001 Score=70.68 Aligned_cols=165 Identities=20% Similarity=0.348 Sum_probs=103.2
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
...+=|.+..+++|.+...- .+-|.++|++|.|||-||++|+++....| +..+..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS----- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS----- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH-----
Confidence 34566789999999887643 67799999999999999999999876544 332211
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHH----cCCCcEEEEecCCCh-------------H-H--HHHHhcCCCCCC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRL----SRMKVLIVFDDVTCF-------------R-Q--IKSLIRSPDWFM 262 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~-------------~-~--l~~l~~~~~~~~ 262 (945)
++.....++. ...+++.+ .+.+.+|.+|.+|.. + | +-+|+..++.|.
T Consensus 220 --------ElVqKYiGEG-----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 --------ELVQKYIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred --------HHHHHHhccc-----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1222222221 22223222 357899999998531 1 1 344555666554
Q ss_pred C--CCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCc
Q 041079 263 A--DSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 263 ~--gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 329 (945)
+ .-|||..|...+++. --..+..++++.-+.+.-.++|.-|+-+-.. .+-+++. +++.+.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~s 357 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFS 357 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCc
Confidence 4 458888776555433 2235678999988888888889888754332 3344443 445555543
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00085 Score=79.62 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=101.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc-c--------------------cceEEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD-F--------------------EGSCFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F--------------------~~~~~~ 192 (945)
..+++||.+..++.|.+.+.. ...+.++|..|+||||+|+.+++.+-.. . ...+.+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 567899999999999998876 4567899999999999999999875321 1 001111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
.. ... .++..+ +++...+... -..+++-++|+|+++.. .....|+..+....+...+|++
T Consensus 94 d~----~s~-~~v~~i-r~l~~~~~~~------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~ 155 (576)
T PRK14965 94 DG----ASN-TGVDDI-RELRENVKYL------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155 (576)
T ss_pred ec----cCc-cCHHHH-HHHHHHHHhc------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEE
Confidence 10 000 111111 1121111000 01234557889999764 3455666555444456677665
Q ss_pred ecC-cccccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 271 TRN-KQVLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 271 TR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
|.+ ..+... ......+++++++.++..+.+...+-..+..- ..+....+++.++|..
T Consensus 156 t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~l 214 (576)
T PRK14965 156 TTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSM 214 (576)
T ss_pred eCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCH
Confidence 543 333322 12235788999999998888776553322111 1345677888888865
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00044 Score=73.82 Aligned_cols=102 Identities=22% Similarity=0.220 Sum_probs=58.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV 238 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 238 (945)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC-
Confidence 45889999999999999999998876644445543 222333333332211 1112334555565444
Q ss_pred EEEEecCCC--hH--HHHHHhcCCCC-CCCCCeEEEEecCc
Q 041079 239 LIVFDDVTC--FR--QIKSLIRSPDW-FMADSRIIITTRNK 274 (945)
Q Consensus 239 LlVLDdv~~--~~--~l~~l~~~~~~-~~~gs~IIiTTR~~ 274 (945)
||||||+.. .. ..+.+...++. ...|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999932 11 12222222111 13566799999643
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00083 Score=81.50 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc-----c-cc
Q 041079 117 LIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD-----F-EG 188 (945)
Q Consensus 117 ~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~ 188 (945)
.+++...++...-... ..+.++||+.+++++.+.|.. ..-+.++|.+|+|||++|+.++.++... + +.
T Consensus 168 ~l~~~~~~l~~~a~~g----~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~ 243 (758)
T PRK11034 168 RMENFTTNLNQLARVG----GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243 (758)
T ss_pred HHHHHHHhHHHHHHcC----CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCC
Confidence 5555555555443322 335689999999999998877 5566789999999999999999875332 1 22
Q ss_pred eEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccC---CHHHHHHHH-cCCCcEEEEecCCCh----------HHHHHH
Q 041079 189 SCFLENVREESQRSGGLACLRQELLSKLLKHENVIL---DIDLNFRRL-SRMKVLIVFDDVTCF----------RQIKSL 254 (945)
Q Consensus 189 ~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~---~~~~l~~~L-~~kr~LlVLDdv~~~----------~~l~~l 254 (945)
.+|..+ +..+ + .+...... ....+.+.+ +.++.+|++|+++.. .+...+
T Consensus 244 ~~~~l~----------~~~l----l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nl 306 (758)
T PRK11034 244 TIYSLD----------IGSL----L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANL 306 (758)
T ss_pred eEEecc----------HHHH----h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHH
Confidence 333211 1111 0 00000000 012222223 346789999998632 122222
Q ss_pred hcCCCCCCCC-CeEEEEecCcccccc-------CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 255 IRSPDWFMAD-SRIIITTRNKQVLRN-------CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 255 ~~~~~~~~~g-s~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+.+.. ..| -++|-+|...+.... ..-.+.++|+.++.+++.+++....
T Consensus 307 Lkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 307 IKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHH--hCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32221 123 344544443322110 0122579999999999999998654
No 172
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.00064 Score=72.15 Aligned_cols=106 Identities=22% Similarity=0.179 Sum_probs=59.9
Q ss_pred HhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHH
Q 041079 152 QSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFR 231 (945)
Q Consensus 152 ~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~ 231 (945)
.+++....-+.++|.+|+|||.||.++++....+.-.+.|+. ...+...+..... ........+
T Consensus 100 ~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~-----~~~~~~~l~ 163 (269)
T PRK08181 100 DSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR-----ELQLESAIA 163 (269)
T ss_pred HHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh-----CCcHHHHHH
Confidence 345555777999999999999999999998765544555653 2233443322211 112223333
Q ss_pred HHcCCCcEEEEecCCCh----HHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 232 RLSRMKVLIVFDDVTCF----RQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 232 ~L~~kr~LlVLDdv~~~----~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
.+. +.=||||||+... ...+.+...++....+..+||||...
T Consensus 164 ~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 164 KLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 333 4459999999432 22222222221111224688888754
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.00097 Score=78.26 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=93.4
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+...+++.+.+.. .+-+.++|++|.|||++|++++......| +. +
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i------- 119 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I------- 119 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c-------
Confidence 446788888777666654431 45688999999999999999998753332 11 0
Q ss_pred CCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChH----------------HHHHHhcCCCCC--CC
Q 041079 203 GGLACLRQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFR----------------QIKSLIRSPDWF--MA 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~ 263 (945)
....+.... .+. .... ...+.......+.+|+||+++... .+..++...+.+ ..
T Consensus 120 -~~~~~~~~~----~g~--~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 120 -SGSDFVEMF----VGV--GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred -cHHHHHHHH----hcc--cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 001111100 000 0000 122223334567899999985421 133344333322 23
Q ss_pred CCeEEEEecCccc-----cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 264 DSRIIITTRNKQV-----LRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 264 gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
+-.||.||..... ......+..++++..+.++-.++|..+.-+.... .+ .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCC
Confidence 3455666654432 1112356789999999999999998876432221 11 1234666666664
No 174
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0016 Score=71.41 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=90.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
...+.++|+.|+||||+|+.++..+-.+ .+...++... +.... .++..+.+ +.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~-~~~~~-i~id~iR~-l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE-EADKT-IKVDQVRE-LVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-CCCCC-CCHHHHHH-HHHHH
Confidence 5568899999999999999999865321 1222232210 00000 12222221 22222
Q ss_pred hCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-ccccC-CcceEEEcCCCC
Q 041079 217 LKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLRNC-SVKEIYEMKELR 292 (945)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~ 292 (945)
.... ..+++-++|+|+++.. +....|+..+....+++.+|+||.+.. ++... .-.+.+.+.+++
T Consensus 99 ~~~~------------~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 99 VQTA------------QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred hhcc------------ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 1110 1233444567999764 446666655554456778888887653 33332 234679999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHh
Q 041079 293 DDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEIL 335 (945)
Q Consensus 293 ~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 335 (945)
.+++.+.+.... .. . ..+.+..++..++|.|+....+
T Consensus 167 ~~~~~~~L~~~~-~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 167 NEESLQWLQQAL-PE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHHhc-cc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999887653 11 1 1234557788999999755444
No 175
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0018 Score=73.37 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhhcccC-EEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCc
Q 041079 144 VESRVVAIQSLLGAAP-LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENV 222 (945)
Q Consensus 144 r~~~l~~l~~~L~~~~-~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~ 222 (945)
+..-+.++.+.+...+ ++.|.|+-++||||+++.+....... .+++......... ..+.......
T Consensus 22 ~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~~---------- 87 (398)
T COG1373 22 RRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRAY---------- 87 (398)
T ss_pred HHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHHH----------
Confidence 3355566666666644 99999999999999997776655444 4555422211111 1111111111
Q ss_pred cCCHHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccccccC------CcceEEEcCCCCHHHH
Q 041079 223 ILDIDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRNC------SVKEIYEMKELRDDHA 296 (945)
Q Consensus 223 ~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 296 (945)
...-..++.+|+||.|.....|+..+..+-..++. +|++|+-+..+.... |-...+++-||+..|-
T Consensus 88 -------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 88 -------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred -------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 11111278999999999999988877766555555 899988876543322 3456899999999998
Q ss_pred HHHH
Q 041079 297 LELF 300 (945)
Q Consensus 297 ~~Lf 300 (945)
..+-
T Consensus 160 l~~~ 163 (398)
T COG1373 160 LKLK 163 (398)
T ss_pred Hhhc
Confidence 7754
No 176
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=3.4e-05 Score=78.16 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=25.2
Q ss_pred cCCCCCCCEEeccCCCCCCccCCcc----CCcccCccccccCCCCcc
Q 041079 613 LFKLKSLEDLNLCRCSNLRRFPEEI----GNVEASNSLYAYGTASSE 655 (945)
Q Consensus 613 i~~l~~L~~L~Ls~~~~~~~lp~~l----~~l~~L~~L~l~~~~~~~ 655 (945)
+-+|+.|+..+||.|.+...+|+.+ ..-+.|.+|.+++|+.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 4466777777777766665555443 334556666666655443
No 177
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.41 E-value=0.0037 Score=72.17 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=84.1
Q ss_pred CCCccchHHHHHHHHhhh---c---------ccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCC-
Q 041079 138 NNQLVGVESRVVAIQSLL---G---------AAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGG- 204 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L---~---------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~- 204 (945)
.+++.|.+...+.+.... . ..+-|.++|++|.|||.+|+++++.+...| +..+.........+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 456788887766665421 1 156799999999999999999999865332 11111110000000
Q ss_pred HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--------------HHHHHhcCCCCCCCCCeEEEE
Q 041079 205 LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--------------QIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 205 l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~~~~gs~IIiT 270 (945)
-....+++ +...-...+++|++|+++..- .+..++..+.....+--||.|
T Consensus 303 se~~l~~~----------------f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 303 SESRMRQM----------------IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred HHHHHHHH----------------HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 01111111 111123478999999986421 012222222212234445667
Q ss_pred ecCcccc-----ccCCcceEEEcCCCCHHHHHHHHHHhhhc
Q 041079 271 TRNKQVL-----RNCSVKEIYEMKELRDDHALELFSRHAFK 306 (945)
Q Consensus 271 TR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 306 (945)
|.+.+.+ .....+..+.++..+.++-.++|..+..+
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 7655422 22235678999999999999999988744
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.3e-05 Score=73.03 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=84.4
Q ss_pred ccceeeecCCCCCCCCC----CccCCcccceEeecCCCCcccCccccCC-ccccEEeccccccccccCcccCCCCCCCEE
Q 041079 548 ELVILNLRGCKGLKKLP----EISSLSNIEKIILSGTAIEELPSSVGCL-SGLVLLHLQACKMLKSLPCSLFKLKSLEDL 622 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp----~~~~l~~L~~L~Ls~~~i~~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 622 (945)
.+..++|+.|.. ..++ .+....+|...+|++|.+.++|+.+... +.+++|+|.+|. +..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 344557777763 3333 3556778888899999999998876543 588999999887 88899888899999999
Q ss_pred eccCCCCCCccCCccCCcccCccccccCCCCccCCcc
Q 041079 623 NLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS 659 (945)
Q Consensus 623 ~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~ 659 (945)
+++.|+. ..+|..+..+.+|-.|+..+|...++|..
T Consensus 106 Nl~~N~l-~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPL-NAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCcc-ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9988664 45677777788888899888888888765
No 179
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.38 E-value=0.0026 Score=68.27 Aligned_cols=159 Identities=23% Similarity=0.333 Sum_probs=98.1
Q ss_pred CCCCccchHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+.+.+|+.++..+..++.. ...|-|+|-.|.|||.+.+++.+.... ..+|+..+.. +....+...
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ec-----ft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVEC-----FTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHh-----ccHHHHHHH
Confidence 346788999999999999987 456689999999999999999997632 3467754433 667788888
Q ss_pred HHHHHh-CCCCcc---C---C----HHHHHH--HHc--CCCcEEEEecCCChHHHHH-----HhcCCCCCCCCCeEEEEe
Q 041079 212 LLSKLL-KHENVI---L---D----IDLNFR--RLS--RMKVLIVFDDVTCFRQIKS-----LIRSPDWFMADSRIIITT 271 (945)
Q Consensus 212 ll~~l~-~~~~~~---~---~----~~~l~~--~L~--~kr~LlVLDdv~~~~~l~~-----l~~~~~~~~~gs~IIiTT 271 (945)
|+.+.. ..++.. . + ...+.+ ... ++.++||||+++...+.++ ++....-.....-.|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 888874 222111 1 1 222222 222 4689999999977654222 211110001123334444
Q ss_pred cCc---cccccCCcce--EEEcCCCCHHHHHHHHHHh
Q 041079 272 RNK---QVLRNCSVKE--IYEMKELRDDHALELFSRH 303 (945)
Q Consensus 272 R~~---~v~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 303 (945)
-.. .....+|... ++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322 1222234333 5677888999999988763
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00094 Score=74.08 Aligned_cols=133 Identities=15% Similarity=0.192 Sum_probs=84.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...+.|||..|.|||.|++++.+......+...++.. ........++..+.. ...+.+++.. .-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~---------~se~f~~~~v~a~~~-----~~~~~Fk~~y--~~ 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL---------TSEDFTNDFVKALRD-----NEMEKFKEKY--SL 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec---------cHHHHHHHHHHHHHh-----hhHHHHHHhh--cc
Confidence 5689999999999999999999998877775444431 222333344443332 1245566666 44
Q ss_pred cEEEEecCCCh----HHHHHHhcCCC-CCCCCCeEEEEecCcc---------ccccCCcceEEEcCCCCHHHHHHHHHHh
Q 041079 238 VLIVFDDVTCF----RQIKSLIRSPD-WFMADSRIIITTRNKQ---------VLRNCSVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 238 ~LlVLDdv~~~----~~l~~l~~~~~-~~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
=++++||++-. ..-+++...++ ....|-.||+|++... +.......-++++.+++.+...+++.++
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 48889998432 11222322221 1124458999996432 2223334568999999999999999987
Q ss_pred hhc
Q 041079 304 AFK 306 (945)
Q Consensus 304 af~ 306 (945)
+-.
T Consensus 257 a~~ 259 (408)
T COG0593 257 AED 259 (408)
T ss_pred HHh
Confidence 643
No 181
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=9e-05 Score=76.15 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=19.0
Q ss_pred CcccCccccccCCCCccCCc--cccCCCCCcEEEcccCC
Q 041079 639 NVEASNSLYAYGTASSEVPS--SIVRSNNFRFLSFRESR 675 (945)
Q Consensus 639 ~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~ 675 (945)
.++.+.-|+|+.|++..+.+ .+.+++.|+.|.++++.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 33445566666666665543 34444555555544443
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=3.6e-05 Score=92.20 Aligned_cols=61 Identities=31% Similarity=0.444 Sum_probs=36.2
Q ss_pred CCcccceEeecCCCCcccCccccCCccccEEecccccccc-ccCcccCCCCCCCEEeccCCCC
Q 041079 568 SLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLK-SLPCSLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 568 ~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~ 629 (945)
++++|+.||+|++.|+.+ ..+++|++|+.|.+++=.... .--..+.+|++|++||+|....
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 466677777777777666 557777777777766533211 0011355677777777776443
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.36 E-value=0.0051 Score=76.07 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=39.7
Q ss_pred CCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 139 NQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
+..+|.+...++|.+++.. .+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578999988888876642 45799999999999999999999876554
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.31 E-value=0.0024 Score=78.67 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=92.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..+++.|++..++++.+.+.. .+.|.++|++|.|||+||+++++.....| +.+. ..+....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 445689999999998877632 46789999999999999999999775433 2221 1111100
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCCCC-CCCCe
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPDWF-MADSR 266 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~-~~gs~ 266 (945)
..+ ..... ...+.......+.+|+||+++.. .....+...++.. ..+..
T Consensus 252 ~~g~~~~~l----------------~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 252 YYGESEERL----------------REIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred cccHHHHHH----------------HHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 000 00111 11222223456789999998542 1122333322221 23334
Q ss_pred EEE-EecCccccc-c----CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 267 III-TTRNKQVLR-N----CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 267 IIi-TTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
++| ||....-+. . ...+..+.+...+.++-.+++..+.-..... . .....++++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCC
Confidence 444 444332111 1 1234578888889999888888654221111 1 112455667777654
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=6.6e-05 Score=90.00 Aligned_cols=132 Identities=21% Similarity=0.160 Sum_probs=68.6
Q ss_pred ccccEEeccccccccc-cCcccC-CCCCCCEEeccCCCCC-CccCCccCCcccCccccccCCCCccCCccccCCCCCcEE
Q 041079 593 SGLVLLHLQACKMLKS-LPCSLF-KLKSLEDLNLCRCSNL-RRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFL 669 (945)
Q Consensus 593 ~~L~~L~L~~~~~l~~-lp~~i~-~l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L 669 (945)
++|++||+++...... -|..++ .||+|+.|.++|-... ..+-....++++|..||++++++..+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4556666655332211 111222 3566666666652221 12233344556666777777766666 566667777766
Q ss_pred EcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC-------cccCCCCCCCEEECCCCCCc
Q 041079 670 SFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP-------ESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 670 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-------~~l~~l~~L~~L~Ls~n~l~ 730 (945)
.+.+-...... .-..+-.|++|+.||+|.......+ +.-..||+|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~-----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQ-----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchh-----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66554321110 0111335667777777665444222 12234677788888777665
No 186
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.28 E-value=0.00093 Score=70.41 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=60.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC-------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------- 225 (945)
.+.++|.|.+|.||||||+.++++++.+|+..+++..+.+...+ +..+.+++...-..... ...+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 77899999999999999999999998889888888877665433 44455544432111100 0011
Q ss_pred ----HHHHHHHH--c-CCCcEEEEecCCChHH
Q 041079 226 ----IDLNFRRL--S-RMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 226 ----~~~l~~~L--~-~kr~LlVLDdv~~~~~ 250 (945)
.-.+-+++ + ++.+|+++||+-...+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 12233344 3 8999999999865543
No 187
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0051 Score=75.88 Aligned_cols=167 Identities=18% Similarity=0.281 Sum_probs=94.1
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
-.++.|.+...++|.+.+.. .+-|.++|++|.|||++|+++++.....| +.+. ..+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~~----- 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GPE----- 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hHH-----
Confidence 35678888888888776531 45689999999999999999999865443 1111 101
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCH-HHHHHHHcCCCcEEEEecCCCh--------------HHHHHHhcCCCCC--CCCC
Q 041079 203 GGLACLRQELLSKLLKHENVILDI-DLNFRRLSRMKVLIVFDDVTCF--------------RQIKSLIRSPDWF--MADS 265 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~gs 265 (945)
+++...++. .... ..+...-...+.+|++|+++.. ..+..++..++.. ..+-
T Consensus 523 ---------l~~~~vGes--e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 523 ---------ILSKWVGES--EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ---------HhhcccCcH--HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111100000 0001 1112222456789999998542 1133444443322 2344
Q ss_pred eEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCC
Q 041079 266 RIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 266 ~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 328 (945)
-||.||...+.+.. -..+..+.++..+.++-.++|..+.-+... ++.+ ...+++.+.|.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~ 656 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGY 656 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCC
Confidence 45667765543321 135678999999999999999866533221 1222 24455666654
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.23 E-value=0.00087 Score=75.10 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=45.2
Q ss_pred CCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhc--cccceEEEE
Q 041079 139 NQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISS--DFEGSCFLE 193 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 193 (945)
.++++.+..++.+...|...+.|.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4678889999999999888889999999999999999999997754 344554543
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=2e-05 Score=71.80 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=52.6
Q ss_pred CCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 692 GLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
.++.++.|+|++|.++++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|..
T Consensus 75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 3457888999999999999999999999999999999998998888888888888887764
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0022 Score=75.96 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=41.1
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..++++|-+..++++..++.. .+++.|+|++|.||||+++.++..+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 667899999999999998875 46799999999999999999998653
No 191
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.0011 Score=70.15 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=24.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
...+.|+|++|+|||+||.++.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 6789999999999999999999876543
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=97.21 E-value=0.0013 Score=69.89 Aligned_cols=35 Identities=23% Similarity=0.139 Sum_probs=26.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
...+.|+|.+|+|||+||.+++......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 67788999999999999999988754433334444
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0012 Score=62.71 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=27.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
+.+.|+|++|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999876655344444
No 194
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.17 E-value=0.011 Score=72.65 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=84.6
Q ss_pred CCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH
Q 041079 139 NQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
.+.+|.+...++|.++|.. ...+.++|++|+||||+|+.++..+...|-... +..++ +...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~-------d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVR-------DEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCC-------CHHHhcc
Confidence 4589999999999887763 568999999999999999999987765543222 11111 1111110
Q ss_pred HHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChHH------HHHHhcCCCCC---------------CCCCeEE
Q 041079 211 ELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFRQ------IKSLIRSPDWF---------------MADSRII 268 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~------l~~l~~~~~~~---------------~~gs~II 268 (945)
.- ....+. .... ...+. ......-+++||.++.... ...|...++.. -.+.-+|
T Consensus 394 ~~-~~~~g~--~~G~~~~~l~-~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 394 HR-RTYIGS--MPGKLIQKMA-KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ch-hccCCC--CCcHHHHHHH-hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 00 000000 0000 11122 1222345788999965421 23444333210 1233344
Q ss_pred EEecCcccccc-CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 269 ITTRNKQVLRN-CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 269 iTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.||....+... .+-..++++.+++.+|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55544332111 1223578999999999999888766
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0068 Score=67.00 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=87.4
Q ss_pred Cccc-hHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEEEe
Q 041079 140 QLVG-VESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFLEN 194 (945)
Q Consensus 140 ~~vG-r~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~ 194 (945)
.++| -+..++.+...+.. .....++|+.|+||||+|+.+++.+-.. ++...++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4566 66677778777765 6677999999999999999998865321 222222210
Q ss_pred chhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEec
Q 041079 195 VREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTR 272 (945)
Q Consensus 195 ~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR 272 (945)
. ... ..+..+. ++...+... -..+.+=++|+|+++.. +....|+..+....+++.+|++|.
T Consensus 86 ~---~~~-i~id~ir-~l~~~~~~~------------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 86 D---GQS-IKKDQIR-YLKEEFSKS------------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred c---ccc-CCHHHHH-HHHHHHhhC------------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 0 000 1111111 111111100 02244557889998754 345666666655557888888776
Q ss_pred Ccc-ccccC-CcceEEEcCCCCHHHHHHHHHHh
Q 041079 273 NKQ-VLRNC-SVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 273 ~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
+.. +.... .-...+++.+++.++..+.+...
T Consensus 149 ~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 149 NKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 543 33322 23468999999999998888653
No 196
>PRK10536 hypothetical protein; Provisional
Probab=97.13 E-value=0.0024 Score=66.29 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=76.2
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHH-h-hccccceEEEEechhhhhc----cCCHHHH--
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDK-I-SSDFEGSCFLENVREESQR----SGGLACL-- 208 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~s~~----~~~l~~l-- 208 (945)
+...+.++......+...+....+|.+.|.+|.|||+||.+++.+ + ...|+..+.....-+..+. +.++..-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 445677888888888888877789999999999999999999874 3 4445544433211111110 0111111
Q ss_pred --HHH---HHHHHhCCCC-c------cCC-HHHHHHHHcCCC---cEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEE
Q 041079 209 --RQE---LLSKLLKHEN-V------ILD-IDLNFRRLSRMK---VLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 209 --~~~---ll~~l~~~~~-~------~~~-~~~l~~~L~~kr---~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 270 (945)
..- .+..+.+... . ... .-.-...+++.. -+||+|.+.+. .+...++... +.+|++|+|
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~ 209 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEe
Confidence 111 1111111100 0 000 000012445544 49999998654 5677777554 689999997
Q ss_pred ecCc
Q 041079 271 TRNK 274 (945)
Q Consensus 271 TR~~ 274 (945)
--..
T Consensus 210 GD~~ 213 (262)
T PRK10536 210 GDIT 213 (262)
T ss_pred CChh
Confidence 6543
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.011 Score=64.47 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=95.8
Q ss_pred HHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc------------------ccceEEEEechhhhhccCC
Q 041079 146 SRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD------------------FEGSCFLENVREESQRSGG 204 (945)
Q Consensus 146 ~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~------------------F~~~~~~~~~~~~s~~~~~ 204 (945)
...+.+...+.. ...+.++|+.|+||+++|..+++.+-.. .+...++.-. . .. .+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p-~~--~~ 86 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-P-NR--TG 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-C-Cc--cc
Confidence 344555555554 5578899999999999999999865321 1111222100 0 00 00
Q ss_pred HHHHHHHHHHHHhCCCCccCCHHHHH---HHH-----cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 205 LACLRQELLSKLLKHENVILDIDLNF---RRL-----SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 205 l~~l~~~ll~~l~~~~~~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
. ........+.++ +.+ .+++-++|+|+++... ...+|+..+....+++.+|++|.+.
T Consensus 87 ~-------------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 87 D-------------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred c-------------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 0 000000122222 222 2456688999997653 4555665555445678777777654
Q ss_pred -cccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 275 -QVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 275 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
.++... .-...+.+.+++.+++.+.+.... . + ...+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 344332 234688999999999998886531 1 1 2235678999999998665444
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.023 Score=61.82 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=95.4
Q ss_pred HHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc--------------------cccceEEEEechhhhhccC
Q 041079 147 RVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS--------------------DFEGSCFLENVREESQRSG 203 (945)
Q Consensus 147 ~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~s~~~~ 203 (945)
..+++.+.+.. ...+.+.|+.|+||+++|+.++..+-. ..+...++....+ ... -
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~-I 88 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKS-I 88 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCc-C
Confidence 34455555544 567889999999999999999885421 1122222211000 000 1
Q ss_pred CHHHHHHHHHHHHhCCCCccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-c
Q 041079 204 GLACLRQELLSKLLKHENVILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK-Q 275 (945)
Q Consensus 204 ~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~ 275 (945)
++..+ ..+.+.+ .+++=++|+|+++.. ....+|+..+....+++.+|++|.+. .
T Consensus 89 ~vdqi------------------R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 89 TVEQI------------------RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred CHHHH------------------HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 11111 1111222 234557888998765 34666666665556778777776654 3
Q ss_pred ccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 276 VLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 276 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
++... .-.+.+.+.+++.+++.+.+.... .+ .+..++..++|.|+....+.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 44432 234689999999999999886532 11 13467889999998765543
No 199
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.0092 Score=64.81 Aligned_cols=151 Identities=17% Similarity=0.289 Sum_probs=80.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhh-hccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREES-QRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
.+.++|||++|.|||.+|++++.+....| +.....+.. .-....++..++++..... ..+-+++
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~-----------~a~~~~a 212 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAAD-----------IIKKKGK 212 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHH-----------HhhccCC
Confidence 78999999999999999999999876543 221222111 1112233444443332210 0012468
Q ss_pred CcEEEEecCCCh------------HHH--HHHhcCCC----------C----CCCCCeEEEEecCccccccC-----Ccc
Q 041079 237 KVLIVFDDVTCF------------RQI--KSLIRSPD----------W----FMADSRIIITTRNKQVLRNC-----SVK 283 (945)
Q Consensus 237 r~LlVLDdv~~~------------~~l--~~l~~~~~----------~----~~~gs~IIiTTR~~~v~~~~-----~~~ 283 (945)
.++|++|++|.. .++ ..|+...+ | ..++-.||+||.+.+.+... ..+
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 999999998521 121 23332211 2 23556778888776543211 123
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc
Q 041079 284 EIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 284 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 329 (945)
..| ..-+.++-.+++..+. +....+ ..-..++++...|=|
T Consensus 293 k~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 293 KFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQP 332 (413)
T ss_pred cee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCC
Confidence 333 3456777777777654 322222 123344555555544
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=9.3e-05 Score=75.10 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=20.0
Q ss_pred cCCccccEEeccccccccccCcc----cCCCCCCCEEeccCCC
Q 041079 590 GCLSGLVLLHLQACKMLKSLPCS----LFKLKSLEDLNLCRCS 628 (945)
Q Consensus 590 ~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~Ls~~~ 628 (945)
-++++|+..+|++|-+-...|.. |.+-+.|++|.|++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34555555555555543333322 3345566666666543
No 201
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0091 Score=69.32 Aligned_cols=151 Identities=21% Similarity=0.328 Sum_probs=89.8
Q ss_pred CCCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
+.+-+|.+...++|.++|.- ..++.++|+||+|||.|++.+++-+.+.|-.. -+..+++.++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHH---------
Confidence 35678999999999998864 67999999999999999999999888777432 2223333221
Q ss_pred HHHHHHHhCCCCcc-CC-HHHH---HHHHcCCCcEEEEecCCChHH------HHHHhcCCCC-----C--------CCCC
Q 041079 210 QELLSKLLKHENVI-LD-IDLN---FRRLSRMKVLIVFDDVTCFRQ------IKSLIRSPDW-----F--------MADS 265 (945)
Q Consensus 210 ~~ll~~l~~~~~~~-~~-~~~l---~~~L~~kr~LlVLDdv~~~~~------l~~l~~~~~~-----~--------~~gs 265 (945)
+.++.... .. ...+ ....+.+.=+++||.+|.... -.+|+.-++- | -.=|
T Consensus 392 ------IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 392 ------IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ------hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11111110 00 1112 223356777999999965321 2222222210 1 1124
Q ss_pred eEE-EEecCc-c-c-cccCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 266 RII-ITTRNK-Q-V-LRNCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 266 ~II-iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.|+ |||-+. + + ...+....++++.+-+++|=+++-.++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 454 444332 2 1 1122334689999999999888877765
No 202
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.03 E-value=0.015 Score=62.23 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 146 SRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 146 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.-++++...+...+-|.|.|.+|+|||++|+++++...
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 33445555555567788999999999999999998654
No 203
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0087 Score=68.79 Aligned_cols=145 Identities=20% Similarity=0.262 Sum_probs=87.6
Q ss_pred CccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccce----EEEEechhhhh
Q 041079 140 QLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGS----CFLENVREESQ 200 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~----~~~~~~~~~s~ 200 (945)
++=|.++...+|.+.... .+-|..+|+||.|||++|+++++.-...|-.+ .|-..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v----- 509 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV----- 509 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc-----
Confidence 444577777777654432 67899999999999999999999877666432 110000
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-------------HHHHHhcCCCCCCCCCeE
Q 041079 201 RSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-------------QIKSLIRSPDWFMADSRI 267 (945)
Q Consensus 201 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gs~I 267 (945)
..-++...+++++ .-+--+.+|.||.+|... .+..|+...+.......|
T Consensus 510 --GeSEr~ir~iF~k----------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 510 --GESERAIREVFRK----------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred --CchHHHHHHHHHH----------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 1112222233222 222345888899875432 255666666544444444
Q ss_pred EE---EecCcccccc-C---CcceEEEcCCCCHHHHHHHHHHhhhcC
Q 041079 268 II---TTRNKQVLRN-C---SVKEIYEMKELRDDHALELFSRHAFKQ 307 (945)
Q Consensus 268 Ii---TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~af~~ 307 (945)
+| |.|...+-.. + ..++++.++.-+.+.-.++|..++-+-
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 44 3343322111 1 367789999999999999999988443
No 204
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.0013 Score=70.09 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=29.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 193 (945)
...+.++|.+|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987665 44556664
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.012 Score=64.12 Aligned_cols=170 Identities=11% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccc--c-ceEEEE-echhhh-hccCCHHHHHHHHHHHHhCC
Q 041079 148 VVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDF--E-GSCFLE-NVREES-QRSGGLACLRQELLSKLLKH 219 (945)
Q Consensus 148 l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~-~~~~~~-~~~~~s-~~~~~l~~l~~~ll~~l~~~ 219 (945)
.+.+.+.+.. .....+.|+.|+||+++|++++..+-..- . ..|=.+ ..+... ..++++..+ ...
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EPI 82 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------ccc
Confidence 3445555544 55778999999999999999998653211 0 000000 000000 000111000 000
Q ss_pred CCccCCHHHHH---HHH-----cCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecCc-cccccC-CcceEEE
Q 041079 220 ENVILDIDLNF---RRL-----SRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRNK-QVLRNC-SVKEIYE 287 (945)
Q Consensus 220 ~~~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~ 287 (945)
+...-..+.++ +.+ .+++=++|+|+++... ...+|+..+....+++.+|++|.+. .++... .-...+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00000122222 222 2456678899997653 4666666665556778888777765 344332 2346899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 288 MKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 288 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
+.+++.+++.+.+..... .+ ...+..++..++|.|+..
T Consensus 163 ~~~~~~~~~~~~L~~~~~-----~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSS-----AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhc-----cC--hHHHHHHHHHcCCCHHHH
Confidence 999999999988877541 11 123556788899999633
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.97 E-value=0.0014 Score=65.28 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=43.5
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
...-+.++|.+|+|||.||.++++....+=..+.|+. ...+... +..... ......+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-----------~~~L~~~----l~~~~~-~~~~~~~~~~l~~- 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-----------ASDLLDE----LKQSRS-DGSYEELLKRLKR- 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-----------HHHHHHH----HHCCHC-CTTHCHHHHHHHT-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-----------cCceecc----cccccc-ccchhhhcCcccc-
Confidence 3667999999999999999999987655434455653 1223333 322211 1123334455553
Q ss_pred CcEEEEecCCC
Q 041079 237 KVLIVFDDVTC 247 (945)
Q Consensus 237 r~LlVLDdv~~ 247 (945)
-=||||||+..
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 45777999854
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.96 E-value=0.0064 Score=59.72 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=74.1
Q ss_pred chHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc--------------------cccceEEEEechhhh
Q 041079 143 GVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS--------------------DFEGSCFLENVREES 199 (945)
Q Consensus 143 Gr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~s 199 (945)
|-+..++.+.+.+.. ...+.++|..|+||+|+|+++++.+-. ..+...++..... .
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-K 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-S
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-c
Confidence 456667777777766 667899999999999999999986522 2333444421100 0
Q ss_pred hccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-c
Q 041079 200 QRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-V 276 (945)
Q Consensus 200 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v 276 (945)
.. .....+. ++...+.... ..+++=++|+||++.. +...+|+..+.....++++|++|++.. +
T Consensus 80 ~~-i~i~~ir-~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 80 KS-IKIDQIR-EIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp SS-BSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred ch-hhHHHHH-HHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 01 2222222 3333222111 1245668999999864 345666655554457889999888765 2
Q ss_pred cccC-CcceEEEcCCCC
Q 041079 277 LRNC-SVKEIYEMKELR 292 (945)
Q Consensus 277 ~~~~-~~~~~~~l~~L~ 292 (945)
+... .-...+.+++++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 2221 223466666653
No 208
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.94 E-value=0.0056 Score=61.10 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=61.6
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc-cccc-eEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS-DFEG-SCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
...++||-++.++.+.-.-.. .+.+.|.||+|+||||-+..+++++-. .|.. +.=+. .|++ .++..+...|
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASde-RGIDvVRn~I 99 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDE-RGIDVVRNKI 99 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----Cccc-cccHHHHHHH
Confidence 456789999999998877766 788999999999999999999987533 2322 22221 2233 4554444443
Q ss_pred HHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCChH
Q 041079 213 LSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~ 249 (945)
-.-... +-.| .++.-++|||.+|+..
T Consensus 100 K~FAQ~-----------kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 100 KMFAQK-----------KVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHh-----------hccCCCCceeEEEeeccchhh
Confidence 211100 0011 2445688999998754
No 209
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.032 Score=57.20 Aligned_cols=182 Identities=15% Similarity=0.212 Sum_probs=102.6
Q ss_pred HHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC--
Q 041079 149 VAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD-- 225 (945)
Q Consensus 149 ~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-- 225 (945)
..+...+.. .+++.++|.-|.|||+++|++....-..=-.++.+. ....+...+...+..++.........
T Consensus 41 ~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 41 LMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHH
Confidence 334444444 559999999999999999966554332211222222 22255567777777777663221111
Q ss_pred HHHHHHHH-----cCCC-cEEEEecCCCh--HHHHHHhc--CCC-CCCCCCeEEEEecCcccccc--------C-CcceE
Q 041079 226 IDLNFRRL-----SRMK-VLIVFDDVTCF--RQIKSLIR--SPD-WFMADSRIIITTRNKQVLRN--------C-SVKEI 285 (945)
Q Consensus 226 ~~~l~~~L-----~~kr-~LlVLDdv~~~--~~l~~l~~--~~~-~~~~gs~IIiTTR~~~v~~~--------~-~~~~~ 285 (945)
...+.+.| +++| +.+++|+..+. ++++.+.- ... ....--+|+..-. +.+... . .-..+
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEE
Confidence 23333322 5677 99999998553 23444332 221 1111112332221 111110 0 01124
Q ss_pred -EEcCCCCHHHHHHHHHHhhhcCCCCCcc-HHHHHHHHHHHhcCCcchHHHhhc
Q 041079 286 -YEMKELRDDHALELFSRHAFKQNHPDVG-YEELSSRVIQYAQGVPLALEILGC 337 (945)
Q Consensus 286 -~~l~~L~~~ea~~Lf~~~af~~~~~~~~-~~~l~~~i~~~~~GlPLal~~lg~ 337 (945)
|++.+++.++...++..+.-+...+.+- ..+....|.....|.|.++..++.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999999998888776554433322 245677788899999999877663
No 210
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.017 Score=66.65 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=85.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...|.|.|..|+|||+||+++++.+...- .+++..+....-....+..+++.+- ..+.+.+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~-------------~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLN-------------NVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHH-------------HHHHHHHhhCC
Confidence 67899999999999999999999886433 2333222211111134566665552 33445677889
Q ss_pred cEEEEecCCChH---------------HHHHHh-cCCC-CCCCCCe--EEEEecCccccc-----cCCcceEEEcCCCCH
Q 041079 238 VLIVFDDVTCFR---------------QIKSLI-RSPD-WFMADSR--IIITTRNKQVLR-----NCSVKEIYEMKELRD 293 (945)
Q Consensus 238 ~LlVLDdv~~~~---------------~l~~l~-~~~~-~~~~gs~--IIiTTR~~~v~~-----~~~~~~~~~l~~L~~ 293 (945)
-+|||||++... .+..++ .... ....+.+ +|.|....+-+. ..-.+.+..++.+..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 999999985321 011111 0000 1123444 344444332211 111334678899988
Q ss_pred HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-cchHH
Q 041079 294 DHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV-PLALE 333 (945)
Q Consensus 294 ~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~ 333 (945)
.+--++++... .....+....+ ..-+..+++|. |.-++
T Consensus 576 ~~R~~IL~~~~-s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 576 TRRKEILTTIF-SKNLSDITMDD-LDFLSVKTEGYLATDLV 614 (952)
T ss_pred hHHHHHHHHHH-HhhhhhhhhHH-HHHHHHhcCCccchhHH
Confidence 88887776544 22222222222 22266677663 43333
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.012 Score=66.74 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=85.2
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
...++=|++..+.++.+++.. .+-|.++|++|.|||.||++++++..-.| +.. +.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~i----sA-- 256 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSI----SA-- 256 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eee----cc--
Confidence 346788999999999887754 67899999999999999999999875443 220 11
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-------------HHHHHhcCCCC------CCC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-------------QIKSLIRSPDW------FMA 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~------~~~ 263 (945)
.++++.+.++.... -.+.+.+.-..-++++++|++|-.. .+..|+...+. ++.
T Consensus 257 -------peivSGvSGESEkk-iRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 257 -------PEIVSGVSGESEKK-IRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred -------hhhhcccCcccHHH-HHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 12333332221100 0222333345679999999996421 03334333221 123
Q ss_pred CCeEEE-EecCcccc---ccC-CcceEEEcCCCCHHHHHHHHHHhh
Q 041079 264 DSRIII-TTRNKQVL---RNC-SVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 264 gs~IIi-TTR~~~v~---~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+.-||- |+|-..+- +.. ..+..+.+.--++.+-.+++...+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 323332 44433321 112 244567777777776666666555
No 212
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.93 E-value=0.026 Score=60.02 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=104.9
Q ss_pred CCccchH---HHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhccccc------eEEEEechhhhhccCC
Q 041079 139 NQLVGVE---SRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSDFEG------SCFLENVREESQRSGG 204 (945)
Q Consensus 139 ~~~vGr~---~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~s~~~~~ 204 (945)
+.+||-. ..++.+.+++.. .+-+.|+|.+|+|||++++++.+.....++. ++.+. .....+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCC
Confidence 4455543 445556666655 4578999999999999999999876544432 22222 223378
Q ss_pred HHHHHHHHHHHHhCCCCccCC----HHHHHHHHcC-CCcEEEEecCCCh-----HHHHH---HhcCCCCCCCCCeEEEEe
Q 041079 205 LACLRQELLSKLLKHENVILD----IDLNFRRLSR-MKVLIVFDDVTCF-----RQIKS---LIRSPDWFMADSRIIITT 271 (945)
Q Consensus 205 l~~l~~~ll~~l~~~~~~~~~----~~~l~~~L~~-kr~LlVLDdv~~~-----~~l~~---l~~~~~~~~~gs~IIiTT 271 (945)
...+...|+..+...-..... ...+...++. +-=+||+|.+.+. .+-.. .+..+...-.=+-|.|-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 889999999999876544333 2333444543 4458899999653 11111 111221112334556666
Q ss_pred cCc--------cccccCCcceEEEcCCCCHH-HHHHHHHHhhh--cCCCC-CccHHHHHHHHHHHhcCCcch
Q 041079 272 RNK--------QVLRNCSVKEIYEMKELRDD-HALELFSRHAF--KQNHP-DVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 272 R~~--------~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af--~~~~~-~~~~~~l~~~i~~~~~GlPLa 331 (945)
++- +++.. ...+.++....+ |...|+..... .-..+ .-...+++..|...++|+.--
T Consensus 189 ~~A~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 189 REAYRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHHHHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 543 22222 235666666554 44444433221 11111 123467889999999997643
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.021 Score=62.90 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++|+++|.+|+||||++..++..+..+=..+.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 579999999999999999999987754433344443
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.89 E-value=0.024 Score=70.91 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=41.5
Q ss_pred CCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 139 NQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..++|.+..++.+...+.. ...+.++|++|+|||++|+.++......-...+.+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 5689999999998887754 23578999999999999999999765443333333
No 215
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.0014 Score=64.14 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=23.6
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCcc
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE 655 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 655 (945)
...+||++|. +..++. +..++.|.+|.|++|.....-|.--.-+++|..|.+.+|++.+
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 3444444443 333321 3344455555554444332222222223334444444444333
No 216
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.099 Score=58.15 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=106.6
Q ss_pred hHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHH-HHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHH-----
Q 041079 144 VESRVVAIQSLLGA--APLLGIWGIGGIGKTIIA-RAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSK----- 215 (945)
Q Consensus 144 r~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~----- 215 (945)
|.+.+++|..||.. ...|.|.|+-|.||+.|+ .++... .+.+.+++ +.+.... .+-..+.+.+.++
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~----r~~vL~ID-C~~i~~a-r~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD----RKNVLVID-CDQIVKA-RGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC----CCCEEEEE-ChHhhhc-cChHHHHHHHHHhcCCCc
Confidence 55678999999988 779999999999999999 555442 22244443 2222221 1112222222222
Q ss_pred ------------------HhCCCCccCC-------------HHHHHH-------------------HHc---CCCcEEEE
Q 041079 216 ------------------LLKHENVILD-------------IDLNFR-------------------RLS---RMKVLIVF 242 (945)
Q Consensus 216 ------------------l~~~~~~~~~-------------~~~l~~-------------------~L~---~kr~LlVL 242 (945)
+.+.+...+. ...+++ +|. .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 2222211111 111111 111 12568999
Q ss_pred ecCCC-----------hHHHHHHhcCCCCCCCCCeEEEEecCcccccc----C--CcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 243 DDVTC-----------FRQIKSLIRSPDWFMADSRIIITTRNKQVLRN----C--SVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 243 Ddv~~-----------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
||... ..+|.+.+.. .+=.+||++|-+...... + .+.+.+.+...+.+.|.++...+.-
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 99732 2234444433 245689999987654332 2 2446788999999999999988774
Q ss_pred cCCCC-------------C-----ccHHHHHHHHHHHhcCCcchHHHhhcccc
Q 041079 306 KQNHP-------------D-----VGYEELSSRVIQYAQGVPLALEILGCSLF 340 (945)
Q Consensus 306 ~~~~~-------------~-----~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 340 (945)
..... + .....-....++.+||=-.-|..+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 32110 0 12333445667777887777777777775
No 217
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.011 Score=59.54 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=43.4
Q ss_pred CCCCccchHHHHHHHHhhhc----c--cCEEEEEecCCCcHHHHHHHHHHHhhccccceE
Q 041079 137 NNNQLVGVESRVVAIQSLLG----A--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSC 190 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~----~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 190 (945)
+-..++|.|...+.+.+-.. . ..-|.+||.-|.||+.|++++.+.+......-+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 44678999988887765433 3 668899999999999999999999888776633
No 218
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.84 E-value=0.01 Score=73.08 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 138 NNQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...++|.+..++.+...+.. ..++.++|++|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 35688999888888777653 23578999999999999999999773
No 219
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.82 E-value=0.0053 Score=67.35 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=61.8
Q ss_pred HHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcccc-ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC
Q 041079 150 AIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFE-GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD 225 (945)
Q Consensus 150 ~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~ 225 (945)
++.+.+.. .+.++|+|.+|+|||||++.+++.+..+.+ ..+++..+.+. ...+..+.+.+...+.........
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCCH
Confidence 35555554 678899999999999999999998876653 33344444332 255677777776655443211111
Q ss_pred ---------HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 ---------IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ---------~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
...+-+++ ++++++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 11112222 5899999999985544
No 220
>PRK08118 topology modulation protein; Reviewed
Probab=96.82 E-value=0.0025 Score=62.97 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=26.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhc---cccceEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISS---DFEGSCF 191 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 191 (945)
+.|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35899999999999999999997643 3565554
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00084 Score=68.60 Aligned_cols=83 Identities=23% Similarity=0.186 Sum_probs=54.7
Q ss_pred cCCCCCCCEEeccCC--CCC-ccCcccCCCCCCCEEECCCCCCcccc--hhhhCCCCCCEEeeccCCCCcc------cCC
Q 041079 690 SDGLHSLKSLCLHNC--GVT-RLPESLGRLSLLEELDLRRNNFERVP--ESIIQLSKLNYLYLSYCQRLQS------LPE 758 (945)
Q Consensus 690 l~~l~~L~~L~L~~~--~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~~------lp~ 758 (945)
+..+++|+.|.++.| +.. .++.....+++|++|+|++|++..+. ..+..+.+|..|++.+|.-.+. +-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 345778888888888 433 45555556689999999999776322 2456778888888888875541 112
Q ss_pred cccccceEeeccCc
Q 041079 759 LPCNLILLYADHCT 772 (945)
Q Consensus 759 l~~~L~~L~~~~c~ 772 (945)
+.++|++|+-..+.
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 45667666654443
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.025 Score=62.39 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=95.3
Q ss_pred HHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------------------ccceEEEEechhhhhcc
Q 041079 147 RVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------------------FEGSCFLENVREESQRS 202 (945)
Q Consensus 147 ~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~ 202 (945)
..+++.+.+.. .....+.|+.|+||+|+|.+++..+-.. .+...++..... ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~ 87 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSS 87 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--ccc
Confidence 34555555554 5678899999999999999999865221 122222211000 000
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
-++.. ...+.+.+ .+++=++|+|+++.. +....|+..+....+++.+|.+|.+.+
T Consensus 88 I~idq------------------iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 88 LGVDA------------------VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred CCHHH------------------HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 11111 22222222 255668899998764 346666666655567787777777643
Q ss_pred -ccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 276 -VLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 276 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
++... .-.+.+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|...
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHH
Confidence 44332 234578999999999998876532 1 11 233667899999999643
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.77 E-value=0.034 Score=63.26 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|.++|.+|+||||.|..++..+..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999999887654
No 224
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.76 E-value=0.0068 Score=75.45 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLA 206 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~ 206 (945)
...++|.+..++.|...+.. ...+.++|++|+|||++|+.+++.+...-...+.+. +.+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~----- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK----- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh-----
Confidence 45689999998888877653 146889999999999999999987644333333332 2222111
Q ss_pred HHHHHHHHHHhCCCCccC---CHHHHHHHHcC-CCcEEEEecCCC--hHHHHHHhcC
Q 041079 207 CLRQELLSKLLKHENVIL---DIDLNFRRLSR-MKVLIVFDDVTC--FRQIKSLIRS 257 (945)
Q Consensus 207 ~l~~~ll~~l~~~~~~~~---~~~~l~~~L~~-kr~LlVLDdv~~--~~~l~~l~~~ 257 (945)
.....+.+...... ....+.+.++. ..-+|+||+++. .+.+..++..
T Consensus 641 ----~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~i 693 (857)
T PRK10865 641 ----HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV 693 (857)
T ss_pred ----hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHH
Confidence 11222322221111 12233444433 336999999974 3445555443
No 225
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0077 Score=71.84 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLA 206 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~ 206 (945)
...++|.+..++.+.+.+.. .......|+.|||||-||++++..+...=+..+-+ ++++..+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~Ek----- 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEK----- 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHH-----
Confidence 35689999999998887754 34666799999999999999999875433333333 33333332
Q ss_pred HHHHHHHHHHhCCCCcc---CCHHHHHHHHcCCCc-EEEEecCCC--hHHHHHHhcCCC
Q 041079 207 CLRQELLSKLLKHENVI---LDIDLNFRRLSRMKV-LIVFDDVTC--FRQIKSLIRSPD 259 (945)
Q Consensus 207 ~l~~~ll~~l~~~~~~~---~~~~~l~~~L~~kr~-LlVLDdv~~--~~~l~~l~~~~~ 259 (945)
.-.+.+.+..+.. ..-..+-+..++++| +|.||.|+. ++.+.-|++-++
T Consensus 564 ----HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 564 ----HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ----HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 3344444444422 224566677788887 777999965 445666665554
No 226
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0029 Score=62.09 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=26.5
Q ss_pred ccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccC-CccccEEeccccc
Q 041079 548 ELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGC-LSGLVLLHLQACK 604 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~-L~~L~~L~L~~~~ 604 (945)
....+||++|. +..++.+..++.|.+|.|++|.|+.+.+.+.. +++|..|.|.+|+
T Consensus 43 ~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 33444555543 33444444555555555555555554443332 2345555554443
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.0062 Score=66.77 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
...+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578999999999999999999998766544566654
No 228
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.62 E-value=0.0069 Score=75.13 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 139 NQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..++|.+..++.+.+.+.. ..++.++|++|+|||.+|++++..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5689999999988877632 2368899999999999999999877543
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0019 Score=60.09 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.017 Score=61.19 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=93.0
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc-cCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR-SGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~~l~~l~ 209 (945)
+...++|-.++-.++..++.. ..-|.|+|+.|.|||+|......+ .+.|.-...+......... .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 345789999999999998876 678899999999999998766655 2333333333222111110 01233344
Q ss_pred HHHHHHHhCCCCccC----CHHHHHHHHcC------CCcEEEEecCCChHH------HHHHhcCC-CCCCCCCeEEEEec
Q 041079 210 QELLSKLLKHENVIL----DIDLNFRRLSR------MKVLIVFDDVTCFRQ------IKSLIRSP-DWFMADSRIIITTR 272 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~----~~~~l~~~L~~------kr~LlVLDdv~~~~~------l~~l~~~~-~~~~~gs~IIiTTR 272 (945)
.++..++........ +...+-..|+. -++++|+|.+|...+ +-.+.... ....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444433332222111 24555555532 368999998865332 22332211 12346677789999
Q ss_pred Ccc-------ccccCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 273 NKQ-------VLRNCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 273 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
-.- |-....-..++-++.++-++-.+++....
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 542 22222222356666677677666665543
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.011 Score=62.40 Aligned_cols=76 Identities=22% Similarity=0.179 Sum_probs=46.1
Q ss_pred cccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcC
Q 041079 156 GAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSR 235 (945)
Q Consensus 156 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 235 (945)
....-+.++|.+|+|||.||.++.+++...--.+.|+. ..++..++...... ......+.+.+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~----~~~~~~l~~~l~- 166 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDE----GRLEEKLLRELK- 166 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhc----CchHHHHHHHhh-
Confidence 34778999999999999999999999883333444443 23344444333322 001223333333
Q ss_pred CCcEEEEecCCC
Q 041079 236 MKVLIVFDDVTC 247 (945)
Q Consensus 236 kr~LlVLDdv~~ 247 (945)
+-=||||||+..
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 344889999843
No 232
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.57 E-value=0.03 Score=67.68 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=72.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRLSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~k 236 (945)
.+-|.|+|++|.|||++|+.++.+....|- .+. ..+ +.... .+.. ... ...+.......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~----------~~~~~----~g~~--~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSD----------FVEMF----VGVG--ASRVRDMFEQAKKAA 244 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHH----------hHHhh----hccc--HHHHHHHHHHHHhcC
Confidence 345899999999999999999987654431 111 100 00000 0000 000 11122223356
Q ss_pred CcEEEEecCCChH----------------HHHHHhcCCCCCC--CCCeEEEEecCcccccc-----CCcceEEEcCCCCH
Q 041079 237 KVLIVFDDVTCFR----------------QIKSLIRSPDWFM--ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRD 293 (945)
Q Consensus 237 r~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~ 293 (945)
+.+|++|++|... .+..++...+.+. .+.-+|.||...+.+.. -..+..+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 7899999986541 2334443333322 23345557766543321 12457888999999
Q ss_pred HHHHHHHHHhhhc
Q 041079 294 DHALELFSRHAFK 306 (945)
Q Consensus 294 ~ea~~Lf~~~af~ 306 (945)
++-.+++..+.-+
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887643
No 233
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.57 E-value=0.0068 Score=61.78 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=62.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEE-EechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCC
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL-ENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRLSRM 236 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~k 236 (945)
.+|.|.|+.|.||||++..+...+.......++. .+-.+.. . ... ..+..+... ...... .+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~-~~~----~~~i~q~~v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-H-ESK----RSLINQREV-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-c-cCc----cceeeeccc-CCCccCHHHHHHHHhcCC
Confidence 4789999999999999999988776554444443 2111100 0 000 011110000 001112 56677778777
Q ss_pred CcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 237 KVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 237 r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
+=.|++|.+.+.+.+....... ..|-.++.|+-...
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 8899999998888766555432 24555666665543
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0023 Score=69.81 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 139 NQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
++++|.++.++++.+++.. .++++++|++|.||||||+++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3799999999999888855 57899999999999999999998664
No 235
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.56 E-value=0.009 Score=61.82 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.-.++|+|..|.|||||++.+.......|+.+..+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 346889999999999999999999999997666554
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.55 E-value=0.049 Score=55.58 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=97.6
Q ss_pred CCCCccchHHHHHH---HHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCH
Q 041079 137 NNNQLVGVESRVVA---IQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGL 205 (945)
Q Consensus 137 ~~~~~vGr~~~l~~---l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l 205 (945)
..++.||.+....+ |.+.|.. .+-|..+|++|.|||.+|+++++..+.-| +. + ..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-v--------ka 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-V--------KA 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-e--------ch
Confidence 44678998866543 4566655 78999999999999999999999764332 11 0 00
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHH-HcCCCcEEEEecCCC--------------hHHHHHHhcCCCCC--CCCCeEE
Q 041079 206 ACLRQELLSKLLKHENVILDIDLNFRR-LSRMKVLIVFDDVTC--------------FRQIKSLIRSPDWF--MADSRII 268 (945)
Q Consensus 206 ~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~--------------~~~l~~l~~~~~~~--~~gs~II 268 (945)
. +++.+..+.. ...+..+-++ -+.-++++.+|.+|- .+.+.+|+..++.. +.|-..|
T Consensus 185 t----~liGehVGdg--ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 185 T----ELIGEHVGDG--ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred H----HHHHHHhhhH--HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1 1111111100 0001112222 235689999998753 23366677666533 3455556
Q ss_pred EEecCccccccC---CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 269 ITTRNKQVLRNC---SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 269 iTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
-.|....++... .....++...-+++|-.+++..++-+-.-+-.. -.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 666655544321 233467777888999999999888433322221 134566666664
No 237
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00033 Score=82.39 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=16.2
Q ss_pred CcCccccccccccCCCC--CccccccCcceeEEEecC
Q 041079 496 MPKLRFLKFYRSSINGE--NKCKQQHHGKLKQIIISA 530 (945)
Q Consensus 496 ~~~Lr~L~l~~~~l~~~--~~~~~~~l~~L~~L~Ls~ 530 (945)
+++|+.|.+.+..--.. .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555555554321111 222334555566666554
No 238
>PRK07261 topology modulation protein; Provisional
Probab=96.50 E-value=0.011 Score=58.78 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.015 Score=56.95 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999999999999999998766545566654
No 240
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.028 Score=66.73 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=104.1
Q ss_pred CCCCccchHHHHHHHHh---hhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQS---LLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~---~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..+++.|.|+..++|.+ .|.. ++=|.++|++|.|||-||++++-+-. +=|+.....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS----- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS----- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH-----
Confidence 44678998876666655 4443 67899999999999999999998642 223321111
Q ss_pred CCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCCh-----------------HHHHHHhcCCCCCCCC
Q 041079 203 GGLACLRQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCF-----------------RQIKSLIRSPDWFMAD 264 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~~~~g 264 (945)
+++....+.. ... .+.....-...+.+|.+|++|.. ..+..|+...+.+..+
T Consensus 379 --------EFvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 --------EFVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred --------HHHHHhcccc--hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1111111110 000 11112222356778888887431 1267777777766655
Q ss_pred CeEEE--EecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 265 SRIII--TTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 265 s~IIi--TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
..||+ +|+..+++.. -..+..+.++.-+.....++|.-|+-+.... .+..+++. ++...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 54443 5554444332 1346678899999999999999988544333 34456666 88888888755
No 241
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.45 E-value=0.0069 Score=61.22 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=58.8
Q ss_pred HHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHh--hccccceEEEEechhhhhcc-CCHHHHHH-------HHHHHHhC
Q 041079 149 VAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKI--SSDFEGSCFLENVREESQRS-GGLACLRQ-------ELLSKLLK 218 (945)
Q Consensus 149 ~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~s~~~-~~l~~l~~-------~ll~~l~~ 218 (945)
+...+.|....+|.+.|++|.|||.||.+.+-+. ...|+..++....-+..+.. +-...+.+ -+...+.
T Consensus 10 ~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~- 88 (205)
T PF02562_consen 10 KFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALE- 88 (205)
T ss_dssp HHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHT-
T ss_pred HHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHH-
Confidence 3334444468899999999999999999888542 46788777765443221110 00011111 1111111
Q ss_pred CCCccCCHHHHHH----------HHcCC---CcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 219 HENVILDIDLNFR----------RLSRM---KVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 219 ~~~~~~~~~~l~~----------~L~~k---r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
.-......+.+.+ .++++ ..+||+|++.+ .+++..++... +.|||||++=-..
T Consensus 89 ~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 89 ELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp TTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 1001111222221 23443 46999999965 45788888765 6899999986543
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0032 Score=59.48 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFL 192 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 192 (945)
.-|+|.||+|+||||+++.+++.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 358999999999999999999988776 6654443
No 243
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.42 E-value=0.012 Score=73.44 Aligned_cols=112 Identities=15% Similarity=0.209 Sum_probs=65.0
Q ss_pred CCCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLA 206 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~ 206 (945)
...++|-+..++.+...+.. ...+.++|+.|+|||+||+.+++.+...-...+.+ +..+.... ....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHH
Confidence 35689999999999877753 22467899999999999999999764432333332 22222211 1221
Q ss_pred HHHHHHHHHHhCCCC---ccCCHHHHHHHHcCCC-cEEEEecCCCh--HHHHHHhcCCC
Q 041079 207 CLRQELLSKLLKHEN---VILDIDLNFRRLSRMK-VLIVFDDVTCF--RQIKSLIRSPD 259 (945)
Q Consensus 207 ~l~~~ll~~l~~~~~---~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~l~~l~~~~~ 259 (945)
. +.+... .......+.+.++.++ -+++||+++.. +.+..|+..+.
T Consensus 586 ~--------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 586 K--------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred H--------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 111111 1111334555665555 58889999754 33555554443
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.23 Score=54.73 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecC-ccccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 041079 235 RMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRN-KQVLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHP 310 (945)
Q Consensus 235 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 310 (945)
+++-++|+|+++.. .....|+..+....+++.+|++|.+ ..++... .-.+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34558889999764 4466777666655678877766655 4444332 234689999999999999887642 1
Q ss_pred CccHHHHHHHHHHHhcCCcchHHHh
Q 041079 311 DVGYEELSSRVIQYAQGVPLALEIL 335 (945)
Q Consensus 311 ~~~~~~l~~~i~~~~~GlPLal~~l 335 (945)
++ ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999744433
No 245
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.033 Score=64.03 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=107.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc----ccc--ceEEEEechhhhhccCCHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS----DFE--GSCFLENVREESQRSGGLAC 207 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~----~F~--~~~~~~~~~~~s~~~~~l~~ 207 (945)
..+++||-+.....|...+.. ...-...|+-|+||||+||.++.-+-. ..+ ..|..+ .+.. . ....+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~-~-g~~~D 89 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEIN-E-GSLID 89 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhh-c-CCccc
Confidence 456789999999999999887 445568999999999999999985421 111 112111 0000 0 00000
Q ss_pred HHHHHHHHHhCCC-CccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-ccc
Q 041079 208 LRQELLSKLLKHE-NVILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLR 278 (945)
Q Consensus 208 l~~~ll~~l~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~ 278 (945)
+. ++.... ...++...+.+.. .++.=+.|+|.|.-. ..+.+|+..+....+.-..|+.|++.+ +..
T Consensus 90 vi-----EiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 90 VI-----EIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ch-----hhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 00 000000 1122244444444 345558889999654 458888887766556777777777654 222
Q ss_pred c-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 279 N-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 279 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
. ..-.+.|..+.++.++-...+...+-+..-.. ..+...-|++..+|-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs 213 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGS 213 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCC
Confidence 1 23346899999999988888877663322221 234555666666663
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.39 E-value=0.026 Score=61.46 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=56.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+. ...+..++-...... ......+.+. +-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-----~~~~~l~~l~-~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-----SVKEKIDAVK-EA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-----cHHHHHHHhc-CC
Confidence 457899999999999999999998865544455553 123333333332211 1223333343 45
Q ss_pred cEEEEecCCCh--HHHH--HHhcCC-CC-CCCCCeEEEEecC
Q 041079 238 VLIVFDDVTCF--RQIK--SLIRSP-DW-FMADSRIIITTRN 273 (945)
Q Consensus 238 ~LlVLDdv~~~--~~l~--~l~~~~-~~-~~~gs~IIiTTR~ 273 (945)
=||||||+... ..|. .++... .. ...+-.+|+||--
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 68999998432 2222 232221 11 1245568888863
No 247
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.37 E-value=0.017 Score=57.60 Aligned_cols=36 Identities=28% Similarity=0.615 Sum_probs=32.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+|.+.|++|.||||+|+.+++++...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 568999999999999999999999988888777774
No 248
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.35 E-value=0.089 Score=61.41 Aligned_cols=126 Identities=12% Similarity=0.203 Sum_probs=68.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccc---------eEEEEechhhhhccCCH------------HHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEG---------SCFLENVREESQRSGGL------------ACLRQELLSKL 216 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~---------~~~~~~~~~~s~~~~~l------------~~l~~~ll~~l 216 (945)
...|+|+|+.|+|||||.+.+....... .+ ..|+..-.........+ ..-.+..+..+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 6789999999999999999997654332 11 12222111000000001 12222223222
Q ss_pred hCCCCcc-------CC----HHHHHHHHcCCCcEEEEecC------CChHHHHHHhcCCCCCCCCCeEEEEecCcccccc
Q 041079 217 LKHENVI-------LD----IDLNFRRLSRMKVLIVFDDV------TCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRN 279 (945)
Q Consensus 217 ~~~~~~~-------~~----~~~l~~~L~~kr~LlVLDdv------~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 279 (945)
+-..+.. +. .-.+...+-.+.=+||||.- +..++++..+..+ +| .||+.|-|+..+..
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHh
Confidence 2221111 00 22333444568889999975 3344566555554 35 48888899888777
Q ss_pred CCcceEEEcCC
Q 041079 280 CSVKEIYEMKE 290 (945)
Q Consensus 280 ~~~~~~~~l~~ 290 (945)
. +.+++.+++
T Consensus 502 v-a~~i~~~~~ 511 (530)
T COG0488 502 V-ATRIWLVED 511 (530)
T ss_pred h-cceEEEEcC
Confidence 6 356777664
No 249
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.09 Score=53.47 Aligned_cols=162 Identities=20% Similarity=0.334 Sum_probs=94.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
...++=|.+..++++.+.+-- .+-|..+|++|.|||-+|++.+.+-...|-.-
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------ 236 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------ 236 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh------------
Confidence 445677788888888776532 56788999999999999999988765444211
Q ss_pred cCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH----cCCCcEEEEecCCC-------------hH-H--HHHHhcCCCCC
Q 041079 202 SGGLACLRQELLSKLLKHENVILDIDLNFRRL----SRMKVLIVFDDVTC-------------FR-Q--IKSLIRSPDWF 261 (945)
Q Consensus 202 ~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~-------------~~-~--l~~l~~~~~~~ 261 (945)
.+. ++.....+. ....+++.+ ...+.+|.+|.++. .+ | .-+|+..++.|
T Consensus 237 -AgP-----QLVQMfIGd-----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 237 -AGP-----QLVQMFIGD-----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred -cch-----HHHhhhhcc-----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 010 111111111 122223322 24678888998742 11 1 33455566656
Q ss_pred CCCC--eEEEEecCcccc-----ccCCcceEEEcCCCCHHHHHHHHHHhhhc-CCCCCccHHHHHHHH
Q 041079 262 MADS--RIIITTRNKQVL-----RNCSVKEIYEMKELRDDHALELFSRHAFK-QNHPDVGYEELSSRV 321 (945)
Q Consensus 262 ~~gs--~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~-~~~~~~~~~~l~~~i 321 (945)
.+.- +||..|..-+++ ..-..+..++.+.-+++.-.+++.-+.-+ ...++-+++++++.-
T Consensus 306 ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 306 SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred CCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 5544 566655544432 23335567787777777766777666543 335667788877654
No 250
>PRK04296 thymidine kinase; Provisional
Probab=96.28 E-value=0.0072 Score=61.15 Aligned_cols=109 Identities=13% Similarity=0.040 Sum_probs=60.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCc--cCCHHHHHHHH---
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENV--ILDIDLNFRRL--- 233 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~--~~~~~~l~~~L--- 233 (945)
.++.|+|..|.||||+|..++.+...+-..++++... ...+ .+.. .+.+.+...... ......+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~-~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDR-YGEG----KVVSRIGLSREAIPVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccc-ccCC----cEecCCCCcccceEeCChHHHHHHHHhh
Confidence 4678999999999999999999876554444444210 0001 1111 122222111110 11222222222
Q ss_pred cCCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEecCccc
Q 041079 234 SRMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITTRNKQV 276 (945)
Q Consensus 234 ~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 276 (945)
.++.-+||+|.+.- .+++.++...+. ..|..||+|.++.+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 23556999999854 344555554422 368899999998643
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.22 E-value=0.016 Score=70.59 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 139 NQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..++|.+..++.|...+.. ...+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999988887652 34688999999999999999998774
No 252
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.0023 Score=65.43 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=15.8
Q ss_pred CccccEEecccc--ccccccCcccCCCCCCCEEeccCCC
Q 041079 592 LSGLVLLHLQAC--KMLKSLPCSLFKLKSLEDLNLCRCS 628 (945)
Q Consensus 592 L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~Ls~~~ 628 (945)
|++|+.|.++.| .....++....++++|++|++++|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 444444444444 2223333333334455555554443
No 253
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.015 Score=64.95 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=75.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH-HHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE-LLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~-ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
...+.+.|++|+|||+||..++.. ..|+.+-.+. .... -++..-.+- -+ ...+.+.-+..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe~m--iG~sEsaKc~~i------------~k~F~DAYkS~ 598 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PEDM--IGLSESAKCAHI------------KKIFEDAYKSP 598 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hHHc--cCccHHHHHHHH------------HHHHHHhhcCc
Confidence 456788999999999999999874 5788655442 1110 111111110 00 12233444566
Q ss_pred CcEEEEecCCChHH------------HHHHhcCCCCC-CCCCe--EEEEecCccccccCCc----ceEEEcCCCCH-HHH
Q 041079 237 KVLIVFDDVTCFRQ------------IKSLIRSPDWF-MADSR--IIITTRNKQVLRNCSV----KEIYEMKELRD-DHA 296 (945)
Q Consensus 237 r~LlVLDdv~~~~~------------l~~l~~~~~~~-~~gs~--IIiTTR~~~v~~~~~~----~~~~~l~~L~~-~ea 296 (945)
--.||+||+...-+ +++|.-.+... ..|-| |+-||....++..|+. ...+.|+.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 77999999855332 33333222211 23444 4457777888888763 45789999987 778
Q ss_pred HHHHHHh
Q 041079 297 LELFSRH 303 (945)
Q Consensus 297 ~~Lf~~~ 303 (945)
.+.++..
T Consensus 679 ~~vl~~~ 685 (744)
T KOG0741|consen 679 LEVLEEL 685 (744)
T ss_pred HHHHHHc
Confidence 8777654
No 254
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.18 E-value=0.13 Score=58.54 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45899999999999999999998765
No 255
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.17 E-value=0.12 Score=58.52 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999998776543334444
No 256
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.089 Score=61.98 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc-c
Q 041079 139 NQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR-S 202 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~ 202 (945)
....|.+...+.+.+.... .+.+.++|++|.|||.||+++++.....|-.+..- +.... .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcccc
Confidence 4455666655555544322 45789999999999999999999765555322110 00000 0
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCCCCCCCC--eE
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPDWFMADS--RI 267 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~gs--~I 267 (945)
....+.. ...+....+..+..|.+|.++.. .....++...+.....+ .|
T Consensus 318 Gesek~i----------------r~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 318 GESEKNI----------------RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred chHHHHH----------------HHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 0111111 12223333578899999998532 22444444443223333 34
Q ss_pred EEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhc
Q 041079 268 IITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFK 306 (945)
Q Consensus 268 IiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 306 (945)
|-||-....... -..+..+.++.-+.++..+.|..+.-+
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 445544433221 134678999999999999999998853
No 257
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.034 Score=61.55 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=80.4
Q ss_pred CccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccc---------------------cceEEEEe
Q 041079 140 QLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDF---------------------EGSCFLEN 194 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 194 (945)
.++|-+....++..+... ...+.++|++|+||||+|.++++.+.... +.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356667777777766653 34589999999999999999999875332 22333321
Q ss_pred chhhhhccCC---HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChHH--HHHHhcCCCCCCCCCeEEE
Q 041079 195 VREESQRSGG---LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFRQ--IKSLIRSPDWFMADSRIII 269 (945)
Q Consensus 195 ~~~~s~~~~~---l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IIi 269 (945)
+.. .. .....+++........ ..++.-++++|+++.... ..++...........++|+
T Consensus 82 ----s~~-~~~~i~~~~vr~~~~~~~~~~------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 ----SDL-RKIDIIVEQVRELAEFLSESP------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ----ccc-CCCcchHHHHHHHHHHhccCC------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 111 11 1222222222221110 135678999999987643 5555555555567888888
Q ss_pred EecCc-cccccC-CcceEEEcCCCCHHHH
Q 041079 270 TTRNK-QVLRNC-SVKEIYEMKELRDDHA 296 (945)
Q Consensus 270 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea 296 (945)
+|.+. .+.... .....+++.+.+..+.
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EcCChhhccchhhhcceeeecCCchHHHH
Confidence 88743 233322 2334677776443333
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.15 E-value=0.063 Score=51.98 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=59.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHH-----hCC-----CCccCC---
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKL-----LKH-----ENVILD--- 225 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l-----~~~-----~~~~~~--- 225 (945)
.+|-|++-.|.||||+|...+-+...+=-.+.++.-+... .. .+-....+.+ ..+ ... .+...+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WK-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-Cc-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678889999999999999988765553344443322221 01 1222222222 000 000 000000
Q ss_pred ----HHHHHHHHc-CCCcEEEEecCCC--------hHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 ----IDLNFRRLS-RMKVLIVFDDVTC--------FRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 ----~~~l~~~L~-~kr~LlVLDdv~~--------~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
....++.+. +.-=|+|||++.. .+++-.++... .++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCCC
Confidence 223334444 3456999999843 33444444443 36789999999864
No 259
>PRK04132 replication factor C small subunit; Provisional
Probab=96.14 E-value=0.056 Score=66.09 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=89.0
Q ss_pred cCCCcHHHHHHHHHHHhhc-cccc-eEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHc-CCCcEEEE
Q 041079 166 IGGIGKTIIARAIFDKISS-DFEG-SCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLS-RMKVLIVF 242 (945)
Q Consensus 166 ~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~-~kr~LlVL 242 (945)
+.++||||+|.++++++-. .+.. .+.+. . ++. .+...+.+ ++........ +. .+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN-A---Sd~-rgid~IR~-iIk~~a~~~~-----------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN-A---SDE-RGINVIRE-KVKEFARTKP-----------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe-C---CCc-ccHHHHHH-HHHHHHhcCC-----------cCCCCCEEEEE
Confidence 7889999999999998632 2322 23332 2 221 34444433 3232221110 11 24579999
Q ss_pred ecCCChH--HHHHHhcCCCCCCCCCeEEEEecCcc-cccc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHH
Q 041079 243 DDVTCFR--QIKSLIRSPDWFMADSRIIITTRNKQ-VLRN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELS 318 (945)
Q Consensus 243 Ddv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~ 318 (945)
|+++... +..+|+..........++|++|.+.. +... ......+++.+++.++-.+.+.+.+-..+..- ..+..
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L 714 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGL 714 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHH
Confidence 9998764 56666666555456778877766543 3222 12346899999999999888877653322111 14567
Q ss_pred HHHHHHhcCCcch
Q 041079 319 SRVIQYAQGVPLA 331 (945)
Q Consensus 319 ~~i~~~~~GlPLa 331 (945)
..|++.++|.+..
T Consensus 715 ~~Ia~~s~GDlR~ 727 (846)
T PRK04132 715 QAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHcCCCHHH
Confidence 8899999998743
No 260
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.058 Score=60.45 Aligned_cols=145 Identities=20% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCccchHH---HHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc--
Q 041079 139 NQLVGVES---RVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS-- 202 (945)
Q Consensus 139 ~~~vGr~~---~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~-- 202 (945)
++.-|.|+ ++++|.+.|.. .+-|.++|++|.|||-||++++-+-.-.| |.....+..+-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSEFDEMFVG 379 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccchhhhhhc
Confidence 45667765 55666666765 67899999999999999999987543222 221111110000
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCCCCCCCCeEEE
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPDWFMADSRIII 269 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~gs~IIi 269 (945)
.+..++ .+.+...-..-+++|.+|.+|.. ..+..|+...+.|.++.-|||
T Consensus 380 vGArRV-----------------RdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 380 VGARRV-----------------RDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred ccHHHH-----------------HHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 111111 11112222356899999998542 126677777776666554444
Q ss_pred --EecCccccc----cCC-cceEEEcCCCCHHHHHHHHHHhh
Q 041079 270 --TTRNKQVLR----NCS-VKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 270 --TTR~~~v~~----~~~-~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.|..++.+. ..| .+..+.|+.-+-.--.++|..+.
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 333222221 112 34456666666555566666555
No 261
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.079 Score=63.54 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc-ccc-----ceEEEEechhh----hhccCCH
Q 041079 138 NNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS-DFE-----GSCFLENVREE----SQRSGGL 205 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~-----~~~~~~~~~~~----s~~~~~l 205 (945)
.+.++||+.+++++.+.|.. ..--.++|-+|+|||++|.-++.++.. +-+ ..++--++... .-+ ...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR-GeF 247 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR-GEF 247 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccccc-CcH
Confidence 45689999999999999987 344557899999999999999987633 222 12222111110 000 112
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------HHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 206 ACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------RQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 206 ~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
+.-.+.++.++ -+.++++|++|.+... .+...++.+.-..|.--.|=.||-++.
T Consensus 248 EeRlk~vl~ev----------------~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 248 EERLKAVLKEV----------------EKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred HHHHHHHHHHH----------------hcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 22222222221 1245899999997432 222233322221222224445665442
Q ss_pred c---ccc---CCcceEEEcCCCCHHHHHHHHHHh
Q 041079 276 V---LRN---CSVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 276 v---~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
- .+. ..-.+.+.|...+.+++..++.-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 110 123468899999999999998754
No 262
>PHA00729 NTP-binding motif containing protein
Probab=96.10 E-value=0.017 Score=59.04 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|.|.+|+||||||.++++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 263
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.00039 Score=81.72 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=66.6
Q ss_pred cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC-CCCCCCC-----CccCCcccceEeecCCC-CcccC-ccc-
Q 041079 519 HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC-KGLKKLP-----EISSLSNIEKIILSGTA-IEELP-SSV- 589 (945)
Q Consensus 519 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~-~~l~~lp-----~~~~l~~L~~L~Ls~~~-i~~lp-~~i- 589 (945)
.++.|+.|.+..+..+...........++.|+.|++++| ......+ ....+++|+.|+++++. +++.- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467888888887776665433344566778888888873 3222222 12236778888888776 44221 111
Q ss_pred cCCccccEEeccccccccc--cCcccCCCCCCCEEeccCCCCC
Q 041079 590 GCLSGLVLLHLQACKMLKS--LPCSLFKLKSLEDLNLCRCSNL 630 (945)
Q Consensus 590 ~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~~ 630 (945)
..+++|+.|.+.+|..+.. +-.....+++|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2266788887777764221 2222345677888888877665
No 264
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.01 Score=61.82 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 144 VESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 144 r~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
|.+.+++|.+.+.. ..+|+|.|.+|.||||+|+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44444555444421 6699999999999999999999987543
No 265
>PRK10867 signal recognition particle protein; Provisional
Probab=95.98 E-value=0.16 Score=57.67 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|.++|.+|+||||.|..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5689999999999999999999877665
No 266
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.38 Score=53.15 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++++++|+.|+||||++..++.....+-..+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 679999999999999999999887654433455554
No 267
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.01 Score=62.29 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=28.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh----hccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI----SSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 193 (945)
.|+|.++|+||.|||+|.++++.++ .+.|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 6899999999999999999999965 34455554443
No 268
>PRK06762 hypothetical protein; Provisional
Probab=95.92 E-value=0.026 Score=55.78 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|.|.|++|+||||+|+.+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 269
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.085 Score=57.99 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=47.7
Q ss_pred CcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecCcc-ccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 041079 237 KVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRNKQ-VLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDV 312 (945)
Q Consensus 237 r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 312 (945)
+-++|+|+++..+ ....++..+.....+..+|++|.+.+ +.... .....+.+.+++.+++.+.+.... ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCc
Confidence 3344568876542 33333333322235677777777654 33221 224678999999999998886531 111
Q ss_pred cHHHHHHHHHHHhcCCcch
Q 041079 313 GYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 313 ~~~~l~~~i~~~~~GlPLa 331 (945)
. . ..+..++|-|+.
T Consensus 189 ~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P--E---ERLAFHSGAPLF 202 (325)
T ss_pred H--H---HHHHHhCCChhh
Confidence 1 1 123567898854
No 270
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.91 E-value=0.12 Score=60.15 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=85.2
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhh-----ccccceE--EEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKIS-----SDFEGSC--FLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~--~~~~~~~~s~~~ 202 (945)
....+-+|+.+..+|.+.+.. ...+-|.|.+|.|||+.+..|.+.+. .+-+... .+...+ .
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~-----l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR-----L 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee-----e
Confidence 456678999999999998876 45889999999999999999998653 1222222 332221 1
Q ss_pred CCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHc-----CCCcEEEEecCCChHH--HHHHhcCCCCC-CCCCeEEEEe
Q 041079 203 GGLACLRQELLSKLLKHENVILD-IDLNFRRLS-----RMKVLIVFDDVTCFRQ--IKSLIRSPDWF-MADSRIIITT 271 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~-----~kr~LlVLDdv~~~~~--l~~l~~~~~~~-~~gs~IIiTT 271 (945)
.+...+...|...+.++...... .+.+..+.. .+..++++|++|..-. -+-+-..++|. .++|+++|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 45677888888888766554332 556666654 4568888998865422 11222223443 4788877655
No 271
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.87 E-value=0.035 Score=59.39 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+++.++|++|+||||++..++..+...-..+.++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 578999999999999999999987765533444443
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.81 E-value=0.04 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 273
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.092 Score=53.17 Aligned_cols=148 Identities=19% Similarity=0.282 Sum_probs=81.2
Q ss_pred CCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccC
Q 041079 139 NQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSG 203 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 203 (945)
.++=|.|-..+++.+...- .+-|.++|++|.|||.||+++++.-...| +..++.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------ 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------ 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH------
Confidence 3456777777777665432 67899999999999999999999766554 322211
Q ss_pred CHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--------------H--HHHHhcCCCCCC--CCC
Q 041079 204 GLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--------------Q--IKSLIRSPDWFM--ADS 265 (945)
Q Consensus 204 ~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~~~~--~gs 265 (945)
++..+..++..... .+.++-.-.+-+-+|.+|.++... | +-+|+...+.|. .+.
T Consensus 224 -------efvqkylgegprmv-rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nv 295 (408)
T KOG0727|consen 224 -------EFVQKYLGEGPRMV-RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNV 295 (408)
T ss_pred -------HHHHHHhccCcHHH-HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccce
Confidence 12222222221100 111121223567889999985421 1 334554544443 345
Q ss_pred eEEEEecCccc-----cccCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 266 RIIITTRNKQV-----LRNCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 266 ~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
++|..|...+. +.--..+..++.+.-+..+-.-.|.....
T Consensus 296 kvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred EEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 77765543322 11112345667765555555555655443
No 274
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.79 E-value=0.0081 Score=56.27 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=20.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 275
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.78 E-value=0.014 Score=55.69 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=30.5
Q ss_pred cchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 142 VGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
||....++++.+.+.. ..-|.|+|-.|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4666666666665554 67889999999999999999988543
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.22 Score=55.81 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 277
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.011 Score=68.43 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=42.3
Q ss_pred CCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 139 NQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
++-+|+++-.++|.+.+.- ..++..+|++|||||.+|+.++.-+.+.|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4578999999999888754 789999999999999999999998876663
No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.72 E-value=0.033 Score=58.12 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN 194 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 194 (945)
..++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6799999999999999999999877666677888863
No 279
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.72 E-value=0.027 Score=60.12 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCcc
Q 041079 145 ESRVVAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVI 223 (945)
Q Consensus 145 ~~~l~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~ 223 (945)
+..++.+..++.. ..+|.|.|..|.||||+++++.+.+...-..++.+.+..+... .+. .++.-.....
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~~ 135 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKAG 135 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcCC
Confidence 3445556666655 6789999999999999999998876542223444443222110 110 0000011111
Q ss_pred CC-HHHHHHHHcCCCcEEEEecCCChHHHHHHhcC
Q 041079 224 LD-IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRS 257 (945)
Q Consensus 224 ~~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~ 257 (945)
.+ .+.++..|+..+=.|+++++.+.+....++..
T Consensus 136 ~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 136 LTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 12 67778888888999999999998876654433
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.13 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|.++|..|+||||.+..++.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.68 E-value=0.015 Score=56.00 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=30.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+|-|.|.+|.||||||+++..++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 47889999999999999999999988877777764
No 282
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.27 Score=49.86 Aligned_cols=142 Identities=18% Similarity=0.377 Sum_probs=83.8
Q ss_pred Cccc-hHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccC
Q 041079 140 QLVG-VESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSG 203 (945)
Q Consensus 140 ~~vG-r~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 203 (945)
.+|| .+..+++|.+.+.- ..-|.++|++|.|||-||+++++.- .||+..+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvs------- 213 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVS------- 213 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEec-------
Confidence 3554 57777777776543 5678899999999999999999853 23333331
Q ss_pred CHHHHHHHHHHHHhCCCCccCCHHHHHHHH----cCCCcEEEEecCCCh-------------H-H--HHHHhcCCCCC--
Q 041079 204 GLACLRQELLSKLLKHENVILDIDLNFRRL----SRMKVLIVFDDVTCF-------------R-Q--IKSLIRSPDWF-- 261 (945)
Q Consensus 204 ~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~-------------~-~--l~~l~~~~~~~-- 261 (945)
+.+-+| ..+ ++. ..++++.+ .+-+-+|..|.+|+. + | .-+++..++.|
T Consensus 214 gselvq-k~i----geg-----srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 214 GSELVQ-KYI----GEG-----SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred hHHHHH-HHh----hhh-----HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 112122 221 111 12222221 356788888988541 1 1 22344455444
Q ss_pred CCCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 262 MADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.++-+||..|..-+++.. -..+..++.++-+++.-.+++.-+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 245677776664444332 2355678888888888888876554
No 283
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.67 E-value=0.017 Score=65.54 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 138 NNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.+.++||++.++.+...+.....|.|.|++|+|||++|+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 45689999999999988888889999999999999999999986543
No 284
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.14 Score=53.74 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=64.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...++|||++|-|||-+|++|+..+.-+|-.+. ...-++.......++.++... ..-...+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~---ss~lv~kyiGEsaRlIRemf~----------------yA~~~~p 226 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV---SSALVDKYIGESARLIRDMFR----------------YAREVIP 226 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEee---HhhhhhhhcccHHHHHHHHHH----------------HHhhhCc
Confidence 568999999999999999999998765553211 000011111222233332222 1223456
Q ss_pred cEEEEecCCC-------------hHH---HHHHhcCCCCCC--CCCeEEEEecCccccccC-----CcceEEEcCCCCH
Q 041079 238 VLIVFDDVTC-------------FRQ---IKSLIRSPDWFM--ADSRIIITTRNKQVLRNC-----SVKEIYEMKELRD 293 (945)
Q Consensus 238 ~LlVLDdv~~-------------~~~---l~~l~~~~~~~~--~gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~ 293 (945)
+.|.+|++|. .+. +-+|+...+.+. ...++|+||.+.+.+... ..+.-|+.+..++
T Consensus 227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcch
Confidence 9999999853 111 334444443222 456889999887654321 2334566653333
No 285
>PRK05973 replicative DNA helicase; Provisional
Probab=95.62 E-value=0.065 Score=55.68 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=31.8
Q ss_pred HHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 151 IQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 151 l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
+..-+....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3333344789999999999999999999876654545566664
No 286
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.61 E-value=0.051 Score=60.46 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred HHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE-echhhhhccCCHHHHHHHHHHHHhCCCCccCC-H
Q 041079 150 AIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE-NVREESQRSGGLACLRQELLSKLLKHENVILD-I 226 (945)
Q Consensus 150 ~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~ 226 (945)
.+.+++.. ...|.|.|+.|.||||+.+.+.+.+.......++.. +-.+... ... ..+..+.. ......+ .
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--~~~----~~~i~q~e-vg~~~~~~~ 185 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--RNK----RSLINQRE-VGLDTLSFA 185 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--cCc----cceEEccc-cCCCCcCHH
Confidence 34444433 679999999999999999999987765555544432 1111000 000 00000000 0001112 5
Q ss_pred HHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEec
Q 041079 227 DLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTR 272 (945)
Q Consensus 227 ~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR 272 (945)
..++..|+..+=.|++|.+.+.+......... ..|-.++.|.-
T Consensus 186 ~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred HHHHHhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEc
Confidence 66788888999999999999888766544332 24544444443
No 287
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.61 E-value=0.055 Score=56.14 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=34.5
Q ss_pred HHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 149 VAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 149 ~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..|..+|.. ..++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345555543 778999999999999999999987765555667775
No 288
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.60 E-value=0.091 Score=51.29 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecC
Q 041079 10 SLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDP 62 (945)
Q Consensus 10 ~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~p 62 (945)
++.+|++++.+.+.|..-....+.. -.++.+.+... ..+..++-|+=++|-
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl 51 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDL 51 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhc
Confidence 3678999999999999865543221 24555555432 223456777666664
No 289
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.59 E-value=0.066 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 290
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.25 Score=56.52 Aligned_cols=150 Identities=19% Similarity=0.336 Sum_probs=87.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHH-HcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRR-LSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~k 236 (945)
..-|.+||++|.|||-||++|+++-..+|- . + .+. +++....++.. .....+.++ -..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s-V-------KGP-----ELlNkYVGESE--rAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S-V-------KGP-----ELLNKYVGESE--RAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e-e-------cCH-----HHHHHHhhhHH--HHHHHHHHHhhcCC
Confidence 456889999999999999999998776653 2 1 111 12222211110 001222222 2357
Q ss_pred CcEEEEecCCCh-------------HHHHHHhcCCCCC--CCCCeEEEEecCccccc-----cCCcceEEEcCCCCHHHH
Q 041079 237 KVLIVFDDVTCF-------------RQIKSLIRSPDWF--MADSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHA 296 (945)
Q Consensus 237 r~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea 296 (945)
++.|.||.+|.. ..+..|+..++.. ..|--||-.|...++.. --..+.+.-|..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999998542 1255566555432 24556666665554422 113567888999999999
Q ss_pred HHHHHHhhhcCC---CCCccHHHHHHHHHHHhcCCc
Q 041079 297 LELFSRHAFKQN---HPDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 297 ~~Lf~~~af~~~---~~~~~~~~l~~~i~~~~~GlP 329 (945)
.+++....-... ..+-++.++++. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999988774211 123455555543 3445543
No 291
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.58 E-value=0.0074 Score=55.48 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccccce
Q 041079 161 LGIWGIGGIGKTIIARAIFDKISSDFEGS 189 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 189 (945)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988888653
No 292
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.57 E-value=0.04 Score=55.27 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=65.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHH------HHHHHHHHhCCC-----CccCC-
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACL------RQELLSKLLKHE-----NVILD- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l------~~~ll~~l~~~~-----~~~~~- 225 (945)
..+++|.|..|.|||||++.++.... ...+.+++... .... ...... ..+++..+.-.. ....+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 67999999999999999999987543 34555665321 1100 011111 111333322111 11111
Q ss_pred ----HHHHHHHHcCCCcEEEEecCCC---hH---HHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 226 ----IDLNFRRLSRMKVLIVFDDVTC---FR---QIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 226 ----~~~l~~~L~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
.-.+.+.+...+-++++|+... .+ .+..++..... ..|..||++|.+....... .++++.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3444556667888999999632 22 23333332211 1267888888876654332 2344443
No 293
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.57 E-value=0.012 Score=59.88 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+|+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988643
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=95.56 E-value=0.45 Score=52.37 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|+++|++|+||||++..++..+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999998876554
No 295
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.064 Score=54.70 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=38.3
Q ss_pred CccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEec
Q 041079 140 QLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENV 195 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 195 (945)
++=|-.++++++.+.... .+-|.++|++|.|||-+|++|+++- ..||+..+
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 455667778877765432 5678899999999999999999975 35666533
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.53 E-value=0.041 Score=52.88 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=58.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
..+++|.|..|.|||||++.+..... ...+.+++.......-- +.+..=+ ...-.+-+.+..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~-~~lS~G~--------------~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF-EQLSGGE--------------KMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE-ccCCHHH--------------HHHHHHHHHHhcCC
Confidence 67999999999999999999987543 23444554321111000 1000000 00223344556677
Q ss_pred cEEEEecCC---Ch---HHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 238 VLIVFDDVT---CF---RQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 238 ~LlVLDdv~---~~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
=++++|+.. +. ..+.+++... +..||++|.+...+... .++++.+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 889999963 22 2233333332 24688888776554332 2444444
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.53 E-value=0.076 Score=55.40 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=30.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc------cceEEEEe
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF------EGSCFLEN 194 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 194 (945)
..++.|+|.+|.|||+||..++......- ..++|+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 78999999999999999999987665444 56677763
No 298
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.52 E-value=0.057 Score=59.09 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+++++|++|+||||++..++..+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 5799999999999999999999887654
No 299
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.49 E-value=0.0085 Score=63.81 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+.|.|+|.||.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999877653
No 300
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.082 Score=57.16 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHH
Q 041079 112 RPESELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARA 177 (945)
Q Consensus 112 ~~e~~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~ 177 (945)
.+++.+++-.-++|.. ..|...=+++.|.++..+-|.+.... =+-|..+|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~----~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQ----RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhc----cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 3444444444444443 33333446788988887777665432 35788999999999999999
Q ss_pred HHHHhh
Q 041079 178 IFDKIS 183 (945)
Q Consensus 178 v~~~~~ 183 (945)
||.+-.
T Consensus 265 vATEc~ 270 (491)
T KOG0738|consen 265 VATECG 270 (491)
T ss_pred HHHhhc
Confidence 997643
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.45 E-value=0.18 Score=57.51 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=27.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh--ccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS--SDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 193 (945)
.+++.++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3334455554
No 302
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.40 E-value=0.056 Score=61.41 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=55.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC--------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD-------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~-------- 225 (945)
.+.++|.|.+|+|||||+..++.....+.+.++.+..+.+.. ..+..+.+++...-..... ...+
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 789999999999999999999887765545555555555443 3344555555432111110 0011
Q ss_pred ----HHHHHHHH---cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL---SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L---~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++++|+++|++-...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 22233444 6899999999985543
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.38 E-value=0.06 Score=53.16 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEech---hhhhccCCH--HHHHHHHHHHHhCCCCccCC----HHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVR---EESQRSGGL--ACLRQELLSKLLKHENVILD----IDL 228 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~---~~s~~~~~l--~~l~~~ll~~l~~~~~~~~~----~~~ 228 (945)
...++|.|..|.|||||++.++..... ..+.+++...+ -..+. ..+ ..+.+.+.-. .....+. .-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~-~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQR-PYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCC-CccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 679999999999999999999875432 22333332100 00111 111 1222222110 1111111 344
Q ss_pred HHHHHcCCCcEEEEecCCC---h---HHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcC
Q 041079 229 NFRRLSRMKVLIVFDDVTC---F---RQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMK 289 (945)
Q Consensus 229 l~~~L~~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (945)
+.+.+..++=++++|+-.. . ..+..++... +..||++|.+..... ..++++.++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 4555667788889998532 2 2233333332 357888888776543 245565553
No 304
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.075 Score=53.36 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=57.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc---cc-ceEEEEechh-hhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD---FE-GSCFLENVRE-ESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRL- 233 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~---F~-~~~~~~~~~~-~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L- 233 (945)
-..|.|++|+|||||.+.+++-++.. |. ..+-+.+-+. ...-..+........--++...... .+-+....
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk---~~gmmmaIr 215 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK---AEGMMMAIR 215 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH---HHHHHHHHH
Confidence 37899999999999999999865443 43 2232222211 1100011111111111111111110 11112222
Q ss_pred cCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecC
Q 041079 234 SRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRN 273 (945)
Q Consensus 234 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~ 273 (945)
...+=.+|.|.+...++..++..... .|.++|.|.--
T Consensus 216 sm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG 252 (308)
T COG3854 216 SMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHG 252 (308)
T ss_pred hcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecc
Confidence 34677999999999888777766653 68888777653
No 305
>PRK07667 uridine kinase; Provisional
Probab=95.37 E-value=0.025 Score=57.35 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|||.|.+|.||||+|+.+...+...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 5689999999999999999999987644
No 306
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.37 E-value=0.064 Score=53.30 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIF 179 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~ 179 (945)
..+++|+|..|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999999885
No 307
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.36 E-value=0.015 Score=66.80 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 139 NQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
++++|++..++++.+.|.. .+++.++|++|+||||||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4689999999999998832 789999999999999999999986543
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.24 Score=56.99 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred cchHHHHHHHHhhhc--------ccCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 142 VGVESRVVAIQSLLG--------AAPLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 142 vGr~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
-++...++.|.+.+. ...+|+|+|.+|+||||++..++.++..+
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344455555555332 26899999999999999999998876544
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.27 E-value=0.043 Score=57.09 Aligned_cols=120 Identities=22% Similarity=0.178 Sum_probs=69.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc-cCCHHHHHHHHHHHHhCCCC-------ccCC----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR-SGGLACLRQELLSKLLKHEN-------VILD---- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~~l~~l~~~ll~~l~~~~~-------~~~~---- 225 (945)
..++||+|-.|.||||+|+.+..-..... +.+++..- +.... .........+++..++.... +.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~-~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGK-DITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCc-chhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 78999999999999999999988655443 33343311 00000 02233344455555543222 1111
Q ss_pred HHHHHHHHcCCCcEEEEecCCC------hHHHHHHhcCCCCCCCCCeEEEEecCccccccC
Q 041079 226 IDLNFRRLSRMKVLIVFDDVTC------FRQIKSLIRSPDWFMADSRIIITTRNKQVLRNC 280 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 280 (945)
.-.+.+.|.-++-++|.|..-. ..|+-.|+..+.. ..|-..+..|-+-.++..+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 4556677888999999998532 2333444433321 2466677777776666554
No 310
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0012 Score=67.42 Aligned_cols=83 Identities=25% Similarity=0.228 Sum_probs=47.3
Q ss_pred cccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCc--ccCCCCCCCEEec
Q 041079 547 KELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPC--SLFKLKSLEDLNL 624 (945)
Q Consensus 547 ~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L 624 (945)
.+.+.|++.||. +..+.-..+|+.|++|.||-|.|+.|.+ +..+++|+.|.|+.|. +..+.. -+.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 344445666654 3334334456777777777777766643 6666777777777665 333321 2445666666666
Q ss_pred cCCCCCCc
Q 041079 625 CRCSNLRR 632 (945)
Q Consensus 625 s~~~~~~~ 632 (945)
..|.-.+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 66554443
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.034 Score=54.81 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=25.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccce
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGS 189 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 189 (945)
+.|.+.|.+|+||||+|++++..+++.-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4678999999999999999998776554433
No 312
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.23 E-value=0.084 Score=55.45 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=28.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc------ccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD------FEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 193 (945)
..++.|+|.+|.|||+||..++...... -..++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 7899999999999999999997543222 25777876
No 313
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.21 E-value=0.042 Score=63.96 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=46.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH--cC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRL--SR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L--~~ 235 (945)
.++..++|++|+||||||..++++- .|. ++=+ | .|+. .....+...|...+... ..+ .+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEI-N---ASDe-Rt~~~v~~kI~~avq~~-----------s~l~ads 386 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEI-N---ASDE-RTAPMVKEKIENAVQNH-----------SVLDADS 386 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc--Cce-EEEe-c---cccc-ccHHHHHHHHHHHHhhc-----------cccccCC
Confidence 6799999999999999999999863 222 1112 1 2333 44455555554443322 123 26
Q ss_pred CCcEEEEecCCChH
Q 041079 236 MKVLIVFDDVTCFR 249 (945)
Q Consensus 236 kr~LlVLDdv~~~~ 249 (945)
++.-||+|.+|...
T Consensus 387 rP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAP 400 (877)
T ss_pred CcceEEEecccCCc
Confidence 88899999998643
No 314
>PRK03839 putative kinase; Provisional
Probab=95.21 E-value=0.016 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 315
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.20 E-value=0.059 Score=55.25 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=49.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC-------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------- 225 (945)
.+.++|.|.+|+|||+|+..+.+...... .+++. +.+.. ..+..+.+++...-..+.. ...+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~--~V~~~-iGer~---~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDADV--VVYAL-IGERG---REVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTTE--EEEEE-ESECH---HHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccccc--eeeee-ccccc---hhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 77899999999999999999998764332 24443 32222 2344555554332111110 0111
Q ss_pred ----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++.+|+++||+....
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHHHH
Confidence 11112222 6899999999985443
No 316
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.18 E-value=0.087 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=22.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+|.++|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887544
No 317
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.18 E-value=0.031 Score=54.22 Aligned_cols=85 Identities=22% Similarity=0.329 Sum_probs=45.6
Q ss_pred EEecCCCcHHHHHHHHHHHhhccccceEEEE---echhhhhccCCHHHHHHHHHHHHhCCCCccCC---HHHHHHHHcC-
Q 041079 163 IWGIGGIGKTIIARAIFDKISSDFEGSCFLE---NVREESQRSGGLACLRQELLSKLLKHENVILD---IDLNFRRLSR- 235 (945)
Q Consensus 163 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~---~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~l~~~L~~- 235 (945)
|.|+||+||||+|+.++.++ .| ..+. .+++.... . ..+...+...+ .......+ ...++.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~---~~is~~~llr~~~~~-~--s~~g~~i~~~l-~~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GL---VHISVGDLLREEIKS-D--SELGKQIQEYL-DNGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TS---EEEEHHHHHHHHHHT-T--SHHHHHHHHHH-HTTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhc--Cc---ceechHHHHHHHHhh-h--hHHHHHHHHHH-HhhccchHHHHHHHHHHHHhhh
Confidence 68999999999999999975 23 2332 11222111 1 11222222222 22222222 5566666643
Q ss_pred -CCcEEEEecC-CChHHHHHHhc
Q 041079 236 -MKVLIVFDDV-TCFRQIKSLIR 256 (945)
Q Consensus 236 -kr~LlVLDdv-~~~~~l~~l~~ 256 (945)
..--+|||+. .+.+|.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 3567889998 44556655543
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.17 E-value=0.018 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|+|.|.+|.||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 319
>PRK00625 shikimate kinase; Provisional
Probab=95.15 E-value=0.016 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 320
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.35 Score=53.89 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=79.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
.|--.++|+||.|||++..++++.+ .|+ ++.-...++... .+ ++.++.. ...|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L--~yd--IydLeLt~v~~n----~d-Lr~LL~~------------------t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL--NYD--IYDLELTEVKLD----SD-LRHLLLA------------------TPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc--CCc--eEEeeeccccCc----HH-HHHHHHh------------------CCCC
Confidence 4566799999999999999999976 343 222222121111 11 1222111 2457
Q ss_pred cEEEEecCCChHH--------------------HHHHhcCCC--CCCC-CCeEEE-EecCccccc-----cCCcceEEEc
Q 041079 238 VLIVFDDVTCFRQ--------------------IKSLIRSPD--WFMA-DSRIII-TTRNKQVLR-----NCSVKEIYEM 288 (945)
Q Consensus 238 ~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gs~IIi-TTR~~~v~~-----~~~~~~~~~l 288 (945)
-+||+.|+|..-+ +.-|+..++ |... +-|||| ||-..+-+. .-..+-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7888888864311 222333322 3233 336654 776554322 1124456788
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 289 KELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 289 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
.-=+.+....||.++.... ++. .+..+|.+...|.-+.=..++
T Consensus 368 gyCtf~~fK~La~nYL~~~-~~h----~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIE-EDH----RLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred CCCCHHHHHHHHHHhcCCC-CCc----chhHHHHHHhhcCccCHHHHH
Confidence 8888888888888877332 222 345555555555443333333
No 321
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.13 E-value=0.086 Score=53.44 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=46.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC---ccCC-HHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN---VILD-IDLNFRRL 233 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~---~~~~-~~~l~~~L 233 (945)
+++|.++|+.|+||||.+.+++.+...+-..+.++..- ..+ .+...-++.+.+.+.-.-. ...+ .+.+++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D---~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD---TYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES---TSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC---CCC-ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 36899999999999999999998776663344454321 111 3334444555555543211 1122 33333333
Q ss_pred ---cC-CCcEEEEecC
Q 041079 234 ---SR-MKVLIVFDDV 245 (945)
Q Consensus 234 ---~~-kr~LlVLDdv 245 (945)
+. +.=+|++|=.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 22 3357888876
No 322
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.12 E-value=0.1 Score=58.34 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=34.5
Q ss_pred HHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 149 VAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 149 ~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++.+.|.. ..++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344455543 679999999999999999999987766555667764
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.12 E-value=0.087 Score=56.18 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceE
Q 041079 148 VVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSC 190 (945)
Q Consensus 148 l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 190 (945)
.++.+.++.. ..+|.|.|.+|.|||||+..+.+.+.......+
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 3445556655 889999999999999999999998876654333
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.11 E-value=0.13 Score=51.23 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
++.+.|++|.||||+++.++..+...=..++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 678999999999999999998876552233444
No 325
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.07 E-value=0.44 Score=54.84 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 141 LVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKIS-SDFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
..|...-...|.+++.. ..++.|-|.+|+|||++|..++.... .+-..++|+.. + .....+...++...
T Consensus 174 ~~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl------E-m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL------E-MSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------C-CCHHHHHHHHHHHH
Confidence 34555555555555544 67999999999999999999997654 33334555541 2 34556666666654
Q ss_pred h
Q 041079 217 L 217 (945)
Q Consensus 217 ~ 217 (945)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 326
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.07 E-value=0.11 Score=58.79 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=55.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC-------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------- 225 (945)
.+.++|.|.+|+|||||+..+......+...++.+..+.+.. ..+..+.+++...-..... ..+.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 788999999999999999999987765545555555565543 3344555555332111110 0011
Q ss_pred ----HHHHHHHH---cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL---SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L---~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++++|+++||+-...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 22233444 5789999999996544
No 327
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.07 E-value=0.25 Score=58.78 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=39.5
Q ss_pred CCCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+.++|....++++.+.+.. ...|.|+|..|.|||++|+.+++.-.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 456899999999988887765 55788999999999999999988543
No 328
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.0086 Score=36.88 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=12.3
Q ss_pred CCCEEECCCCCCcccchhhhC
Q 041079 718 LLEELDLRRNNFERVPESIIQ 738 (945)
Q Consensus 718 ~L~~L~Ls~n~l~~lp~~i~~ 738 (945)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 329
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.03 E-value=0.081 Score=60.36 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=53.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC--------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD-------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~-------- 225 (945)
.+.++|.|.+|+|||||+..+++....+...++.+..+.+.. ..+..+...+...-..... ...+
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 789999999999999999999987764444444444554433 2344444444432111111 0011
Q ss_pred ----HHHHHHHH---cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL---SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L---~~kr~LlVLDdv~~~~ 249 (945)
.-.+.+++ +++++|+++|++-...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 22233444 3799999999995543
No 330
>PRK04040 adenylate kinase; Provisional
Probab=95.03 E-value=0.022 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=23.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 331
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.03 E-value=0.17 Score=63.19 Aligned_cols=227 Identities=18% Similarity=0.160 Sum_probs=109.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc----cceEEEEe--chhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF----EGSCFLEN--VREESQRSGGLACLRQELLSKLLKHENVILDIDLNFR 231 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~--~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~ 231 (945)
..-+.|+|-+|.||||+...++-....+. +..+|+.. ........... .+..-+...+..............+
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~e 300 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQLIEAHQE 300 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcchhhHHHHH
Confidence 45789999999999999999886543322 22233321 11111110111 2333333333222222222333357
Q ss_pred HHcCCCcEEEEecCCChHH------HHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcCCCCHHHHHHHHH----
Q 041079 232 RLSRMKVLIVFDDVTCFRQ------IKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMKELRDDHALELFS---- 301 (945)
Q Consensus 232 ~L~~kr~LlVLDdv~~~~~------l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~---- 301 (945)
.+...++++++|.+|.... +..+-...++ -+.+.+|+|+|....-........+++..+.++.-.+...
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~ 379 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWL 379 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHH
Confidence 8899999999999877542 2222222222 3688999999976543333233455555555543332222
Q ss_pred ----HhhhcCCCCC-ccHH-HH---HHHHHHHhcCCcchHHHhhcccc------CCCHHHHHHHHHHHHhccCcchhhhh
Q 041079 302 ----RHAFKQNHPD-VGYE-EL---SSRVIQYAQGVPLALEILGCSLF------EKEKEVWESAINKLKRFLHPSIQEVL 366 (945)
Q Consensus 302 ----~~af~~~~~~-~~~~-~l---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~l 366 (945)
...++..... ..+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-...+..-...+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~~ 459 (824)
T COG5635 380 DAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIKW 459 (824)
T ss_pred HHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhcc
Confidence 1111111111 0011 11 12233444778888877773332 13345566666654433222212223
Q ss_pred hhhccCC-ChhhHh-hhhhhcc
Q 041079 367 KVSYDGL-DDNEKN-IFLDVAC 386 (945)
Q Consensus 367 ~~Sy~~L-~~~~k~-~fl~~a~ 386 (945)
...|+.+ .+...+ ++..+|.
T Consensus 460 ~~~~~~~~~~~~~~~l~~~la~ 481 (824)
T COG5635 460 SKTYAKLTTDQQDKWLLQLLAA 481 (824)
T ss_pred hhhhcccchHHHHHHHHHHHHH
Confidence 4455555 333344 5555553
No 332
>PTZ00301 uridine kinase; Provisional
Probab=95.01 E-value=0.019 Score=58.70 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=24.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
.+|||.|.+|.||||||+.+.+++...+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998875444
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.15 Score=56.64 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc--cceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF--EGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 193 (945)
..+++++|+.|+||||++.+++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 57999999999999999999998765444 3444443
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.95 E-value=0.19 Score=54.27 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=27.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-c-cceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-F-EGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~ 193 (945)
.++++|+|++|+||||++..++..+..+ - ..+.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4699999999999999999999877543 1 2444443
No 335
>PRK08233 hypothetical protein; Provisional
Probab=94.95 E-value=0.019 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998764
No 336
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.92 E-value=0.2 Score=55.32 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 141 LVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+||....++++.+.+.. ..-|.|+|-.|.||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777667666666554 6678999999999999999998753
No 337
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.091 Score=52.29 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=46.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh-ccccce-EEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC---HHHHHHHHc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS-SDFEGS-CFLENVREESQRSGGLACLRQELLSKLLKHENVILD---IDLNFRRLS 234 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~-~~F~~~-~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~l~~~L~ 234 (945)
.|.|.|.+|.||||+|+.+++++. .+.+.. +|...+ .. . ..+...+-.-+.... -..+ ...+..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~----~~-~--t~lg~~~k~~i~~g~-lv~d~i~~~~v~~rl~ 73 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI----AE-R--TELGEEIKKYIDKGE-LVPDEIVNGLVKERLD 73 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh----cc-C--ChHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence 478999999999999999999831 122211 121111 11 1 223333323233332 2222 455666664
Q ss_pred CC--CcEEEEecCCCh-HHHHHHh
Q 041079 235 RM--KVLIVFDDVTCF-RQIKSLI 255 (945)
Q Consensus 235 ~k--r~LlVLDdv~~~-~~l~~l~ 255 (945)
.. +-.+|+|+.-.. .+.+.+.
T Consensus 74 ~~d~~~~~I~dg~PR~~~qa~~l~ 97 (178)
T COG0563 74 EADCKAGFILDGFPRTLCQARALK 97 (178)
T ss_pred hhcccCeEEEeCCCCcHHHHHHHH
Confidence 32 228999998543 4444444
No 338
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.21 Score=58.41 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=86.1
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
...+..|.|...+++.+.+.. ++-|.++|++|.|||.||++++....-.|-... ..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS---------GS- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS---------GS- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc---------ch-
Confidence 446788988777766665432 677899999999999999999986543332110 00
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCC---------------hH-HHHHHhcCCCCCCCCCe
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTC---------------FR-QIKSLIRSPDWFMADSR 266 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~---------------~~-~l~~l~~~~~~~~~gs~ 266 (945)
+++....+.. ...-.+...+..++-+++|++|.+|. .+ .+..++...+.|+.+.-
T Consensus 218 --------~FVemfVGvG-AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 218 --------DFVEMFVGVG-ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred --------hhhhhhcCCC-cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 0000000000 00002333444556689999998743 12 26677777776664333
Q ss_pred EEE--EecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 267 III--TTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 267 IIi--TTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
||| .|-..+|+. --..++.+.++..+-..-.+++.-|+-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 333 333333332 223456777777777777777776663
No 339
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.0014 Score=67.03 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCCCCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCc--cccCCccccEEeccccccccccCcc----
Q 041079 539 KPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPS--SVGCLSGLVLLHLQACKMLKSLPCS---- 612 (945)
Q Consensus 539 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---- 612 (945)
+.+.+..++.|++|.|+-|+ +..+..+..|++|+.|.|..|.|..+.+ -+.+|++|++|.|..|.-.+.-+..
T Consensus 33 DIsic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 33 DISICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HHHHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 44556667777777777765 4455566778888888888888876654 3677888999999887655554432
Q ss_pred -cCCCCCCCEEe
Q 041079 613 -LFKLKSLEDLN 623 (945)
Q Consensus 613 -i~~l~~L~~L~ 623 (945)
+.-|++|+.||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 33477777775
No 340
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.98 Score=48.92 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=93.1
Q ss_pred HHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcc---------cc-ceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 148 VVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSD---------FE-GSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 148 l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------F~-~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
++.+.+.+.. .++..++|..|.||+++|+++.+.+-.. .+ ...+++ ... .. ..+..+. ++..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~-i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KD-LSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--Cc-CCHHHHH-HHHH
Confidence 3444555543 5677799999999999999999986211 11 122221 000 11 2222222 2222
Q ss_pred HHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEEEecC-cccccc-CCcceEEEcCC
Q 041079 215 KLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIIITTRN-KQVLRN-CSVKEIYEMKE 290 (945)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~~l~~ 290 (945)
.+.-.. .-.+.+=++|+|+++... ...+|+..+....+++.+|++|.+ ..+.+. ....+++++.+
T Consensus 80 ~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 80 KLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred HhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 221110 001467788889887653 355666666555677777766643 444433 23457899999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 291 LRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 291 L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
+++++..+.+.... .+ .+.+..++...+|.=-|++.+.
T Consensus 149 l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 149 PDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred CCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHHh
Confidence 99999988776531 11 2345566666776334555543
No 341
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.85 E-value=0.12 Score=51.60 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=62.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH--------------HHHHHHhCCCCcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ--------------ELLSKLLKHENVI 223 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~--------------~ll~~l~~~~~~~ 223 (945)
..+++|.|..|.|||||++.++..... ..+.+++... .... . ...... .+...+ ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~-~~~~~~~i~~~~q~~~~~~~tv~~~i---~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSD--L-EKALSSLISVLNQRPYLFDTTLRNNL---GRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHH--H-HHHHHhhEEEEccCCeeecccHHHhh---cccC
Confidence 679999999999999999999875432 2344444321 0000 0 000000 111111 0001
Q ss_pred CC----HHHHHHHHcCCCcEEEEecCCC---h---HHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 224 LD----IDLNFRRLSRMKVLIVFDDVTC---F---RQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 224 ~~----~~~l~~~L~~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
+. .-.+.+.+..++=++++|+... . +.+..++.... .+..||++|.+...... .++++.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 3334455667788899999632 1 22333333332 36788888888776542 4555554
No 342
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.013 Score=36.05 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=12.3
Q ss_pred ccceEeecCCCCcccCccccC
Q 041079 571 NIEKIILSGTAIEELPSSVGC 591 (945)
Q Consensus 571 ~L~~L~Ls~~~i~~lp~~i~~ 591 (945)
+|++|+|++|.|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 343
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.78 E-value=0.074 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|.|.|++|+||||+|+.++.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 344
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.19 Score=55.10 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC--
Q 041079 148 VVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-- 221 (945)
Q Consensus 148 l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-- 221 (945)
+.++.+.|.. ..+|.|-|-+|||||||..+++.++..+- .+.|+.. +. ...++. --...+....+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EE-----S~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EE-----SLQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC--Cc-----CHHHHH-HHHHHhCCCccce
Confidence 4566666665 67999999999999999999999998777 7777742 21 222221 11222321111
Q ss_pred ---ccCCHHHHHHHHc-CCCcEEEEecC
Q 041079 222 ---VILDIDLNFRRLS-RMKVLIVFDDV 245 (945)
Q Consensus 222 ---~~~~~~~l~~~L~-~kr~LlVLDdv 245 (945)
...+.+.+.+.+. .++-++|+|-+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 1233666666664 57789999987
No 345
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.78 E-value=0.62 Score=48.40 Aligned_cols=210 Identities=18% Similarity=0.224 Sum_probs=119.1
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc------cccceEEEEechh-----------
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS------DFEGSCFLENVRE----------- 197 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~----------- 197 (945)
..+.+.++++.-..+.++... .+...++|+.|.||-|.+..+.+++-+ +-+..-|......
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 334577888888888877764 688999999999999999888876532 2233333321111
Q ss_pred -----hhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCc-EEEEecCCCh--HHHHHHhcCCCCCCCCCeEEE
Q 041079 198 -----ESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKV-LIVFDDVTCF--RQIKSLIRSPDWFMADSRIII 269 (945)
Q Consensus 198 -----~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIi 269 (945)
.|+....-..+.++++.++........ -..+.+ ++|+-.+|.. +.-.+|..........+|+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~--------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET--------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh--------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 111101112344555555544322110 112233 5566666553 223334433333346778877
Q ss_pred EecCcc-c-cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc-hHHHhh-----cccc-
Q 041079 270 TTRNKQ-V-LRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL-ALEILG-----CSLF- 340 (945)
Q Consensus 270 TTR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~lg-----~~L~- 340 (945)
...+-. + ...-...-.++++..+++|-...++..+-+.+..-+ .+++.+|+++++|+-. ||-++- ....
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 443221 1 111111236889999999999999988765554434 6889999999998742 332211 1111
Q ss_pred ----CCCHHHHHHHHHHHHh
Q 041079 341 ----EKEKEVWESAINKLKR 356 (945)
Q Consensus 341 ----~~~~~~w~~~l~~l~~ 356 (945)
....-+|+-++.+...
T Consensus 241 a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccCCCCCCccHHHHHHHHHH
Confidence 1235689988887654
No 346
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=1.2 Score=52.73 Aligned_cols=96 Identities=24% Similarity=0.334 Sum_probs=57.6
Q ss_pred cCCCCCCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechh
Q 041079 132 VFPRDNNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVRE 197 (945)
Q Consensus 132 ~~~~~~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 197 (945)
..|.+.=+++=|.+....+|.+-+.. ..-|.++|++|.|||-+|++|+-+.+-.| +. +
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V-- 736 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V-- 736 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e--
Confidence 45552334566677777777765543 34688999999999999999998765443 32 1
Q ss_pred hhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHH-HcCCCcEEEEecCCC
Q 041079 198 ESQRSGGLACLRQELLSKLLKHENVILDIDLNFRR-LSRMKVLIVFDDVTC 247 (945)
Q Consensus 198 ~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~ 247 (945)
.|. .+.... .++. +.+...+-++ -..+++.|.+|.+|.
T Consensus 737 -----KGP-ELLNMY----VGqS--E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 737 -----KGP-ELLNMY----VGQS--EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -----cCH-HHHHHH----hcch--HHHHHHHHHHhhccCCeEEEeccccc
Confidence 121 122222 2211 1222233333 346899999999865
No 347
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.70 E-value=0.021 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=21.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 161 LGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
|-|+|.+|+|||++|+.++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998765443
No 348
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.69 E-value=0.028 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|+|++|.||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999873
No 349
>PRK13947 shikimate kinase; Provisional
Probab=94.65 E-value=0.026 Score=56.06 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987443
No 350
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.63 E-value=0.067 Score=59.53 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=58.5
Q ss_pred Hhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhcccc---ceEEEEechhhhhccCCHHHHHH--HHHHHHhCCCCccCC
Q 041079 152 QSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFE---GSCFLENVREESQRSGGLACLRQ--ELLSKLLKHENVILD 225 (945)
Q Consensus 152 ~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~l~~l~~--~ll~~l~~~~~~~~~ 225 (945)
.+.+.. ...|.|+|+.|.||||+++.+.+.+....+ .++.+.+..+ ........ ....+.... ....+
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~~~~v~Q~~v~-~~~~~ 200 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETISASVCQSEIP-RHLNN 200 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----Eeccccccccceeeeeecc-ccccC
Confidence 334443 789999999999999999999988755443 1233322211 11111100 000010000 01112
Q ss_pred -HHHHHHHHcCCCcEEEEecCCChHHHHHHhc
Q 041079 226 -IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIR 256 (945)
Q Consensus 226 -~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~ 256 (945)
...++..|+..+-.+++..+.+.+..+..+.
T Consensus 201 ~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 201 FAAGVRNALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HHHHHHHHhccCCCEEeeeeeCCHHHHHHHHH
Confidence 6777888999999999999999888765443
No 351
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.62 E-value=0.027 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|.+|+||||||+.++..+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 352
>PRK06217 hypothetical protein; Validated
Probab=94.59 E-value=0.13 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|.|.|++|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 353
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.59 E-value=0.16 Score=53.71 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=52.0
Q ss_pred cCEEEEEecCCCcHHHHH-HHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIA-RAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|.+|+|||+|| ..+.++. .-+..+.+..+.+.. ..+..+.+++...-..... ...+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 678999999999999996 4555543 345554555554433 3344555555432111110 0011
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChHH-HHHH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFRQ-IKSL 254 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~~-l~~l 254 (945)
.-.+-+++ +++.+|+|+||+....+ ++++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 11122222 58999999999966543 4443
No 354
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.57 E-value=0.037 Score=57.86 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..+|+|.|..|.|||||++.+...+....
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 66999999999999999999998776543
No 355
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.57 E-value=0.11 Score=57.49 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.+.++|....++++.+.+.. ..-|.|+|-.|.||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45689999888888877765 667899999999999999999763
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.56 E-value=0.12 Score=50.02 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.56 E-value=0.039 Score=54.29 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=62.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC----HHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD----IDLNFRRL 233 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~----~~~l~~~L 233 (945)
..+++|.|..|.|||||.+.++.... ...+.+++... ... . ......... .+.-. ...+. .-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~-~~~~~~~~~---~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-F-ASPRDARRA---GIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-c-CCHHHHHhc---CeEEE-EecCHHHHHHHHHHHHH
Confidence 67999999999999999999987543 34555665421 110 0 111110000 00000 00111 33344556
Q ss_pred cCCCcEEEEecCCC---hH---HHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 234 SRMKVLIVFDDVTC---FR---QIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 234 ~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
-.++-++++|+... .. .+..++..+. ..|..||++|.+...+... .+.++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 67788899999632 22 2333332221 2467888888887643332 3344443
No 358
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.56 E-value=0.066 Score=61.51 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=52.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC---------HH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD---------ID 227 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---------~~ 227 (945)
.+.++|+|.+|+|||||++.+++.+.... +..+++..+.+.... +..+...+-.++......... .-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 77899999999999999999999875533 344455555443332 333333221111111000000 12
Q ss_pred HHHHHH--cCCCcEEEEecCCChHH
Q 041079 228 LNFRRL--SRMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 228 ~l~~~L--~~kr~LlVLDdv~~~~~ 250 (945)
.+-+++ .++.|||++|++.....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 223334 68999999999866554
No 359
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.51 E-value=0.18 Score=62.01 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=37.4
Q ss_pred CCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 138 NNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...++|....++++.+.+.. ..-|.|+|..|.|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 45799999888887666554 6689999999999999999998754
No 360
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.035 Score=56.18 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=25.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+.+|||.|.+|.||||+|+.++..+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 4689999999999999999999988766
No 361
>PRK06547 hypothetical protein; Provisional
Probab=94.50 E-value=0.046 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|++|.||||+|+.+++..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999864
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.14 Score=50.77 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=64.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH--------------HHHHHHhCCCCcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ--------------ELLSKLLKHENVI 223 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~--------------~ll~~l~~~~~~~ 223 (945)
..+++|.|..|.|||||.+.++.... ...+.+++.... ... ........ .+...+... ..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~--~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~--G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD--LDLESLRKNIAYVPQDPFLFSGTIRENILSG--GQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh--cCHHHHHhhEEEEcCCchhccchHHHHhhCH--HH
Confidence 67999999999999999999988543 234555553211 000 00000000 000000000 00
Q ss_pred CCHHHHHHHHcCCCcEEEEecCCC------hHHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 224 LDIDLNFRRLSRMKVLIVFDDVTC------FRQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 224 ~~~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
...-.+.+.+..++-+++||+-.. ...+..++..+. .+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 002334455667788999999632 223444444332 35678888888766543 4555554
No 363
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.45 E-value=0.14 Score=50.97 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=59.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEec--hhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENV--REESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 235 (945)
..+++|.|..|.|||||++.++..... ..+.+.+... .-..+. ..+..=+ ...-.+.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~LSgGq--------------~qrv~laral~~ 88 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-IDLSGGE--------------LQRVAIAAALLR 88 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CCCCHHH--------------HHHHHHHHHHhc
Confidence 779999999999999999999875432 3344444211 000011 0000000 002334455667
Q ss_pred CCcEEEEecCCC---hH---HHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcC
Q 041079 236 MKVLIVFDDVTC---FR---QIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMK 289 (945)
Q Consensus 236 kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (945)
++-++++|+-.. .. .+..++..... ..+..||++|.+...+... .++++.+.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 788999999632 22 22223322211 1235678888776554432 23444444
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.40 E-value=0.038 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.++|.+.|++|.||||+|+++......
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 368999999999999999999887543
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.39 E-value=0.035 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 366
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.37 E-value=0.078 Score=57.50 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=39.7
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
..+.++=.......+...+...+.|.|.|.+|+||||+|+.++.++...|-
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 344555555666667777766788999999999999999999998865553
No 367
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=2 Score=45.11 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.=.++-|.+...+.|.+..-- -+-|.++|++|.||+.||++|+-....
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 335678999988888775432 467899999999999999999986543
No 368
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.35 E-value=0.049 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887644
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.35 E-value=0.37 Score=51.77 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 193 (945)
..++.|.|.+|+||||+|.+++.....+ =..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 6789999999999999999998876544 34566764
No 370
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.34 E-value=0.1 Score=58.75 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=49.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC--------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD-------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~-------- 225 (945)
...++|.|..|.|||||++.++..... +..++ ..+.+... .+..+.+.++..-..... ...+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER~r---Ev~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGERGR---EVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCChH---HHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 688999999999999999999864332 34444 34544332 233444443322111110 0011
Q ss_pred ----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+.+++ +++++|+++||+-...
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 12223333 5899999999986544
No 371
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.33 E-value=0.035 Score=57.10 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|++|+||||||+.++..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999998764
No 372
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.33 E-value=0.14 Score=55.58 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=58.3
Q ss_pred HHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccc--cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HH
Q 041079 151 IQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDF--EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD-ID 227 (945)
Q Consensus 151 l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~ 227 (945)
|...+.....+.|.|..|.||||+++++.+.+.... +.++-+.+..+.......... +... ....+ .+
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~-~~~~~~~~ 195 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTS-DDAISMTR 195 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEec-CCCCCHHH
Confidence 344444467889999999999999999998876532 233444433332111000000 0000 01113 57
Q ss_pred HHHHHHcCCCcEEEEecCCChHHHHHH
Q 041079 228 LNFRRLSRMKVLIVFDDVTCFRQIKSL 254 (945)
Q Consensus 228 ~l~~~L~~kr~LlVLDdv~~~~~l~~l 254 (945)
.++..|+..+=.||+..+.+.+.++.+
T Consensus 196 ~l~~aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 196 LLKATLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HHHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 778888888999999999998876543
No 373
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.32 E-value=0.1 Score=55.55 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=63.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHH--HHH--HhCCCCccCC---HHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQEL--LSK--LLKHENVILD---IDLNF 230 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~l--l~~--l~~~~~~~~~---~~~l~ 230 (945)
...++|+|..|.|||||.+.++..+... .+.+++.. ...... .....+...+ +.+ +....+...+ ...+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecc-hhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 3688999999999999999999876543 33333321 000000 0011111110 000 0000000011 22233
Q ss_pred HHHc-CCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccc
Q 041079 231 RRLS-RMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQV 276 (945)
Q Consensus 231 ~~L~-~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 276 (945)
..+. ..+=++++|.+...+.+..+..... .|..+|+||-+..+
T Consensus 188 ~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 3333 5788999999988887777766653 57889999986554
No 374
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.28 E-value=0.048 Score=60.77 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=35.9
Q ss_pred CCccchHHHHHHHHhhhcc----------------cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 139 NQLVGVESRVVAIQSLLGA----------------APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
.++||.+...+.+.-.+.. .+.|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4567777776666443331 46889999999999999999999875544
No 375
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.27 E-value=0.33 Score=47.92 Aligned_cols=77 Identities=8% Similarity=-0.023 Sum_probs=43.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCcc---CCHHHHHHHHcC-
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVI---LDIDLNFRRLSR- 235 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~---~~~~~l~~~L~~- 235 (945)
++.|.|.+|.|||++|.++... ....+.|+..... .+. .+++.+..-........ .....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA-----FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc-----CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 3679999999999999999765 2345667653221 222 23433333221122111 114455555532
Q ss_pred -CCcEEEEecC
Q 041079 236 -MKVLIVFDDV 245 (945)
Q Consensus 236 -kr~LlVLDdv 245 (945)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 3447999996
No 376
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.26 E-value=0.18 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 377
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.25 E-value=0.038 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.24 E-value=0.25 Score=52.21 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh----ccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC---
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS----SDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD--- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~--- 225 (945)
.+.++|.|-.|+|||+|+..+.++.. .+-+.++| ..+.+.. .....+.+++...-..... ...+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~-~~IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVF-AAMGITM---EDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEE-EEecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 67899999999999999999887653 12233444 4454433 3344555554432111111 0011
Q ss_pred --------HHHHHHHH--c-CCCcEEEEecCCChHH
Q 041079 226 --------IDLNFRRL--S-RMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 226 --------~~~l~~~L--~-~kr~LlVLDdv~~~~~ 250 (945)
.-.+-+++ + ++++|+++||+-...+
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 22233333 3 7899999999866543
No 379
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.23 E-value=0.12 Score=55.71 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=64.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCC--------CCccCC----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKH--------ENVILD---- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~--------~~~~~~---- 225 (945)
..-||+.|-+|+|||-|.+++.+.+..+..+...+..+.+..++ -..+..++...-... .++...
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 67899999999999999999999998888877777677665544 334444444331111 111111
Q ss_pred --------HHHHHHHHcCCCcEEEEecCCChHH----HHHHhcCCCC
Q 041079 226 --------IDLNFRRLSRMKVLIVFDDVTCFRQ----IKSLIRSPDW 260 (945)
Q Consensus 226 --------~~~l~~~L~~kr~LlVLDdv~~~~~----l~~l~~~~~~ 260 (945)
++.+++. .++.+|+.+||+....| +.++++..+.
T Consensus 224 ValtGlT~AEyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 224 VALTGLTMAEYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred ehhhhhhHHHHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 2222222 36889999999966544 6667766553
No 380
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.22 E-value=0.054 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=26.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+|+|.|++|.||||+|+.++..+...-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999999875432234444
No 381
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.21 E-value=0.063 Score=54.07 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=34.7
Q ss_pred CCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHH
Q 041079 138 NNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
..+++|.+.....+.-......-+.+.|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3568899988888877777788999999999999999999986
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.19 E-value=0.084 Score=53.19 Aligned_cols=96 Identities=22% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHh-CCCC----ccCC
Q 041079 151 IQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLL-KHEN----VILD 225 (945)
Q Consensus 151 l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~-~~~~----~~~~ 225 (945)
+...+.....++|.|..|.||||+++.+...+... ...+.+.+..+.... . .... ++. .... ...+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~ 88 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVT 88 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccC
Confidence 33344448899999999999999999998876533 233333322111100 0 0000 000 0000 0111
Q ss_pred -HHHHHHHHcCCCcEEEEecCCChHHHHHHh
Q 041079 226 -IDLNFRRLSRMKVLIVFDDVTCFRQIKSLI 255 (945)
Q Consensus 226 -~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~ 255 (945)
.+.++..++..+=.++++.+.+.+.++.+.
T Consensus 89 ~~~~l~~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 89 MADLLRSALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HHHHHHHHhccCCCEEEEEccCcHHHHHHHH
Confidence 566667788888899999999988765443
No 383
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.18 E-value=0.14 Score=58.14 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=52.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|.+|+|||+|+..+....... -+.++|. .+.+.. ..+..+.+++...-..... ....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGeR~---rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGERC---REGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-EeccCc---HHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 7889999999999999999998765432 3445544 454433 3344555554432111111 0011
Q ss_pred -----HHHHHHHH---cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL---SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L---~~kr~LlVLDdv~~~~ 249 (945)
.-.+.+++ +++++|+++||+-...
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 22233444 4689999999986544
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.17 E-value=0.059 Score=60.06 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCccchHHHHHHHHhhhcc----------------cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 138 NNQLVGVESRVVAIQSLLGA----------------APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~----------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..+++|.+...+.+...+.. .+.|.++|++|+||||||+.++..+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 34578888777777655522 36889999999999999999999765443
No 385
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.15 E-value=0.079 Score=49.65 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHhhhcccCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 151 IQSLLGAAPLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 151 l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+.+.|....+|.+.|.-|.||||+++.+++.+
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33334446799999999999999999999865
No 386
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.14 E-value=0.06 Score=59.68 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=44.4
Q ss_pred CCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEE
Q 041079 138 NNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCF 191 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 191 (945)
...++|.+..+..+...+...+.+.+.|.+|+|||+||+.++..+...|-.+-+
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 344899998888888777778899999999999999999999988755544433
No 387
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.14 E-value=0.24 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 388
>PRK13949 shikimate kinase; Provisional
Probab=94.12 E-value=0.043 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+-|.|+|++|.||||+|+.++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999764
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.11 E-value=0.35 Score=47.46 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHH---HhCC-----CCccCC-----
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSK---LLKH-----ENVILD----- 225 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~---l~~~-----~~~~~~----- 225 (945)
.+|-|++-.|.||||.|..++-+...+=-.++++.-.... .. .+-....+.+.-. .... .+...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WP-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cc-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4778888899999999999887754443333322211111 01 1111222211000 0000 000000
Q ss_pred --HHHHHHHHcC-CCcEEEEecCC--------ChHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 --IDLNFRRLSR-MKVLIVFDDVT--------CFRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 --~~~l~~~L~~-kr~LlVLDdv~--------~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
.+..++.+.. .-=|+|||.+. +.+++-.++... .++..||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCCC
Confidence 2333444443 44599999983 233444455443 36789999999763
No 390
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.08 E-value=0.44 Score=45.50 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=34.7
Q ss_pred cHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeec
Q 041079 8 PESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVD 61 (945)
Q Consensus 8 ~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ 61 (945)
.-++.++|+++.+.+.|+.-+...+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 3478999999999999999877666552 25666655432 2334566655555
No 391
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.06 E-value=0.064 Score=55.22 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN 194 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 194 (945)
.+++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 6789999999999999999999877666677888863
No 392
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.06 E-value=0.082 Score=50.39 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=26.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 193 (945)
++|.|+|..|+|||||++.+.+++..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999988754 44443443
No 393
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.06 E-value=0.2 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|..|+|||||++.++..+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998754
No 394
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.05 E-value=0.12 Score=57.41 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=57.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
.+-+-|||..|.|||.|.-.+|+.+...-..++-+. .-+..+.+.+-. +. ........+.+.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~-~~---~~~~~l~~va~~l~~~~ 128 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQ-LR---GQDDPLPQVADELAKES 128 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHH-Hh---CCCccHHHHHHHHHhcC
Confidence 677899999999999999999997643211111111 111222222221 11 22223566677788888
Q ss_pred cEEEEecC--CChH---HHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 238 VLIVFDDV--TCFR---QIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 238 ~LlVLDdv--~~~~---~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
.||.||.+ .+.. -+..|+..+- ..|. ++|+|.+.
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 89999985 3333 3555555442 3455 55555444
No 395
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.02 E-value=0.17 Score=53.75 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=26.6
Q ss_pred HHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 149 VAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 149 ~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
+.|.++|.. ..+.=|+|.+|+|||+||..++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 355566655 778899999999999999988754
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.067 Score=54.55 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=29.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+|+|+|++|.||||||+.+...+...-...+++.
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 679999999999999999999998755434455653
No 397
>PRK08506 replicative DNA helicase; Provisional
Probab=93.98 E-value=0.41 Score=55.67 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHh
Q 041079 141 LVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLL 217 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~ 217 (945)
..|...-+..|.+++.+ ..++.|-|.+|+|||++|..++.....+=..++|+. -+ -....+...+++...
T Consensus 172 ~~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lE-Ms~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LE-MPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------Cc-CCHHHHHHHHHHHhc
Confidence 45556556666666544 679999999999999999999887644333455553 22 445566666666543
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.96 E-value=0.24 Score=57.14 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=35.0
Q ss_pred HHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 148 VVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 148 l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
+.++.++|.. ..++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555566654 779999999999999999999887655434566765
No 399
>PRK13948 shikimate kinase; Provisional
Probab=93.95 E-value=0.049 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.|.++||.|+||||+++.+++++.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999998874
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.94 E-value=0.3 Score=56.29 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=34.8
Q ss_pred HHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 148 VVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 148 l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
+.++.+.|.. ..++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555554 679999999999999999999987764444567765
No 401
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.17 Score=50.37 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH---------------HHHHHHhCCCCc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ---------------ELLSKLLKHENV 222 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~---------------~ll~~l~~~~~~ 222 (945)
..+++|+|..|.|||||++.++.... ...+.+++... .... .. ..... .+...+. -...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~--~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~-LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKK--EP-EEVKRRIGYLPEEPSLYENLTVRENLK-LSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Eccc--ch-HhhhccEEEEecCCccccCCcHHHHhh-cCHH
Confidence 67999999999999999999987543 23444444221 0000 00 00000 0000000 0000
Q ss_pred cCCHHHHHHHHcCCCcEEEEecCCC---h---HHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 223 ILDIDLNFRRLSRMKVLIVFDDVTC---F---RQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 223 ~~~~~~l~~~L~~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
....-.+...+..++=++++|+... . ..+..++..+. ..|..||++|.+...+... .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 0003344555667888999999632 1 22333333322 2367889999887655433 3445444
No 402
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.92 E-value=1.3 Score=48.34 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=32.6
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-ccHHHHHHHHHHHhcCCcchH
Q 041079 285 IYEMKELRDDHALELFSRHAFKQNHPD-VGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal 332 (945)
+++|++++.+|+..++..++-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 222344555555669998644
No 403
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.91 E-value=0.045 Score=58.90 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=67.1
Q ss_pred CCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 139 NQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
+.+.-.....+++.++|.. ...|.|.|..|.||||+++++...+...-...+-+.+..+.........
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~-------- 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQI-------- 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEE--------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceE--------
Confidence 3444444444555555544 6899999999999999999999877655233344443222111100000
Q ss_pred HHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeE-EEEec
Q 041079 215 KLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRI-IITTR 272 (945)
Q Consensus 215 ~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~I-IiTTR 272 (945)
.+... ....+ .+.++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|..
T Consensus 176 ~~~~~-~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 176 QIQTR-RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp EEEEE-TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred EEEee-cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000 01112 67778888888889999999998887763322 256666 44443
No 404
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.90 E-value=0.28 Score=54.06 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=32.0
Q ss_pred HHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccc------cceEEEE
Q 041079 149 VAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDF------EGSCFLE 193 (945)
Q Consensus 149 ~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 193 (945)
..+.++|.. ..++-|+|.+|+|||++|.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 334444543 77889999999999999999987543221 3577775
No 405
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.88 E-value=0.041 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 406
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.87 E-value=0.081 Score=63.13 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=48.8
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEe
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLEN 194 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~ 194 (945)
..+.++|.+..++.|...+...+.+.++|.+|.||||+|+.+++.+.. .++...|+.+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 456789999999999888877888999999999999999999987643 3577778765
No 407
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.86 E-value=0.15 Score=60.11 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=39.1
Q ss_pred CCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 138 NNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...++|....++++.+.+.. ..-|.|+|..|+|||++|+.+.+.-.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45789999998888877766 67889999999999999999988643
No 408
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.86 E-value=0.046 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.565 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|.|.|.+|.||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 409
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.85 E-value=0.12 Score=58.41 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcc---------cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 145 ESRVVAIQSLLGA---------APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 145 ~~~l~~l~~~L~~---------~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..-++++..||.. .++..|.|++|+||||..+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4456667777662 6799999999999999999998764
No 410
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.3 Score=59.64 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=65.7
Q ss_pred CCccchHHHHHHHHhhhcc----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHH
Q 041079 139 NQLVGVESRVVAIQSLLGA----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACL 208 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l 208 (945)
+.++|.+..+..|...+.. .-...+.|+.|+|||-||++++..+.+..+..+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 3477888888888777655 225678999999999999999999877776665553 2222
Q ss_pred HHHHHHHHhCCCCcc--C-CHHHHHHHHcCCCc-EEEEecCCChH
Q 041079 209 RQELLSKLLKHENVI--L-DIDLNFRRLSRMKV-LIVFDDVTCFR 249 (945)
Q Consensus 209 ~~~ll~~l~~~~~~~--~-~~~~l~~~L~~kr~-LlVLDdv~~~~ 249 (945)
++ .+++.+..+.. . ....+.+.++.+++ +|.||||+..+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22 33443333321 1 15678888887775 56689997654
No 411
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.83 E-value=0.05 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 412
>PHA02244 ATPase-like protein
Probab=93.81 E-value=0.2 Score=55.16 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=34.6
Q ss_pred CCCccchHHHH----HHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 138 NNQLVGVESRV----VAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 138 ~~~~vGr~~~l----~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+..++|....+ ..+..++....-|.|+|.+|+|||+||+++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34567755444 4445555556678899999999999999999976433
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.046 Score=52.71 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 041079 160 LLGIWGIGGIGKTIIARAIF 179 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~ 179 (945)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 414
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.79 E-value=0.26 Score=48.93 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=63.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCc----------cCC--
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENV----------ILD-- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~----------~~~-- 225 (945)
..+++|.|..|.|||||.+.++.... ...+.+++... ... . .........+ . ...+... .+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~-~~~~~~~~~i-~-~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-Q-WDPNELGDHV-G-YLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-c-CCHHHHHhhe-E-EECCCCccccCcHHHHCcCHHH
Confidence 67999999999999999999987543 23444444321 000 0 0111111100 0 0000000 011
Q ss_pred --HHHHHHHHcCCCcEEEEecCCC------hHHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 226 --IDLNFRRLSRMKVLIVFDDVTC------FRQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 226 --~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
.-.+.+.+..++=+++||+... ...+..++.... ..|..||++|.+..... . .++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 3334455566777899999632 122333333322 24677888888876654 3 4556555
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.78 E-value=0.57 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.++++++|+.|+||||++..++..+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence 5799999999999999999999876433
No 416
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.052 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 417
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.77 E-value=0.045 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
+|||.|.+|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 418
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.28 Score=51.18 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCcEEEEecC----CCh--HHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEE
Q 041079 226 IDLNFRRLSRMKVLIVFDDV----TCF--RQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIY 286 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv----~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~ 286 (945)
...+.+.|..++=|++||.- |.. ..+-+++..+.. .|..|+++|-|-+..... .++++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~-~D~vi 210 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY-FDRVI 210 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh-CCEEE
Confidence 45567778899999999983 333 335555555542 388999999987655443 34443
No 419
>PRK13946 shikimate kinase; Provisional
Probab=93.71 E-value=0.057 Score=54.35 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.|.+.|++|.||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999873
No 420
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.67 E-value=0.4 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|.|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 679999999999999999999864
No 421
>PRK14526 adenylate kinase; Provisional
Probab=93.67 E-value=0.24 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|.|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7799999999999999998765
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.63 E-value=0.05 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.718 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 423
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.61 E-value=0.13 Score=56.04 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+++-|+|++|+||||||..++......-..++|++
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 678999999999999999998877666666777875
No 424
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.60 E-value=0.1 Score=56.80 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=40.3
Q ss_pred CCCCccchHHHHHHH---Hhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEE
Q 041079 137 NNNQLVGVESRVVAI---QSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCF 191 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l---~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 191 (945)
...++||.....+.. .+++.. .+.|.+.|++|.|||+||.+++..+....+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 457899988766654 344433 7899999999999999999999999888776554
No 425
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.60 E-value=0.051 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 426
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.58 E-value=0.55 Score=61.24 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+-|.++|++|.|||.||+++|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 7789999999999999999999864
No 427
>PRK14528 adenylate kinase; Provisional
Probab=93.57 E-value=0.25 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 428
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.54 E-value=0.063 Score=52.29 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
+-|.++||.|.||||+.+.++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3588999999999999999998876554
No 429
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.52 E-value=0.12 Score=61.88 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=46.9
Q ss_pred CCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEec
Q 041079 138 NNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENV 195 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 195 (945)
.+.++|.+..++.+...+...+.+.++|++|+||||+|+.+++.+... |...+++.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 456899999999888888877778899999999999999999987654 4555566544
No 430
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.51 E-value=0.051 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.|+|+|+.|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.49 E-value=0.055 Score=55.76 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+.+.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 432
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.087 Score=54.57 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=41.8
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
...++=|.++.+++|.+...- ..-|.++|.+|.|||-||++|+|+-+..|-
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 345677889999999876543 567889999999999999999998776664
No 433
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.46 E-value=0.062 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+++|.|++|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 434
>PHA02774 E1; Provisional
Probab=93.45 E-value=0.31 Score=56.51 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 146 SRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 146 ~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.-+..+..++.. ...+.|+|++|.|||.+|..+.+-+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455666666666 35899999999999999999998763
No 435
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.39 E-value=0.094 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhc
Q 041079 161 LGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 436
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.38 E-value=0.047 Score=31.20 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=5.8
Q ss_pred CCCEEECCCCCCcccc
Q 041079 718 LLEELDLRRNNFERVP 733 (945)
Q Consensus 718 ~L~~L~Ls~n~l~~lp 733 (945)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4445555555444443
No 437
>PRK06851 hypothetical protein; Provisional
Probab=93.35 E-value=0.22 Score=55.13 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred cchHHHHHHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHh-hccccceEEEE
Q 041079 142 VGVESRVVAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKI-SSDFEGSCFLE 193 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 193 (945)
-|.-+.++.+. .. .+.+.|.|.+|+|||||++.++... ...++..++-+
T Consensus 200 ~G~~s~~~~l~---~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 200 KGAVDFVPSLT---EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred CcHHhhHHhHh---cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 34455555444 33 6889999999999999999999976 44566555544
No 438
>PRK14530 adenylate kinase; Provisional
Probab=93.35 E-value=0.068 Score=55.28 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+.|.|+|++|+||||+|+.++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 439
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.34 E-value=0.12 Score=61.05 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=38.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..++++|.+..++.+...+.. ...|.|+|.+|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 446799999999999877655 5678899999999999999998743
No 440
>PRK13975 thymidylate kinase; Provisional
Probab=93.33 E-value=0.07 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998864
No 441
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.11 Score=50.70 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=64.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCC-Cc--cCCHHHHHHHHc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHE-NV--ILDIDLNFRRLS 234 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~-~~--~~~~~~l~~~L~ 234 (945)
..+++|.|..|.|||||++.+...+. ...+.+++.... ... ........ .+.--. -. ....-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~--~~~~~~~~----~i~~~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK--LPLEELRR----RIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc--CCHHHHHh----ceEEEeeCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653 345556654221 000 00111110 000000 00 001333445556
Q ss_pred CCCcEEEEecCCC---hH---HHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEc
Q 041079 235 RMKVLIVFDDVTC---FR---QIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEM 288 (945)
Q Consensus 235 ~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (945)
..+=++++|+... .. .+..++.... ..+..+|++|.+...+... .++++.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6788999999742 22 2333333222 2356788888877655543 3455554
No 442
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.31 E-value=0.072 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|+|+.|.||||+|+.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35689999999999999999998753
No 443
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.069 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+|.|-|++|.||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999764
No 444
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.27 E-value=0.24 Score=48.54 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCcEEEEec----CCChHHHH--HHhcCCCCCCCCCeEEEEecCccccccC
Q 041079 226 IDLNFRRLSRMKVLIVFDD----VTCFRQIK--SLIRSPDWFMADSRIIITTRNKQVLRNC 280 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDd----v~~~~~l~--~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 280 (945)
.-.+.+.+-+++-+|+-|. +|....|+ .++..++ ..|..|+++|-+.++...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 4455666778899999886 44444444 3333333 4799999999999887766
No 445
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.25 E-value=0.15 Score=47.55 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=26.3
Q ss_pred cCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeec
Q 041079 488 LNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLR 555 (945)
Q Consensus 488 l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 555 (945)
+...+|.++++|+.+.+.. .+.......+..+.+|+.+.+.++ +..++. ..+.+++.|+.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~-~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGD-NAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-T-TTTTT-TT-EEEEET
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccce-eeeeccccccccccc
Confidence 4456677777777777653 233333334555555666665542 222222 234444445555553
No 446
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.61 Score=47.31 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCcEEEEecCCChHHHHH------HhcCCCCCCCCCeEEEEecCccccccCCcceEEE
Q 041079 226 IDLNFRRLSRMKVLIVFDDVTCFRQIKS------LIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYE 287 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv~~~~~l~~------l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~ 287 (945)
...+.+.+--++-+.|||..|+--++++ ....+. .+|+.++|.|-...++....++.+|-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 4556666667888999999876333222 222222 35777777777777877776665543
No 447
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.18 E-value=0.43 Score=54.59 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=36.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
.+.++|.|-.|+|||||+..+...+......++.+..+.+.. ..+..+...++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERg---rEv~efi~~~~~ 214 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERT---REGNDLYMEMKE 214 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCc---hHHHHHHHHHHh
Confidence 678999999999999999999887543333444444555543 234455555544
No 448
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.15 E-value=0.71 Score=56.29 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+.++|....++++.+.... ..-|.|+|-.|+||+++|+++.+.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 346789988888877766654 5568899999999999999998753
No 449
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.14 E-value=0.42 Score=54.80 Aligned_cols=87 Identities=22% Similarity=0.146 Sum_probs=49.9
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|-.|+||||||. .+.++. .-+..|.+..+.+.. ..+..+.+.+...-..... ..++
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~IGeR~---rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCAIGQRA---SAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEEeccCc---HHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 6789999999999999974 677753 345434444454433 2344444444432111111 0011
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
...+-+++ +++.+|||+||+....
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 12233333 5899999999985543
No 450
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.13 E-value=0.25 Score=55.95 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=48.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC--------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD-------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~-------- 225 (945)
...++|.|..|+|||||++.+++.... +..++ ..+.+..+ .+..+....+..-..... ...+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~-~~iGER~r---Ev~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVI-GLIGERGR---EVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEE-EEEecCcH---HHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 689999999999999999999876543 33443 33443332 233343333322110000 0011
Q ss_pred ----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 ----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 ----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+.+++ +++.+|+++||+-...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~A 261 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRFA 261 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHHH
Confidence 12223333 5899999999995543
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.12 E-value=0.15 Score=55.78 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=53.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRLSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~k 236 (945)
...+.|.|..|.||||+++++...+.... ..+.+.+..+..........+ ...-........+ .+.+...|+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----EecCCCCCcCccCHHHHHHHHhcCC
Confidence 78999999999999999999987664332 344444333321110000000 0000000001112 56677788888
Q ss_pred CcEEEEecCCChHHHHHH
Q 041079 237 KVLIVFDDVTCFRQIKSL 254 (945)
Q Consensus 237 r~LlVLDdv~~~~~l~~l 254 (945)
.=.||+|.+...+.++.+
T Consensus 219 pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 219 PDRIILGELRGDEAFDFI 236 (308)
T ss_pred CCeEEEeccCCHHHHHHH
Confidence 889999999987765543
No 452
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.09 E-value=0.12 Score=55.21 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=30.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN 194 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 194 (945)
++|+|+|.+|+|||||+..+...++.+. .++.+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 5799999999999999999999998887 5666653
No 453
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.06 E-value=0.45 Score=51.97 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=30.9
Q ss_pred HHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh--hc----cccceEEEE
Q 041079 149 VAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI--SS----DFEGSCFLE 193 (945)
Q Consensus 149 ~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~--~~----~F~~~~~~~ 193 (945)
..|..+|.. ..++-|+|.+|+|||+||..++-.. .. .=..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 344455554 6788899999999999998876432 11 123567775
No 454
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.05 E-value=0.078 Score=53.74 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999874
No 455
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.99 E-value=0.15 Score=54.37 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..++.|.|.+|.||||+|.+++.....+=+.++|+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 789999999999999999998776544445677775
No 456
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.98 E-value=0.1 Score=52.43 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=29.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCF 191 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 191 (945)
.+++.|+|+.|+|||||++.+.......|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4789999999999999999999988888854443
No 457
>PRK14529 adenylate kinase; Provisional
Probab=92.96 E-value=0.34 Score=49.96 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=47.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC---HHHHHHHHcC
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD---IDLNFRRLSR 235 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~l~~~L~~ 235 (945)
.|.|.|++|+||||+|+.++.++.-.+ ...-. .++.......+....++ +........+ ...+.+++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl---lr~~i~~~t~lg~~i~~----~i~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAI---FREHIGGGTELGKKAKE----YIDRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchh---hhhhccCCChHHHHHHH----HHhccCcchHHHHHHHHHHHHhc
Confidence 378899999999999999998764222 11111 11111110122222222 2222332222 5667777743
Q ss_pred C-CcEEEEecC-CChHHHHHH
Q 041079 236 M-KVLIVFDDV-TCFRQIKSL 254 (945)
Q Consensus 236 k-r~LlVLDdv-~~~~~l~~l 254 (945)
. .-=+|||+. .+.+|.+.|
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 2 456899998 445555544
No 458
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.95 E-value=0.088 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..|.|+|++|.||||+|+.+++++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998863
No 459
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.94 E-value=0.13 Score=58.41 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.3
Q ss_pred CccchHHHHHHHHhhhc--------------c----cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 140 QLVGVESRVVAIQSLLG--------------A----APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~--------------~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
.+||.+..++.+...+. . ...|.++|++|+|||++|+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 46777777776644331 1 35689999999999999999998764433
No 460
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.91 E-value=0.15 Score=51.72 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=25.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN 194 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 194 (945)
.|+|+|-||+||||+|..++.++..+=...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977766544323334333
No 461
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=92.89 E-value=0.43 Score=54.48 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=49.6
Q ss_pred cCEEEEEecCCCcHHHHHHH-HHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIARA-IFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~-v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|-.|+||||||.. +.++ ..-+..|.+..+.+.. ..+..+.+.+...-..... ...+
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q--~~~dv~cV~~~IGer~---rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ--KGQNVICVYVAIGQKA---SSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc--ccCCeEEEEEEecCCc---hHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 67899999999999999754 4444 2445565555565433 2344444444432111111 0011
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++++|+|+||+....
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 11122222 5899999999996543
No 462
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.56 Score=54.55 Aligned_cols=167 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccC
Q 041079 139 NQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSG 203 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 203 (945)
..+-|....+..+...... .+-+..+|++|.|||-+|++|+++.. ..+|..+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~p------- 252 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGP------- 252 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccH-------
Confidence 3455666666666554322 67889999999999999999999765 333443322
Q ss_pred CHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCC-CcEEEEecCCChH------------HHHHHhcCCCCCCCCCeEE-
Q 041079 204 GLACLRQELLSKLLKHENVILD-IDLNFRRLSRM-KVLIVFDDVTCFR------------QIKSLIRSPDWFMADSRII- 268 (945)
Q Consensus 204 ~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~k-r~LlVLDdv~~~~------------~l~~l~~~~~~~~~gs~II- 268 (945)
++++...++.. .. ...+.+..+.+ +.+|.+|+++..- ....+..-.++.++.+++|
T Consensus 253 -------eli~k~~gEte--~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv 323 (693)
T KOG0730|consen 253 -------ELISKFPGETE--SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIV 323 (693)
T ss_pred -------HHHHhcccchH--HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEE
Confidence 12222222111 11 33444555666 8888888874321 1223333344445445444
Q ss_pred -EEecCccccc----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 269 -ITTRNKQVLR----NCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 269 -iTTR~~~v~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
-|||...-+. .-..+....+.-.+..+-.+++..+.-+-...+ ......++..+.|.
T Consensus 324 l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~---~~~l~~iA~~thGy 385 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLS---DVDLEDIAVSTHGY 385 (693)
T ss_pred EEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcc---hhhHHHHHHHccch
Confidence 3555543221 112455677777777777777776653333331 12234455555554
No 463
>PRK09354 recA recombinase A; Provisional
Probab=92.89 E-value=0.16 Score=55.77 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=35.0
Q ss_pred HHHHhhhc-c----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 149 VAIQSLLG-A----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 149 ~~l~~~L~-~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..|..+|. . .+++-|+|++|+||||||.+++......-..++|++
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34445555 3 678999999999999999999877666666778875
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.88 E-value=0.5 Score=58.20 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.+++.|.|.+|.||||+++.+...+...
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 5789999999999999999998766554
No 465
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.84 E-value=0.21 Score=58.15 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccC
Q 041079 146 SRVVAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVIL 224 (945)
Q Consensus 146 ~~l~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~ 224 (945)
..++.+..++.. ..+|.|.|+.|.||||+..++.+.+...-..++-+.+-.+..- .+. .+..-......
T Consensus 229 ~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v~~~~g~ 298 (486)
T TIGR02533 229 ELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQVNPKIGL 298 (486)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEEccccCc
Confidence 345566666655 6799999999999999999888876543233444432211110 111 01100111112
Q ss_pred C-HHHHHHHHcCCCcEEEEecCCChHHHHHHh
Q 041079 225 D-IDLNFRRLSRMKVLIVFDDVTCFRQIKSLI 255 (945)
Q Consensus 225 ~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~ 255 (945)
+ ...++..|+..+=.|++..+.+.+......
T Consensus 299 ~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 299 TFAAGLRAILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 2 678888899999999999999998655444
No 466
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.84 E-value=0.32 Score=54.33 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=57.5
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHH
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFDKISSDFE--GSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRL 233 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L 233 (945)
....|.|.|..|.||||+++++.+.+....+ .++-+.+..+..-. +...+......++. ....+ ...++..|
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~~~q~evg---~~~~~~~~~l~~aL 222 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLPPAQSQIG---RDVDSFANGIRLAL 222 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeecccccccC---CCccCHHHHHHHhh
Confidence 3678899999999999999999987754432 23333322221100 10001000001111 01112 56778889
Q ss_pred cCCCcEEEEecCCChHHHHHHhcC
Q 041079 234 SRMKVLIVFDDVTCFRQIKSLIRS 257 (945)
Q Consensus 234 ~~kr~LlVLDdv~~~~~l~~l~~~ 257 (945)
+..+=.|+++.+.+.+.++..+..
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHHH
Confidence 999999999999999887754433
No 467
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.81 E-value=0.17 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.-+|.|.|.+|+||||+|..+++++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.81 E-value=1.3 Score=43.52 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCcEEEEecCCC----hHHHHHHhcCCCCCCCCCeEEEEecCccccccCCcceEEEcC
Q 041079 226 IDLNFRRLSRMKVLIVFDDVTC----FRQIKSLIRSPDWFMADSRIIITTRNKQVLRNCSVKEIYEMK 289 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv~~----~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (945)
...+.+++.++ =+-|||.-.. ..|++-+....+-...|+.|||.|-++-++ .+....+|++.
T Consensus 137 ~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl-AiP~A~I~~~~ 202 (233)
T COG3910 137 LAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL-AIPGAEIYEIS 202 (233)
T ss_pred HHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe-eCCCcEEEEEe
Confidence 55556666544 4677898543 345444433222224689999999987544 34445577654
No 469
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.80 E-value=0.13 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999988765
No 470
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=92.79 E-value=0.75 Score=51.91 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccc-eEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 141 LVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEG-SCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
..|...-...|.+...+ ...|.+-|.||+||||+|-.++..+...++. +.++. -+ -+...+...+++..
T Consensus 176 ~~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFS------LE-M~~eql~~R~Ls~~ 248 (435)
T COG0305 176 LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFS------LE-MSEEQLVMRLLSSE 248 (435)
T ss_pred CcccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEE------cc-CCHHHHHHHhhccc
Confidence 66666666666666555 7799999999999999999999877666554 34432 22 44556666666554
Q ss_pred hCCCCc-----cCC------HHHHHHHHcCCCcEEEEecCCChH
Q 041079 217 LKHENV-----ILD------IDLNFRRLSRMKVLIVFDDVTCFR 249 (945)
Q Consensus 217 ~~~~~~-----~~~------~~~l~~~L~~kr~LlVLDdv~~~~ 249 (945)
..-... ..+ .......++..+ |.+||.....
T Consensus 249 s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~--i~IdD~~~~s 290 (435)
T COG0305 249 SGIESSKLRTGRLSDDEWERLIKAASELSEAP--IFIDDTPGLT 290 (435)
T ss_pred cccchhccccccccHHHHHHHHHHHHHHhhCC--eeecCCCcCC
Confidence 432211 011 233344556666 7778876543
No 471
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.77 E-value=0.07 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 041079 161 LGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 472
>PRK08840 replicative DNA helicase; Provisional
Probab=92.75 E-value=2.6 Score=48.77 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 141 LVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
+.|...-...|.+.+.+ ..++.|-|.+|+||||+|..++..... +-..+.|+. -+ -....+...+++..
T Consensus 197 ~~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS------lE-Ms~~ql~~Rlla~~ 269 (464)
T PRK08840 197 VTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS------LE-MPAEQLMMRMLASL 269 (464)
T ss_pred CCCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe------cc-CCHHHHHHHHHHhh
Confidence 45555555555555444 789999999999999999988877642 222344443 22 44556777776654
Q ss_pred h
Q 041079 217 L 217 (945)
Q Consensus 217 ~ 217 (945)
.
T Consensus 270 s 270 (464)
T PRK08840 270 S 270 (464)
T ss_pred C
Confidence 4
No 473
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.74 E-value=0.37 Score=54.61 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=49.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC--------
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD-------- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~-------- 225 (945)
...++|.|..|+|||||.+.+++.... + ++.+..+.+... .+..+.+..+..-..... ...+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~~--d-v~V~~liGERgr---Ev~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEV--D-VTVLALIGERGR---EVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCCC--C-EEEEEEEccCcH---HHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 779999999999999999999886543 2 333444544332 233333332221110010 0011
Q ss_pred ----HHHHHHHH--cCCCcEEEEecCCChHH
Q 041079 226 ----IDLNFRRL--SRMKVLIVFDDVTCFRQ 250 (945)
Q Consensus 226 ----~~~l~~~L--~~kr~LlVLDdv~~~~~ 250 (945)
.-.+-+++ +++++|+++||+....+
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~ 266 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFAR 266 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHH
Confidence 12223333 58999999999965543
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.73 E-value=0.16 Score=50.06 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+++|+|..|.|||||++.+...+..+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 5689999999999999999999887653
No 475
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.73 E-value=0.33 Score=52.36 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.1
Q ss_pred CcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecC
Q 041079 237 KVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRN 273 (945)
Q Consensus 237 r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~ 273 (945)
+.+||+|.+.+. .++..++... |+||||+.|---
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~ 387 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDP 387 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCH
Confidence 569999999765 4677777654 799999988653
No 476
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.70 E-value=0.29 Score=50.84 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=28.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..+|||.|.||+|||||.-++...+...=..+..+ .+...|..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl-AVDPSSp~ 71 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL-AVDPSSPF 71 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE-EE-GGGGC
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE-EECCCCCC
Confidence 67999999999999999999998876542233333 34444443
No 477
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.67 E-value=0.17 Score=54.14 Aligned_cols=53 Identities=28% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCCCccchHHHHHH---HHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccce
Q 041079 137 NNNQLVGVESRVVA---IQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGS 189 (945)
Q Consensus 137 ~~~~~vGr~~~l~~---l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 189 (945)
..+.+||.....+. +.+++.. .+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 66889998766553 3444444 78999999999999999999999987665544
No 478
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.64 E-value=0.13 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...|+|+|++|.||||+|+.++.++
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999999999876
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.62 E-value=0.09 Score=54.35 Aligned_cols=23 Identities=22% Similarity=-0.055 Sum_probs=21.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+++.|.|..|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 480
>PRK04182 cytidylate kinase; Provisional
Probab=92.61 E-value=0.097 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+|+|.|+.|.||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998763
No 481
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.60 E-value=0.73 Score=45.97 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=59.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH--HH--HhC-----CCCccCC---
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL--SK--LLK-----HENVILD--- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll--~~--l~~-----~~~~~~~--- 225 (945)
...|-|+|-.|-||||.|..++-+...+=-.+.++.-.... .. .+-....+.+- .- ... ..+...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WS-TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-Cc-cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 57899999999999999999887754443333333222211 01 11122222110 00 000 0000001
Q ss_pred ----HHHHHHHHc-CCCcEEEEecCCC--------hHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 ----IDLNFRRLS-RMKVLIVFDDVTC--------FRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 ----~~~l~~~L~-~kr~LlVLDdv~~--------~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
.+..++.+. ++-=|+|||.+.. .+++-+++... .++..||+|=|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r---p~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR---PGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC---CCCCEEEEECCCCC
Confidence 233344454 4456999999833 33444444433 36779999999763
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.59 E-value=0.087 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 483
>PF13245 AAA_19: Part of AAA domain
Probab=92.58 E-value=0.2 Score=41.99 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=17.9
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHH
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
..+++.|.|.+|.|||+++.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 456788899999999955554444
No 484
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=92.56 E-value=0.49 Score=54.76 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=49.4
Q ss_pred cCEEEEEecCCCcHHHHH-HHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIA-RAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|-.|+|||||| ..+.++. ..+..|.+..+.+.. ..+..+.+.+...-..... ...+
T Consensus 161 GQr~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~IGer~---rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQK--DSDVYCVYVAIGQKA---STVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred CCEEEeecCCCCCccHHHHHHHHhhc--CCCeEEEEEEccCCh---HHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 678999999999999997 4555543 445554444454433 2344455544432111111 0011
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++.+|||+||+....
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A 266 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKHA 266 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHHH
Confidence 11122222 5899999999996554
No 485
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.56 E-value=0.15 Score=55.47 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=42.0
Q ss_pred CCCccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.+.|+|++..++++.+.+.. .+++.+.|+.|.||||||+.+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 45899999999999998866 7899999999999999999998766543
No 486
>PRK05439 pantothenate kinase; Provisional
Probab=92.55 E-value=0.16 Score=55.10 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.-+|||.|.+|+||||+|+.+...+..
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 668999999999999999999886654
No 487
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.54 E-value=1.1 Score=47.65 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
...++++|.+|+||||+++.+...+..+=..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999999999999887654323344443
No 488
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.53 E-value=0.36 Score=51.33 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEec
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENV 195 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 195 (945)
.+++=|+|+.|.||||+|.+++-.....-..++|++..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 78899999999999999999988776666788998743
No 489
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.53 E-value=0.43 Score=54.62 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=51.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc--c-cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC----ccCC-----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD--F-EGSCFLENVREESQRSGGLACLRQELLSKLLKHEN----VILD----- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~--F-~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~----~~~~----- 225 (945)
.+.++|.|-.|+|||||+..++++...+ + +.++.+..+.+.. ..+..+.+++...-..... ...+
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERg---rEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITY---EEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccc---hHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 7889999999999999999998865321 1 2244444454433 3344555554432111111 0011
Q ss_pred -------HHHHHHHH---cCCCcEEEEecCCChH
Q 041079 226 -------IDLNFRRL---SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -------~~~l~~~L---~~kr~LlVLDdv~~~~ 249 (945)
...+-+.+ +++++|+++||+-...
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A 251 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYC 251 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHH
Confidence 22233444 4789999999985543
No 490
>PRK08006 replicative DNA helicase; Provisional
Probab=92.51 E-value=2.9 Score=48.58 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 141 LVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS-DFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
..|...-...|.+.+.. ..+|.|-|.+|+||||+|..++..+.. +-..++|+. -+ -....+...+++..
T Consensus 204 ~~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS------lE-M~~~ql~~Rlla~~ 276 (471)
T PRK08006 204 VTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS------LE-MPGEQIMMRMLASL 276 (471)
T ss_pred CCcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe------cc-CCHHHHHHHHHHHh
Confidence 44555555555554444 779999999999999999999877642 222344543 22 44556666776654
No 491
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.51 E-value=0.36 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|.|+.|.|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 679999999999999999999863
No 492
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=92.51 E-value=0.51 Score=54.64 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=47.9
Q ss_pred cCEEEEEecCCCcHHHHHHH-HHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIARA-IFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~-v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|-.|+|||+||.. +.++. .-+..|.+..+.+... .+..+.+.+...-..... ..++
T Consensus 162 GQr~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~IGer~~---ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~ 236 (502)
T PRK09281 162 GQRELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVAIGQKAS---TVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY 236 (502)
T ss_pred CcEEEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEEecCChH---HHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence 67899999999999999644 44433 3455544444544332 234444444332111111 0011
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++++|+|+||+....
T Consensus 237 ~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 237 LAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 11122222 4899999999996654
No 493
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.50 E-value=0.32 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999998875
No 494
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.49 E-value=0.05 Score=54.81 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041079 160 LLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~ 180 (945)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999983
No 495
>PRK13768 GTPase; Provisional
Probab=92.48 E-value=0.16 Score=53.99 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
.++.|.|.||+||||++..+...+..+-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 4789999999999999999988775543334443
No 496
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.46 E-value=0.15 Score=44.66 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
++.+.|.+|+||||+|..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998765
No 497
>PTZ00494 tuzin-like protein; Provisional
Probab=92.45 E-value=7 Score=43.81 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=90.2
Q ss_pred CCCCccchHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
....+|.|+.+-..+.+.|.. .|++.+.|.-|.||++|.+....+- --..+|++ ++ +.++.+..
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VR-------g~EDtLrs 437 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VG-------GTEDTLRS 437 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ec-------CCcchHHH
Confidence 456799999888888877766 8999999999999999999877642 22455654 32 33344556
Q ss_pred HHHHHhCCCCccC-C-HHHHHH-------HHcCCCcEEEEe--cCCChHHHHHHhcCCCCCCCCCeEEEEecCcccccc-
Q 041079 212 LLSKLLKHENVIL-D-IDLNFR-------RLSRMKVLIVFD--DVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRN- 279 (945)
Q Consensus 212 ll~~l~~~~~~~~-~-~~~l~~-------~L~~kr~LlVLD--dv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~- 279 (945)
+.+.++-...+.. + .+.+.+ ...++.=+||+- +-.+...+-.=.-.+.....-|+|++----+.+-..
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 6666655443332 2 333322 234455555543 333332211101111111245677765443332111
Q ss_pred --CCcceEEEcCCCCHHHHHHHHHHh
Q 041079 280 --CSVKEIYEMKELRDDHALELFSRH 303 (945)
Q Consensus 280 --~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (945)
..--+-|-++.++.++|.+.-.+.
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhcc
Confidence 112347899999999999876554
No 498
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.59 Score=47.76 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+++|+|..|.|||||++.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 67999999999999999999987654
No 499
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.43 E-value=0.37 Score=51.49 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=33.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+++.|.|.+|.|||++|.++..+.....+.++|+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 889999999999999999999998888888888886
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.43 E-value=0.19 Score=46.13 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=25.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 161 LGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 161 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
|.+.|.||+||||+|..++..+..+-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999998766533444443
Done!