Query 041079
Match_columns 945
No_of_seqs 817 out of 5743
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-40 8.6E-45 391.2 28.4 291 142-445 131-472 (549)
2 3jrn_A AT1G72930 protein; TIR 100.0 7.6E-38 2.6E-42 302.6 9.1 130 1-134 46-175 (176)
3 3ozi_A L6TR; plant TIR domain, 100.0 7.4E-37 2.5E-41 299.7 10.1 129 1-131 73-202 (204)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-35 7.2E-40 386.0 18.5 298 133-444 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 8E-36 2.7E-40 355.0 9.5 273 138-437 127-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.7E-33 6E-38 337.7 20.4 331 133-480 119-507 (591)
7 3rgz_A Protein brassinosteroid 99.9 2.2E-26 7.5E-31 284.1 19.0 300 478-777 323-720 (768)
8 4eco_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 276.2 16.7 293 478-773 254-578 (636)
9 3rgz_A Protein brassinosteroid 99.9 5.8E-26 2E-30 280.3 19.0 280 488-775 409-741 (768)
10 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.4E-30 275.6 21.0 237 490-734 441-714 (876)
11 4eco_A Uncharacterized protein 99.9 1.1E-25 3.9E-30 271.4 17.2 235 490-734 199-474 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 2.5E-25 8.4E-30 273.1 20.0 273 495-772 489-817 (876)
13 3v47_A TOLL-like receptor 5B a 99.9 1.6E-25 5.6E-30 259.6 17.5 292 477-777 34-411 (455)
14 3o6n_A APL1; leucine-rich repe 99.9 1.6E-24 5.3E-29 246.0 23.9 272 478-771 50-328 (390)
15 3oja_B Anopheles plasmodium-re 99.9 1.8E-24 6E-29 259.4 23.9 278 478-771 56-355 (597)
16 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-25 9.9E-30 243.8 14.9 226 542-774 71-304 (313)
17 2id5_A Lingo-1, leucine rich r 99.9 2.6E-24 8.8E-29 251.1 22.6 287 477-773 36-332 (477)
18 3v47_A TOLL-like receptor 5B a 99.9 8E-25 2.7E-29 253.8 17.3 275 478-758 59-413 (455)
19 3t6q_A CD180 antigen; protein- 99.9 4.1E-24 1.4E-28 257.3 24.1 147 620-772 257-411 (606)
20 4fmz_A Internalin; leucine ric 99.9 7.9E-24 2.7E-28 236.1 23.1 258 493-772 62-322 (347)
21 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-25 1.1E-29 243.3 10.7 251 497-757 50-308 (313)
22 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.7E-28 252.7 24.3 291 477-774 258-560 (606)
23 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-24 1.5E-28 252.1 19.1 281 477-773 25-411 (520)
24 4fcg_A Uncharacterized protein 99.9 5.9E-24 2E-28 234.8 18.0 220 520-750 80-311 (328)
25 2id5_A Lingo-1, leucine rich r 99.9 1.5E-23 5.3E-28 244.5 22.5 269 477-753 60-333 (477)
26 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 232.0 20.1 215 546-769 80-309 (328)
27 4fmz_A Internalin; leucine ric 99.9 5.8E-23 2E-27 229.1 24.7 256 494-772 41-298 (347)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-23 1.5E-27 245.7 24.9 102 477-583 56-159 (562)
29 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-23 9.8E-28 245.1 22.7 152 614-773 321-480 (520)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-23 4.2E-28 250.0 18.3 290 478-773 55-443 (549)
31 1o6v_A Internalin A; bacterial 99.9 1.7E-22 5.8E-27 234.8 26.8 257 493-771 64-341 (466)
32 1xku_A Decorin; proteoglycan, 99.9 1.2E-22 4E-27 225.0 24.1 260 497-772 31-304 (330)
33 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-23 2.8E-27 235.8 23.7 254 493-776 60-322 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-22 3.4E-27 242.7 23.0 285 477-773 35-440 (562)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-22 4E-27 253.4 24.4 283 478-770 29-390 (844)
36 3o6n_A APL1; leucine-rich repe 99.9 9E-23 3.1E-27 231.5 21.1 263 495-778 43-311 (390)
37 2z63_A TOLL-like receptor 4, v 99.9 5.9E-23 2E-27 245.3 20.3 84 689-772 416-505 (570)
38 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-23 1.5E-27 248.2 19.3 267 493-774 281-558 (606)
39 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-22 7.1E-27 223.1 23.1 259 497-773 33-306 (332)
40 2z81_A CD282 antigen, TOLL-lik 99.9 4.7E-23 1.6E-27 245.0 18.6 281 477-772 78-484 (549)
41 3vq2_A TLR4, TOLL-like recepto 99.9 1E-22 3.5E-27 245.1 21.7 269 497-771 32-360 (606)
42 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-22 4.7E-27 252.8 23.2 290 477-772 8-373 (844)
43 1ziw_A TOLL-like receptor 3; i 99.9 4E-22 1.4E-26 243.4 26.2 285 490-774 322-622 (680)
44 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.6E-27 243.1 21.5 268 495-772 49-335 (597)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-22 6.2E-27 223.7 20.8 261 497-772 54-331 (332)
46 1o6v_A Internalin A; bacterial 99.9 4.2E-22 1.4E-26 231.5 23.2 256 493-773 108-365 (466)
47 1xku_A Decorin; proteoglycan, 99.9 6.7E-22 2.3E-26 218.9 22.4 262 497-771 52-329 (330)
48 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-21 3.7E-26 239.5 26.4 287 478-771 253-594 (680)
49 2z80_A TOLL-like receptor 2, v 99.9 1.2E-22 4E-27 227.2 12.8 256 497-757 52-318 (353)
50 1wwl_A Monocyte differentiatio 99.9 3E-23 1E-27 227.7 5.5 249 492-753 38-309 (312)
51 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-23 1.3E-27 227.4 5.5 244 490-751 27-273 (317)
52 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-20 8.6E-25 215.1 28.9 251 491-772 36-297 (457)
53 2z66_A Variable lymphocyte rec 99.9 2.8E-21 9.7E-26 211.4 18.8 223 521-752 28-260 (306)
54 1jl5_A Outer protein YOPM; leu 99.9 5E-21 1.7E-25 220.7 21.7 248 490-771 27-287 (454)
55 2z63_A TOLL-like receptor 4, v 99.9 1.9E-21 6.4E-26 232.2 18.6 269 498-771 29-357 (570)
56 3zyi_A Leucine-rich repeat-con 99.9 1.1E-20 3.8E-25 218.5 23.7 222 521-752 75-302 (452)
57 2z66_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 219.1 9.7 228 497-730 28-261 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 1.3E-20 4.5E-25 217.2 23.7 223 521-752 64-291 (440)
59 4g8a_A TOLL-like receptor 4; l 99.9 6.1E-21 2.1E-25 230.7 21.0 127 477-605 56-185 (635)
60 1jl5_A Outer protein YOPM; leu 99.9 3.6E-20 1.2E-24 213.6 26.4 239 497-773 131-369 (454)
61 3g06_A SSPH2 (leucine-rich rep 99.8 7.5E-20 2.6E-24 217.4 27.7 250 478-774 45-297 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-22 3.9E-27 223.6 3.0 260 498-775 11-276 (317)
63 1ozn_A Reticulon 4 receptor; N 99.8 5.8E-20 2E-24 198.7 22.9 202 547-754 32-239 (285)
64 3oja_A Leucine-rich immune mol 99.8 9.5E-22 3.2E-26 229.0 9.2 196 542-753 53-250 (487)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.8E-24 214.4 28.4 238 497-778 40-277 (622)
66 2z80_A TOLL-like receptor 2, v 99.8 5.1E-21 1.7E-25 213.9 13.6 270 499-781 33-321 (353)
67 3oja_A Leucine-rich immune mol 99.8 2E-21 7E-26 226.2 9.2 237 495-749 32-271 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-20 7.7E-25 202.0 16.7 203 520-730 31-238 (285)
69 3zyi_A Leucine-rich repeat-con 99.8 6.5E-20 2.2E-24 212.1 20.8 224 497-730 75-303 (452)
70 3zyj_A Leucine-rich repeat-con 99.8 6.2E-20 2.1E-24 211.5 20.0 224 497-730 64-292 (440)
71 2z62_A TOLL-like receptor 4, v 99.8 2.3E-19 8E-24 193.0 19.3 204 547-756 28-240 (276)
72 1wwl_A Monocyte differentiatio 99.8 3.1E-20 1E-24 203.7 9.5 223 499-731 65-310 (312)
73 1h6u_A Internalin H; cell adhe 99.8 6.5E-19 2.2E-23 192.6 18.4 192 544-752 38-229 (308)
74 3rfs_A Internalin B, repeat mo 99.8 4.1E-19 1.4E-23 190.6 16.2 204 545-762 39-244 (272)
75 2xwt_C Thyrotropin receptor; s 99.8 5.4E-19 1.8E-23 185.8 16.1 205 560-773 23-238 (239)
76 1p9a_G Platelet glycoprotein I 99.8 1.8E-18 6E-23 187.3 20.2 174 570-752 31-207 (290)
77 2o6q_A Variable lymphocyte rec 99.8 8.6E-18 3E-22 180.1 22.1 177 570-753 37-218 (270)
78 4g8a_A TOLL-like receptor 4; l 99.8 6.7E-18 2.3E-22 204.0 22.7 158 611-773 414-579 (635)
79 1p9a_G Platelet glycoprotein I 99.8 6.9E-18 2.4E-22 182.6 20.5 201 517-730 6-208 (290)
80 3rfs_A Internalin B, repeat mo 99.8 1.3E-18 4.6E-23 186.5 14.2 215 545-773 17-234 (272)
81 4glp_A Monocyte differentiatio 99.8 1.3E-18 4.3E-23 190.6 14.0 199 546-753 90-307 (310)
82 1h6u_A Internalin H; cell adhe 99.8 5.5E-18 1.9E-22 185.2 17.7 193 564-773 35-229 (308)
83 2z62_A TOLL-like receptor 4, v 99.8 6.5E-18 2.2E-22 181.7 18.0 202 570-777 28-240 (276)
84 2o6q_A Variable lymphocyte rec 99.8 2.4E-17 8.3E-22 176.6 21.7 194 570-773 16-217 (270)
85 2xwt_C Thyrotropin receptor; s 99.8 7.8E-18 2.7E-22 176.9 16.2 194 548-752 32-238 (239)
86 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-20 3.8E-25 219.3 -10.3 39 493-531 24-66 (461)
87 3m19_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 171.0 19.7 177 571-755 15-194 (251)
88 2ast_B S-phase kinase-associat 99.7 4.8E-19 1.6E-23 196.3 2.8 220 547-770 70-302 (336)
89 2ca6_A RAN GTPase-activating p 99.7 2.4E-19 8.3E-24 202.9 0.2 212 543-756 56-319 (386)
90 4glp_A Monocyte differentiatio 99.7 5.4E-18 1.9E-22 185.6 10.5 221 548-773 65-306 (310)
91 3h16_A TIR protein; bacteria T 99.7 2.6E-19 9E-24 173.1 -0.7 79 1-79 57-135 (154)
92 3cvr_A Invasion plasmid antige 99.7 6.6E-17 2.3E-21 189.8 18.3 182 548-759 60-249 (571)
93 1z7x_W Ribonuclease inhibitor; 99.7 2.1E-19 7E-24 208.6 -3.0 281 490-772 106-438 (461)
94 2ast_B S-phase kinase-associat 99.7 1.3E-18 4.5E-23 192.8 1.8 231 521-762 70-315 (336)
95 2ca6_A RAN GTPase-activating p 99.7 8.2E-19 2.8E-23 198.5 -1.0 230 543-773 28-315 (386)
96 1h6t_A Internalin B; cell adhe 99.7 1.2E-16 4.1E-21 173.0 15.5 171 567-753 43-213 (291)
97 4ay9_X Follicle-stimulating ho 99.7 3.2E-16 1.1E-20 174.6 18.1 204 570-779 30-241 (350)
98 1m9s_A Internalin B; cell inva 99.7 7.9E-17 2.7E-21 191.3 13.5 170 568-753 41-210 (605)
99 3m19_A Variable lymphocyte rec 99.7 9.2E-16 3.1E-20 162.3 19.6 175 548-731 15-193 (251)
100 1h6t_A Internalin B; cell adhe 99.7 1.5E-16 5.3E-21 172.1 13.8 174 544-733 43-216 (291)
101 4ay9_X Follicle-stimulating ho 99.7 6.7E-16 2.3E-20 171.9 19.2 214 521-768 30-253 (350)
102 3cvr_A Invasion plasmid antige 99.7 7.4E-16 2.5E-20 180.8 17.2 173 547-740 80-254 (571)
103 3goz_A Leucine-rich repeat-con 99.7 5.8E-18 2E-22 189.7 -1.3 40 493-532 18-62 (362)
104 1m9s_A Internalin B; cell inva 99.7 3.9E-16 1.3E-20 185.3 14.4 175 543-733 39-213 (605)
105 3goz_A Leucine-rich repeat-con 99.6 1.4E-17 4.6E-22 186.6 -2.2 250 502-754 3-298 (362)
106 3ogk_B Coronatine-insensitive 99.6 4.1E-17 1.4E-21 195.5 1.4 277 494-772 217-524 (592)
107 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.9E-20 153.8 12.6 150 567-751 41-192 (197)
108 2o6s_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 152.8 15.0 175 574-763 11-188 (208)
109 1xeu_A Internalin C; cellular 99.6 8.5E-16 2.9E-20 163.6 10.0 170 545-754 17-186 (263)
110 4ezg_A Putative uncharacterize 99.6 1.5E-15 5.2E-20 154.2 11.4 151 545-729 42-193 (197)
111 1dce_A Protein (RAB geranylger 99.6 9.3E-18 3.2E-22 198.1 -6.3 179 567-755 346-548 (567)
112 2qen_A Walker-type ATPase; unk 99.6 1.3E-14 4.5E-19 161.4 18.2 286 137-438 10-349 (350)
113 3ogk_B Coronatine-insensitive 99.6 2.6E-17 8.8E-22 197.3 -4.5 198 569-773 219-448 (592)
114 1xeu_A Internalin C; cellular 99.6 1.7E-15 5.7E-20 161.3 9.8 173 519-734 17-189 (263)
115 3e6j_A Variable lymphocyte rec 99.6 2.3E-14 7.7E-19 149.2 16.4 151 573-754 22-173 (229)
116 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.7E-19 162.8 14.8 171 573-752 21-201 (361)
117 2fna_A Conserved hypothetical 99.6 4.7E-15 1.6E-19 165.5 11.6 280 137-437 11-356 (357)
118 2o6s_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 147.1 13.8 158 548-741 29-190 (208)
119 1dce_A Protein (RAB geranylger 99.6 9.3E-17 3.2E-21 189.5 -4.6 191 545-747 347-567 (567)
120 2v9t_B SLIT homolog 2 protein 99.6 4.1E-14 1.4E-18 146.3 15.7 149 573-729 14-164 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.5 6.6E-14 2.2E-18 144.7 15.1 147 574-729 15-165 (220)
122 1w5s_A Origin recognition comp 99.5 1E-13 3.4E-18 158.1 17.1 276 137-423 20-371 (412)
123 2p1m_B Transport inhibitor res 99.5 2.7E-16 9.3E-21 188.4 -5.7 204 569-773 288-518 (594)
124 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6.2E-18 141.4 15.6 148 596-752 14-164 (220)
125 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.7E-18 141.7 15.2 150 595-753 13-166 (220)
126 2p1m_B Transport inhibitor res 99.5 3.2E-16 1.1E-20 187.9 -7.3 271 494-770 102-441 (594)
127 2qby_B CDC6 homolog 3, cell di 99.5 2.4E-12 8.3E-17 145.1 25.1 267 138-423 19-339 (384)
128 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.8E-19 177.3 3.2 110 565-676 219-328 (727)
129 2xot_A Amphoterin-induced prot 99.5 3.6E-13 1.2E-17 150.5 14.7 169 595-773 20-201 (361)
130 3e6j_A Variable lymphocyte rec 99.5 8.7E-13 3E-17 137.2 16.3 148 550-730 22-172 (229)
131 4b8c_D Glucose-repressible alc 99.4 2.8E-14 9.5E-19 173.7 5.6 114 609-730 216-329 (727)
132 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 4.6E-18 135.8 9.1 78 570-649 24-103 (168)
133 2ell_A Acidic leucine-rich nuc 99.4 2.4E-13 8.3E-18 134.0 10.2 128 617-751 24-158 (168)
134 3ub2_A TOLL/interleukin-1 rece 99.4 5.6E-15 1.9E-19 140.3 -1.9 94 1-97 48-145 (146)
135 2qby_A CDC6 homolog 1, cell di 99.4 9.5E-12 3.2E-16 140.2 21.7 305 137-469 18-380 (386)
136 2je0_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 129.4 7.6 126 593-749 17-149 (149)
137 2v1u_A Cell division control p 99.4 2.3E-11 7.8E-16 137.1 22.5 239 137-390 17-305 (387)
138 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.6E-16 125.1 13.3 126 573-730 13-139 (193)
139 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.8E-17 125.1 6.8 124 547-671 17-147 (149)
140 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.9E-16 124.1 12.5 126 573-730 11-139 (192)
141 1a9n_A U2A', U2A'; complex (nu 99.3 4.3E-12 1.5E-16 126.1 8.0 130 589-751 15-151 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 126.7 7.1 126 546-675 18-151 (176)
143 2o6r_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 117.5 14.5 55 572-629 9-64 (177)
144 2wfh_A SLIT homolog 2 protein 99.2 4.8E-11 1.7E-15 120.3 13.6 124 550-675 13-137 (193)
145 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 121.0 12.7 123 550-675 11-137 (192)
146 1fnn_A CDC6P, cell division co 99.2 3.6E-10 1.2E-14 127.3 20.6 296 137-444 15-387 (389)
147 2o6r_A Variable lymphocyte rec 99.2 9.7E-11 3.3E-15 116.3 13.8 130 595-756 9-140 (177)
148 1njg_A DNA polymerase III subu 99.2 1.6E-10 5.4E-15 120.8 15.4 181 137-337 21-229 (250)
149 1ds9_A Outer arm dynein; leuci 99.2 2.2E-13 7.5E-18 138.3 -8.4 124 613-746 44-180 (198)
150 3sb4_A Hypothetical leucine ri 99.1 3.2E-11 1.1E-15 132.8 7.2 97 496-602 48-157 (329)
151 1fyx_A TOLL-like receptor 2; b 99.1 6.9E-12 2.4E-16 119.8 -0.4 65 1-65 44-110 (149)
152 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.5E-17 131.9 -5.3 135 493-634 14-157 (198)
153 2j67_A TOLL like receptor 10; 99.1 2.3E-11 7.8E-16 119.3 1.2 60 1-60 74-134 (178)
154 2chg_A Replication factor C sm 99.1 2.3E-09 7.9E-14 110.2 16.2 181 137-334 15-202 (226)
155 1t3g_A X-linked interleukin-1 99.0 9.8E-11 3.4E-15 112.8 4.8 63 1-63 51-115 (159)
156 3sb4_A Hypothetical leucine ri 99.0 2.9E-10 9.9E-15 125.1 9.1 240 519-768 23-304 (329)
157 2r9u_A Variable lymphocyte rec 99.0 9E-10 3.1E-14 108.8 11.5 44 691-734 78-122 (174)
158 2js7_A Myeloid differentiation 99.0 2.4E-11 8.2E-16 117.2 -0.2 62 1-62 54-117 (160)
159 3g39_A Variable lymphocyte rec 99.0 2.6E-09 8.8E-14 105.1 11.5 65 689-753 49-115 (170)
160 3g39_A Variable lymphocyte rec 99.0 2.3E-09 8E-14 105.4 11.2 102 572-675 11-113 (170)
161 4fdw_A Leucine rich hypothetic 99.0 2.8E-08 9.4E-13 111.9 21.5 240 495-752 111-357 (401)
162 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 105.7 11.3 100 573-674 15-115 (174)
163 4fdw_A Leucine rich hypothetic 98.9 2.8E-08 9.6E-13 111.8 19.4 244 486-750 125-380 (401)
164 1sxj_B Activator 1 37 kDa subu 98.9 1.1E-08 3.7E-13 112.0 13.4 182 137-336 19-210 (323)
165 1hqc_A RUVB; extended AAA-ATPa 98.8 2.3E-07 7.8E-12 101.5 19.5 244 137-423 10-298 (324)
166 3un9_A NLR family member X1; l 98.7 3.9E-10 1.3E-14 125.7 -5.1 39 692-730 209-252 (372)
167 1iqp_A RFCS; clamp loader, ext 98.7 6.3E-08 2.2E-12 106.0 12.3 180 137-334 23-210 (327)
168 3un9_A NLR family member X1; l 98.7 6.2E-10 2.1E-14 124.1 -4.1 164 569-753 71-252 (372)
169 2ifg_A High affinity nerve gro 98.7 4E-08 1.4E-12 108.7 9.7 92 632-730 23-116 (347)
170 2ifg_A High affinity nerve gro 98.6 5.3E-08 1.8E-12 107.7 10.0 99 575-675 13-114 (347)
171 4fs7_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 97.8 19.8 253 485-749 59-352 (394)
172 2chq_A Replication factor C sm 98.6 3.6E-07 1.2E-11 99.6 14.1 178 137-333 15-201 (319)
173 1jr3_A DNA polymerase III subu 98.6 7E-07 2.4E-11 99.7 16.7 188 137-336 14-221 (373)
174 1jbk_A CLPB protein; beta barr 98.5 4.9E-07 1.7E-11 90.2 12.8 48 137-184 20-69 (195)
175 1sxj_A Activator 1 95 kDa subu 98.5 8.3E-07 2.8E-11 103.3 14.3 182 137-335 37-252 (516)
176 3h4m_A Proteasome-activating n 98.5 2E-06 7E-11 92.0 16.3 168 137-328 15-222 (285)
177 2ra8_A Uncharacterized protein 98.5 5.4E-08 1.8E-12 107.5 3.9 61 692-752 250-319 (362)
178 3d8b_A Fidgetin-like protein 1 98.4 4.6E-06 1.6E-10 92.2 18.7 198 113-336 62-295 (357)
179 2ra8_A Uncharacterized protein 98.4 4.8E-08 1.6E-12 107.9 2.2 186 543-751 135-341 (362)
180 3te6_A Regulatory protein SIR3 98.4 1.9E-06 6.6E-11 92.4 14.3 158 140-305 21-212 (318)
181 2qz4_A Paraplegin; AAA+, SPG7, 98.4 6.6E-06 2.3E-10 86.7 18.3 174 137-330 4-215 (262)
182 3b9p_A CG5977-PA, isoform A; A 98.4 7.2E-06 2.5E-10 88.3 18.7 194 121-336 3-233 (297)
183 3bos_A Putative DNA replicatio 98.4 5E-07 1.7E-11 93.9 8.4 171 137-335 26-216 (242)
184 3pfi_A Holliday junction ATP-d 98.4 1.5E-05 5.3E-10 87.4 20.5 255 137-433 27-324 (338)
185 2z4s_A Chromosomal replication 98.3 1.8E-06 6E-11 98.3 12.2 175 139-332 105-302 (440)
186 1d2n_A N-ethylmaleimide-sensit 98.3 6.2E-06 2.1E-10 87.5 15.7 165 139-328 33-229 (272)
187 1sxj_D Activator 1 41 kDa subu 98.3 3.1E-06 1.1E-10 93.6 12.6 191 137-334 35-233 (353)
188 2qp9_X Vacuolar protein sortin 98.3 1.7E-05 5.8E-10 87.5 18.0 178 137-336 49-261 (355)
189 3eie_A Vacuolar protein sortin 98.3 1.5E-05 5.2E-10 86.7 16.9 170 137-328 16-219 (322)
190 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.4E-05 1.1E-09 83.9 18.7 178 137-336 10-223 (322)
191 3pvs_A Replication-associated 98.2 6.8E-06 2.3E-10 93.2 13.6 173 137-333 24-212 (447)
192 1sxj_E Activator 1 40 kDa subu 98.2 7E-06 2.4E-10 90.8 13.2 192 137-332 12-233 (354)
193 3syl_A Protein CBBX; photosynt 98.2 1.5E-05 5.1E-10 86.3 15.3 145 140-306 32-219 (309)
194 2zan_A Vacuolar protein sortin 98.2 2.3E-05 7.8E-10 89.2 17.2 190 125-335 120-344 (444)
195 2p65_A Hypothetical protein PF 98.2 1E-05 3.5E-10 80.0 12.6 48 137-184 20-69 (187)
196 3vfd_A Spastin; ATPase, microt 98.2 2.7E-05 9.2E-10 87.2 17.3 177 137-335 113-325 (389)
197 3u61_B DNA polymerase accessor 98.2 2.1E-05 7.3E-10 85.7 15.5 173 137-331 24-211 (324)
198 4gt6_A Cell surface protein; l 98.1 9.9E-05 3.4E-09 82.8 20.6 81 660-749 261-343 (394)
199 3uk6_A RUVB-like 2; hexameric 98.1 5.2E-05 1.8E-09 84.2 17.5 192 138-334 43-301 (368)
200 1l8q_A Chromosomal replication 98.1 2E-05 6.9E-10 85.9 13.8 172 138-330 10-202 (324)
201 4gt6_A Cell surface protein; l 98.1 0.00031 1E-08 78.8 23.1 249 485-749 51-320 (394)
202 4fs7_A Uncharacterized protein 98.0 4.6E-05 1.6E-09 85.6 15.0 232 516-777 157-393 (394)
203 3cf0_A Transitional endoplasmi 98.0 0.00012 4.2E-09 78.6 17.1 149 137-305 13-200 (301)
204 1a5t_A Delta prime, HOLB; zinc 98.0 8.5E-05 2.9E-09 81.2 15.2 170 145-336 8-205 (334)
205 4b4t_J 26S protease regulatory 98.0 0.0001 3.4E-09 81.1 15.5 169 137-329 146-354 (405)
206 4b4t_L 26S protease subunit RP 97.9 0.00032 1.1E-08 78.4 18.2 168 137-328 179-386 (437)
207 3ec2_A DNA replication protein 97.9 3.9E-05 1.3E-09 75.7 9.7 112 144-274 19-143 (180)
208 4b4t_H 26S protease regulatory 97.8 0.0004 1.4E-08 77.4 18.0 167 138-328 208-414 (467)
209 4b4t_M 26S protease regulatory 97.8 0.00011 3.8E-09 82.0 13.6 167 138-328 180-386 (434)
210 1lv7_A FTSH; alpha/beta domain 97.8 0.00017 5.8E-09 75.6 14.1 148 137-304 10-195 (257)
211 1io0_A Tropomodulin; LRR prote 97.8 5.2E-06 1.8E-10 82.5 1.9 120 611-751 30-162 (185)
212 3n70_A Transport activator; si 97.8 6.1E-05 2.1E-09 71.4 8.6 43 140-182 2-48 (145)
213 3pxg_A Negative regulator of g 97.8 0.00026 8.8E-09 81.1 15.5 145 137-304 178-338 (468)
214 1qvr_A CLPB protein; coiled co 97.7 9.9E-05 3.4E-09 91.3 12.4 48 137-184 168-217 (854)
215 4b4t_I 26S protease regulatory 97.7 0.00066 2.3E-08 74.9 17.2 168 137-328 180-387 (437)
216 3hu3_A Transitional endoplasmi 97.7 0.00017 6E-09 82.5 12.9 149 138-305 203-386 (489)
217 2ce7_A Cell division protein F 97.7 0.00063 2.1E-08 77.2 17.1 170 137-329 14-221 (476)
218 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00031 1E-08 85.9 15.3 150 137-304 184-362 (758)
219 4b4t_K 26S protease regulatory 97.7 0.00034 1.2E-08 78.0 14.2 167 138-328 171-378 (428)
220 1sxj_C Activator 1 40 kDa subu 97.7 0.00017 5.7E-09 79.2 11.5 178 137-331 23-207 (340)
221 4h09_A Hypothetical leucine ri 97.6 0.0023 8E-08 71.0 20.5 104 637-748 213-318 (379)
222 1io0_A Tropomodulin; LRR prote 97.6 7.7E-06 2.6E-10 81.2 -0.0 16 692-707 149-164 (185)
223 3rw6_A Nuclear RNA export fact 97.6 2E-05 7E-10 82.4 3.0 64 693-757 169-237 (267)
224 1in4_A RUVB, holliday junction 97.6 0.0011 3.9E-08 72.1 16.5 168 137-333 23-220 (334)
225 2r62_A Cell division protease 97.6 6.9E-05 2.3E-09 79.2 6.3 149 137-304 9-196 (268)
226 1ofh_A ATP-dependent HSL prote 97.5 0.00026 9E-09 76.3 10.8 45 139-183 15-75 (310)
227 4h09_A Hypothetical leucine ri 97.5 0.0035 1.2E-07 69.6 19.9 125 613-748 213-341 (379)
228 3rw6_A Nuclear RNA export fact 97.5 7.1E-05 2.4E-09 78.2 5.0 82 661-747 167-258 (267)
229 3e4g_A ATP synthase subunit S, 97.5 0.0001 3.6E-09 71.4 5.5 33 695-727 62-95 (176)
230 4fcw_A Chaperone protein CLPB; 97.4 0.00027 9.1E-09 76.3 9.1 54 139-192 17-81 (311)
231 3pxi_A Negative regulator of g 97.4 0.00054 1.8E-08 83.6 12.4 145 137-304 178-338 (758)
232 2x8a_A Nuclear valosin-contain 97.4 0.0032 1.1E-07 66.4 16.4 148 137-304 8-191 (274)
233 2w58_A DNAI, primosome compone 97.4 0.00063 2.2E-08 68.2 10.4 57 137-193 23-89 (202)
234 1ixz_A ATP-dependent metallopr 97.3 0.0051 1.7E-07 64.0 17.4 148 137-304 14-199 (254)
235 1iy2_A ATP-dependent metallopr 97.3 0.0028 9.6E-08 67.1 15.2 148 137-304 38-223 (278)
236 3e4g_A ATP synthase subunit S, 97.3 0.00015 5.1E-09 70.3 4.5 85 664-755 61-154 (176)
237 3m6a_A ATP-dependent protease 97.3 0.0025 8.7E-08 74.1 15.5 154 140-304 82-266 (543)
238 3co5_A Putative two-component 97.3 9.8E-05 3.4E-09 69.7 2.8 45 139-183 4-52 (143)
239 3t15_A Ribulose bisphosphate c 97.2 0.00097 3.3E-08 71.2 10.4 28 158-185 36-63 (293)
240 3cf2_A TER ATPase, transitiona 97.2 0.0014 4.7E-08 78.8 12.6 168 138-329 203-407 (806)
241 2kjq_A DNAA-related protein; s 97.1 0.00056 1.9E-08 64.9 6.6 52 141-193 20-71 (149)
242 2c9o_A RUVB-like 1; hexameric 97.1 0.0031 1.1E-07 71.8 14.2 46 138-183 36-88 (456)
243 2bjv_A PSP operon transcriptio 97.1 0.00028 9.6E-09 74.3 4.9 46 138-183 5-54 (265)
244 3pxi_A Negative regulator of g 97.1 0.00092 3.1E-08 81.6 9.9 146 139-304 491-675 (758)
245 2gno_A DNA polymerase III, gam 97.1 0.0011 3.8E-08 70.9 9.2 144 143-304 1-152 (305)
246 1ojl_A Transcriptional regulat 97.0 0.00052 1.8E-08 73.7 5.6 44 139-182 2-49 (304)
247 2dhr_A FTSH; AAA+ protein, hex 97.0 0.004 1.4E-07 71.1 13.1 145 137-304 29-214 (499)
248 1ypw_A Transitional endoplasmi 96.6 0.0052 1.8E-07 74.9 11.0 147 137-304 202-385 (806)
249 1um8_A ATP-dependent CLP prote 96.6 0.0061 2.1E-07 67.6 10.5 26 158-183 72-97 (376)
250 2qgz_A Helicase loader, putati 96.2 0.0095 3.3E-07 63.8 8.6 56 138-193 123-188 (308)
251 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0055 1.9E-07 74.8 6.7 44 139-182 458-512 (758)
252 2r44_A Uncharacterized protein 95.9 0.0042 1.4E-07 67.5 4.1 48 138-185 26-73 (331)
253 2cvh_A DNA repair and recombin 95.8 0.021 7.1E-07 57.6 8.5 33 158-193 20-52 (220)
254 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.011 3.9E-07 62.6 6.4 24 158-181 123-146 (331)
255 1g5t_A COB(I)alamin adenosyltr 95.7 0.042 1.4E-06 53.9 10.0 113 158-275 28-164 (196)
256 1vma_A Cell division protein F 95.7 0.078 2.7E-06 56.4 12.6 35 158-192 104-138 (306)
257 3rfe_A Platelet glycoprotein I 95.6 0.02 6.9E-07 52.6 6.6 53 698-752 12-67 (130)
258 1qvr_A CLPB protein; coiled co 95.5 0.011 3.8E-07 72.9 6.3 45 140-184 559-614 (854)
259 3ice_A Transcription terminati 95.5 0.007 2.4E-07 65.5 3.8 40 158-197 174-214 (422)
260 1sky_E F1-ATPase, F1-ATP synth 95.5 0.037 1.3E-06 61.9 9.7 40 158-197 151-190 (473)
261 3cf2_A TER ATPase, transitiona 95.4 0.022 7.7E-07 68.4 8.0 147 138-304 476-661 (806)
262 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0065 2.2E-07 59.9 2.8 59 692-750 96-167 (197)
263 1qhx_A CPT, protein (chloramph 95.4 0.0084 2.9E-07 58.4 3.6 25 159-183 4-28 (178)
264 1rz3_A Hypothetical protein rb 95.2 0.025 8.4E-07 56.4 6.5 40 144-183 3-47 (201)
265 3kb2_A SPBC2 prophage-derived 95.0 0.013 4.3E-07 56.6 3.7 25 159-183 2-26 (173)
266 3jvv_A Twitching mobility prot 94.9 0.057 2E-06 58.8 8.9 109 158-276 123-233 (356)
267 3hr8_A Protein RECA; alpha and 94.9 0.16 5.3E-06 55.2 12.2 47 147-193 45-96 (356)
268 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.3E-07 57.8 3.9 26 158-183 25-50 (199)
269 2ck3_D ATP synthase subunit be 94.9 0.12 4.1E-06 57.7 11.3 54 158-215 153-207 (482)
270 3trf_A Shikimate kinase, SK; a 94.9 0.015 5.2E-07 56.9 3.8 26 158-183 5-30 (185)
271 3hws_A ATP-dependent CLP prote 94.8 0.019 6.7E-07 63.1 4.9 43 141-183 17-76 (363)
272 1zu4_A FTSY; GTPase, signal re 94.8 0.064 2.2E-06 57.6 8.6 35 158-192 105-139 (320)
273 3lw7_A Adenylate kinase relate 94.7 0.016 5.4E-07 56.1 3.4 22 159-181 2-23 (179)
274 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.016 5.4E-07 66.2 3.7 45 139-183 22-66 (500)
275 2yvu_A Probable adenylyl-sulfa 94.6 0.031 1E-06 54.9 5.1 28 158-185 13-40 (186)
276 1zuh_A Shikimate kinase; alpha 94.5 0.022 7.5E-07 54.8 3.8 26 158-183 7-32 (168)
277 1pgv_A TMD-1, tropomodulin TMD 94.5 0.017 5.7E-07 57.0 2.9 91 660-751 37-137 (197)
278 2yhs_A FTSY, cell division pro 94.5 0.082 2.8E-06 59.5 8.9 35 158-193 293-327 (503)
279 3sr0_A Adenylate kinase; phosp 94.4 0.06 2E-06 53.8 6.9 85 160-254 2-93 (206)
280 3kl4_A SRP54, signal recogniti 94.4 0.11 3.8E-06 57.8 9.8 35 158-192 97-131 (433)
281 2ga8_A Hypothetical 39.9 kDa p 94.4 0.024 8E-07 61.1 4.1 29 158-186 24-52 (359)
282 1kag_A SKI, shikimate kinase I 94.4 0.02 6.7E-07 55.4 3.1 25 159-183 5-29 (173)
283 3l0o_A Transcription terminati 94.3 0.012 4E-07 63.7 1.5 40 158-197 175-215 (427)
284 2c95_A Adenylate kinase 1; tra 94.3 0.031 1E-06 55.2 4.5 26 157-182 8-33 (196)
285 3c8u_A Fructokinase; YP_612366 94.3 0.035 1.2E-06 55.7 4.9 26 158-183 22-47 (208)
286 1nks_A Adenylate kinase; therm 94.3 0.036 1.2E-06 54.5 5.0 26 159-184 2-27 (194)
287 3iij_A Coilin-interacting nucl 94.3 0.021 7.1E-07 55.7 3.2 25 158-182 11-35 (180)
288 1via_A Shikimate kinase; struc 94.2 0.023 7.7E-07 55.2 3.3 24 160-183 6-29 (175)
289 1j8m_F SRP54, signal recogniti 94.2 0.12 4E-06 54.8 9.0 36 158-193 98-133 (297)
290 3dm5_A SRP54, signal recogniti 94.1 0.17 5.8E-06 56.4 10.4 35 158-192 100-134 (443)
291 4a1f_A DNAB helicase, replicat 94.1 0.071 2.4E-06 57.4 7.2 52 158-216 46-97 (338)
292 1ly1_A Polynucleotide kinase; 94.1 0.025 8.4E-07 55.0 3.3 22 159-180 3-24 (181)
293 2jaq_A Deoxyguanosine kinase; 94.1 0.027 9.2E-07 56.0 3.6 24 160-183 2-25 (205)
294 3t61_A Gluconokinase; PSI-biol 94.1 0.026 8.9E-07 56.2 3.5 25 158-182 18-42 (202)
295 1kht_A Adenylate kinase; phosp 94.1 0.03 1E-06 55.0 3.9 26 159-184 4-29 (192)
296 1jr3_D DNA polymerase III, del 94.1 0.29 9.8E-06 53.1 12.2 154 158-334 18-183 (343)
297 3bh0_A DNAB-like replicative h 94.1 0.11 3.9E-06 55.6 8.7 51 158-215 68-118 (315)
298 2iyv_A Shikimate kinase, SK; t 94.1 0.025 8.7E-07 55.3 3.3 25 159-183 3-27 (184)
299 2rhm_A Putative kinase; P-loop 94.1 0.03 1E-06 55.1 3.8 25 158-182 5-29 (193)
300 3uie_A Adenylyl-sulfate kinase 94.1 0.043 1.5E-06 54.6 5.0 26 158-183 25-50 (200)
301 4eun_A Thermoresistant glucoki 94.0 0.042 1.4E-06 54.6 4.9 25 158-182 29-53 (200)
302 1ex7_A Guanylate kinase; subst 94.0 0.021 7.3E-07 55.9 2.6 29 159-187 2-30 (186)
303 1fx0_B ATP synthase beta chain 94.0 0.094 3.2E-06 58.8 8.0 53 158-214 165-218 (498)
304 1kgd_A CASK, peripheral plasma 94.0 0.026 8.8E-07 55.2 3.1 26 158-183 5-30 (180)
305 1tue_A Replication protein E1; 94.0 0.041 1.4E-06 54.2 4.5 41 144-184 41-84 (212)
306 2xxa_A Signal recognition part 94.0 0.14 4.7E-06 57.4 9.4 28 158-185 100-127 (433)
307 1g41_A Heat shock protein HSLU 93.9 0.049 1.7E-06 60.8 5.5 48 139-186 15-78 (444)
308 1zp6_A Hypothetical protein AT 93.8 0.032 1.1E-06 54.9 3.4 24 158-181 9-32 (191)
309 2bwj_A Adenylate kinase 5; pho 93.8 0.037 1.3E-06 54.7 3.9 26 158-183 12-37 (199)
310 1e6c_A Shikimate kinase; phosp 93.7 0.032 1.1E-06 53.9 3.2 25 159-183 3-27 (173)
311 2ze6_A Isopentenyl transferase 93.7 0.033 1.1E-06 57.8 3.5 25 159-183 2-26 (253)
312 2vli_A Antibiotic resistance p 93.6 0.027 9.4E-07 54.9 2.6 26 158-183 5-30 (183)
313 1nn5_A Similar to deoxythymidy 93.6 0.06 2E-06 54.0 5.2 29 158-186 9-37 (215)
314 2px0_A Flagellar biosynthesis 93.6 0.23 7.7E-06 52.6 9.8 27 158-184 105-131 (296)
315 2pt5_A Shikimate kinase, SK; a 93.6 0.043 1.5E-06 52.6 3.8 24 160-183 2-25 (168)
316 1tev_A UMP-CMP kinase; ploop, 93.6 0.039 1.3E-06 54.3 3.6 24 159-182 4-27 (196)
317 1y63_A LMAJ004144AAA protein; 93.6 0.041 1.4E-06 53.9 3.7 24 158-181 10-33 (184)
318 2plr_A DTMP kinase, probable t 93.5 0.062 2.1E-06 53.7 5.1 28 159-186 5-32 (213)
319 3a00_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 54.1 3.5 29 159-187 2-30 (186)
320 2qor_A Guanylate kinase; phosp 93.5 0.035 1.2E-06 55.4 3.1 26 158-183 12-37 (204)
321 1knq_A Gluconate kinase; ALFA/ 93.5 0.043 1.5E-06 53.1 3.7 25 158-182 8-32 (175)
322 2bdt_A BH3686; alpha-beta prot 93.4 0.055 1.9E-06 53.1 4.4 31 159-193 3-33 (189)
323 1g8p_A Magnesium-chelatase 38 93.4 0.036 1.2E-06 60.5 3.3 47 137-183 22-70 (350)
324 3b9q_A Chloroplast SRP recepto 93.4 0.19 6.4E-06 53.4 8.8 35 158-193 100-134 (302)
325 3tau_A Guanylate kinase, GMP k 93.4 0.043 1.5E-06 55.0 3.6 27 158-184 8-34 (208)
326 2cdn_A Adenylate kinase; phosp 93.4 0.048 1.7E-06 54.2 4.0 26 158-183 20-45 (201)
327 1xjc_A MOBB protein homolog; s 93.4 0.078 2.7E-06 50.9 5.2 28 158-185 4-31 (169)
328 3cm0_A Adenylate kinase; ATP-b 93.4 0.044 1.5E-06 53.6 3.6 24 159-182 5-28 (186)
329 2wwf_A Thymidilate kinase, put 93.3 0.053 1.8E-06 54.3 4.1 28 158-185 10-37 (212)
330 1cke_A CK, MSSA, protein (cyti 93.2 0.051 1.7E-06 55.1 3.9 26 158-183 5-30 (227)
331 2pjz_A Hypothetical protein ST 93.2 0.32 1.1E-05 50.5 10.0 25 158-182 30-54 (263)
332 2pbr_A DTMP kinase, thymidylat 93.2 0.051 1.7E-06 53.4 3.8 24 160-183 2-25 (195)
333 2wsm_A Hydrogenase expression/ 93.1 0.1 3.6E-06 52.4 6.1 43 143-185 13-57 (221)
334 3k1j_A LON protease, ATP-depen 93.1 0.072 2.4E-06 62.8 5.5 50 137-186 39-88 (604)
335 2if2_A Dephospho-COA kinase; a 93.1 0.051 1.7E-06 54.1 3.6 22 159-180 2-23 (204)
336 1qf9_A UMP/CMP kinase, protein 93.1 0.051 1.7E-06 53.3 3.6 26 158-183 6-31 (194)
337 2hf9_A Probable hydrogenase ni 93.1 0.12 4E-06 52.2 6.4 39 147-185 25-65 (226)
338 3e70_C DPA, signal recognition 93.1 0.37 1.3E-05 51.7 10.5 28 158-185 129-156 (328)
339 2r6a_A DNAB helicase, replicat 93.0 0.62 2.1E-05 52.6 12.9 36 158-193 203-239 (454)
340 3tlx_A Adenylate kinase 2; str 92.9 0.077 2.6E-06 54.6 4.7 25 158-182 29-53 (243)
341 2og2_A Putative signal recogni 92.9 0.43 1.5E-05 51.8 10.8 35 158-193 157-191 (359)
342 3gmt_A Adenylate kinase; ssgci 92.9 0.33 1.1E-05 48.9 9.2 24 159-182 9-32 (230)
343 1aky_A Adenylate kinase; ATP:A 92.9 0.057 1.9E-06 54.5 3.6 25 159-183 5-29 (220)
344 1ye8_A Protein THEP1, hypothet 92.9 0.064 2.2E-06 52.2 3.8 24 160-183 2-25 (178)
345 3tr0_A Guanylate kinase, GMP k 92.8 0.058 2E-06 53.6 3.6 25 158-182 7-31 (205)
346 2bbw_A Adenylate kinase 4, AK4 92.8 0.062 2.1E-06 55.4 3.9 25 158-182 27-51 (246)
347 1odf_A YGR205W, hypothetical 3 92.8 0.093 3.2E-06 55.4 5.3 27 158-184 31-57 (290)
348 2j41_A Guanylate kinase; GMP, 92.8 0.058 2E-06 53.7 3.6 25 158-182 6-30 (207)
349 3ney_A 55 kDa erythrocyte memb 92.8 0.062 2.1E-06 53.0 3.6 26 158-183 19-44 (197)
350 2qe7_A ATP synthase subunit al 92.8 0.19 6.4E-06 56.4 7.8 87 158-249 162-267 (502)
351 1zd8_A GTP:AMP phosphotransfer 92.8 0.057 2E-06 54.8 3.5 25 158-182 7-31 (227)
352 1ukz_A Uridylate kinase; trans 92.7 0.056 1.9E-06 53.8 3.3 25 158-182 15-39 (203)
353 1gvn_B Zeta; postsegregational 92.7 0.069 2.4E-06 56.4 4.2 25 158-182 33-57 (287)
354 3bgw_A DNAB-like replicative h 92.7 0.43 1.5E-05 53.6 10.9 36 158-193 197-232 (444)
355 2zr9_A Protein RECA, recombina 92.7 0.22 7.7E-06 54.0 8.3 46 148-193 46-96 (349)
356 2grj_A Dephospho-COA kinase; T 92.6 0.065 2.2E-06 52.8 3.6 25 158-182 12-36 (192)
357 1u94_A RECA protein, recombina 92.6 0.22 7.7E-06 54.1 8.1 48 146-193 46-98 (356)
358 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.14 4.7E-06 51.9 6.2 36 158-193 23-58 (235)
359 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.062 2.1E-06 55.9 3.6 25 159-183 5-29 (260)
360 1zak_A Adenylate kinase; ATP:A 92.6 0.06 2E-06 54.5 3.3 26 158-183 5-30 (222)
361 2r9v_A ATP synthase subunit al 92.6 0.18 6.1E-06 56.6 7.3 87 158-249 175-280 (515)
362 3nwj_A ATSK2; P loop, shikimat 92.6 0.07 2.4E-06 55.0 3.8 26 158-183 48-73 (250)
363 1gtv_A TMK, thymidylate kinase 92.5 0.047 1.6E-06 54.7 2.4 26 159-184 1-26 (214)
364 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.07 2.4E-06 57.6 3.8 104 158-274 171-275 (330)
365 3fb4_A Adenylate kinase; psych 92.5 0.07 2.4E-06 53.6 3.7 23 160-182 2-24 (216)
366 3asz_A Uridine kinase; cytidin 92.4 0.078 2.7E-06 53.0 3.9 26 158-183 6-31 (211)
367 2dr3_A UPF0273 protein PH0284; 92.4 0.15 5E-06 52.3 6.1 36 158-193 23-58 (247)
368 2z0h_A DTMP kinase, thymidylat 92.4 0.074 2.5E-06 52.4 3.7 25 160-184 2-26 (197)
369 2ck3_A ATP synthase subunit al 92.4 0.21 7.3E-06 56.1 7.6 88 158-248 162-274 (510)
370 1uj2_A Uridine-cytidine kinase 92.4 0.068 2.3E-06 55.3 3.4 26 158-183 22-47 (252)
371 1n0w_A DNA repair protein RAD5 92.3 0.16 5.5E-06 51.8 6.3 36 158-193 24-65 (243)
372 3umf_A Adenylate kinase; rossm 92.3 0.077 2.6E-06 53.3 3.6 27 156-182 27-53 (217)
373 4gp7_A Metallophosphoesterase; 92.2 0.057 2E-06 52.1 2.5 22 158-179 9-30 (171)
374 1jjv_A Dephospho-COA kinase; P 92.2 0.069 2.4E-06 53.2 3.2 22 159-180 3-24 (206)
375 4a74_A DNA repair and recombin 92.2 0.16 5.6E-06 51.3 6.1 26 158-183 25-50 (231)
376 1uf9_A TT1252 protein; P-loop, 92.2 0.075 2.6E-06 52.7 3.5 24 158-181 8-31 (203)
377 3dl0_A Adenylate kinase; phosp 92.2 0.073 2.5E-06 53.5 3.4 23 160-182 2-24 (216)
378 2v54_A DTMP kinase, thymidylat 92.2 0.071 2.4E-06 52.9 3.3 25 158-182 4-28 (204)
379 2qt1_A Nicotinamide riboside k 92.2 0.074 2.5E-06 53.1 3.4 25 158-182 21-45 (207)
380 2eyu_A Twitching motility prot 92.1 0.12 4.2E-06 53.6 5.1 118 147-275 16-134 (261)
381 1lvg_A Guanylate kinase, GMP k 92.1 0.077 2.6E-06 52.6 3.4 26 158-183 4-29 (198)
382 3rfe_A Platelet glycoprotein I 92.1 0.19 6.6E-06 45.9 5.8 52 574-628 12-66 (130)
383 3e1s_A Exodeoxyribonuclease V, 92.0 0.5 1.7E-05 55.0 10.6 110 146-275 193-317 (574)
384 4e22_A Cytidylate kinase; P-lo 92.0 0.082 2.8E-06 54.7 3.5 26 158-183 27-52 (252)
385 2ewv_A Twitching motility prot 92.0 0.36 1.2E-05 52.9 8.8 107 158-274 136-244 (372)
386 3be4_A Adenylate kinase; malar 91.9 0.092 3.1E-06 52.9 3.7 24 159-182 6-29 (217)
387 1m7g_A Adenylylsulfate kinase; 91.9 0.089 3E-06 52.7 3.6 26 158-183 25-50 (211)
388 2pez_A Bifunctional 3'-phospho 91.8 0.097 3.3E-06 50.8 3.7 27 158-184 5-31 (179)
389 3ake_A Cytidylate kinase; CMP 91.8 0.097 3.3E-06 52.1 3.8 25 159-183 3-27 (208)
390 2p5t_B PEZT; postsegregational 91.8 0.085 2.9E-06 54.6 3.4 26 158-183 32-57 (253)
391 1ak2_A Adenylate kinase isoenz 91.8 0.094 3.2E-06 53.5 3.7 26 158-183 16-41 (233)
392 3tqc_A Pantothenate kinase; bi 91.8 0.13 4.3E-06 55.0 4.8 26 158-183 92-117 (321)
393 3gqb_B V-type ATP synthase bet 91.8 0.23 8E-06 55.0 6.9 26 158-183 147-172 (464)
394 2jeo_A Uridine-cytidine kinase 91.7 0.098 3.4E-06 53.8 3.8 25 158-182 25-49 (245)
395 3fwy_A Light-independent proto 91.7 0.14 4.9E-06 54.6 5.1 36 158-193 48-83 (314)
396 1e4v_A Adenylate kinase; trans 91.7 0.1 3.5E-06 52.3 3.8 23 160-182 2-24 (214)
397 1rj9_A FTSY, signal recognitio 91.7 0.15 5.3E-06 54.1 5.3 35 158-193 102-136 (304)
398 1xp8_A RECA protein, recombina 91.6 0.38 1.3E-05 52.5 8.5 49 145-193 56-109 (366)
399 1tf7_A KAIC; homohexamer, hexa 91.6 0.64 2.2E-05 53.6 10.9 35 158-192 281-315 (525)
400 2xb4_A Adenylate kinase; ATP-b 91.6 0.1 3.5E-06 52.8 3.7 23 160-182 2-24 (223)
401 3upu_A ATP-dependent DNA helic 91.5 0.57 1.9E-05 53.0 10.2 42 146-187 32-74 (459)
402 1cr0_A DNA primase/helicase; R 91.5 0.21 7.2E-06 52.9 6.2 46 148-193 25-71 (296)
403 3r20_A Cytidylate kinase; stru 91.4 0.11 3.7E-06 52.8 3.6 26 158-183 9-34 (233)
404 3d3q_A TRNA delta(2)-isopenten 91.4 0.096 3.3E-06 56.2 3.3 25 159-183 8-32 (340)
405 2q6t_A DNAB replication FORK h 91.4 0.42 1.4E-05 53.9 8.8 52 158-216 200-252 (444)
406 3vr4_D V-type sodium ATPase su 91.4 0.23 7.9E-06 55.1 6.3 88 158-248 151-260 (465)
407 1htw_A HI0065; nucleotide-bind 91.3 0.16 5.5E-06 48.2 4.5 25 158-182 33-57 (158)
408 1fx0_A ATP synthase alpha chai 91.3 0.21 7E-06 56.2 5.9 39 158-198 163-202 (507)
409 2ehv_A Hypothetical protein PH 91.2 0.16 5.6E-06 52.0 4.9 36 158-193 30-66 (251)
410 1np6_A Molybdopterin-guanine d 91.2 0.22 7.6E-06 48.0 5.4 28 158-185 6-33 (174)
411 3aez_A Pantothenate kinase; tr 91.2 0.12 4E-06 55.3 3.7 27 158-184 90-116 (312)
412 1znw_A Guanylate kinase, GMP k 91.1 0.11 3.8E-06 51.8 3.3 26 158-183 20-45 (207)
413 1z6g_A Guanylate kinase; struc 91.1 0.11 3.6E-06 52.5 3.1 25 158-182 23-47 (218)
414 2i3b_A HCR-ntpase, human cance 91.0 0.12 4.1E-06 50.7 3.4 25 159-183 2-26 (189)
415 3crm_A TRNA delta(2)-isopenten 91.0 0.1 3.4E-06 55.7 2.9 25 159-183 6-30 (323)
416 2c61_A A-type ATP synthase non 91.0 0.35 1.2E-05 54.0 7.4 85 158-245 152-258 (469)
417 2j37_W Signal recognition part 91.0 0.24 8.2E-06 56.4 6.2 36 158-193 101-136 (504)
418 2ffh_A Protein (FFH); SRP54, s 90.9 0.5 1.7E-05 52.5 8.6 35 158-192 98-132 (425)
419 3p32_A Probable GTPase RV1496/ 90.9 0.31 1.1E-05 53.1 6.9 35 158-192 79-113 (355)
420 1vht_A Dephospho-COA kinase; s 90.9 0.12 4.2E-06 51.9 3.4 22 159-180 5-26 (218)
421 1puj_A YLQF, conserved hypothe 90.8 1.3 4.3E-05 46.5 11.3 35 8-43 14-48 (282)
422 4hlc_A DTMP kinase, thymidylat 90.8 0.4 1.4E-05 47.6 7.0 30 159-188 3-32 (205)
423 3a8t_A Adenylate isopentenyltr 90.8 0.084 2.9E-06 56.5 2.1 26 158-183 40-65 (339)
424 2f1r_A Molybdopterin-guanine d 90.7 0.1 3.5E-06 50.3 2.4 27 159-185 3-29 (171)
425 2r8r_A Sensor protein; KDPD, P 90.6 0.22 7.4E-06 50.0 4.8 26 160-185 8-33 (228)
426 3end_A Light-independent proto 90.6 0.2 6.9E-06 53.4 5.0 36 158-193 41-76 (307)
427 2f6r_A COA synthase, bifunctio 90.5 0.13 4.6E-06 54.0 3.4 23 158-180 75-97 (281)
428 1s96_A Guanylate kinase, GMP k 90.4 0.15 5.2E-06 51.4 3.5 26 158-183 16-41 (219)
429 3oaa_A ATP synthase subunit al 90.4 0.39 1.3E-05 53.7 7.0 87 158-249 162-267 (513)
430 1cp2_A CP2, nitrogenase iron p 90.4 0.24 8.3E-06 51.5 5.2 35 159-193 2-36 (269)
431 1yrb_A ATP(GTP)binding protein 90.3 0.24 8.3E-06 51.2 5.2 26 158-183 14-39 (262)
432 3exa_A TRNA delta(2)-isopenten 90.1 0.14 4.8E-06 54.0 3.1 24 159-182 4-27 (322)
433 1sq5_A Pantothenate kinase; P- 90.1 0.26 9E-06 52.5 5.3 26 158-183 80-105 (308)
434 1nlf_A Regulatory protein REPA 90.1 0.29 9.8E-06 51.3 5.6 28 157-184 29-56 (279)
435 2p67_A LAO/AO transport system 89.9 0.39 1.3E-05 52.0 6.5 28 158-185 56-83 (341)
436 1ls1_A Signal recognition part 89.9 0.26 8.8E-06 52.2 4.9 28 158-185 98-125 (295)
437 3foz_A TRNA delta(2)-isopenten 89.8 0.17 5.7E-06 53.4 3.3 25 158-182 10-34 (316)
438 1ltq_A Polynucleotide kinase; 89.8 0.16 5.6E-06 53.9 3.4 23 159-181 3-25 (301)
439 3lnc_A Guanylate kinase, GMP k 89.8 0.12 4E-06 52.7 2.1 25 158-182 27-52 (231)
440 2z43_A DNA repair and recombin 89.8 0.39 1.3E-05 51.6 6.4 36 158-193 107-148 (324)
441 2orw_A Thymidine kinase; TMTK, 89.7 0.32 1.1E-05 47.4 5.1 25 159-183 4-28 (184)
442 3hjn_A DTMP kinase, thymidylat 89.6 0.66 2.3E-05 45.7 7.4 33 160-192 2-34 (197)
443 2j9r_A Thymidine kinase; TK1, 89.6 0.63 2.1E-05 46.2 7.1 108 158-275 28-139 (214)
444 2oze_A ORF delta'; para, walke 89.5 0.35 1.2E-05 51.2 5.7 47 147-193 22-72 (298)
445 1svm_A Large T antigen; AAA+ f 89.5 0.28 9.6E-06 53.7 5.0 25 158-182 169-193 (377)
446 2zts_A Putative uncharacterize 89.4 0.38 1.3E-05 49.2 5.8 36 158-193 30-66 (251)
447 1pzn_A RAD51, DNA repair and r 89.4 0.38 1.3E-05 52.2 5.9 25 158-182 131-155 (349)
448 1q3t_A Cytidylate kinase; nucl 89.4 0.22 7.6E-06 50.7 3.9 25 158-182 16-40 (236)
449 1a7j_A Phosphoribulokinase; tr 89.3 0.13 4.3E-06 54.5 2.0 26 158-183 5-30 (290)
450 2afh_E Nitrogenase iron protei 89.3 0.31 1.1E-05 51.4 5.0 35 159-193 3-37 (289)
451 3cnl_A YLQF, putative uncharac 89.2 0.87 3E-05 47.1 8.3 29 7-35 11-39 (262)
452 4eaq_A DTMP kinase, thymidylat 89.2 0.23 7.7E-06 50.5 3.7 27 158-184 26-52 (229)
453 2ged_A SR-beta, signal recogni 89.2 0.35 1.2E-05 47.1 5.1 24 158-181 48-71 (193)
454 1ypw_A Transitional endoplasmi 89.0 0.2 6.9E-06 60.9 3.8 50 137-186 475-539 (806)
455 1oix_A RAS-related protein RAB 89.0 0.23 7.8E-06 48.7 3.5 24 158-181 29-52 (191)
456 3fdi_A Uncharacterized protein 89.0 0.25 8.6E-06 49.0 3.9 26 158-183 6-31 (201)
457 2v3c_C SRP54, signal recogniti 88.9 0.18 6.2E-06 56.4 3.0 35 158-192 99-133 (432)
458 2v9p_A Replication protein E1; 88.9 0.32 1.1E-05 51.5 4.7 27 156-182 124-150 (305)
459 2axn_A 6-phosphofructo-2-kinas 88.8 0.32 1.1E-05 55.9 5.1 29 158-186 35-63 (520)
460 2onk_A Molybdate/tungstate ABC 88.7 0.23 7.8E-06 50.8 3.4 24 159-182 25-48 (240)
461 3b85_A Phosphate starvation-in 88.7 0.19 6.6E-06 50.1 2.7 25 157-181 21-45 (208)
462 2pcj_A ABC transporter, lipopr 88.7 0.2 7E-06 50.6 3.0 24 158-181 30-53 (224)
463 2qm8_A GTPase/ATPase; G protei 88.7 0.5 1.7E-05 51.0 6.2 27 158-184 55-81 (337)
464 2qmh_A HPR kinase/phosphorylas 88.7 0.17 5.8E-06 49.6 2.2 25 158-182 34-58 (205)
465 2ocp_A DGK, deoxyguanosine kin 88.6 0.23 8E-06 50.8 3.4 25 159-183 3-27 (241)
466 3f9v_A Minichromosome maintena 88.5 0.16 5.5E-06 59.5 2.4 45 138-182 294-351 (595)
467 3zvl_A Bifunctional polynucleo 88.4 0.19 6.5E-06 56.1 2.7 25 158-182 258-282 (416)
468 3eph_A TRNA isopentenyltransfe 88.4 0.25 8.7E-06 54.1 3.6 25 159-183 3-27 (409)
469 3tif_A Uncharacterized ABC tra 88.3 0.22 7.4E-06 50.8 2.8 25 158-182 31-55 (235)
470 2fz4_A DNA repair protein RAD2 88.2 2.3 7.8E-05 43.1 10.6 41 141-182 92-132 (237)
471 2f9l_A RAB11B, member RAS onco 88.1 0.25 8.5E-06 48.7 3.1 23 159-181 6-28 (199)
472 2qi9_C Vitamin B12 import ATP- 88.1 0.22 7.4E-06 51.3 2.7 33 158-192 26-58 (249)
473 3mfy_A V-type ATP synthase alp 88.0 0.96 3.3E-05 51.2 7.9 48 158-211 227-274 (588)
474 2cbz_A Multidrug resistance-as 88.0 0.23 7.9E-06 50.7 2.8 25 158-182 31-55 (237)
475 2wji_A Ferrous iron transport 87.9 0.28 9.4E-06 46.7 3.2 22 159-180 4-25 (165)
476 4dzz_A Plasmid partitioning pr 87.9 0.38 1.3E-05 47.5 4.4 35 159-193 2-37 (206)
477 2h92_A Cytidylate kinase; ross 87.8 0.27 9.1E-06 49.4 3.2 24 159-182 4-27 (219)
478 1v5w_A DMC1, meiotic recombina 87.8 0.57 1.9E-05 50.7 6.0 36 158-193 122-163 (343)
479 2d2e_A SUFC protein; ABC-ATPas 87.7 0.28 9.7E-06 50.5 3.3 24 158-181 29-52 (250)
480 1u0l_A Probable GTPase ENGC; p 87.7 1.8 6.2E-05 45.7 9.8 24 158-181 169-192 (301)
481 3llm_A ATP-dependent RNA helic 87.6 4.5 0.00016 40.7 12.5 30 150-179 68-97 (235)
482 2ce2_X GTPase HRAS; signaling 87.6 0.3 1E-05 45.8 3.3 22 160-181 5-26 (166)
483 3gfo_A Cobalt import ATP-bindi 87.5 0.24 8.3E-06 51.7 2.7 24 158-181 34-57 (275)
484 2dyk_A GTP-binding protein; GT 87.5 0.31 1.1E-05 45.7 3.3 23 159-181 2-24 (161)
485 1b0u_A Histidine permease; ABC 87.5 0.25 8.6E-06 51.2 2.8 25 158-182 32-56 (262)
486 1sgw_A Putative ABC transporte 87.5 0.23 7.8E-06 49.8 2.4 25 158-182 35-59 (214)
487 1g8f_A Sulfate adenylyltransfe 87.5 0.51 1.8E-05 53.6 5.5 43 142-184 375-421 (511)
488 1bif_A 6-phosphofructo-2-kinas 87.5 0.44 1.5E-05 54.1 5.1 30 158-187 39-68 (469)
489 3vr4_A V-type sodium ATPase ca 87.4 1.3 4.5E-05 50.3 8.6 37 158-197 232-268 (600)
490 3io5_A Recombination and repai 87.4 0.45 1.6E-05 50.2 4.6 35 159-193 29-65 (333)
491 4g1u_C Hemin import ATP-bindin 87.4 0.26 8.9E-06 51.3 2.8 34 158-192 37-70 (266)
492 1ji0_A ABC transporter; ATP bi 87.4 0.26 9E-06 50.4 2.8 24 158-181 32-55 (240)
493 2zu0_C Probable ATP-dependent 87.3 0.3 1E-05 50.8 3.3 24 158-181 46-69 (267)
494 1u0j_A DNA replication protein 87.3 0.5 1.7E-05 48.7 4.8 35 148-182 90-128 (267)
495 2zej_A Dardarin, leucine-rich 87.3 0.27 9.2E-06 47.7 2.8 21 160-180 4-24 (184)
496 2pze_A Cystic fibrosis transme 87.3 0.27 9.2E-06 49.9 2.8 25 158-182 34-58 (229)
497 2olj_A Amino acid ABC transpor 87.3 0.27 9.1E-06 51.1 2.8 25 158-182 50-74 (263)
498 2b8t_A Thymidine kinase; deoxy 87.2 0.51 1.8E-05 47.4 4.8 107 158-275 12-127 (223)
499 4edh_A DTMP kinase, thymidylat 87.2 0.54 1.9E-05 47.0 5.0 28 158-185 6-33 (213)
500 3kjh_A CO dehydrogenase/acetyl 87.1 0.41 1.4E-05 48.9 4.2 34 160-193 2-35 (254)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.5e-40 Score=391.23 Aligned_cols=291 Identities=17% Similarity=0.168 Sum_probs=235.7
Q ss_pred cchHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHH----HhhccccceEEEEechhhhhccCCHHHHHHHH
Q 041079 142 VGVESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFD----KISSDFEGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
+||+.++++|.++|.. .++|+|+|||||||||||+++|+ +++.+|+.++|+. +++... .+...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 5999999999999854 68999999999999999999997 6889999999994 433211 3678899999
Q ss_pred HHHHhCCCC--c---cC--C----HHHHHHHHcCC-CcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccccccC
Q 041079 213 LSKLLKHEN--V---IL--D----IDLNFRRLSRM-KVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLRNC 280 (945)
Q Consensus 213 l~~l~~~~~--~---~~--~----~~~l~~~L~~k-r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 280 (945)
+.++..... . .. + ...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999876532 1 11 1 57788899996 999999999999876 3332 2799999999999998887
Q ss_pred C-cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHHHHHHHHH-HHhcc
Q 041079 281 S-VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEVWESAINK-LKRFL 358 (945)
Q Consensus 281 ~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~-l~~~~ 358 (945)
+ ...+|+|++|+.+||++||.++||.... .+.+.+++.+|+++|+|+||||+++|+.++.++. +|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 6 4468999999999999999999986543 3677889999999999999999999999988743 33333332 33335
Q ss_pred CcchhhhhhhhccCCChhhHhhhh-----------hhcccCCCCChHHHHHHhhhc--CCCccc-----------chHHH
Q 041079 359 HPSIQEVLKVSYDGLDDNEKNIFL-----------DVACFFKGEDVYPVMKFLDAS--GFYPTT-----------GISVL 414 (945)
Q Consensus 359 ~~~i~~~l~~Sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~~-----------~i~~L 414 (945)
...+..++++||+.|+++.|.||+ +||+||+++.++ +.+|.++ |++... .+++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 677999999999999999999999 999999999888 7889998 776532 48999
Q ss_pred Hhcccceec----CCEEehhHHHHHHHHHHHhhcc
Q 041079 415 VDKSLIAIS----YNKIMMHDLLQELGREIVRQES 445 (945)
Q Consensus 415 ~~~sLi~~~----~~~~~mHdli~~~~~~i~~~e~ 445 (945)
+++||++.. ..+|.|||++|++|++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999976 3479999999999999887764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=7.6e-38 Score=302.60 Aligned_cols=130 Identities=35% Similarity=0.650 Sum_probs=109.4
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCCccccccCchhhHHHHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPSDLRNQSGTFGDSYLKLE 80 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~ 80 (945)
+++|+.|+++|++||++|+++|||||+|||+|+|||+||++|++|+++++++|+||||+|||+|||+|+|+||+||++|+
T Consensus 46 l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~ 125 (176)
T 3jrn_A 46 LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125 (176)
T ss_dssp -------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhHHhHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHhhccccCC
Q 041079 81 ERFKENSKKLQSWRNALKEAAGLSGFYSQNFRPESELIKEVLNQILKRLAEVFP 134 (945)
Q Consensus 81 ~~~~~~~~~~~~w~~aL~~~~~~~g~~~~~~~~e~~~i~~i~~~i~~~l~~~~~ 134 (945)
++ ...+++++||.||++||+++||++ .++|+++|++||++|.++|+.++|
T Consensus 126 ~~--~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 126 SR--EDPEKVLKWRQALTNFAQLSGDCS--GDDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp TT--SCHHHHHHHHHHHHHHTTSCCEEC--CSCHHHHHHHHHHHHHTTCC----
T ss_pred hc--cCHHHHHHHHHHHHHHhcccceec--CCCHHHHHHHHHHHHHHHhcCCCC
Confidence 87 567899999999999999999998 367999999999999999988765
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.4e-37 Score=299.70 Aligned_cols=129 Identities=34% Similarity=0.664 Sum_probs=122.3
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhh-cCCEEEeEeeeecCCccccccCchhhHHHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKRE-YAQIVIPVFYRVDPSDLRNQSGTFGDSYLKL 79 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~-~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~ 79 (945)
+++|+.|.++|++||++|+++|||||+|||+|+|||+||++||+|+++ ++++|+||||+|||++||+|+|+||+||++|
T Consensus 73 l~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~ 152 (204)
T 3ozi_A 73 LLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKH 152 (204)
T ss_dssp TCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHH
Confidence 579999999999999999999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HHHhhhchhhHHhHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHhhccc
Q 041079 80 EERFKENSKKLQSWRNALKEAAGLSGFYSQNFRPESELIKEVLNQILKRLAE 131 (945)
Q Consensus 80 ~~~~~~~~~~~~~w~~aL~~~~~~~g~~~~~~~~e~~~i~~i~~~i~~~l~~ 131 (945)
++++. .+++++||.||++||+++||++.+...|+++|++|+++|+++|+.
T Consensus 153 ~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 153 ANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp TTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 98763 478999999999999999999988889999999999999999864
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-35 Score=385.96 Aligned_cols=298 Identities=22% Similarity=0.303 Sum_probs=236.7
Q ss_pred CCCCCCCCccchHHHHHHHHhhhc----ccCEEEEEecCCCcHHHHHHHHHHH---hhccccceEEEEechhhhhccCCH
Q 041079 133 FPRDNNNQLVGVESRVVAIQSLLG----AAPLLGIWGIGGIGKTIIARAIFDK---ISSDFEGSCFLENVREESQRSGGL 205 (945)
Q Consensus 133 ~~~~~~~~~vGr~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~l 205 (945)
.|. ....||||+.++++|.++|. ..++|+|+||||+||||||+++|++ ...+|...+||..+.+... ...
T Consensus 119 ~p~-~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 195 (1249)
T 3sfz_A 119 VPQ-RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGL 195 (1249)
T ss_dssp CCC-CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHH
T ss_pred CCC-CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHH
Confidence 444 67789999999999999994 2899999999999999999999986 4566877775555544211 233
Q ss_pred HHHHHHHHHHHhCCCCcc----CC----HHHHHHHHcCC--CcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 206 ACLRQELLSKLLKHENVI----LD----IDLNFRRLSRM--KVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 206 ~~l~~~ll~~l~~~~~~~----~~----~~~l~~~L~~k--r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
......++..+....... .+ .+.++..+.++ |+||||||||+.++++.+ ++||+||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 444555666665543211 22 34445555555 999999999999887654 58999999999999
Q ss_pred cccc-CCcceEEEcCC-CCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHHHHHHHHH
Q 041079 276 VLRN-CSVKEIYEMKE-LRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEVWESAINK 353 (945)
Q Consensus 276 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~ 353 (945)
++.. ++....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 45667899996 99999999999988533 234456799999999999999999999998765 579999998
Q ss_pred HHhccC-----------cchhhhhhhhccCCChhhHhhhhhhcccCCCCCh--HHHHHHhhhcCCCcccchHHHHhcccc
Q 041079 354 LKRFLH-----------PSIQEVLKVSYDGLDDNEKNIFLDVACFFKGEDV--YPVMKFLDASGFYPTTGISVLVDKSLI 420 (945)
Q Consensus 354 l~~~~~-----------~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~--~~l~~~~~~~g~~~~~~i~~L~~~sLi 420 (945)
+..... ..+..+|++||+.|++++|.||++||+||.++.+ +.+..+|.+++...+..++.|+++||+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 876442 3488999999999999999999999999998754 568889987776677889999999999
Q ss_pred eec-CC---EEehhHHHHHHHHHHHhhc
Q 041079 421 AIS-YN---KIMMHDLLQELGREIVRQE 444 (945)
Q Consensus 421 ~~~-~~---~~~mHdli~~~~~~i~~~e 444 (945)
+.. .+ +|+||+++|+++++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 33 4999999999999987655
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8e-36 Score=355.04 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=210.9
Q ss_pred CCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHH--HhhccccceEEEEechhhhhccCCHHHHHHHH
Q 041079 138 NNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFD--KISSDFEGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
.+..|||+.++++|.++|.. .++|+|+||||+||||||+++|+ +++.+|+..+||.++++. .+...+...+
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~L 202 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEML 202 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHH
Confidence 34569999999999999865 79999999999999999999997 578899984444445432 4455555555
Q ss_pred HHHHhC---C---CCcc-C----C----HHHHHHHH---cCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 213 LSKLLK---H---ENVI-L----D----IDLNFRRL---SRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 213 l~~l~~---~---~~~~-~----~----~~~l~~~L---~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
+..+.. . .... . + ...+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 553321 1 0000 0 1 34455555 5799999999999999998763 799999999999
Q ss_pred cccccCCcceEEEcC------CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCC--CHHH
Q 041079 275 QVLRNCSVKEIYEMK------ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEK--EKEV 346 (945)
Q Consensus 275 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~--~~~~ 346 (945)
.++..+.....|+|+ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887644333356666 999999999999984 322 22344444 999999999999999876 7788
Q ss_pred HHHHHHHHHhccCcchhhhhhhhccCCChhh-HhhhhhhcccCCCCCh--HHHHHHhhhcCC-CcccchHHHHhccccee
Q 041079 347 WESAINKLKRFLHPSIQEVLKVSYDGLDDNE-KNIFLDVACFFKGEDV--YPVMKFLDASGF-YPTTGISVLVDKSLIAI 422 (945)
Q Consensus 347 w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~g~-~~~~~i~~L~~~sLi~~ 422 (945)
|+.. ....+..+|++||+.|++++ |.||+++|+||.+..+ +.+..+|.+.|. .+...++.|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 35779999999999999999 9999999999998765 558889988753 24567999999999998
Q ss_pred c--CCEEehhHHHHHHH
Q 041079 423 S--YNKIMMHDLLQELG 437 (945)
Q Consensus 423 ~--~~~~~mHdli~~~~ 437 (945)
. .++|+||||+++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 57899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=337.70 Aligned_cols=331 Identities=21% Similarity=0.296 Sum_probs=238.5
Q ss_pred CCCCCCCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh---hcccc-ceEEEEechhhhhccCC
Q 041079 133 FPRDNNNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI---SSDFE-GSCFLENVREESQRSGG 204 (945)
Q Consensus 133 ~~~~~~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~s~~~~~ 204 (945)
.|. ....||||+.++++|.+.|.. .++|+|+||||+||||||++++++. ...|+ .++|+. +..... ..
T Consensus 119 ~P~-~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~--~~ 194 (591)
T 1z6t_A 119 VPQ-RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK--SG 194 (591)
T ss_dssp CCC-CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH--HH
T ss_pred CCC-CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch--HH
Confidence 444 677899999999999999963 7899999999999999999999753 67896 456654 433211 11
Q ss_pred HHHHHHHHHHHHhCCCC----ccCC----HHHHHHHHcC--CCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 205 LACLRQELLSKLLKHEN----VILD----IDLNFRRLSR--MKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 205 l~~l~~~ll~~l~~~~~----~~~~----~~~l~~~L~~--kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
+..-...+...+..... ...+ ...++..+.+ +++||||||||+..+++.+ ++|++||||||++
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 12222223334432111 1122 4455666655 7999999999998876643 5799999999999
Q ss_pred cccccCCcceEEEc---CCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccccCCCHHHHHHHH
Q 041079 275 QVLRNCSVKEIYEM---KELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLFEKEKEVWESAI 351 (945)
Q Consensus 275 ~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l 351 (945)
.++..++ ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 8876653 345555 5899999999999988642 222345789999999999999999999998653 4799888
Q ss_pred HHHHhcc-----------CcchhhhhhhhccCCChhhHhhhhhhcccCCCCCh--HHHHHHhhhcCCCcccchHHHHhcc
Q 041079 352 NKLKRFL-----------HPSIQEVLKVSYDGLDDNEKNIFLDVACFFKGEDV--YPVMKFLDASGFYPTTGISVLVDKS 418 (945)
Q Consensus 352 ~~l~~~~-----------~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~--~~l~~~~~~~g~~~~~~i~~L~~~s 418 (945)
..+.... ...+..++..||+.|++.+|.||+++|+||.+..+ +.+..+|...+......++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 8887543 24688999999999999999999999999987655 5677788765444566799999999
Q ss_pred cceec----CCEEehhHHHHHHHHHHHhhcc--------------------CCCCcccccccchhhhhhhhhccCccccc
Q 041079 419 LIAIS----YNKIMMHDLLQELGREIVRQES--------------------INPRNRSRLWHHEDIYEVLKYNMGTEKIE 474 (945)
Q Consensus 419 Li~~~----~~~~~mHdli~~~~~~i~~~e~--------------------~~~~~~s~l~~~~d~~~~l~~~~~~~~i~ 474 (945)
|+... ..+|.||+++|+++++....+. ..++.+..+|..+.+++++..+... .+.
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~~ 501 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-ELC 501 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HHH
Confidence 99865 2379999999999988732110 1223344556666677766554432 344
Q ss_pred cccccc
Q 041079 475 GICLDM 480 (945)
Q Consensus 475 ~i~l~~ 480 (945)
.+..++
T Consensus 502 ~l~~~~ 507 (591)
T 1z6t_A 502 ALMFSL 507 (591)
T ss_dssp HHHSCH
T ss_pred HHHhCH
Confidence 444443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=2.2e-26 Score=284.12 Aligned_cols=300 Identities=21% Similarity=0.228 Sum_probs=193.1
Q ss_pred cccccceee-ccCchhhccCcCccccccccccCCCCCccccccCc-ceeEEEecCCcCCccCC-----------------
Q 041079 478 LDMSKVKEM-HLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHG-KLKQIIISAGNFFTKTP----------------- 538 (945)
Q Consensus 478 l~~~~~~~~-~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~-~L~~L~Ls~~~~l~~~~----------------- 538 (945)
++++.+... .++...|..+++|+.|++++|.+.+.++..+..++ +|+.|++++|......+
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 334443333 33344466666666666666666555554444444 45555555443221111
Q ss_pred -------CCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCc-ccCccccCCccccEEecccccccccc
Q 041079 539 -------KPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSL 609 (945)
Q Consensus 539 -------~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~l 609 (945)
.+..+.++++|++|+|++|...+.+| .+..+++|++|+|++|.+. .+|..++.+++|++|++++|...+.+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 22345556666667777666555555 4556777777777777766 56666777777777777777766667
Q ss_pred CcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCc-cCCccccCCCCCcEEEcccCCCCccCccc-----
Q 041079 610 PCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASS-EVPSSIVRSNNFRFLSFRESRGDKQMGLS----- 683 (945)
Q Consensus 610 p~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~----- 683 (945)
|..+.++++|++|+|++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|......|..
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 777777777777777777777777777777777777777777754 66777777777777777776543222211
Q ss_pred -----------------------------------------------------------cccccccCCCCCCCEEeccCC
Q 041079 684 -----------------------------------------------------------LLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 684 -----------------------------------------------------------~~~~~~l~~l~~L~~L~L~~~ 704 (945)
...|..+..+++|+.|+|++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 112334555677788888888
Q ss_pred CCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCcccCCcc---cccceEeeccCcccccc
Q 041079 705 GVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSLPELP---CNLILLYADHCTVLKSI 777 (945)
Q Consensus 705 ~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~L~~l 777 (945)
+++ .+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|+..+.+|..+ ++|+.|++++|.--..+
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 777 57777888888888888888877 777778888888888888887777777543 56777777776553333
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3.2e-26 Score=276.19 Aligned_cols=293 Identities=17% Similarity=0.170 Sum_probs=227.2
Q ss_pred cccccceeeccCchhhccCcCcccccccccc-CCC-CCccccccC------cceeEEEecCCcCCccCCCCCCCcccccc
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSS-ING-ENKCKQQHH------GKLKQIIISAGNFFTKTPKPSFIPYLKEL 549 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~-l~~-~~~~~~~~l------~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L 549 (945)
++++.+......+..|.++++|+.|++++|. +.+ .+|..+..+ ++|+.|++++|+.. .+|....+.++++|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 4555554444556778888899999998887 776 666666665 88899999887643 33321157788889
Q ss_pred ceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCcc-ccEEeccccccccccCcccCCCC--CCCEEeccC
Q 041079 550 VILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSG-LVLLHLQACKMLKSLPCSLFKLK--SLEDLNLCR 626 (945)
Q Consensus 550 ~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~-L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~Ls~ 626 (945)
++|+|++|...+.+|.+..+++|++|+|++|.++.+|..+..+++ |++|++++|. +..+|..+..++ +|++|++++
T Consensus 333 ~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred CEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 999999988766788777889999999999999999988999988 9999999988 458888777654 899999999
Q ss_pred CCCCCccCCccC-------CcccCccccccCCCCccCCcccc-CCCCCcEEEcccCCCCccCccccc--cccccCCCCCC
Q 041079 627 CSNLRRFPEEIG-------NVEASNSLYAYGTASSEVPSSIV-RSNNFRFLSFRESRGDKQMGLSLL--ISLSSDGLHSL 696 (945)
Q Consensus 627 ~~~~~~lp~~l~-------~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~l~~L 696 (945)
|...+..|..++ .+.+|++|++++|.+..+|..+. .+++|+.|++++|... .++.... ....+.++++|
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 988888888887 77889999999999888888654 5899999999988754 3222111 00112334489
Q ss_pred CEEeccCCCCCccCcccC--CCCCCCEEECCCCCCcccchhhhCCCCCCEEeec------cCCCCcccCCc---ccccce
Q 041079 697 KSLCLHNCGVTRLPESLG--RLSLLEELDLRRNNFERVPESIIQLSKLNYLYLS------YCQRLQSLPEL---PCNLIL 765 (945)
Q Consensus 697 ~~L~L~~~~l~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~------~c~~l~~lp~l---~~~L~~ 765 (945)
+.|+|++|.++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|+ +|+..+.+|.. .++|+.
T Consensus 491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp CEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred cEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 999999999999998887 8999999999999999999889999999999995 45566777754 367888
Q ss_pred EeeccCcc
Q 041079 766 LYADHCTV 773 (945)
Q Consensus 766 L~~~~c~~ 773 (945)
|++++|..
T Consensus 571 L~Ls~N~l 578 (636)
T 4eco_A 571 LQIGSNDI 578 (636)
T ss_dssp EECCSSCC
T ss_pred EECCCCcC
Confidence 88888764
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.8e-26 Score=280.34 Aligned_cols=280 Identities=20% Similarity=0.206 Sum_probs=182.4
Q ss_pred cCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-Cc
Q 041079 488 LNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EI 566 (945)
Q Consensus 488 l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~ 566 (945)
..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|..... .+..+.++++|++|+|++|...+.+| .+
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--IPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc--CCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 3444555555555555555555555555555555555555555543222 22334455555555555555554444 34
Q ss_pred cCCcccceEeecCCCCc-ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcc
Q 041079 567 SSLSNIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNS 645 (945)
Q Consensus 567 ~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 645 (945)
.++++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++++++|++|++++|...+.+|..+..+..+..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 45555555555555555 45555555555555555555555555555555555555555555555555554444332222
Q ss_pred ccccC----------------------------------------------CC-CccCCccccCCCCCcEEEcccCCCCc
Q 041079 646 LYAYG----------------------------------------------TA-SSEVPSSIVRSNNFRFLSFRESRGDK 678 (945)
Q Consensus 646 L~l~~----------------------------------------------~~-~~~lp~~l~~l~~L~~L~l~~~~~~~ 678 (945)
+.+.. +. .+.+|..+..+++|+.|++++|..
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-- 644 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-- 644 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC--
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc--
Confidence 21111 11 123445566778999999999984
Q ss_pred cCccccccccccCCCCCCCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCccc
Q 041079 679 QMGLSLLISLSSDGLHSLKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSL 756 (945)
Q Consensus 679 ~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~l 756 (945)
...+|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+..+.+
T Consensus 645 ----~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 645 ----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp ----BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred ----cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 3456777889999999999999999 79999999999999999999999 89999999999999999999999999
Q ss_pred CCc--ccccceEeeccCcccc
Q 041079 757 PEL--PCNLILLYADHCTVLK 775 (945)
Q Consensus 757 p~l--~~~L~~L~~~~c~~L~ 775 (945)
|.. +.++..+.+.+++.|-
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEE
T ss_pred CCchhhccCCHHHhcCCchhc
Confidence 974 4455555566666653
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=275.60 Aligned_cols=237 Identities=20% Similarity=0.200 Sum_probs=172.4
Q ss_pred chhhccCcCccccccccccCCC-----------------CCccccc--cCcceeEEEecCCcCCccCCCCCCCccccccc
Q 041079 490 SDTFTKMPKLRFLKFYRSSING-----------------ENKCKQQ--HHGKLKQIIISAGNFFTKTPKPSFIPYLKELV 550 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 550 (945)
+..|.++++|+.|++++|.+.+ .+|..+. ++++|+.|+|++|+....+| ..+.++++|+
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~ 518 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--DFLYDLPELQ 518 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--GGGGGCSSCC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--HHHhCCCCCC
Confidence 4568899999999999999887 2676766 89999999999887766554 5688899999
Q ss_pred eeeecCCC-CCC-CCC-CccCC-------cccceEeecCCCCcccCc--cccCCccccEEeccccccccccCcccCCCCC
Q 041079 551 ILNLRGCK-GLK-KLP-EISSL-------SNIEKIILSGTAIEELPS--SVGCLSGLVLLHLQACKMLKSLPCSLFKLKS 618 (945)
Q Consensus 551 ~L~L~~~~-~l~-~lp-~~~~l-------~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 618 (945)
+|+|++|. ..+ .+| .+..+ ++|++|+|++|.++.+|. .++.+++|+.|+|++|.. ..+| .++++++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-hhcCCCc
Confidence 99999987 444 466 34444 499999999999999998 899999999999999884 4888 7889999
Q ss_pred CCEEeccCCCCCCccCCccCCccc-CccccccCCCCccCCccccCCCC--CcEEEcccCCCCccCccccccccccC--CC
Q 041079 619 LEDLNLCRCSNLRRFPEEIGNVEA-SNSLYAYGTASSEVPSSIVRSNN--FRFLSFRESRGDKQMGLSLLISLSSD--GL 693 (945)
Q Consensus 619 L~~L~Ls~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~lp~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~l~--~l 693 (945)
|++|+|++|... .+|..+.++++ |+.|++++|.+..+|..+..++. |+.|++++|......+. ++..+. .+
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~---l~~~l~~~~~ 672 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN---ISCSMDDYKG 672 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS---CSSCTTTCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc---chhhhccccC
Confidence 999999998766 88888999988 99999999998888888777654 88999888875433221 111111 12
Q ss_pred CCCCEEeccCCCCCccCcccC-CCCCCCEEECCCCCCcccch
Q 041079 694 HSLKSLCLHNCGVTRLPESLG-RLSLLEELDLRRNNFERVPE 734 (945)
Q Consensus 694 ~~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~ 734 (945)
++|+.|+|++|.+..+|..+. .+++|+.|+|++|+++.+|.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 244444444444444444332 34444444444444444443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.1e-25 Score=271.41 Aligned_cols=235 Identities=19% Similarity=0.230 Sum_probs=168.5
Q ss_pred chhhccCcCccccccccccCCCC-----------------Cccccc--cCcceeEEEecCCcCCccCCCCCCCccccccc
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGE-----------------NKCKQQ--HHGKLKQIIISAGNFFTKTPKPSFIPYLKELV 550 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 550 (945)
+..|.++++|+.|++++|.+.+. +|..+. ++++|++|++++|+.....| ..+.++++|+
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~ 276 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEMQ 276 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSCC
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCCC
Confidence 45688889999999998888874 777777 88999999998887665444 5677888888
Q ss_pred eeeecCCC-CCC-CCC-CccCC------cccceEeecCCCCcccCc--cccCCccccEEeccccccccccCcccCCCCCC
Q 041079 551 ILNLRGCK-GLK-KLP-EISSL------SNIEKIILSGTAIEELPS--SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSL 619 (945)
Q Consensus 551 ~L~L~~~~-~l~-~lp-~~~~l------~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 619 (945)
+|+|++|. ..+ .+| .+..+ ++|++|+|++|.++.+|. .++.+++|++|++++|...+.+| .++++++|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 88998887 544 566 45444 888888888888888888 88888888888888888665888 78888888
Q ss_pred CEEeccCCCCCCccCCccCCccc-CccccccCCCCccCCccccCCC--CCcEEEcccCCCCccCccccccccccC-----
Q 041079 620 EDLNLCRCSNLRRFPEEIGNVEA-SNSLYAYGTASSEVPSSIVRSN--NFRFLSFRESRGDKQMGLSLLISLSSD----- 691 (945)
Q Consensus 620 ~~L~Ls~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~l~----- 691 (945)
++|++++|... .+|..++.+++ |++|++++|.+..+|..+..++ +|+.|++++|......+ ..+.
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~l~~~~~~ 428 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG------KNFDPLDPT 428 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT------CSSCTTCSS
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch------hhhcccccc
Confidence 88888887655 78888888888 8888888888888888776654 78888888876533221 1122
Q ss_pred --CCCCCCEEeccCCCCCccCccc-CCCCCCCEEECCCCCCcccch
Q 041079 692 --GLHSLKSLCLHNCGVTRLPESL-GRLSLLEELDLRRNNFERVPE 734 (945)
Q Consensus 692 --~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~ 734 (945)
.+++|+.|+|++|.+..+|..+ ..+++|++|+|++|.++.+|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 3344555555555555444432 234444455554444444443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.5e-25 Score=273.13 Aligned_cols=273 Identities=12% Similarity=0.117 Sum_probs=128.1
Q ss_pred cCcCccccccccccCCCCCccccccCcceeEEEecCCcCCcc--CCCC-----CCCccccccceeeecCCCCCCCCCC--
Q 041079 495 KMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTK--TPKP-----SFIPYLKELVILNLRGCKGLKKLPE-- 565 (945)
Q Consensus 495 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~--~~~~-----~~~~~l~~L~~L~L~~~~~l~~lp~-- 565 (945)
++++|+.|++++|.+.+.+|..+.++++|+.|+|++|+.+.. +|.. ..+..+++|++|+|++|... .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 555555555555555555555555555555555555442221 1100 01112224444455544433 3333
Q ss_pred -ccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCC-CCEEeccCCCCCCccCCccCCcc--
Q 041079 566 -ISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKS-LEDLNLCRCSNLRRFPEEIGNVE-- 641 (945)
Q Consensus 566 -~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~-L~~L~Ls~~~~~~~lp~~l~~l~-- 641 (945)
+.++++|++|+|++|.++.+| .++.+++|+.|+|++|. +..+|..+.++++ |++|+|++|... .+|..+..+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 344445555555555444444 44444455555554444 2244444444444 455554444432 4444443332
Q ss_pred -----------------------------cCccccccCCCCccCCcccc-CCCCCcEEEcccCCCCccCccccc--cccc
Q 041079 642 -----------------------------ASNSLYAYGTASSEVPSSIV-RSNNFRFLSFRESRGDKQMGLSLL--ISLS 689 (945)
Q Consensus 642 -----------------------------~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~--~~~~ 689 (945)
+|+.|++++|.+..+|..+. .+++|+.|++++|... .++.... .+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 45555555555555555443 4555555555555432 1111100 0000
Q ss_pred cCCCCCCCEEeccCCCCCccCcccC--CCCCCCEEECCCCCCcccchhhhCCCCCCEEeecc------CCCCcccCCc--
Q 041079 690 SDGLHSLKSLCLHNCGVTRLPESLG--RLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSY------CQRLQSLPEL-- 759 (945)
Q Consensus 690 l~~l~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~l~~lp~l-- 759 (945)
+.++++|+.|+|++|++..+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |...+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp CTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 1223355666666665555555554 55566666666665555555555566666665544 3334444432
Q ss_pred -ccccceEeeccCc
Q 041079 760 -PCNLILLYADHCT 772 (945)
Q Consensus 760 -~~~L~~L~~~~c~ 772 (945)
.++|+.|++++|.
T Consensus 804 ~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 804 TCPSLIQLQIGSND 817 (876)
T ss_dssp GCSSCCEEECCSSC
T ss_pred cCCCCCEEECCCCC
Confidence 2445555555543
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.6e-25 Score=259.60 Aligned_cols=292 Identities=18% Similarity=0.188 Sum_probs=183.6
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCC-ccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeec
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGEN-KCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLR 555 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 555 (945)
.+|++.+....+.+..|.++++|+.|+++++.+.+.+ +..+..+++|++|+|++|..... .+..+.++++|++|+|+
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLTLT 111 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCEEECT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--ChhhccCcccCCEEeCC
Confidence 3566666666667778888888888888888776433 44677888888888887764332 23456778888888888
Q ss_pred CCCCCCCCC-C--ccCCcccceEeecCCCCccc-Ccc-ccCCccccEEeccccccccccCcccCC---------------
Q 041079 556 GCKGLKKLP-E--ISSLSNIEKIILSGTAIEEL-PSS-VGCLSGLVLLHLQACKMLKSLPCSLFK--------------- 615 (945)
Q Consensus 556 ~~~~l~~lp-~--~~~l~~L~~L~Ls~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~--------------- 615 (945)
+|.....++ . +..+++|++|+|++|.++.+ |.. +..+++|++|++++|...+..|..+..
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 887655433 2 66788888888888888866 444 778888888888888755555544433
Q ss_pred -------------------CCCCCEEeccCCCCCCccCCccCC-------------------------------------
Q 041079 616 -------------------LKSLEDLNLCRCSNLRRFPEEIGN------------------------------------- 639 (945)
Q Consensus 616 -------------------l~~L~~L~Ls~~~~~~~lp~~l~~------------------------------------- 639 (945)
+++|++|++++|...+..|..+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 355666666666554333322211
Q ss_pred --cccCccccccCCCCccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCC
Q 041079 640 --VEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGR 715 (945)
Q Consensus 640 --l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~ 715 (945)
..+|+.|++++|.+..+ |..+..+++|+.|++++|... ...+..+.++++|+.|+|++|.+..+ |..++.
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc------ccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 13555666666655443 445566666666666666532 22334455666666666666666654 445566
Q ss_pred CCCCCEEECCCCCCccc-chhhhCCCCCCEEeeccCCCCcccCC-c---ccccceEeeccCcccccc
Q 041079 716 LSLLEELDLRRNNFERV-PESIIQLSKLNYLYLSYCQRLQSLPE-L---PCNLILLYADHCTVLKSI 777 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~~L~~l 777 (945)
+++|++|+|++|+++.+ |..+..+++|+.|+|++|+... +|. . .++|+.|++++++--...
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCC
Confidence 66666666666666654 4566666666666666665433 332 1 355666666665544333
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-24 Score=246.03 Aligned_cols=272 Identities=14% Similarity=0.129 Sum_probs=167.3
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
++++......+++..|..+++|+.|+++++.+.+..+..+..+++|++|++++|.. ... .+..+.++++|++|+|++|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYL-PPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCC-CTTTTTTCTTCCEEECCSS
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcC-CHHHhcCCCCCCEEECCCC
Confidence 45555555667777888999999999999888877777788899999999988764 322 2345678888999999988
Q ss_pred CCCCCCC-C-ccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccC
Q 041079 558 KGLKKLP-E-ISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP 634 (945)
Q Consensus 558 ~~l~~lp-~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp 634 (945)
... .+| . +.++++|++|+|++|.++.+++ .+..+++|++|++++|. +..++ +..+++|++|++++|...+
T Consensus 128 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSE---
T ss_pred ccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccccc---
Confidence 755 444 4 4678999999999999987754 58888999999999887 44444 4466777777777764332
Q ss_pred CccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-Cccc
Q 041079 635 EEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESL 713 (945)
Q Consensus 635 ~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l 713 (945)
+....+|++|++++|.+..+|... .++|+.|++++|..... ..+..+++|+.|++++|.+..+ |..+
T Consensus 201 --~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 201 --LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp --EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred --cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 122234555555555554444322 24555555555542110 1233444555555555555432 4444
Q ss_pred CCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccC
Q 041079 714 GRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHC 771 (945)
Q Consensus 714 ~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c 771 (945)
..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+. ..+|.. .++|+.|++++|
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSS
T ss_pred cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCC
Confidence 555555555555555555554444455555555555532 233321 244555555444
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-24 Score=259.41 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=169.6
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
++++.+....+++..|..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.. ... .+..+.++++|++|+|++|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYL-PPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCC-CTTTTTTCTTCCEEECCSS
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-CCC-CHHHHcCCCCCCEEEeeCC
Confidence 44555555567777888899999999999988887777888899999999998864 333 3345678889999999998
Q ss_pred CCCCCCCC-ccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCC
Q 041079 558 KGLKKLPE-ISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPE 635 (945)
Q Consensus 558 ~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~ 635 (945)
......+. +.++++|++|+|++|.++.+++ .++.+++|++|+|++|. +..+| ++.+++|++|++++|...+
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLST---- 206 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSE----
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCcccc----
Confidence 75544444 4679999999999999987655 58889999999999887 44444 3456777777777664432
Q ss_pred ccCCcccCccccccCCCCccCCc--------------------cccCCCCCcEEEcccCCCCccCccccccccccCCCCC
Q 041079 636 EIGNVEASNSLYAYGTASSEVPS--------------------SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHS 695 (945)
Q Consensus 636 ~l~~l~~L~~L~l~~~~~~~lp~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 695 (945)
+....+|+.|++++|.+..+|. .+..+++|+.|++++|.. ....|..+..+++
T Consensus 207 -l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~ 279 (597)
T 3oja_B 207 -LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL------EKIMYHPFVKMQR 279 (597)
T ss_dssp -EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC------CEEESGGGTTCSS
T ss_pred -ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc------CCCCHHHhcCccC
Confidence 1223345555555555444433 344444444444444432 1122333444444
Q ss_pred CCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcccccceEeeccC
Q 041079 696 LKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHC 771 (945)
Q Consensus 696 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c 771 (945)
|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+....-+..+++|+.|++++|
T Consensus 280 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 5555555555444444444444555555555554444444444455555555544432222222344444444443
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.9e-25 Score=243.76 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=154.1
Q ss_pred CCccccccceeeecC-CCCCCCCC-CccCCcccceEeecCCCCc-ccCccccCCccccEEeccccccccccCcccCCCCC
Q 041079 542 FIPYLKELVILNLRG-CKGLKKLP-EISSLSNIEKIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKS 618 (945)
Q Consensus 542 ~~~~l~~L~~L~L~~-~~~l~~lp-~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 618 (945)
.+.++++|++|+|++ |.....+| .+.++++|++|+|++|.++ .+|..+..+++|++|+|++|...+.+|..+.++++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 455555666666663 44444455 4556667777777777766 66666777777777777777655566766777777
Q ss_pred CCEEeccCCCCCCccCCccCCcc-cCccccccCCCCc-cCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCC
Q 041079 619 LEDLNLCRCSNLRRFPEEIGNVE-ASNSLYAYGTASS-EVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSL 696 (945)
Q Consensus 619 L~~L~Ls~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 696 (945)
|++|++++|...+.+|..++.+. +|++|++++|.+. .+|..+..++ |+.|++++|.. ....|..+..+++|
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l------~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML------EGDASVLFGSDKNT 223 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE------EECCGGGCCTTSCC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc------cCcCCHHHhcCCCC
Confidence 77777777766666777777766 6777777777654 5666666665 77777777652 22345556677778
Q ss_pred CEEeccCCCCCccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCcccCCc--ccccceEeeccCcc
Q 041079 697 KSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSLPEL--PCNLILLYADHCTV 773 (945)
Q Consensus 697 ~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~ 773 (945)
+.|+|++|.+...++.+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|+..+.+|.. .++|+.|++.+++.
T Consensus 224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 8888888877765555777788888888888877 67777788888888888888777677764 35566666666665
Q ss_pred c
Q 041079 774 L 774 (945)
Q Consensus 774 L 774 (945)
+
T Consensus 304 l 304 (313)
T 1ogq_A 304 L 304 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=251.13 Aligned_cols=287 Identities=21% Similarity=0.193 Sum_probs=226.9
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.+|++.+....+.+..|..+++|+.|++++|.+.+..+..+.++++|+.|+|++|. +..++ ...+.++++|++|+|++
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISE 113 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTT
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCC
Confidence 46677776677778889999999999999998888777788899999999998875 34333 34567888999999999
Q ss_pred CCCCCCCC-CccCCcccceEeecCCCCccc-CccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCCCcc
Q 041079 557 CKGLKKLP-EISSLSNIEKIILSGTAIEEL-PSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRF 633 (945)
Q Consensus 557 ~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~l 633 (945)
|......| .+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|. +..+| ..+.++++|+.|+|++|...+..
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 88766666 567799999999999998866 4578889999999999987 44454 45788999999999998877766
Q ss_pred CCccCCcccCccccccCCC-CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-
Q 041079 634 PEEIGNVEASNSLYAYGTA-SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE- 711 (945)
Q Consensus 634 p~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~- 711 (945)
+..+..+++|+.|++++|. ...+|..+....+|+.|++++|... .. .+..+..+++|+.|+|++|.+..++.
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV-----PYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SC-----CHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-cc-----CHHHhcCccccCeeECCCCcCCccChh
Confidence 7778889999999998866 6677777777778999999988642 11 12346778899999999999987654
Q ss_pred ccCCCCCCCEEECCCCCCccc-chhhhCCCCCCEEeeccCCCCcccCC-c---ccccceEeeccCcc
Q 041079 712 SLGRLSLLEELDLRRNNFERV-PESIIQLSKLNYLYLSYCQRLQSLPE-L---PCNLILLYADHCTV 773 (945)
Q Consensus 712 ~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~~ 773 (945)
.+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+.. .+|. . .++|+.|++++++-
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCE
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCc
Confidence 678899999999999999866 567888999999999998754 4443 2 36788999887764
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8e-25 Score=253.82 Aligned_cols=275 Identities=16% Similarity=0.162 Sum_probs=216.9
Q ss_pred cccccceee-ccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 478 LDMSKVKEM-HLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 478 l~~~~~~~~-~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
++++.+... .+.+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|+.....+....+.++++|++|+|++
T Consensus 59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred EECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 444444332 4556778888999999999888887777788888899999998886533233334477788888889988
Q ss_pred CCCCCCCCC--ccCCcccceEeecCCCCcccC-cccc----------------------------------CCccccEEe
Q 041079 557 CKGLKKLPE--ISSLSNIEKIILSGTAIEELP-SSVG----------------------------------CLSGLVLLH 599 (945)
Q Consensus 557 ~~~l~~lp~--~~~l~~L~~L~Ls~~~i~~lp-~~i~----------------------------------~L~~L~~L~ 599 (945)
|......|. +.++++|++|+|++|.++.++ ..+. .+++|++|+
T Consensus 139 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218 (455)
T ss_dssp SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred CccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEe
Confidence 887666563 667888888888888887543 3333 336788999
Q ss_pred ccccccccccCcccC---------------------------------------CCCCCCEEeccCCCCCCccCCccCCc
Q 041079 600 LQACKMLKSLPCSLF---------------------------------------KLKSLEDLNLCRCSNLRRFPEEIGNV 640 (945)
Q Consensus 600 L~~~~~l~~lp~~i~---------------------------------------~l~~L~~L~Ls~~~~~~~lp~~l~~l 640 (945)
+++|...+..|..+. ..++|++|++++|...+..|..++.+
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence 988865443332211 13689999999999888889999999
Q ss_pred ccCccccccCCCCccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCC
Q 041079 641 EASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSL 718 (945)
Q Consensus 641 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~ 718 (945)
++|++|++++|.+..+ |..+..+++|+.|++++|.. ....+..+.++++|+.|+|++|.+..+ |..+..+++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL------GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc------CCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 9999999999998877 45889999999999999974 233456678899999999999999976 778999999
Q ss_pred CCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCCcccCC
Q 041079 719 LEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 719 L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
|++|+|++|+++.+|. .+..+++|+.|+|++|+.....|.
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999886 458999999999999998877764
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=4.1e-24 Score=257.34 Aligned_cols=147 Identities=25% Similarity=0.259 Sum_probs=84.7
Q ss_pred CEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEE
Q 041079 620 EDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSL 699 (945)
Q Consensus 620 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 699 (945)
++|++++|...+..+..++++++|++|++++|.+..+|..+..+++|+.|++++|.... ..|..+..+++|+.|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN------LCQISASNFPSLTHL 330 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB------GGGGCGGGCTTCSEE
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc------CchhhhhccCcCCEE
Confidence 33334433333333344667777888888888877888777778888888887776422 223344555666666
Q ss_pred eccCCCCC-ccCc-ccCCCCCCCEEECCCCCCccc---chhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccC
Q 041079 700 CLHNCGVT-RLPE-SLGRLSLLEELDLRRNNFERV---PESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHC 771 (945)
Q Consensus 700 ~L~~~~l~-~lp~-~l~~l~~L~~L~Ls~n~l~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c 771 (945)
++++|.+. .+|. .+..+++|++|+|++|.++.+ |..+..+++|+.|++++|+.....|.. .++|+.|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 66666555 3433 355566666666666665543 345555666666666665544333322 245555655555
Q ss_pred c
Q 041079 772 T 772 (945)
Q Consensus 772 ~ 772 (945)
.
T Consensus 411 ~ 411 (606)
T 3t6q_A 411 R 411 (606)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.9e-24 Score=236.14 Aligned_cols=258 Identities=18% Similarity=0.224 Sum_probs=112.5
Q ss_pred hccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCccc
Q 041079 493 FTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNI 572 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 572 (945)
|..+++|+.|+++++.+.+..+ +..+++|++|++++|.. ... ..+.++++|++|+|++|.. ..++.+..+++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i-~~~---~~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L 134 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-TDI---SALQNLTNLRELYLNEDNI-SDISPLANLTKM 134 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCC---GGGTTCTTCSEEECTTSCC-CCCGGGTTCTTC
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc-cCc---hHHcCCCcCCEEECcCCcc-cCchhhccCCce
Confidence 4445555555555554443322 44555555555554421 211 2244444555555555442 223334445555
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|... .++. +..+++|+.|++++|.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCC
Confidence 55555555333222334445555555555544 222322 444455555555544332 2222 4444444455554444
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
+..++. +..+++|+.|++++|.... .+. +..+++|+.|++++|.+..++ .+..+++|+.|++++|+++.+
T Consensus 211 l~~~~~-~~~~~~L~~L~l~~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 211 ITDITP-VANMTRLNSLKIGNNKITD-------LSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCch-hhcCCcCCEEEccCCccCC-------Ccc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC
Confidence 444433 4444445555554443211 011 334444444444444444432 344444444444444444444
Q ss_pred chhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCc
Q 041079 733 PESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCT 772 (945)
Q Consensus 733 p~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~ 772 (945)
| .+..+++|+.|++++|+.....|.. .++|+.|++++|+
T Consensus 281 ~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 281 S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 3 3444444444444444433322221 2344444444443
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.4e-25 Score=243.27 Aligned_cols=251 Identities=17% Similarity=0.197 Sum_probs=217.8
Q ss_pred cCccccccccccCCC--CCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccc
Q 041079 497 PKLRFLKFYRSSING--ENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIE 573 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~ 573 (945)
.+++.|+++++.+.+ .++..+..+++|++|++++++.+.. ..+..+.++++|++|+|++|...+.+| .+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999999998 7888999999999999996333332 234568899999999999998776777 578899999
Q ss_pred eEeecCCCCc-ccCccccCCccccEEeccccccccccCcccCCCC-CCCEEeccCCCCCCccCCccCCcccCccccccCC
Q 041079 574 KIILSGTAIE-ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLK-SLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGT 651 (945)
Q Consensus 574 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~ 651 (945)
+|+|++|.++ .+|..+..+++|++|+|++|...+.+|..+++++ +|++|++++|...+.+|..++.+. |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999999 7899999999999999999997779999999998 999999999998889999999987 999999999
Q ss_pred CCc-cCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCC
Q 041079 652 ASS-EVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 652 ~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l 729 (945)
.+. ..|..+..+++|+.|++++|.... ..+. +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECC------BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceee------ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 976 466788999999999999997432 2222 667899999999999999 7899999999999999999999
Q ss_pred c-ccchhhhCCCCCCEEeeccCCCCcccC
Q 041079 730 E-RVPESIIQLSKLNYLYLSYCQRLQSLP 757 (945)
Q Consensus 730 ~-~lp~~i~~l~~L~~L~L~~c~~l~~lp 757 (945)
+ .+|.. .++++|+.|++++|+.+...|
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9 67755 889999999999998665544
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.4e-23 Score=252.69 Aligned_cols=291 Identities=19% Similarity=0.178 Sum_probs=238.0
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.++++.+....+.+..|..+++|+.|++++|.+. .+|..+..+++|++|++++|..... .+..+.++++|++|++++
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL--CQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG--GGGCGGGCTTCSEEECCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC--chhhhhccCcCCEEECCC
Confidence 4566666667778888999999999999999887 5566788999999999998865332 234577889999999999
Q ss_pred CCCCCCCC--CccCCcccceEeecCCCCccc---CccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCC
Q 041079 557 CKGLKKLP--EISSLSNIEKIILSGTAIEEL---PSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLR 631 (945)
Q Consensus 557 ~~~l~~lp--~~~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~ 631 (945)
|.....+| .+..+++|++|++++|.+..+ |..+..+++|++|++++|......|..+.++++|++|++++|...+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 98776666 377899999999999999866 6678999999999999998766778888899999999999998776
Q ss_pred ccCCc-cCCcccCccccccCCCCccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc
Q 041079 632 RFPEE-IGNVEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL 709 (945)
Q Consensus 632 ~lp~~-l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l 709 (945)
..|.. +.++++|++|++++|.+... |..+..+++|+.|++++|...... ...+..+..+++|+.|++++|.+..+
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN---IQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE---ECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc---cccchhhccCCCccEEECCCCccCcc
Confidence 66544 88999999999999997665 557889999999999999753210 11234567889999999999999975
Q ss_pred -CcccCCCCCCCEEECCCCCCcc-cchhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCccc
Q 041079 710 -PESLGRLSLLEELDLRRNNFER-VPESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCTVL 774 (945)
Q Consensus 710 -p~~l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L 774 (945)
|..++.+++|+.|+|++|+++. .|..+.++++| .|+|++|+.....|.. .++|+.|++++|+-.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 6788999999999999999984 56789999999 9999999877665553 367899999988764
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=252.09 Aligned_cols=281 Identities=19% Similarity=0.118 Sum_probs=184.0
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.++++.+....+.+..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|+. ..+|.. .+++|++|+|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~----~l~~L~~L~L~~ 99 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH----PTVNLKHLDLSF 99 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-CEEECC----CCCCCSEEECCS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-eecCcc----ccCCccEEeccC
Confidence 456666666667778888999999999999988887777888899999999988754 344432 678888889998
Q ss_pred CCCCC-CCC-CccCCcccceEeecCCCCcccCccccCCccc--cEEecccccc--ccccCcccCCC--------------
Q 041079 557 CKGLK-KLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGL--VLLHLQACKM--LKSLPCSLFKL-------------- 616 (945)
Q Consensus 557 ~~~l~-~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L--~~L~L~~~~~--l~~lp~~i~~l-------------- 616 (945)
|.... .+| .+.++++|++|++++|.++. ..+..+++| +.|++++|.. .+..|..+..+
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 88665 355 67778999999999988875 346667777 8888888775 44455444442
Q ss_pred ------------C---------------------------------------------------------CCCEEeccCC
Q 041079 617 ------------K---------------------------------------------------------SLEDLNLCRC 627 (945)
Q Consensus 617 ------------~---------------------------------------------------------~L~~L~Ls~~ 627 (945)
+ +|++|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 2 4444555544
Q ss_pred CCCCccCCcc-----CCcccCccccccCCCCccCC-ccccCC---CCCcEEEcccCCCCccCccccccccccCCCCCCCE
Q 041079 628 SNLRRFPEEI-----GNVEASNSLYAYGTASSEVP-SSIVRS---NNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKS 698 (945)
Q Consensus 628 ~~~~~lp~~l-----~~l~~L~~L~l~~~~~~~lp-~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 698 (945)
...+.+|..+ +++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|..... + ....+++|+.
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-------~-~~~~l~~L~~ 328 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-------L-CPSKISPFLH 328 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC-------C-CCSSCCCCCE
T ss_pred cccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc-------c-chhhCCcccE
Confidence 4444555555 5555555555555555 444 222222 3344444444432110 0 0145667777
Q ss_pred EeccCCCCCc-cCcccCCCCCCCEEECCCCCCcc---cchhhhCCCCCCEEeeccCCCCcccCC----cccccceEeecc
Q 041079 699 LCLHNCGVTR-LPESLGRLSLLEELDLRRNNFER---VPESIIQLSKLNYLYLSYCQRLQSLPE----LPCNLILLYADH 770 (945)
Q Consensus 699 L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~----l~~~L~~L~~~~ 770 (945)
|++++|.+.. +|..++.+++|++|+|++|+++. +|..+..+++|+.|+|++|+....+|. .+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 7777777775 66677777777777777777763 345667777777777777766554553 235677777777
Q ss_pred Ccc
Q 041079 771 CTV 773 (945)
Q Consensus 771 c~~ 773 (945)
|..
T Consensus 409 N~l 411 (520)
T 2z7x_B 409 NIL 411 (520)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.9e-24 Score=234.82 Aligned_cols=220 Identities=24% Similarity=0.316 Sum_probs=140.8
Q ss_pred CcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCccccCCccccEE
Q 041079 520 HGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGLVLL 598 (945)
Q Consensus 520 l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 598 (945)
.++++.|+|++|.. ..+ +..+.++++|++|+|++|... .+| .+.++++|++|+|++|.++.+|..++.+++|++|
T Consensus 80 ~~~l~~L~L~~n~l-~~l--p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQF--PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCC-SSC--CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCc-hhc--ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 46677777776653 333 234566777777777777655 555 4666777777777777777777777777777777
Q ss_pred eccccccccccCcccCC---------CCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEE
Q 041079 599 HLQACKMLKSLPCSLFK---------LKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFL 669 (945)
Q Consensus 599 ~L~~~~~l~~lp~~i~~---------l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L 669 (945)
+|++|..++.+|..++. +++|++|+|++|... .+|..++++++|++|++++|.+..+|..+..+++|+.|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 77777767777766543 666777777666544 66666666666666666666666666666666666666
Q ss_pred EcccCCCCccCccccccccccCCCCCCCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEee
Q 041079 670 SFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYL 747 (945)
Q Consensus 670 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L 747 (945)
++++|.... .+|..+.++++|+.|+|++|++. .+|..++.+++|++|+|++|++. .+|.++.++++|+.+++
T Consensus 235 ~Ls~n~~~~------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 235 DLRGCTALR------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp ECTTCTTCC------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred ECcCCcchh------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 666665332 23444555666666666665544 45656666666666666665444 56666666666666666
Q ss_pred ccC
Q 041079 748 SYC 750 (945)
Q Consensus 748 ~~c 750 (945)
..+
T Consensus 309 ~~~ 311 (328)
T 4fcg_A 309 PPH 311 (328)
T ss_dssp CGG
T ss_pred CHH
Confidence 543
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=244.54 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=232.2
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.++++.+....+.+..|..+++|+.|++++|.+....+..+..+++|++|+|++|..... .+..+.++++|+.|+|++
T Consensus 60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECC
T ss_pred EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCC
Confidence 356666666677788999999999999999999887777789999999999998875432 235678899999999999
Q ss_pred CCCCCCCC-CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccC
Q 041079 557 CKGLKKLP-EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP 634 (945)
Q Consensus 557 ~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp 634 (945)
|......+ .+.++++|++|+|++|.++.+|. .+..+++|+.|+|++|......+..+.++++|++|++++|...+.+|
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 98665555 67789999999999999998886 48999999999999998666556678899999999999999999999
Q ss_pred CccCCcccCccccccCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-Ccc
Q 041079 635 EEIGNVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PES 712 (945)
Q Consensus 635 ~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~ 712 (945)
.......+|++|++++|.+..+|. .+..+++|+.|++++|... ...+..+.++++|+.|+|++|.+..+ |..
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS------TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC------EECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC------ccChhhccccccCCEEECCCCccceECHHH
Confidence 988888899999999999999985 6889999999999999742 23345578899999999999999975 678
Q ss_pred cCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCC
Q 041079 713 LGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 713 l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l 753 (945)
+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 9999999999999999998885 4688999999999999854
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.3e-23 Score=232.01 Aligned_cols=215 Identities=26% Similarity=0.386 Sum_probs=189.4
Q ss_pred ccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 546 LKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 546 l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
..+++.|+|++|... .+| .+.++++|++|+|++|.++.+|..++.+++|++|+|++|. +..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 357889999998865 555 6888999999999999999999999999999999999998 5589999999999999999
Q ss_pred cCCCCCCccCCccCC---------cccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCC
Q 041079 625 CRCSNLRRFPEEIGN---------VEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHS 695 (945)
Q Consensus 625 s~~~~~~~lp~~l~~---------l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 695 (945)
++|...+.+|..++. +++|++|++++|.+..+|..+..+++|+.|++++|... .+|..+..+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-------~l~~~l~~l~~ 230 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------ALGPAIHHLPK 230 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-------CCCGGGGGCTT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-------cCchhhccCCC
Confidence 999999999988765 99999999999999999999999999999999999853 24445788999
Q ss_pred CCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCCCCEEeeccCCCCcccCCccc---ccceEeec
Q 041079 696 LKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSKLNYLYLSYCQRLQSLPELPC---NLILLYAD 769 (945)
Q Consensus 696 L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~---~L~~L~~~ 769 (945)
|+.|+|++|++. .+|..++.+++|++|+|++|++. .+|..+..+++|+.|+|++|+.++.+|.... +|+.+++.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 999999998877 68889999999999999998765 8899999999999999999999999998654 44555443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.8e-23 Score=229.15 Aligned_cols=256 Identities=18% Similarity=0.234 Sum_probs=127.3
Q ss_pred ccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccc
Q 041079 494 TKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIE 573 (945)
Q Consensus 494 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~ 573 (945)
..+++|+.|++.++.+.... .+..+++|++|++++|.. ...+. +.++++|++|+|++|. +..+|.+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i-~~~~~---~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI-TDISP---LSNLVKLTNLYIGTNK-ITDISALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCC-CCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTCTTCS
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCcc-ccchh---hhcCCcCCEEEccCCc-ccCchHHcCCCcCC
Confidence 34455555555555544321 244555555555555432 22211 4455555555555553 23344455555555
Q ss_pred eEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCC
Q 041079 574 KIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 574 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|......+ +..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 55555555555544 55555555555555544444433 4555555555555554332221 44555555555555555
Q ss_pred ccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccc
Q 041079 654 SEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVP 733 (945)
Q Consensus 654 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 733 (945)
..++. +..+++|+.|++++|...... . +..+++|+.|++++|.+..++. +..+++|++|+|++|.++.++
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-------~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQITDIT-------P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCCG-------G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ccccc-ccCCCccceeecccCCCCCCc-------h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh
Confidence 55544 455555555555555421110 0 3345555555555555555544 555555555555555555543
Q ss_pred hhhhCCCCCCEEeeccCCCCcccCCc--ccccceEeeccCc
Q 041079 734 ESIIQLSKLNYLYLSYCQRLQSLPEL--PCNLILLYADHCT 772 (945)
Q Consensus 734 ~~i~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~ 772 (945)
.+..+++|+.|++++|+. ..+|.+ +++|+.|++++|.
T Consensus 260 -~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp -GGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC
T ss_pred -hHhcCCCcCEEEccCCcc-CCChhhcCCCCCCEEECcCCc
Confidence 345555555555555542 223322 2455555555553
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4.4e-23 Score=245.73 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=70.3
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.++++.+....+.+..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|.. ..+|.. .+++|++|+|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~----~l~~L~~L~Ls~ 130 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCC----PMASLRHLDLSF 130 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEECSC----CCTTCSEEECCS
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-CccCcc----ccccCCEEECCC
Confidence 456666666667777788888888888888887776666777788888888887653 344432 567777777777
Q ss_pred CCCCC-CCC-CccCCcccceEeecCCCCc
Q 041079 557 CKGLK-KLP-EISSLSNIEKIILSGTAIE 583 (945)
Q Consensus 557 ~~~l~-~lp-~~~~l~~L~~L~Ls~~~i~ 583 (945)
|.... .+| .+.++++|++|+|++|.++
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCccccCchHhhcccCcccEEecCCCccc
Confidence 76544 233 4666777777777777665
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=245.06 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred CCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCcc---CCccccCCCCCcEEEcccCCCCccCcccccccccc
Q 041079 614 FKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE---VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSS 690 (945)
Q Consensus 614 ~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 690 (945)
..+++|++|++++|...+.+|..++++++|++|++++|.+.. +|..+..+++|+.|++++|......+ +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-----~~~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-----KGDC 395 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-----GCSC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc-----cchh
Confidence 456667777777766666666666777777777777776653 33456667777777777666422111 1124
Q ss_pred CCCCCCCEEeccCCCCC-ccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc----ccccce
Q 041079 691 DGLHSLKSLCLHNCGVT-RLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL----PCNLIL 765 (945)
Q Consensus 691 ~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l----~~~L~~ 765 (945)
..+++|+.|++++|.++ .+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|+.. .+|.. .++|+.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 55667777777777765 3444443 5677777777777777776667777777777777533 45542 355666
Q ss_pred EeeccCcc
Q 041079 766 LYADHCTV 773 (945)
Q Consensus 766 L~~~~c~~ 773 (945)
|++++++-
T Consensus 473 L~l~~N~~ 480 (520)
T 2z7x_B 473 IWLHTNPW 480 (520)
T ss_dssp EECCSSCB
T ss_pred EECcCCCC
Confidence 77666654
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.2e-23 Score=250.01 Aligned_cols=290 Identities=19% Similarity=0.242 Sum_probs=191.4
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
++++.+....+.+.+|..+++|+.|++++|.+.+..+..+..+++|++|++++|.. ...+.+..+.++++|++|+|++|
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEES
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCC
Confidence 45555555555666677777777777777777766666677777777777776643 33333445667777777777777
Q ss_pred CCCCCCC--CccCCcccceEeecCCCCcc-cCccccCCccccEEeccccccccccCccc-CCCCCCCEEeccCCCCCCcc
Q 041079 558 KGLKKLP--EISSLSNIEKIILSGTAIEE-LPSSVGCLSGLVLLHLQACKMLKSLPCSL-FKLKSLEDLNLCRCSNLRRF 633 (945)
Q Consensus 558 ~~l~~lp--~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~~~~~~~l 633 (945)
.....+| .+.++++|++|++++|.++. .|..++.+++|++|++++|. ...+|..+ ..+++|++|++++|...+..
T Consensus 134 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCcccccc
Confidence 6555554 46667777777777777763 56666666555555555544 22333221 23455555555555433210
Q ss_pred --C--------------------------------------------------------------CccC-----------
Q 041079 634 --P--------------------------------------------------------------EEIG----------- 638 (945)
Q Consensus 634 --p--------------------------------------------------------------~~l~----------- 638 (945)
| ..++
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 0 0000
Q ss_pred ---------------CcccCccccccCCCCccCCccc-cCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEecc
Q 041079 639 ---------------NVEASNSLYAYGTASSEVPSSI-VRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLH 702 (945)
Q Consensus 639 ---------------~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 702 (945)
.+.+|+.|++++|.+..+|..+ ..+++|+.|++++|......+. .+..+..+++|+.|+++
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK---NSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH---HHTCTTSSTTCCEEECT
T ss_pred cchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc---chhhhhccccCcEEEcc
Confidence 1134666777777777777766 4688999999988875322110 02235678899999999
Q ss_pred CCCCCccC---cccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC-cccccceEeeccCcc
Q 041079 703 NCGVTRLP---ESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE-LPCNLILLYADHCTV 773 (945)
Q Consensus 703 ~~~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~ 773 (945)
+|.++.+| ..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+. ..+|. .+++|+.|++++|.-
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNL 443 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC-SCCCTTSCTTCSEEECCSSCC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc-ccccchhcCCceEEECCCCCh
Confidence 99998765 357888999999999999999998888899999999999874 44553 467899999988843
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.7e-22 Score=234.80 Aligned_cols=257 Identities=20% Similarity=0.285 Sum_probs=150.1
Q ss_pred hccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCccc
Q 041079 493 FTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNI 572 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 572 (945)
+..+++|+.|+++++.+.+..+ +..+++|++|++++|... ..+. +.++++|++|+|++|.. ..++.+.++++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP---LANLTNLTGLTLFNNQI-TDIDPLKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG---GTTCTTCCEEECCSSCC-CCCGGGTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh---hcCCCCCCEEECCCCCC-CCChHHcCCCCC
Confidence 4556666666666665554433 555666666666655322 1111 45555666666665542 233345556666
Q ss_pred ceEeecCCCCcccCc--------------------cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCc
Q 041079 573 EKIILSGTAIEELPS--------------------SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRR 632 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~--------------------~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~ 632 (945)
++|++++|.+..+|. .+..+++|+.|++++|. +..++. +.++++|++|++++|...+.
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccc
Confidence 666666655555442 14455556666666555 333432 45566666666666554443
Q ss_pred cCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcc
Q 041079 633 FPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPES 712 (945)
Q Consensus 633 lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~ 712 (945)
.| ++.+++|++|++++|.+..++ .+..+++|+.|++++|..... +. +..+++|+.|++++|.+..++.
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-------~~-~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-------AP-LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-------GG-GTTCTTCSEEECCSSCCCCCGG-
T ss_pred cc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccc-------hh-hhcCCCCCEEECCCCccCcccc-
Confidence 33 455666666666666665553 455666666666666653211 11 4566777777777777776665
Q ss_pred cCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccC-CcccccceEeeccC
Q 041079 713 LGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLP-ELPCNLILLYADHC 771 (945)
Q Consensus 713 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~l~~~L~~L~~~~c 771 (945)
+..+++|+.|+|++|+++.++. +..+++|+.|+|++|+..+..| ...++|+.|++++|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 6677777777777777776664 6677777777777776544333 12466777777776
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.2e-22 Score=224.96 Aligned_cols=260 Identities=17% Similarity=0.148 Sum_probs=191.1
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 575 (945)
.+++.++++++.+.... ..+ .++|+.|++++|+. ...+ ...+.++++|++|+|++|......| .+..+++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKI-TEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCC-CCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccC-ccC--CCCCeEEECCCCcC-CEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 46777777776665432 222 26788888887753 3332 2356778888888888887666555 56778888888
Q ss_pred eecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCC--ccCCccCCcccCccccccCCCC
Q 041079 576 ILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLR--RFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 576 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~--~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+|++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..|..+..+++|++|++++|.+
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 888888888887765 788888888887444444557788888888888887643 5667788888888888888888
Q ss_pred ccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCccc
Q 041079 654 SEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 654 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 732 (945)
..+|..+. ++|+.|++++|... ...+..+.++++|+.|++++|.+..++. .+..+++|++|+|++|+++.+
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKIT------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCC------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred ccCCcccc--ccCCEEECCCCcCC------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence 88887664 78888888888732 2234556778888889998888887654 678888889999998888888
Q ss_pred chhhhCCCCCCEEeeccCCCCcccCC-c---------ccccceEeeccCc
Q 041079 733 PESIIQLSKLNYLYLSYCQRLQSLPE-L---------PCNLILLYADHCT 772 (945)
Q Consensus 733 p~~i~~l~~L~~L~L~~c~~l~~lp~-l---------~~~L~~L~~~~c~ 772 (945)
|.++..+++|+.|+|++|+.. .+|. . .++++.|++.+++
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCc
Confidence 888888888899998888743 3332 1 2455666666554
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.3e-23 Score=235.84 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=120.3
Q ss_pred hccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCccc
Q 041079 493 FTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNI 572 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 572 (945)
|..+++|+.|++++|.+.+. .+..+++|++|++++|.. ...+ +.++++|++|+|++|.... +| +..+++|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l-~~~~----~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L 129 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKL-TNLD----VTPLTKLTYLNCDTNKLTK-LD-VSQNPLL 129 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SCCC----CTTCTTCCEEECCSSCCSC-CC-CTTCTTC
T ss_pred hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCC-ceee----cCCCCcCCEEECCCCcCCe-ec-CCCCCcC
Confidence 44555555555555554442 144455555555554432 2221 3444555555555554222 33 4445555
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|...+ +| ++.+++|+.|++++|.
T Consensus 130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC
T ss_pred CEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCc
Confidence 55555555555443 4455555555555554444442 4455555555555544332 33 4455555555555555
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
+..++ +..+++|+.|++++|.... +| +..+++|+.|++++|.+..+| ++.+++|+.|++++|+++.+
T Consensus 203 l~~~~--l~~l~~L~~L~Ls~N~l~~-------ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 203 ITKLD--LNQNIQLTFLDCSSNKLTE-------ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCC
T ss_pred CCeec--cccCCCCCEEECcCCcccc-------cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEE
Confidence 54442 4455555555555554211 11 334555555555555555443 23333443333333332211
Q ss_pred ch---------hhhCCCCCCEEeeccCCCCcccCCcccccceEeeccCccccc
Q 041079 733 PE---------SIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHCTVLKS 776 (945)
Q Consensus 733 p~---------~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~ 776 (945)
.- .+..+++|+.|+|++|+.++.+|...++|+.|++++|++|+.
T Consensus 270 ~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp CCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred ECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 10 123455666666666665555555445555555555555443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1e-22 Score=242.67 Aligned_cols=285 Identities=16% Similarity=0.136 Sum_probs=190.9
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.+|++.+....++...+ ++|+.|++++|.+.+..+..+..+++|++|+|++|+.. .. .+..+.++++|++|+|++
T Consensus 35 ~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~-~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SL-DFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp EEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EE-CTTTTTTCTTCCEEECTT
T ss_pred EEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cC-CHHHhCCCCCCCEEECCC
Confidence 45666555555554433 79999999999999988889999999999999988643 32 345688899999999999
Q ss_pred CCCCCCCCCccCCcccceEeecCCCCcccC--ccccCCccccEEeccccccccccCcccCCCCCC--CEEeccCCCC--C
Q 041079 557 CKGLKKLPEISSLSNIEKIILSGTAIEELP--SSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSL--EDLNLCRCSN--L 630 (945)
Q Consensus 557 ~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~--~ 630 (945)
|... .+|.. .+++|++|+|++|.++.+| ..++.+++|++|++++|..... .+..+++| ++|++++|.. .
T Consensus 110 N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 9854 67755 8999999999999999765 7899999999999999885432 34455555 9999998877 5
Q ss_pred CccCCccCCc--------------------------c-------------------------------------------
Q 041079 631 RRFPEEIGNV--------------------------E------------------------------------------- 641 (945)
Q Consensus 631 ~~lp~~l~~l--------------------------~------------------------------------------- 641 (945)
+..|..+..+ +
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 5555444432 2
Q ss_pred ------------cCccccccCCCCc-cCCccc-----cCCCCCcEEEcccCCCCccCccc-------------------c
Q 041079 642 ------------ASNSLYAYGTASS-EVPSSI-----VRSNNFRFLSFRESRGDKQMGLS-------------------L 684 (945)
Q Consensus 642 ------------~L~~L~l~~~~~~-~lp~~l-----~~l~~L~~L~l~~~~~~~~~~~~-------------------~ 684 (945)
+|++|++++|.+. .+|..+ ..++.|+.+++..+.. ..+.. .
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC
Confidence 3444444444433 555544 2222222222222211 00000 0
Q ss_pred ccccc-cCCCCCCCEEeccCCCCCc-cCcccCCCCCCCEEECCCCCCcccc---hhhhCCCCCCEEeeccCCCCcccCCc
Q 041079 685 LISLS-SDGLHSLKSLCLHNCGVTR-LPESLGRLSLLEELDLRRNNFERVP---ESIIQLSKLNYLYLSYCQRLQSLPEL 759 (945)
Q Consensus 685 ~~~~~-l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp---~~i~~l~~L~~L~L~~c~~l~~lp~l 759 (945)
..+.. ...+++|+.|++++|.+.. +|..++.+++|+.|+|++|+++.+| ..+..+++|+.|+|++|+....+|..
T Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 00000 1456777777777777775 6667777777777777777777544 45677777777777777765545532
Q ss_pred ----ccccceEeeccCcc
Q 041079 760 ----PCNLILLYADHCTV 773 (945)
Q Consensus 760 ----~~~L~~L~~~~c~~ 773 (945)
+++|+.|++++|..
T Consensus 423 ~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 423 TCAWAESILVLNLSSNML 440 (562)
T ss_dssp CCCCCTTCCEEECCSSCC
T ss_pred hhcCcccCCEEECCCCCC
Confidence 36677777777654
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=253.42 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=150.4
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCC-ccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGEN-KCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
+|++.+....+.+..|..+++|+.|++++|...+.+ +..+.++++|++|+|++|..... .+..+.++++|++|+|++
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL--HPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE--CTTSSCSCSSCCCEECTT
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc--CHhHccCCcccCEeeCcC
Confidence 344444444444444555555555555554333222 33444555555555554432211 123344445555555555
Q ss_pred CCCCCCCC-C--ccCCcccceEeecCCCCcccC--ccccCCccccEEeccccc--------------------------c
Q 041079 557 CKGLKKLP-E--ISSLSNIEKIILSGTAIEELP--SSVGCLSGLVLLHLQACK--------------------------M 605 (945)
Q Consensus 557 ~~~l~~lp-~--~~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~--------------------------~ 605 (945)
|.....+| . +.++++|++|+|++|.+..++ ..++++++|++|+|++|. .
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 44433322 1 344555555555555544332 234445555555555444 3
Q ss_pred ccccCcccCCCCC------CCEEeccCCCCCCccCCccCC--------------------------------------cc
Q 041079 606 LKSLPCSLFKLKS------LEDLNLCRCSNLRRFPEEIGN--------------------------------------VE 641 (945)
Q Consensus 606 l~~lp~~i~~l~~------L~~L~Ls~~~~~~~lp~~l~~--------------------------------------l~ 641 (945)
.+..|..++.+++ |++|++++|...+..|..+.. ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 3333433333333 666666666444333322211 14
Q ss_pred cCccccccCCCCccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCC
Q 041079 642 ASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLL 719 (945)
Q Consensus 642 ~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L 719 (945)
+|+.|++++|.+..+ |..+..+++|+.|++++|... ...+..+.++++|+.|+|++|.+..+ |..+..+++|
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 566666766665544 345666777777777777632 23344566777888888888877764 5677777888
Q ss_pred CEEECCCCCCcccch-hhhCCCCCCEEeeccCCCCcccCCcccccceEeecc
Q 041079 720 EELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADH 770 (945)
Q Consensus 720 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~ 770 (945)
+.|+|++|++..++. .+..+++|+.|+|++|.. ..++. +++|+.|++++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~-~~~L~~L~l~~ 390 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHF-IPSIPDIFLSG 390 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCSS-CCSCSEEEEES
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-CcccC-CCCcchhccCC
Confidence 888888887776653 466777788888777753 33333 33455555443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=9e-23 Score=231.47 Aligned_cols=263 Identities=14% Similarity=0.113 Sum_probs=215.3
Q ss_pred cCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcccc
Q 041079 495 KMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSNIE 573 (945)
Q Consensus 495 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~L~ 573 (945)
.+++++.|++.++.+....+..+..+++|++|++++|.. ... .+..+.++++|++|+|++|......|. +.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-ccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 468999999999988876666688999999999998864 333 234678899999999999987666664 67899999
Q ss_pred eEeecCCCCcccCcc-ccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 574 KIILSGTAIEELPSS-VGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 574 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+|+|++|.++.+|.. +..+++|++|++++|......|..+.++++|++|++++|.... + .++.+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccc
Confidence 999999999999987 4899999999999998655556678999999999999987654 3 35678899999999998
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
+..+ ....+|+.|++++|.... ++. ..+++|+.|++++|.++.. +.+..+++|++|+|++|.++.+
T Consensus 198 l~~~----~~~~~L~~L~l~~n~l~~-------~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 198 LSTL----AIPIAVEELDASHNSINV-------VRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSEE----ECCSSCSEEECCSSCCCE-------EEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccc----CCCCcceEEECCCCeeee-------ccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc
Confidence 7654 345689999999987522 122 2357899999999999987 4788999999999999999965
Q ss_pred -chhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCccccccc
Q 041079 733 -PESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCTVLKSIS 778 (945)
Q Consensus 733 -p~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 778 (945)
|..+..+++|+.|+|++|+. ..+|.. .++|+.|++++|. +..++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 311 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVE 311 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred ChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-ceecC
Confidence 77899999999999999975 445542 5789999999984 44554
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=245.26 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=68.8
Q ss_pred ccCCCCCCCEEeccCCCCCc-cCcccCCCCCCCEEECCCCCCc--ccchhhhCCCCCCEEeeccCCCCcccCCc---ccc
Q 041079 689 SSDGLHSLKSLCLHNCGVTR-LPESLGRLSLLEELDLRRNNFE--RVPESIIQLSKLNYLYLSYCQRLQSLPEL---PCN 762 (945)
Q Consensus 689 ~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~ 762 (945)
.+..+++|+.|++++|.+.. .|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|+..+..|.. .++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 46678889999999998885 5667888999999999999886 58888899999999999999876665643 367
Q ss_pred cceEeeccCc
Q 041079 763 LILLYADHCT 772 (945)
Q Consensus 763 L~~L~~~~c~ 772 (945)
|+.|++++|.
T Consensus 496 L~~L~l~~n~ 505 (570)
T 2z63_A 496 LQVLNMASNQ 505 (570)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 8999998874
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.5e-23 Score=248.25 Aligned_cols=267 Identities=18% Similarity=0.129 Sum_probs=228.2
Q ss_pred hccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCccc
Q 041079 493 FTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNI 572 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 572 (945)
|..+++|+.|++.++.+... + .+..+++|+.|++++|.. ..+|. + .+++|+.|++++|.....+ .+..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISF-KKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEEC-CCCCCTTC
T ss_pred cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccch-hhccCCCC
Confidence 88999999999999988654 3 788899999999999876 55552 3 8899999999999766555 56689999
Q ss_pred ceEeecCCCCccc---CccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccC-CccCCcccCccccc
Q 041079 573 EKIILSGTAIEEL---PSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP-EEIGNVEASNSLYA 648 (945)
Q Consensus 573 ~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l 648 (945)
++|++++|.++.+ |..+..+++|++|++++|. +..+|..+..+++|++|++++|...+..| ..+.++++|++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 9999999999866 7889999999999999998 67788889999999999999998877777 67899999999999
Q ss_pred cCCCCcc-CCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCC
Q 041079 649 YGTASSE-VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRR 726 (945)
Q Consensus 649 ~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~ 726 (945)
++|.+.. .|..+..+++|+.|++++|.... ...|..+..+++|+.|++++|.++.+ |..++.+++|++|+|++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-----NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCC-----cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 9999765 56788999999999999997421 13566788999999999999999975 56789999999999999
Q ss_pred CCCccc-chhhhCCCCCCEEeeccCCCCcccCC----cccccceEeeccCccc
Q 041079 727 NNFERV-PESIIQLSKLNYLYLSYCQRLQSLPE----LPCNLILLYADHCTVL 774 (945)
Q Consensus 727 n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~----l~~~L~~L~~~~c~~L 774 (945)
|+++.+ |..+..+++|+.|+|++|+. ..+|. ++.+|+.|++++++-.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCC-CCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcC-cccCHhHhhhcccCcEEEccCCCcc
Confidence 999966 78899999999999999984 46775 3347999999988764
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.1e-22 Score=223.15 Aligned_cols=259 Identities=17% Similarity=0.165 Sum_probs=206.6
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 575 (945)
.+++.++++++.+.... ..+ .++|+.|++++|.. ...+ +..+.++++|++|+|++|......| .+.++++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVP-KEI--SPDTTLLDLQNNDI-SELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCC-SCC--CTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccC-CCC--CCCCeEEECCCCcC-CccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 47888888888776433 222 36899999998864 3332 3457888999999999998665555 57789999999
Q ss_pred eecCCCCcccCccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCC--CccCCccCCcccCccccccCCC
Q 041079 576 ILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNL--RRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 576 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~--~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+|++|.++.+|..+. ++|++|++++|.. ..+| ..+.++++|++|++++|... +..|..+..+ +|++|++++|.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999999999998776 8999999999884 4555 45888999999999998774 3567778877 89999999999
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCcc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFER 731 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 731 (945)
+..+|..+. ++|+.|++++|... ...+..+..+++|+.|++++|.+..++. .+..+++|+.|+|++|+++.
T Consensus 184 l~~l~~~~~--~~L~~L~l~~n~i~------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 184 LTGIPKDLP--ETLNELHLDHNKIQ------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp CSSCCSSSC--SSCSCCBCCSSCCC------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred CCccCcccc--CCCCEEECCCCcCC------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 999988765 78999999998742 2234567788999999999999998764 78899999999999999999
Q ss_pred cchhhhCCCCCCEEeeccCCCCcccCC-c---------ccccceEeeccCcc
Q 041079 732 VPESIIQLSKLNYLYLSYCQRLQSLPE-L---------PCNLILLYADHCTV 773 (945)
Q Consensus 732 lp~~i~~l~~L~~L~L~~c~~l~~lp~-l---------~~~L~~L~~~~c~~ 773 (945)
+|..+..+++|+.|+|++|+.. .+|. . .++|+.|++.+++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcc
Confidence 9999999999999999998754 3332 1 35578888887764
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=4.7e-23 Score=244.99 Aligned_cols=281 Identities=19% Similarity=0.230 Sum_probs=169.8
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCC-CCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeec
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSING-ENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLR 555 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~-~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 555 (945)
.+|++.+....+.+..|..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|..+...+ ...+.++++|++|+|+
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIK 156 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeecc
Confidence 45667666667777789999999999999998876 455678889999999999887655543 2456778888888998
Q ss_pred CCCCCCCCC-CccC------------------------CcccceEeecCCCCcccC---ccc------------------
Q 041079 556 GCKGLKKLP-EISS------------------------LSNIEKIILSGTAIEELP---SSV------------------ 589 (945)
Q Consensus 556 ~~~~l~~lp-~~~~------------------------l~~L~~L~Ls~~~i~~lp---~~i------------------ 589 (945)
+|......| .+.. +++|++|++++|.++.++ ..+
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 887665555 3433 455566666665555421 000
Q ss_pred -----------cCC-----------------------------------------------------------ccccEEe
Q 041079 590 -----------GCL-----------------------------------------------------------SGLVLLH 599 (945)
Q Consensus 590 -----------~~L-----------------------------------------------------------~~L~~L~ 599 (945)
..+ .+|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 011 1222233
Q ss_pred ccccccccccCccc-CCCCCCCEEeccCCCCCCccC---CccCCcccCccccccCCCCccCCc---cccCCCCCcEEEcc
Q 041079 600 LQACKMLKSLPCSL-FKLKSLEDLNLCRCSNLRRFP---EEIGNVEASNSLYAYGTASSEVPS---SIVRSNNFRFLSFR 672 (945)
Q Consensus 600 L~~~~~l~~lp~~i-~~l~~L~~L~Ls~~~~~~~lp---~~l~~l~~L~~L~l~~~~~~~lp~---~l~~l~~L~~L~l~ 672 (945)
+++|. +..+|..+ .++++|++|++++|...+.+| ..++.+++|++|++++|.+..+|. .+..+++|+.|+++
T Consensus 317 l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 317 VENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred eccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 33222 22334333 245666666666666555443 235566666666666666655542 35566666666666
Q ss_pred cCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 673 ESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
+|... .+|..+..+++|+.|++++|.+..+|..+. ++|+.|+|++|+++.++ ..+++|+.|+|++|+.
T Consensus 396 ~N~l~-------~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 396 RNTFH-------PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKL 463 (549)
T ss_dssp TCCCC-------CCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC
T ss_pred CCCCc-------cCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCcc
Confidence 66431 234445555666666666666665554332 35555555555555443 3567777777777753
Q ss_pred CcccCCc--ccccceEeeccCc
Q 041079 753 LQSLPEL--PCNLILLYADHCT 772 (945)
Q Consensus 753 l~~lp~l--~~~L~~L~~~~c~ 772 (945)
+.+|.. +++|+.|++++|.
T Consensus 464 -~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 464 -KTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp -SSCCCGGGCTTCCEEECCSSC
T ss_pred -CcCCCcccCccCCEEecCCCc
Confidence 366653 4677777777763
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1e-22 Score=245.09 Aligned_cols=269 Identities=15% Similarity=0.120 Sum_probs=162.5
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 575 (945)
++|+.|++++|.+.+..+..+.++++|++|++++|... .+ .+..+.++++|++|+|++|......| .+.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-cc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 56666666666666655556666666777776665432 22 12345666666666776666544444 45566667777
Q ss_pred eecCCCCcccC-ccccCCccccEEecccccccc-ccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCc----ccccc
Q 041079 576 ILSGTAIEELP-SSVGCLSGLVLLHLQACKMLK-SLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASN----SLYAY 649 (945)
Q Consensus 576 ~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~----~L~l~ 649 (945)
+|++|.+..+| ..++.+++|++|++++|...+ .+|..++++++|++|++++|...+..|..++.+.+|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 77776666555 456666677777776666433 4566666667777777766665555555555555554 46666
Q ss_pred CCCCccCCccccCCCCCcEEEcccCCCCc---------------------------------------------------
Q 041079 650 GTASSEVPSSIVRSNNFRFLSFRESRGDK--------------------------------------------------- 678 (945)
Q Consensus 650 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--------------------------------------------------- 678 (945)
+|.+..+|.......+|+.|++++|....
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 66666666555555566666666654210
Q ss_pred -cCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccC
Q 041079 679 -QMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLP 757 (945)
Q Consensus 679 -~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp 757 (945)
........|. +..+++|+.|++++|.+..+| .+..+++|++|++++|.+..+| .+ .+++|+.|++++|+....++
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC
T ss_pred ccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh
Confidence 0001112222 556677788888887777777 6777777888888887777777 33 67777777777765444332
Q ss_pred C-cccccceEeeccC
Q 041079 758 E-LPCNLILLYADHC 771 (945)
Q Consensus 758 ~-l~~~L~~L~~~~c 771 (945)
. ..++|+.|++++|
T Consensus 346 ~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 346 KVALPSLSYLDLSRN 360 (606)
T ss_dssp CCCCTTCCEEECCSS
T ss_pred hccCCCCCEEECcCC
Confidence 1 1244555555444
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=252.81 Aligned_cols=290 Identities=15% Similarity=0.089 Sum_probs=206.9
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
..|.+......++. -.++|+.|++++|.+.+..+..+.++++|++|+|++|.....+ .+..+.++++|++|+|++
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCC
Confidence 34444444444443 4578999999999999888889999999999999998665443 246788999999999999
Q ss_pred CCCCCCCC-CccCCcccceEeecCCCCcc-cCcc--ccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCCC
Q 041079 557 CKGLKKLP-EISSLSNIEKIILSGTAIEE-LPSS--VGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLR 631 (945)
Q Consensus 557 ~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~ 631 (945)
|......| .+.++++|++|+|++|.+.. +|.. ++.+++|++|+|++|...+..| ..++++++|++|+|++|...+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 98777666 67889999999999999985 5655 8999999999999998655433 568999999999999998888
Q ss_pred ccCCccCCc--ccCccccccCCCCcc-CCccccCCCC------CcEEEcccCCCCccCc---------------------
Q 041079 632 RFPEEIGNV--EASNSLYAYGTASSE-VPSSIVRSNN------FRFLSFRESRGDKQMG--------------------- 681 (945)
Q Consensus 632 ~lp~~l~~l--~~L~~L~l~~~~~~~-lp~~l~~l~~------L~~L~l~~~~~~~~~~--------------------- 681 (945)
..|..++.+ ++|+.|++++|.+.. .|..+..+.+ |+.|++++|......+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 778777776 778888888777543 4444444443 7777777663211110
Q ss_pred -----------------------------------cccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECC
Q 041079 682 -----------------------------------LSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLR 725 (945)
Q Consensus 682 -----------------------------------~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls 725 (945)
.....+..+..+++|+.|+|++|.+..+ |..+..+++|++|+|+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 0011233455566666677766666654 4456667777777777
Q ss_pred CCCCccc-chhhhCCCCCCEEeeccCCCCcccCC-c---ccccceEeeccCc
Q 041079 726 RNNFERV-PESIIQLSKLNYLYLSYCQRLQSLPE-L---PCNLILLYADHCT 772 (945)
Q Consensus 726 ~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~ 772 (945)
+|.++.+ |..+..+++|+.|+|++|.. ..++. . .++|+.|++++|.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCC
Confidence 7776654 45666677777777777653 33332 1 4667777777663
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=4e-22 Score=243.37 Aligned_cols=285 Identities=20% Similarity=0.113 Sum_probs=196.9
Q ss_pred chhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccc--cccceeeecCCCCCCCCC-Cc
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYL--KELVILNLRGCKGLKKLP-EI 566 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l--~~L~~L~L~~~~~l~~lp-~~ 566 (945)
...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|..-........+..+ ..|+.|+|++|......| .+
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 345667777777777777777766666777777777777766431111111122222 467777777777655555 45
Q ss_pred cCCcccceEeecCCCCc-ccC-ccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCC--CccCCccCCccc
Q 041079 567 SSLSNIEKIILSGTAIE-ELP-SSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNL--RRFPEEIGNVEA 642 (945)
Q Consensus 567 ~~l~~L~~L~Ls~~~i~-~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~--~~lp~~l~~l~~ 642 (945)
..+++|++|+|++|.+. .+| ..+..+++|++|++++|......+..+..+++|++|++++|... +.+|..++++++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 66888888888888876 455 46777888888888888755555667777888888888877653 567778888888
Q ss_pred CccccccCCCCccCCc-cccCCCCCcEEEcccCCCCccCccc--cccccccCCCCCCCEEeccCCCCCccCc-ccCCCCC
Q 041079 643 SNSLYAYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLS--LLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSL 718 (945)
Q Consensus 643 L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~ 718 (945)
|+.|++++|.+..+|. .+..+++|+.|++++|......... ...+..+.++++|+.|+|++|.+..+|. .+..+++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 8888888888777765 4677888888888888643211100 0011235677888888888888888775 4788888
Q ss_pred CCEEECCCCCCcccchh-hhCCCCCCEEeeccCCCCcccCC----cccccceEeeccCccc
Q 041079 719 LEELDLRRNNFERVPES-IIQLSKLNYLYLSYCQRLQSLPE----LPCNLILLYADHCTVL 774 (945)
Q Consensus 719 L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~----l~~~L~~L~~~~c~~L 774 (945)
|+.|+|++|+++.+|.. +..+++|+.|+|++|+.....|. .+++|+.|++++++-.
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 88888888888887764 46788888888888864443332 3467888888877653
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=243.07 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=202.0
Q ss_pred cCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcccc
Q 041079 495 KMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSNIE 573 (945)
Q Consensus 495 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~L~ 573 (945)
.+++++.|++.++.+....+..+..+++|++|+|++|.. ... .+..+.++++|++|+|++|......|. +.++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 467899999999998877777788999999999998864 333 234678899999999999987666664 67899999
Q ss_pred eEeecCCCCcccCcc-ccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 574 KIILSGTAIEELPSS-VGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 574 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+|+|++|.++.+|.. ++.+++|++|+|++|...+..|..++++++|++|+|++|...+ +| ++.+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCc
Confidence 999999999999987 4899999999999998666667789999999999999987654 33 5678889999999998
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccc-------------cccccccCCCCCCCEEeccCCCCCcc-CcccCCCCC
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLS-------------LLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSL 718 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~ 718 (945)
+..++ ...+|+.|++++|......+.. ..-+..+..+++|+.|+|++|.+..+ |..++.+++
T Consensus 204 l~~l~----~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 204 LSTLA----IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp CSEEE----CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccc----CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 76543 3345666666655431110000 00123355677788888888877754 667777888
Q ss_pred CCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCc
Q 041079 719 LEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCT 772 (945)
Q Consensus 719 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~ 772 (945)
|+.|+|++|.++.+|..+..+++|+.|+|++|... .+|.. +++|+.|++++|.
T Consensus 280 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 88888888888877777777788888888887644 45542 3677788877765
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.8e-22 Score=223.66 Aligned_cols=261 Identities=16% Similarity=0.199 Sum_probs=203.6
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 575 (945)
++|+.|++++|.+.+..+..+..+++|++|++++|.... . .+..+.++++|++|+|++|... .+| .+. ++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-I-HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-E-CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-c-CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence 689999999999887777788999999999999886432 2 2356788899999999998754 555 333 899999
Q ss_pred eecCCCCcccCcc-ccCCccccEEeccccccc--cccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 576 ILSGTAIEELPSS-VGCLSGLVLLHLQACKML--KSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 576 ~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
++++|.++.+|.. +..+++|++|++++|... +..|..+..+ +|++|++++|... .+|..+. ++|++|++++|.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCc
Confidence 9999999988764 889999999999998853 2566677777 9999999998754 4777655 689999999999
Q ss_pred CccCC-ccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcc
Q 041079 653 SSEVP-SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFER 731 (945)
Q Consensus 653 ~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 731 (945)
+..++ ..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+..+|..+..+++|+.|+|++|+++.
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRM------IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCC------CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCc------CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence 88876 578899999999999987422 23345677899999999999999999999999999999999999998
Q ss_pred cchh-hhC------CCCCCEEeeccCCCC--cccCCc---ccccceEeeccCc
Q 041079 732 VPES-IIQ------LSKLNYLYLSYCQRL--QSLPEL---PCNLILLYADHCT 772 (945)
Q Consensus 732 lp~~-i~~------l~~L~~L~L~~c~~l--~~lp~l---~~~L~~L~~~~c~ 772 (945)
+|.. +.. .++|+.|++++|+.. ...|.. .++|+.|++++|.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8742 322 467899999999865 223322 3556777776653
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.2e-22 Score=231.52 Aligned_cols=256 Identities=18% Similarity=0.243 Sum_probs=169.0
Q ss_pred hccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCccc
Q 041079 493 FTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNI 572 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 572 (945)
|..+++|+.|++++|.+.+..+ +..+++|+.|++++|.. ... ..+.++++|+.|++++ ....++.+.++++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L 179 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDI---SALSGLTSLQQLSFGN--QVTDLKPLANLTTL 179 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEE-CCC---GGGTTCTTCSEEEEEE--SCCCCGGGTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCcc-CCC---hhhccCCcccEeecCC--cccCchhhccCCCC
Confidence 4455555555555554443322 44555555555554431 111 1234444444445432 12233346677888
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
++|++++|.++.++. +..+++|++|++++|...+ ++. ++.+++|++|++++|...+ + ..+..+++|+.|++++|.
T Consensus 180 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 180 ERLDISSNKVSDISV-LAKLTNLESLIATNNQISD-ITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC
T ss_pred CEEECcCCcCCCChh-hccCCCCCEEEecCCcccc-ccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCc
Confidence 888888888887754 7788888888888887433 333 6678888888888876543 3 346777888888888888
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
+..++. +..+++|+.|++++|..... +. +..+++|+.|++++|.+..++. ++.+++|+.|+|++|+++.+
T Consensus 255 l~~~~~-~~~l~~L~~L~l~~n~l~~~-------~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 255 ISNLAP-LSGLTKLTELKLGANQISNI-------SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCCCC-------GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred cccchh-hhcCCCCCEEECCCCccCcc-------cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 777765 77888888888888764221 11 5667888888888888887765 67788888888888888876
Q ss_pred chhhhCCCCCCEEeeccCCCCcccCCc--ccccceEeeccCcc
Q 041079 733 PESIIQLSKLNYLYLSYCQRLQSLPEL--PCNLILLYADHCTV 773 (945)
Q Consensus 733 p~~i~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~ 773 (945)
+. +..+++|+.|++++|+.. .++.+ .++|+.|++++|..
T Consensus 325 ~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 325 SP-VSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC
T ss_pred hh-hccCccCCEeECCCCccC-CchhhccCCCCCEEeCCCCcc
Confidence 64 678888888888888643 34443 36788888887754
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=6.7e-22 Score=218.89 Aligned_cols=262 Identities=14% Similarity=0.150 Sum_probs=207.3
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
++|+.|++++|.+.+..+..+..+++|++|++++|.... . .+..+.++++|++|+|++|... .+|... .++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-I-SPGAFAPLVKLERLYLSKNQLK-ELPEKM-PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-B-CTTTTTTCTTCCEEECCSSCCS-BCCSSC-CTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-e-CHHHhcCCCCCCEEECCCCcCC-ccChhh-cccccEEE
Confidence 689999999999988777788999999999999886433 2 2456788999999999998744 555322 27999999
Q ss_pred ecCCCCcccCc-cccCCccccEEecccccccc--ccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCC
Q 041079 577 LSGTAIEELPS-SVGCLSGLVLLHLQACKMLK--SLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 577 Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+++|.++.++. .+..+++|++|++++|.... ..|..+.++++|++|++++|... .+|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence 99999998776 48899999999999988532 56677888999999999998654 5776654 7899999999998
Q ss_pred ccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 654 SEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 654 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
..+ |..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+..+|..+..+++|++|+|++|+++.+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSIS------AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCC------EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCc------eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCcc
Confidence 877 568899999999999999742 2233456788999999999999999999999999999999999999988
Q ss_pred chh-hh------CCCCCCEEeeccCCCCc-ccC-Cc---ccccceEeeccC
Q 041079 733 PES-II------QLSKLNYLYLSYCQRLQ-SLP-EL---PCNLILLYADHC 771 (945)
Q Consensus 733 p~~-i~------~l~~L~~L~L~~c~~l~-~lp-~l---~~~L~~L~~~~c 771 (945)
|.. +. ..+.|+.|++++|+... .++ .. ..+++.++++++
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 743 22 34789999999998642 222 21 356777777664
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.1e-21 Score=239.51 Aligned_cols=287 Identities=20% Similarity=0.197 Sum_probs=153.9
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCc-----cCC--CCCCCccccccc
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFT-----KTP--KPSFIPYLKELV 550 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~-----~~~--~~~~~~~l~~L~ 550 (945)
++++.+....+.+..|..+++|+.|++++|.+.+..+..+..+++|+.|+++++.... ..| ....+.++++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 4555555555556677777777777777777776666666677777777776543211 111 011344566666
Q ss_pred eeeecCCCCCCCCC-CccCCcccceEeecCC----------------------------CCccc-CccccCCccccEEec
Q 041079 551 ILNLRGCKGLKKLP-EISSLSNIEKIILSGT----------------------------AIEEL-PSSVGCLSGLVLLHL 600 (945)
Q Consensus 551 ~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~----------------------------~i~~l-p~~i~~L~~L~~L~L 600 (945)
+|+|++|......+ .+.++++|++|++++| .+..+ |..+..+++|+.|++
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 66666665544443 3445555666555554 34322 334445555555555
Q ss_pred cccccccccC-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCC---ccCCccccCCCCCcEEEcccCCC
Q 041079 601 QACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTAS---SEVPSSIVRSNNFRFLSFRESRG 676 (945)
Q Consensus 601 ~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~---~~lp~~l~~l~~L~~L~l~~~~~ 676 (945)
++|...+.+| ..+.++++|++|++++|...+..+..+..+++|+.|++++|.+ +.+|..+..+++|+.|++++|..
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 5554333333 3444555555555555544444444455555555555555543 23455555566666666665542
Q ss_pred CccCccccccccccCCCCCCCEEeccCCCCCccCc---------ccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEe
Q 041079 677 DKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE---------SLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLY 746 (945)
Q Consensus 677 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~---------~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~ 746 (945)
. ...+..+.++++|+.|++++|.+..++. .+..+++|+.|+|++|+++.+|. .+..+++|+.|+
T Consensus 493 ~------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 493 A------NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp C------CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred C------cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 1 1122334555666666666666554321 24555666666666666666654 355666666666
Q ss_pred eccCCCCcccCCc----ccccceEeeccC
Q 041079 747 LSYCQRLQSLPEL----PCNLILLYADHC 771 (945)
Q Consensus 747 L~~c~~l~~lp~l----~~~L~~L~~~~c 771 (945)
|++|+.. .+|.. .++|+.|++++|
T Consensus 567 Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 567 LGLNNLN-TLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCC-cCCHhHhCCCCCCCEEECCCC
Confidence 6665533 33321 255666666655
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=227.18 Aligned_cols=256 Identities=17% Similarity=0.184 Sum_probs=197.5
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~L~~L 575 (945)
++|+.|++++|.+.+..+..+..+++|+.|++++|.. ... .+..+.++++|++|+|++|......+. +.++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc-Ccc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 4789999999988876666788899999999988754 332 234577888899999998875543333 6779999999
Q ss_pred eecCCCCcccCc--cccCCccccEEecccccccccc-CcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 576 ILSGTAIEELPS--SVGCLSGLVLLHLQACKMLKSL-PCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 576 ~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+|++|.++.+|. .+..+++|++|++++|..++.+ |..+.++++|++|++++|...+..|..++++++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 999999998887 6888999999999998656655 4568889999999999988877778889999999999999998
Q ss_pred CccCCccc-cCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC-----ccCcccCCCCCCCEEECCC
Q 041079 653 SSEVPSSI-VRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT-----RLPESLGRLSLLEELDLRR 726 (945)
Q Consensus 653 ~~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~Ls~ 726 (945)
+..+|..+ ..+++|+.|++++|........ . + ........++.++++++.+. .+|..+..+++|+.|+|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~-l-~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFS-E-L-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred cccchhhhhhhcccccEEECCCCcccccccc-c-c-ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 88887654 3588999999998874322111 0 0 01234566788888887776 3788888899999999999
Q ss_pred CCCcccchhh-hCCCCCCEEeeccCCCCcccC
Q 041079 727 NNFERVPESI-IQLSKLNYLYLSYCQRLQSLP 757 (945)
Q Consensus 727 n~l~~lp~~i-~~l~~L~~L~L~~c~~l~~lp 757 (945)
|+++.+|..+ ..+++|+.|+|++|+.....|
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999888775 788999999999987655443
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=3e-23 Score=227.70 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=197.3
Q ss_pred hhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCc-------cccccceeeecCCCCCCCCC
Q 041079 492 TFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIP-------YLKELVILNLRGCKGLKKLP 564 (945)
Q Consensus 492 ~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~-------~l~~L~~L~L~~~~~l~~lp 564 (945)
.+..+++|+.|++++|.+ .+|..+... |+.|+|++|.. .....+..+. ++++|++|+|++|...+.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTV-RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEE-EEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--Hhhcccccccc-cCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 466788999999999998 445444333 88888887654 2222222222 57899999999999877777
Q ss_pred C-c--cCCcccceEeecCCCCcccCccccCC-----ccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCc--cC
Q 041079 565 E-I--SSLSNIEKIILSGTAIEELPSSVGCL-----SGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRR--FP 634 (945)
Q Consensus 565 ~-~--~~l~~L~~L~Ls~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~--lp 634 (945)
. + ..+++|++|+|++|.++.+|..++.+ ++|++|+|++|...+..|..++++++|++|++++|...+. +|
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 3 4 67999999999999999888888877 8999999999986555558899999999999999987665 34
Q ss_pred Ccc--CCcccCccccccCCCCccCCc----cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc
Q 041079 635 EEI--GNVEASNSLYAYGTASSEVPS----SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR 708 (945)
Q Consensus 635 ~~l--~~l~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 708 (945)
..+ +.+++|++|++++|.+..++. .+..+++|+.|++++|......+ ...+..+++|+.|+|++|.++.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----APSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----CSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----hhhhhhcCCCCEEECCCCccCh
Confidence 444 889999999999999885442 23578999999999998533221 1234567899999999999999
Q ss_pred cCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCC
Q 041079 709 LPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 709 lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|+..
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 998877 899999999999999886 889999999999999754
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=3.9e-23 Score=227.36 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=129.0
Q ss_pred chhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCC
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSL 569 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l 569 (945)
...+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.... .+. +..+++|++|+|++|... .+ ..+
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~---~~~l~~L~~L~Ls~n~l~-~l---~~~ 98 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD---LESLSTLRTLDLNNNYVQ-EL---LVG 98 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE---ETTCTTCCEEECCSSEEE-EE---EEC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh---hhhcCCCCEEECcCCccc-cc---cCC
Confidence 3445566677777777777776666666677777777776664322 111 445556666666665422 11 223
Q ss_pred cccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCcc-CCcccCccccc
Q 041079 570 SNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEI-GNVEASNSLYA 648 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l-~~l~~L~~L~l 648 (945)
++|++|++++|.++.++.. .+++|++|++++|......|..++.+++|++|++++|...+..|..+ ..+++|++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 5666666666666555432 24556666666655333333345555666666666655444434433 24555555555
Q ss_pred cCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCC
Q 041079 649 YGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNN 728 (945)
Q Consensus 649 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~ 728 (945)
++|.+..+|.. ..+++|+.|++++|... .+|..+..+++|+.|++++|.+..+|..+..+++|+.|+|++|.
T Consensus 177 ~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 177 QYNFIYDVKGQ-VVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTSCCCEEECC-CCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCcCcccccc-cccccCCEEECCCCcCC-------cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 55555555332 23555555555555421 11222344455555555555555555555555555555555555
Q ss_pred Cc--ccchhhhCCCCCCEEeeccCC
Q 041079 729 FE--RVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 729 l~--~lp~~i~~l~~L~~L~L~~c~ 751 (945)
+. .+|.++..+++|+.|++++|+
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECCCch
Confidence 54 444455555555555555443
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.5e-20 Score=215.05 Aligned_cols=251 Identities=16% Similarity=0.126 Sum_probs=196.3
Q ss_pred hhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCc
Q 041079 491 DTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLS 570 (945)
Q Consensus 491 ~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~ 570 (945)
..+..+++|+.|+++++.+.+. + .+..+++|++|++++|+ +...+ +.++++|++|+|++|.... +| +.+++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~-~~-~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTN-LD-VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC-CC-CTTCT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCce-ee-cCCCC
Confidence 3567788899999999888764 3 67888999999998875 34332 6778888999999887443 44 77889
Q ss_pred ccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccC
Q 041079 571 NIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYG 650 (945)
Q Consensus 571 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 650 (945)
+|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++++|...+.+ .++.+++|++|++++
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999999998876 8888999999999887 44554 778899999999988777776 477888899999999
Q ss_pred CCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCc
Q 041079 651 TASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 651 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 730 (945)
|.+..+| +..+++|+.|++++|..... .+..+++|+.|++++|+++.+| ++.+++|+.|+|++|+++
T Consensus 180 n~l~~l~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 180 NKITELD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp SCCCCCC--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred Cccceec--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9988887 78888999999988874321 2567888999999999998887 788899999999999888
Q ss_pred ccchhhhCCCC----------CCEEeeccCCCCcccCCc-ccccceEeeccCc
Q 041079 731 RVPESIIQLSK----------LNYLYLSYCQRLQSLPEL-PCNLILLYADHCT 772 (945)
Q Consensus 731 ~lp~~i~~l~~----------L~~L~L~~c~~l~~lp~l-~~~L~~L~~~~c~ 772 (945)
.+| +..+++ |+.|++++|+.++.+|.. .++|+.|++++|.
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT
T ss_pred CcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCc
Confidence 776 334444 455566666666666632 3788888888885
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=211.40 Aligned_cols=223 Identities=18% Similarity=0.211 Sum_probs=143.2
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCC---CCCccCCcccceEeecCCCCcccCccccCCccccE
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKK---LPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVL 597 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~---lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 597 (945)
++|+.|++++|+. ..++ ...+.++++|++|+|++|..... .+.+..+++|++|+|++|.+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l-~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKL-QSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCC-CCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCcc-CccC-HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 4566667766543 2222 23356667777777777654322 12445577777777777777777777777777888
Q ss_pred EeccccccccccC--cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCcc--CCccccCCCCCcEEEccc
Q 041079 598 LHLQACKMLKSLP--CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE--VPSSIVRSNNFRFLSFRE 673 (945)
Q Consensus 598 L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~ 673 (945)
|++++|. +..++ ..+.++++|++|++++|...+..|..+..+++|++|++++|.+.. +|..+..+++|+.|++++
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 8877776 34443 356677777777777777666666667777777777777777654 566666777777777776
Q ss_pred CCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCcc-cchhhhCCC-CCCEEeeccC
Q 041079 674 SRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFER-VPESIIQLS-KLNYLYLSYC 750 (945)
Q Consensus 674 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L~L~~c 750 (945)
|... ...|..+..+++|+.|++++|.+..++. .+..+++|+.|+|++|+++. .|..+..++ +|+.|+|++|
T Consensus 185 n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 185 CQLE------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SCCC------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCcC------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 6531 2234445566677777777777666543 55666677777777776663 344555553 6777777666
Q ss_pred CC
Q 041079 751 QR 752 (945)
Q Consensus 751 ~~ 752 (945)
+.
T Consensus 259 ~~ 260 (306)
T 2z66_A 259 DF 260 (306)
T ss_dssp CE
T ss_pred Ce
Confidence 54
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5e-21 Score=220.74 Aligned_cols=248 Identities=17% Similarity=0.157 Sum_probs=140.6
Q ss_pred chhhccCcCccccccccccCCCCCccccccCcce-------------eEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKL-------------KQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L-------------~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
+..|+++++|+.|+++++.+.+..|..+..+.+| +.|++++|. ++.+|.. .++|++|++++
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~-----~~~L~~L~l~~ 100 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL-----PPHLESLVASC 100 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC-----CTTCSEEECCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC-----cCCCCEEEccC
Confidence 4567888888888888888777777777766654 778887765 3443331 25677777777
Q ss_pred CCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCc
Q 041079 557 CKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEE 636 (945)
Q Consensus 557 ~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~ 636 (945)
|...+ +|.. +++|++|++++|.++.+|... ++|++|++++|. +..+| .++++++|++|++++|... .+|..
T Consensus 101 n~l~~-lp~~--~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~ 171 (454)
T 1jl5_A 101 NSLTE-LPEL--PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL 171 (454)
T ss_dssp SCCSS-CCCC--CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS-CCCCC
T ss_pred CcCCc-cccc--cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcCc-ccCCC
Confidence 66443 5532 366777777777766655422 567777777765 34466 4667777777777766543 35544
Q ss_pred cCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCC
Q 041079 637 IGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRL 716 (945)
Q Consensus 637 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l 716 (945)
+ .+|++|++++|.+..+| .+..+++|+.|++++|.... +|. ..++|+.|++++|.+..+|. ++.+
T Consensus 172 ~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-------l~~---~~~~L~~L~l~~n~l~~lp~-~~~l 236 (454)
T 1jl5_A 172 P---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-------LPD---LPLSLESIVAGNNILEELPE-LQNL 236 (454)
T ss_dssp C---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-------CCC---CCTTCCEEECCSSCCSSCCC-CTTC
T ss_pred c---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-------CCC---CcCcccEEECcCCcCCcccc-cCCC
Confidence 3 35666777776666666 46666777777776665321 111 11355555555555555552 5555
Q ss_pred CCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcccccceEeeccC
Q 041079 717 SLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHC 771 (945)
Q Consensus 717 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c 771 (945)
++|++|++++|+++.+|.. +++|+.|++++|+. ..+|..+++|+.|++++|
T Consensus 237 ~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL-TDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCccccc---ccccCEEECCCCcc-cccCcccCcCCEEECcCC
Confidence 5555555555555555432 24455555555442 224444444444444443
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=232.23 Aligned_cols=269 Identities=16% Similarity=0.133 Sum_probs=137.4
Q ss_pred CccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEe
Q 041079 498 KLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKII 576 (945)
Q Consensus 498 ~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~ 576 (945)
+++.|++++|.+.+..+..+..+++|++|++++|+. ... .+..+.++++|++|+|++|......| .+.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-CEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcC-Ccc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 455555555555444444445555555555554432 221 12234445555555555554333332 344455555555
Q ss_pred ecCCCCcccCc-cccCCccccEEecccccccc-ccCcccCCCCCCCEEeccCCCCCCccCCccCCcccC----ccccccC
Q 041079 577 LSGTAIEELPS-SVGCLSGLVLLHLQACKMLK-SLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEAS----NSLYAYG 650 (945)
Q Consensus 577 Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L----~~L~l~~ 650 (945)
+++|.++.+|. .++.+++|++|++++|.... .+|..++++++|++|++++|...+..|..++.+.+| ..|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 55555554443 35555555555555554322 245555555555555555554444334444444444 4455555
Q ss_pred CCCccCCccccCCCCCcEEEcccCCCCc------------------------------cC--------------------
Q 041079 651 TASSEVPSSIVRSNNFRFLSFRESRGDK------------------------------QM-------------------- 680 (945)
Q Consensus 651 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~------------------------------~~-------------------- 680 (945)
|.+..++.......+|+.|++++|.... ..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 5544444333333344444444431100 00
Q ss_pred --ccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC
Q 041079 681 --GLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE 758 (945)
Q Consensus 681 --~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 758 (945)
......+..+..+++|+.|++++|.+..+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.....++.
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc
Confidence 011223344566777888888888777777777777 78888888887777765 3566666666666655444432
Q ss_pred -cccccceEeeccC
Q 041079 759 -LPCNLILLYADHC 771 (945)
Q Consensus 759 -l~~~L~~L~~~~c 771 (945)
..++|+.|++++|
T Consensus 344 ~~~~~L~~L~l~~n 357 (570)
T 2z63_A 344 VDLPSLEFLDLSRN 357 (570)
T ss_dssp CBCTTCCEEECCSS
T ss_pred ccCCCCCEEeCcCC
Confidence 2345555555544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.1e-20 Score=218.54 Aligned_cols=222 Identities=21% Similarity=0.209 Sum_probs=172.0
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCcc-ccCCccccEE
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPSS-VGCLSGLVLL 598 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L 598 (945)
++|+.|+|++|+... + .+..+.++++|++|+|++|......+ .+.++++|++|+|++|.++.+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~-~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM-I-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCE-E-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCce-E-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 567778887765422 2 23456778888888888887555444 566788888888888888877765 7788888888
Q ss_pred eccccccccccC-cccCCCCCCCEEeccCCCCCCccCC-ccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCC
Q 041079 599 HLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPE-EIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRG 676 (945)
Q Consensus 599 ~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 676 (945)
+|++|. +..+| ..+.++++|++|++++|..++.+|. .+..+++|++|++++|.+..+| .+..+++|+.|++++|..
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 888887 44554 4677888888888888887777776 4788888888888888888886 477888899999988874
Q ss_pred CccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCC
Q 041079 677 DKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 677 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 752 (945)
. ...|..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 231 ~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 P------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp S------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred c------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 2 33455677888999999999998865 5678888999999999999988874 467788999999998863
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.1e-22 Score=219.05 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=189.5
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
++|+.|+++++.+....+..+..+++|+.|++++|........+..+..+++|++|+|++|......+.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 68999999999998766666889999999999988643211112234467899999999997554333677899999999
Q ss_pred ecCCCCcccCc--cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCC-ccCCccCCcccCccccccCCCC
Q 041079 577 LSGTAIEELPS--SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLR-RFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 577 Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~-~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+++|.++.++. .+..+++|++|++++|......|..+.++++|++|++++|...+ .+|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 99999998875 78999999999999998777777888899999999999988766 5889999999999999999998
Q ss_pred ccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc-cCcccCCC-CCCCEEECCCCCCc
Q 041079 654 SEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR-LPESLGRL-SLLEELDLRRNNFE 730 (945)
Q Consensus 654 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l-~~L~~L~Ls~n~l~ 730 (945)
..+ |..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+.. .|..+..+ ++|++|+|++|.++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFS------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSB------CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCc------cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 887 6688999999999999998532 223346788999999999999996 56678887 49999999999987
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=217.18 Aligned_cols=223 Identities=18% Similarity=0.196 Sum_probs=177.2
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCc-cccCCccccEE
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLL 598 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 598 (945)
++++.|+|++|+. ..+ ....+.++++|++|+|++|......+ .+.++++|++|+|++|.++.+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQI-QII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCC-CEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcC-Cee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 5677888887754 222 23456788888888888887554443 56678999999999999988876 58889999999
Q ss_pred eccccccccccCcccCCCCCCCEEeccCCCCCCccCC-ccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCC
Q 041079 599 HLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPE-EIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGD 677 (945)
Q Consensus 599 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 677 (945)
+|++|......+..+.++++|++|+|++|..++.+|. .+.++++|++|++++|.+..+|. +..+++|+.|++++|..
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l- 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL- 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC-
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc-
Confidence 9999884433344678899999999998888877776 57889999999999999888874 78889999999999863
Q ss_pred ccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCC
Q 041079 678 KQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 678 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 752 (945)
....+..+.++++|+.|+|++|.+..+ +..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 220 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 -----SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -----CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -----CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 233456678889999999999999975 5578889999999999999998875 467889999999998874
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=6.1e-21 Score=230.71 Aligned_cols=127 Identities=22% Similarity=0.242 Sum_probs=98.7
Q ss_pred ccccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC
Q 041079 477 CLDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG 556 (945)
Q Consensus 477 ~l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 556 (945)
.+|++.+....+.+..|.++++|++|++++|.+.+..+..+.++++|++|+|++|+ +..++ +..+.++++|++|+|++
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~-~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC-GGGGTTCTTCCEEECTT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC-HHHhcCCCCCCEEECCC
Confidence 47777777777888889999999999999988887777778888999999998875 34333 24567788888889988
Q ss_pred CCCCCCCC-CccCCcccceEeecCCCCcc--cCccccCCccccEEecccccc
Q 041079 557 CKGLKKLP-EISSLSNIEKIILSGTAIEE--LPSSVGCLSGLVLLHLQACKM 605 (945)
Q Consensus 557 ~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~ 605 (945)
|......+ .+.++++|++|+|++|.++. +|..++.+++|++|+|++|..
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 87544433 46778888888888888874 567788888888888887753
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=3.6e-20 Score=213.58 Aligned_cols=239 Identities=21% Similarity=0.235 Sum_probs=145.2
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
++|+.|++++|.+.+ ++ .+..+++|++|++++|+. ..+|.. ..+|++|++++|... .+|.+.++++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l-~~lp~~-----~~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL-KKLPDL-----PPSLEFIAAGNNQLE-ELPELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC-SCCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcC-cccCCC-----cccccEEECcCCcCC-cCccccCCCCCCEEE
Confidence 467777777776665 34 466777777777776642 333221 236666677776543 356666677777777
Q ss_pred ecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC
Q 041079 577 LSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV 656 (945)
Q Consensus 577 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l 656 (945)
+++|.++.+|... .+|++|++++|. +..+|. ++++++|++|++++|... .+|.. +.+|++|++++|.+..+
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCCcCCcCCCCc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCccccc
Confidence 7777777666533 467777777765 446663 667777777777776543 35543 35677777777776666
Q ss_pred CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhh
Q 041079 657 PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESI 736 (945)
Q Consensus 657 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i 736 (945)
|.. +++|+.|++++|.... ++. -.++|+.|++++|.+..++.. .++|+.|+|++|+++.+|..
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~-------l~~---~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~- 335 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSG-------LSE---LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL- 335 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSE-------ESC---CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC-
T ss_pred Ccc---cCcCCEEECcCCccCc-------ccC---cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc-
Confidence 653 3667777777765322 010 114566666666666554421 24667777777766666643
Q ss_pred hCCCCCCEEeeccCCCCcccCCcccccceEeeccCcc
Q 041079 737 IQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHCTV 773 (945)
Q Consensus 737 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~ 773 (945)
+++|+.|++++|+. +.+|..+++|+.|++++|.-
T Consensus 336 --~~~L~~L~L~~N~l-~~lp~~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 336 --PPRLERLIASFNHL-AEVPELPQNLKQLHVEYNPL 369 (454)
T ss_dssp --CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCC
T ss_pred --CCcCCEEECCCCcc-ccccchhhhccEEECCCCCC
Confidence 46677777776653 35666666677777766543
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=7.5e-20 Score=217.44 Aligned_cols=250 Identities=20% Similarity=0.151 Sum_probs=172.4
Q ss_pred cccccceeeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCC
Q 041079 478 LDMSKVKEMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGC 557 (945)
Q Consensus 478 l~~~~~~~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 557 (945)
++++.+....++...+ ++|+.|++++|.+..... .+++|++|+|++|+ ++.+|. .+++|++|+|++|
T Consensus 45 L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN 111 (622)
T ss_dssp EECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECSC
T ss_pred EEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcCC
Confidence 4455444444443332 688888888888774332 56788888888775 444443 5677888888887
Q ss_pred CCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCcc
Q 041079 558 KGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEI 637 (945)
Q Consensus 558 ~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l 637 (945)
.. ..+|. .+++|++|++++|.++.+|.. +++|++|+|++|. +..+|. .+++|+.|++++|... .+|
T Consensus 112 ~l-~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~-~l~--- 177 (622)
T 3g06_A 112 PL-THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLT-SLP--- 177 (622)
T ss_dssp CC-CCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCC---
T ss_pred cC-CCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCC-CCc---
Confidence 64 34554 577888888888888888874 3788888888886 556665 3467788888876543 466
Q ss_pred CCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCC
Q 041079 638 GNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLS 717 (945)
Q Consensus 638 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~ 717 (945)
..+++|+.|++++|.+..+|.. +++|+.|++++|... . +|. .+++|+.|+|++|.++.+| ..++
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~------l~~---~~~~L~~L~Ls~N~L~~lp---~~l~ 241 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-S------LPA---LPSGLKELIVSGNRLTSLP---VLPS 241 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-S------CCC---CCTTCCEEECCSSCCSCCC---CCCT
T ss_pred ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-c------cCC---CCCCCCEEEccCCccCcCC---CCCC
Confidence 4456788888888888777754 367788888777642 1 121 2467888888888888777 4557
Q ss_pred CCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc---ccccceEeeccCccc
Q 041079 718 LLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL---PCNLILLYADHCTVL 774 (945)
Q Consensus 718 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L 774 (945)
+|+.|+|++|+++.+|. .+++|+.|+|++|+.. .+|.. .++|+.|++++|+.-
T Consensus 242 ~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 78888888888887776 5677888888887644 66643 366777888777643
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-22 Score=223.65 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=205.7
Q ss_pred CccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEee
Q 041079 498 KLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIIL 577 (945)
Q Consensus 498 ~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L 577 (945)
+++.+++..+.++..+...+..+++|+.|++++|+.. .. .+..+.++++|++|+|++|...... .+..+++|++|+|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QI-SAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CC-CHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cC-CHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEEC
Confidence 3445555555555544455667889999999988643 22 2245678899999999999865444 4888999999999
Q ss_pred cCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCC
Q 041079 578 SGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVP 657 (945)
Q Consensus 578 s~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp 657 (945)
++|.++.+|. +++|++|++++|. +..++.. .+++|++|++++|...+..|..++.+++|++|++++|.+..++
T Consensus 88 s~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cCCccccccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9999988774 4899999999998 4555543 4789999999999888777778899999999999999988764
Q ss_pred -ccc-cCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchh
Q 041079 658 -SSI-VRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPES 735 (945)
Q Consensus 658 -~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 735 (945)
..+ ..+++|+.|++++|..... +. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++.+|..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-------~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-------KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-------EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-------cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH
Confidence 344 4789999999999984321 21 2348899999999999999998899999999999999999999999
Q ss_pred hhCCCCCCEEeeccCCCC-cccCCc---ccccceEeeccCcccc
Q 041079 736 IIQLSKLNYLYLSYCQRL-QSLPEL---PCNLILLYADHCTVLK 775 (945)
Q Consensus 736 i~~l~~L~~L~L~~c~~l-~~lp~l---~~~L~~L~~~~c~~L~ 775 (945)
+..+++|+.|+|++|+.. ..+|.. .++|+.|++.+|..++
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999999999999999876 455543 3556777777665544
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=5.8e-20 Score=198.72 Aligned_cols=202 Identities=24% Similarity=0.292 Sum_probs=162.3
Q ss_pred cccceeeecCCCCCCCCC-CccCCcccceEeecCCCCccc-CccccCCccccEEecccccccccc-CcccCCCCCCCEEe
Q 041079 547 KELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEEL-PSSVGCLSGLVLLHLQACKMLKSL-PCSLFKLKSLEDLN 623 (945)
Q Consensus 547 ~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~ 623 (945)
++|+.|+|++|......+ .+..+++|++|+|++|.++.+ |..+..+++|++|++++|..++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 577888888887555444 466788899999998888876 667888899999999988755555 66788889999999
Q ss_pred ccCCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEecc
Q 041079 624 LCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLH 702 (945)
Q Consensus 624 Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 702 (945)
+++|...+..|..+.++++|++|++++|.+..+|.. +..+++|+.|++++|... ...+..+.++++|+.|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS------SVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc------ccCHHHhcCccccCEEECC
Confidence 998887776777888888999999999888887764 778889999999888632 2223346778899999999
Q ss_pred CCCCCcc-CcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCCc
Q 041079 703 NCGVTRL-PESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRLQ 754 (945)
Q Consensus 703 ~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~ 754 (945)
+|.+..+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+...
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 9998875 7788889999999999999998774 58889999999999987543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=9.5e-22 Score=229.03 Aligned_cols=196 Identities=15% Similarity=0.099 Sum_probs=122.0
Q ss_pred CCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCE
Q 041079 542 FIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLED 621 (945)
Q Consensus 542 ~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 621 (945)
.+.++++|++|+|++|......| +..+++|++|+|++|.|+.+|.. ++|++|++++|. +..+|.. .+++|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~-l~~~~~~--~l~~L~~ 124 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN-ISRVSCS--RGQGKKN 124 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC-CCCEEEC--CCSSCEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCc-CCCCCcc--ccCCCCE
Confidence 34445555555555554333232 55566666666666666655532 566666666665 3333322 3566667
Q ss_pred EeccCCCCCCccCCccCCcccCccccccCCCCcc-CCcccc-CCCCCcEEEcccCCCCccCccccccccccCCCCCCCEE
Q 041079 622 LNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE-VPSSIV-RSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSL 699 (945)
Q Consensus 622 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 699 (945)
|+|++|...+..|..++++++|+.|++++|.+.. .|..+. .+++|+.|++++|..... +. ...+++|+.|
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------~~-~~~l~~L~~L 196 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------KG-QVVFAKLKTL 196 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-------EC-CCCCTTCCEE
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-------cc-cccCCCCCEE
Confidence 7776666666556666666667777776666554 333443 567777777777663211 11 2246777777
Q ss_pred eccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCC
Q 041079 700 CLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 700 ~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+|++|.++.+|+.+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 777777777777777777777777777777777777777777777777777755
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.7e-19 Score=214.39 Aligned_cols=238 Identities=24% Similarity=0.296 Sum_probs=195.4
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEe
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKII 576 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 576 (945)
.+++.|+++++.+.. +|..+. ++|+.|++++|+ ++.+|. .+++|++|+|++|. +..+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEE
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEE
Confidence 468999999999874 343333 799999999885 444443 56889999999997 456766 789999999
Q ss_pred ecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC
Q 041079 577 LSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV 656 (945)
Q Consensus 577 Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l 656 (945)
|++|.++.+|. .+++|+.|++++|. +..+|.. +++|++|+|++|.. ..+|.. +.+|+.|++++|.+..+
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLTSL 176 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSCC
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCc---cCCCCEEECCCCCCCCC
Confidence 99999999998 57899999999997 7778874 58999999999865 456654 45799999999999999
Q ss_pred CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhh
Q 041079 657 PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESI 736 (945)
Q Consensus 657 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i 736 (945)
| ..+++|+.|++++|.... +|. .+++|+.|++++|.++.+|.. +++|+.|+|++|+++.+|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-------l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-------LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-------CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---
T ss_pred c---ccCCCCcEEECCCCCCCC-------CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---
Confidence 8 567899999999997422 222 257899999999999999864 579999999999999998
Q ss_pred hCCCCCCEEeeccCCCCcccCCcccccceEeeccCccccccc
Q 041079 737 IQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHCTVLKSIS 778 (945)
Q Consensus 737 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~l~ 778 (945)
..+++|+.|+|++|+ +..+|..+++|+.|++++|. +..+|
T Consensus 238 ~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~-L~~lp 277 (622)
T 3g06_A 238 VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLP 277 (622)
T ss_dssp CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CCSCC
T ss_pred CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCC-CCcCC
Confidence 567899999999996 56789889999999999984 44554
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=213.90 Aligned_cols=270 Identities=19% Similarity=0.127 Sum_probs=210.6
Q ss_pred ccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEee
Q 041079 499 LRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIIL 577 (945)
Q Consensus 499 Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~L 577 (945)
....+.+++.+...+. .+ .++|+.|++++|+. ...+ ...+.++++|++|+|++|......| .+.++++|++|+|
T Consensus 33 ~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 33 NGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRI-TYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CeEeeCCCCCcccccc-cc--cccCcEEECCCCcC-cccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3345555665554332 22 35899999998864 3333 3457889999999999998665555 5788999999999
Q ss_pred cCCCCcccCcc-ccCCccccEEeccccccccccCc--ccCCCCCCCEEeccCCCCCCcc-CCccCCcccCccccccCCCC
Q 041079 578 SGTAIEELPSS-VGCLSGLVLLHLQACKMLKSLPC--SLFKLKSLEDLNLCRCSNLRRF-PEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 578 s~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~L~l~~~~~ 653 (945)
++|.++.+|.. ++.+++|++|++++|. +..+|. .+.++++|++|++++|...+.+ |..++++++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999999887 8999999999999997 667776 6889999999999999655555 56799999999999999998
Q ss_pred ccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc----ccCCCCCCCEEECCCCC
Q 041079 654 SEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE----SLGRLSLLEELDLRRNN 728 (945)
Q Consensus 654 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~Ls~n~ 728 (945)
..+ |..+..+++|+.|++++|.. ...+ +..+..+++|+.|++++|.+..++. .....+.|+.++|+++.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l-~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQH-ILLL-----EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCS-TTHH-----HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CccCHHHHhccccCCeecCCCCcc-ccch-----hhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 776 77899999999999999974 1111 1123457899999999999986542 23456788999999887
Q ss_pred Cc-----ccchhhhCCCCCCEEeeccCCCCcccCCc----ccccceEeeccCcccccccCcc
Q 041079 729 FE-----RVPESIIQLSKLNYLYLSYCQRLQSLPEL----PCNLILLYADHCTVLKSISGLS 781 (945)
Q Consensus 729 l~-----~lp~~i~~l~~L~~L~L~~c~~l~~lp~l----~~~L~~L~~~~c~~L~~l~~l~ 781 (945)
+. .+|..+..+++|+.|+|++|+.. .+|.. .++|+.|++++++-....+.+.
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~ 321 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCcH
Confidence 76 57889999999999999999754 67752 4789999999988765554443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2e-21 Score=226.21 Aligned_cols=237 Identities=14% Similarity=0.079 Sum_probs=178.9
Q ss_pred cCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccce
Q 041079 495 KMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEK 574 (945)
Q Consensus 495 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 574 (945)
.+++|+.|++++|.+.+..+..+..+++|++|+|++|..... +. +.++++|++|+|++|... .+ ...++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---l~~l~~L~~L~Ls~N~l~-~l---~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD---LESLSTLRTLDLNNNYVQ-EL---LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE---CTTCTTCCEEECCSSEEE-EE---EECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc---cccCCCCCEEEecCCcCC-CC---CCCCCcCE
Confidence 345888888888888887777788888888888887764322 22 667788888888887633 22 23478888
Q ss_pred EeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccC-CcccCccccccCCCC
Q 041079 575 IILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIG-NVEASNSLYAYGTAS 653 (945)
Q Consensus 575 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~l~~~~~ 653 (945)
|++++|.++.+|.. .+++|+.|+|++|...+..|..++++++|++|+|++|...+..|..+. .+++|+.|++++|.+
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 88888888877653 467888888888886666666777888888888888887777777665 688888888888888
Q ss_pred ccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCc--c
Q 041079 654 SEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFE--R 731 (945)
Q Consensus 654 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~ 731 (945)
..+|. ...+++|+.|++++|... .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+. .
T Consensus 182 ~~~~~-~~~l~~L~~L~Ls~N~l~-------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 182 YDVKG-QVVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CEEEC-CCCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccccc-cccCCCCCEEECCCCCCC-------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 77754 335888888888888742 1333466778888888888888888888888888888888888887 6
Q ss_pred cchhhhCCCCCCEEeecc
Q 041079 732 VPESIIQLSKLNYLYLSY 749 (945)
Q Consensus 732 lp~~i~~l~~L~~L~L~~ 749 (945)
+|.++..++.|+.|+++.
T Consensus 254 ~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEeccc
Confidence 777777777777777653
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=2.3e-20 Score=201.98 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=157.5
Q ss_pred CcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCC-Cccc-CccccCCcccc
Q 041079 520 HGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTA-IEEL-PSSVGCLSGLV 596 (945)
Q Consensus 520 l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~L~~L~ 596 (945)
.++|+.|++++|.. ...+ ...+.++++|++|+|++|......| .+..+++|++|+|++|. ++.+ |..+..+++|+
T Consensus 31 ~~~l~~L~l~~n~i-~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRI-SHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcC-CccC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 35677777776653 2222 2345677778888888876554444 56678888888888886 7776 56788888899
Q ss_pred EEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCc-cccCCCCCcEEEcccCC
Q 041079 597 LLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFRESR 675 (945)
Q Consensus 597 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~ 675 (945)
+|++++|......|..+.++++|++|++++|...+..+..++.+++|++|++++|.+..+|. .+..+++|+.|++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 99998888555556778888899999998887765555668888899999999998888876 47889999999999987
Q ss_pred CCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCc
Q 041079 676 GDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 676 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 730 (945)
.. ...|..+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 189 l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 189 VA------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CC------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cc------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 42 3345667889999999999999998875 5899999999999999887
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=6.5e-20 Score=212.15 Aligned_cols=224 Identities=23% Similarity=0.266 Sum_probs=191.8
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~L~~L 575 (945)
++|+.|++++|.+.+..+..+.++++|+.|+|++|+. ..+ .+..+.++++|++|+|++|......+. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc-CCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 6899999999999988888899999999999998864 333 345678899999999999986544443 6779999999
Q ss_pred eecCCCCcccCc-cccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCC
Q 041079 576 ILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 576 ~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+|++|.|+.+|. .+..+++|+.|++++|..++.+|. .+.++++|++|+|++|... .+| .+..+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence 999999998876 688999999999999888888886 4788999999999998764 455 488999999999999998
Q ss_pred ccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCc
Q 041079 654 SEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 654 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 730 (945)
..+ |..+..+++|+.|++++|... ...+..+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVS------LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCc------eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 877 567999999999999999742 3345667889999999999999998775 5688999999999999875
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=211.51 Aligned_cols=224 Identities=22% Similarity=0.257 Sum_probs=190.9
Q ss_pred cCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceE
Q 041079 497 PKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKI 575 (945)
Q Consensus 497 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 575 (945)
++++.|++++|.+....+..+.++++|+.|+|++|.. ..+ .+..+.++++|++|+|++|......+ .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-Ccc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 6899999999999888778899999999999998864 332 23567789999999999997554444 47789999999
Q ss_pred eecCCCCcccCc-cccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCC
Q 041079 576 ILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTAS 653 (945)
Q Consensus 576 ~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 653 (945)
+|++|.|+.+|. .+..+++|++|+|++|+.++.+|. .+.++++|++|+|++|.. ..+|. +..+++|++|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC-CTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc-cCCCcccCEEECCCCcc
Confidence 999999998876 688999999999999888888876 578899999999999865 46664 78999999999999998
Q ss_pred ccC-CccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCc
Q 041079 654 SEV-PSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 654 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 730 (945)
..+ |..+..+++|+.|++++|... ...+..+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQ------VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCC------EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCcee------EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 877 568999999999999999742 3345567889999999999999998775 5688999999999999775
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.3e-19 Score=192.99 Aligned_cols=204 Identities=18% Similarity=0.116 Sum_probs=155.1
Q ss_pred cccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 547 KELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 547 ~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
++|++|+|++|......+ .+.++++|++|+|++|.++.++. .+..+++|++|+|++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357777888776554444 56678888888888888887665 5788888888888888754445566788888888888
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCcc--CCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCC----E
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSE--VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLK----S 698 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~----~ 698 (945)
++|...+..+..++++++|++|++++|.+.. +|..+..+++|+.|++++|..... .+..+..+++|+ .
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE------CGGGGHHHHTCTTCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC------CHHHhhhhhhcccccee
Confidence 8877666555568888888888888888776 677888888899999888874321 222334444555 8
Q ss_pred EeccCCCCCccCcccCCCCCCCEEECCCCCCcccchh-hhCCCCCCEEeeccCCCCccc
Q 041079 699 LCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPES-IIQLSKLNYLYLSYCQRLQSL 756 (945)
Q Consensus 699 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~l 756 (945)
|++++|.+..+|.......+|+.|+|++|+++.+|.. +..+++|+.|+|++|+.....
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9999999998887776677899999999999988865 578999999999999865433
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=3.1e-20 Score=203.68 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=177.1
Q ss_pred ccccccccccCCC-CCccccc-------cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCC-
Q 041079 499 LRFLKFYRSSING-ENKCKQQ-------HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSL- 569 (945)
Q Consensus 499 Lr~L~l~~~~l~~-~~~~~~~-------~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l- 569 (945)
|+.|+++++.+.. ..+.... .+++|++|++++|+.....|....+.++++|++|+|++|......+.+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 8899999988843 4444333 689999999999876544443222388999999999999876662245555
Q ss_pred ----cccceEeecCCCCcccC-ccccCCccccEEeccccccccc--cCccc--CCCCCCCEEeccCCCCCC--ccC-Ccc
Q 041079 570 ----SNIEKIILSGTAIEELP-SSVGCLSGLVLLHLQACKMLKS--LPCSL--FKLKSLEDLNLCRCSNLR--RFP-EEI 637 (945)
Q Consensus 570 ----~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~~~--~lp-~~l 637 (945)
++|++|+|++|.+..++ ..++.+++|++|+|++|...+. +|..+ .++++|++|+|++|...+ .++ ..+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 89999999999999887 6899999999999999986654 34445 789999999999987652 333 234
Q ss_pred CCcccCccccccCCCCccCC--ccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCC
Q 041079 638 GNVEASNSLYAYGTASSEVP--SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGR 715 (945)
Q Consensus 638 ~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~ 715 (945)
.++++|++|++++|.+...+ ..+..+++|+.|++++|... .+|..+. ++|+.|+|++|+++.+|. +..
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~ 294 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDE 294 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-------SCCSSCC--SEEEEEECCSSCCCSCCC-TTT
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-------hhhhhcc--CCceEEECCCCCCCCChh-Hhh
Confidence 57789999999999988765 45667899999999999853 2344443 799999999999999987 999
Q ss_pred CCCCCEEECCCCCCcc
Q 041079 716 LSLLEELDLRRNNFER 731 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~~ 731 (945)
+++|++|+|++|+++.
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 9999999999998864
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.5e-19 Score=192.55 Aligned_cols=192 Identities=18% Similarity=0.271 Sum_probs=144.2
Q ss_pred ccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEe
Q 041079 544 PYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLN 623 (945)
Q Consensus 544 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 623 (945)
..+++|+.|++++|. +..+|.+..+++|++|+|++|.++.++. +..+++|++|+|++|. +..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 345666666776664 3345666667777777777777777776 7777888888888776 55555 477788888888
Q ss_pred ccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 624 LCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 624 Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
+++|...+ +|. +..+++|++|++++|.+..++. +..+++|+.|++++|.... ++. +..+++|+.|++++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------LTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCS
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------Chh-hcCCCCCCEEECCC
Confidence 88776543 443 7777888888888888777765 7788888888888886421 122 56788899999999
Q ss_pred CCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 704 CGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 704 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
|.+..++. +..+++|++|+|++|+++.++ .+..+++|+.|+|++|+.
T Consensus 183 n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 183 NKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 99888776 788899999999999999888 488899999999999874
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=4.1e-19 Score=190.57 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=113.2
Q ss_pred cccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 545 YLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
.+++|+.|++++|. ...++.+..+++|++|+|++|.++.++ .+..+++|++|+|++|...+..|..+.++++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 34445555555543 333444555566666666666655543 4556666666666666533323333455666666666
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
++|...+..|..++.+++|++|++++|.+..+|.. +..+++|+.|++++|... ...+..+..+++|+.|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------SLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC------ccCHHHhcCCccCCEEECCC
Confidence 66655444444455666666666666665555443 345555666666555421 11222345566666677766
Q ss_pred CCCCccCc-ccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCcccc
Q 041079 704 CGVTRLPE-SLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPELPCN 762 (945)
Q Consensus 704 ~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~~ 762 (945)
|.+..+|+ .+..+++|+.|+|++|.+. +.+++|+.|++..|...+.+|....+
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 66665544 3566677777777777554 23445666666666666666654433
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=5.4e-19 Score=185.81 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=123.7
Q ss_pred CCCCCCccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCccC-Cc
Q 041079 560 LKKLPEISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRFP-EE 636 (945)
Q Consensus 560 l~~lp~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp-~~ 636 (945)
+..+|. -..+|++|+|++|.++.+|. .+..+++|++|++++|..++.+|. .+.++++|++|++++|..+..+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444444 22356666666666665555 455666666666666643444443 45566666666666622233333 44
Q ss_pred cCCcccCccccccCCCCccCCccccCCCCCc---EEEcccCCCCccCccccccccccCCCCCCC-EEeccCCCCCccCcc
Q 041079 637 IGNVEASNSLYAYGTASSEVPSSIVRSNNFR---FLSFRESRGDKQMGLSLLISLSSDGLHSLK-SLCLHNCGVTRLPES 712 (945)
Q Consensus 637 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~L~~~~l~~lp~~ 712 (945)
+.++++|++|++++|.+..+|. +..+++|+ .|++++|..+. ...+..+.++++|+ .|++++|.+..+|..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~-----~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT-----SIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-----EECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh-----hcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 5666666666666666666665 55566665 77777762222 11233456677777 777777777777765
Q ss_pred cCCCCCCCEEECCCC-CCcccc-hhhhCC-CCCCEEeeccCCCCcccCC-cccccceEeeccCcc
Q 041079 713 LGRLSLLEELDLRRN-NFERVP-ESIIQL-SKLNYLYLSYCQRLQSLPE-LPCNLILLYADHCTV 773 (945)
Q Consensus 713 l~~l~~L~~L~Ls~n-~l~~lp-~~i~~l-~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~ 773 (945)
....++|+.|+|++| .++.+| ..+..+ ++|+.|+|++|+.. .+|. .+++|+.|++.++..
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC--
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccC
Confidence 544477888888888 377775 346667 77888888877643 4443 466777777777654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.8e-18 Score=187.26 Aligned_cols=174 Identities=19% Similarity=0.184 Sum_probs=107.2
Q ss_pred cccceEeecCCCCccc-CccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccc
Q 041079 570 SNIEKIILSGTAIEEL-PSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYA 648 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 648 (945)
++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|.. +.+++|++|++++|.. ..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEEC
Confidence 3455555555555544 2345555555555555554 3334432 4555555555555433 345555555555555666
Q ss_pred cCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCC
Q 041079 649 YGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRR 726 (945)
Q Consensus 649 ~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~ 726 (945)
++|.+..+|. .+..+++|+.|++++|... ...+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELK------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCC------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCC------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 5555555553 4556666666666666531 11223355677888888888888877764 46788888888888
Q ss_pred CCCcccchhhhCCCCCCEEeeccCCC
Q 041079 727 NNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 727 n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
|+++.+|..+..+++|+.|+|++|+.
T Consensus 182 N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccChhhcccccCCeEEeCCCCc
Confidence 88888888888888888888888764
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.6e-18 Score=180.06 Aligned_cols=177 Identities=28% Similarity=0.303 Sum_probs=102.9
Q ss_pred cccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcc-cCCCCCCCEEeccCCCCCCccCCccCCcccCcccc
Q 041079 570 SNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCS-LFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLY 647 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 647 (945)
++|++|+|++|.++.+|. .+..+++|++|+|++|. +..+|.. +.++++|++|++++|......+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 345555555555554443 35555555555555554 3333332 24455555555555544433333445555555555
Q ss_pred ccCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECC
Q 041079 648 AYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLR 725 (945)
Q Consensus 648 l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls 725 (945)
+++|.+..+|. .+..+++|+.|++++|... ...+..+..+++|+.|+|++|.+..+|. .+..+++|++|+|+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCC------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 55555555443 3455666666666665421 1112235567777777777777777664 46777788888888
Q ss_pred CCCCcccch-hhhCCCCCCEEeeccCCCC
Q 041079 726 RNNFERVPE-SIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 726 ~n~l~~lp~-~i~~l~~L~~L~L~~c~~l 753 (945)
+|+++.+|. .+..+++|+.|+|++|+..
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888877765 3667778888888877643
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=6.7e-18 Score=204.00 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=130.7
Q ss_pred cccCCCCCCCEEeccCCCCCCccC-CccCCcccCccccccCCCCccCC-ccccCCCCCcEEEcccCCCCccCcccccccc
Q 041079 611 CSLFKLKSLEDLNLCRCSNLRRFP-EEIGNVEASNSLYAYGTASSEVP-SSIVRSNNFRFLSFRESRGDKQMGLSLLISL 688 (945)
Q Consensus 611 ~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 688 (945)
..+..+++|+.+++++|......+ ..+..+.+++.++++.|.+...+ ..+..+++|+.|++++|... ....|.
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~-----~~~~~~ 488 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-----ENFLPD 488 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-----GGEECS
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc-----cccCch
Confidence 345578899999999877665544 45788999999999999976654 46778999999999998742 233566
Q ss_pred ccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCcccc-hhhhCCCCCCEEeeccCCCCcccCC----cccc
Q 041079 689 SSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLSYCQRLQSLPE----LPCN 762 (945)
Q Consensus 689 ~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~----l~~~ 762 (945)
.+..+++|+.|+|++|++..+ |..++.+++|++|+|++|+++.+| ..+..+++|+.|+|++|+..+..|. ++++
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 568 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTT
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCc
Confidence 788999999999999999986 668999999999999999999886 5688999999999999997766664 3578
Q ss_pred cceEeeccCcc
Q 041079 763 LILLYADHCTV 773 (945)
Q Consensus 763 L~~L~~~~c~~ 773 (945)
|+.|++++++-
T Consensus 569 L~~L~L~~Np~ 579 (635)
T 4g8a_A 569 LAFLNLTQNDF 579 (635)
T ss_dssp CCEEECTTCCB
T ss_pred CCEEEeeCCCC
Confidence 99999998765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=6.9e-18 Score=182.57 Aligned_cols=201 Identities=19% Similarity=0.190 Sum_probs=156.5
Q ss_pred cccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-CccCCcccceEeecCCCCcccCccccCCccc
Q 041079 517 QQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGL 595 (945)
Q Consensus 517 ~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L 595 (945)
+.++++++.++++++. ++.+|. .++ +.|+.|+|++|......+ .+..+++|++|+|++|.|+.+|.. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~--~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPP--DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCS--CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCC-CCcCCC--CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 4556667777776543 343332 222 567788888887554444 566788888999988888888765 788889
Q ss_pred cEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccC
Q 041079 596 VLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRES 674 (945)
Q Consensus 596 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~ 674 (945)
++|+|++|. +..+|..+..+++|++|++++|...+..|..+..+++|++|++++|.+..+|.. +..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999998887 668888888888999999988877665567788888999999999988888764 567899999999988
Q ss_pred CCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCc
Q 041079 675 RGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 675 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 730 (945)
... ...+..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.+.
T Consensus 159 ~l~------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLT------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCS------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCC------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 742 22233467789999999999999999999999999999999999876
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.3e-18 Score=186.55 Aligned_cols=215 Identities=20% Similarity=0.246 Sum_probs=172.9
Q ss_pred cccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 545 YLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
.+..+..+++.++.. ........+++|+.|+++++.++.++. +..+++|++|++++|. +..++ .+.++++|++|++
T Consensus 17 ~~~~l~~l~l~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 92 (272)
T 3rfs_A 17 AFAETIKANLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHHHTCSCT-TSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEEC
T ss_pred hHHHHHHHHhcCccc-ccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEEC
Confidence 344555567766542 333355679999999999999998874 8899999999999998 55565 6889999999999
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
++|...+..|..++++++|++|++++|.+..+|.. +..+++|+.|++++|... ...+..+..+++|+.|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------SLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC------ccCHHHhccCccCCEEECCC
Confidence 99987766666789999999999999999888775 688999999999999742 22334467899999999999
Q ss_pred CCCCccCcc-cCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCCcccCCcccccceEeeccCcc
Q 041079 704 CGVTRLPES-LGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADHCTV 773 (945)
Q Consensus 704 ~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~ 773 (945)
|.++.+|.. ++.+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.....| +|+.|++.++..
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~ 234 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKH 234 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHT
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhC
Confidence 999987654 6889999999999999998775 47889999999999998665443 456666655443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=190.64 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=149.7
Q ss_pred ccccceeeecCCCCCCCCC-Cc--cCCcccceEeecCCCCccc-C----ccccCCccccEEeccccccccccCcccCCCC
Q 041079 546 LKELVILNLRGCKGLKKLP-EI--SSLSNIEKIILSGTAIEEL-P----SSVGCLSGLVLLHLQACKMLKSLPCSLFKLK 617 (945)
Q Consensus 546 l~~L~~L~L~~~~~l~~lp-~~--~~l~~L~~L~Ls~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 617 (945)
+++|++|+|++|...+..| .+ ..+++|++|+|++|.++.. | ..+..+++|++|+|++|......|..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457888888887666666 34 6688888888888888742 2 2345688889999988886555667788889
Q ss_pred CCCEEeccCCCCCCc--c--CCccCCcccCccccccCCCCccCCcc----ccCCCCCcEEEcccCCCCccCccccccccc
Q 041079 618 SLEDLNLCRCSNLRR--F--PEEIGNVEASNSLYAYGTASSEVPSS----IVRSNNFRFLSFRESRGDKQMGLSLLISLS 689 (945)
Q Consensus 618 ~L~~L~Ls~~~~~~~--l--p~~l~~l~~L~~L~l~~~~~~~lp~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 689 (945)
+|++|+|++|...+. + +..++.+++|++|++++|.+..++.. +..+++|++|++++|..... .|..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------VNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC------CCSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc------chhh
Confidence 999999998876542 3 23346788899999999888766652 46778889999988874322 2333
Q ss_pred cCCC---CCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCC
Q 041079 690 SDGL---HSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 690 l~~l---~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+..+ ++|+.|+|++|.++.+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 3333 689999999999998888775 799999999999998875 678899999999998754
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.5e-18 Score=185.21 Aligned_cols=193 Identities=22% Similarity=0.274 Sum_probs=165.1
Q ss_pred CCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccC
Q 041079 564 PEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEAS 643 (945)
Q Consensus 564 p~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 643 (945)
.....+++|++|+++++.++.+| .+..+++|++|+|++|. +..++. +.++++|++|++++|... .+| .+..+++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 109 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSI 109 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTC
T ss_pred ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCC
Confidence 34556899999999999999998 68999999999999997 667776 899999999999998754 454 68999999
Q ss_pred ccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEE
Q 041079 644 NSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELD 723 (945)
Q Consensus 644 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 723 (945)
++|++++|.+..++. +..+++|+.|++++|..... +. +..+++|+.|++++|.+..++. +..+++|+.|+
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-------SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC-------GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC-------cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEE
Confidence 999999999999875 89999999999999974321 11 6678999999999999999887 89999999999
Q ss_pred CCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc--ccccceEeeccCcc
Q 041079 724 LRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL--PCNLILLYADHCTV 773 (945)
Q Consensus 724 Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~ 773 (945)
|++|.++.+|. +..+++|+.|+|++|+.. .++.+ .++|+.|++++|+-
T Consensus 180 l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 180 ADDNKISDISP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEEE
T ss_pred CCCCccCcChh-hcCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCee
Confidence 99999999885 899999999999999754 34433 46788888887753
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=6.5e-18 Score=181.65 Aligned_cols=202 Identities=18% Similarity=0.137 Sum_probs=167.9
Q ss_pred cccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccc
Q 041079 570 SNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYA 648 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 648 (945)
++|++|+|++|.++.++. .+..+++|++|++++|......+..+.++++|++|++++|...+..|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 589999999999998876 7999999999999999854444457889999999999999887777788999999999999
Q ss_pred cCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC-cccCCCCCCC----EE
Q 041079 649 YGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP-ESLGRLSLLE----EL 722 (945)
Q Consensus 649 ~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~----~L 722 (945)
++|.+..++. .+..+++|+.|++++|.... ..+|..+..+++|+.|++++|.+..++ ..+..+++|+ .|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccce-----ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 9999888876 68999999999999997422 124666788999999999999999865 4565556666 89
Q ss_pred ECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCC-c---ccccceEeeccCcccccc
Q 041079 723 DLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPE-L---PCNLILLYADHCTVLKSI 777 (945)
Q Consensus 723 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~~L~~l 777 (945)
++++|.++.+|.......+|+.|+|++|+.. .+|. . .++|+.|++++++--...
T Consensus 183 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 9999999999887777779999999999854 4543 2 478999999976554333
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.4e-17 Score=176.56 Aligned_cols=194 Identities=24% Similarity=0.267 Sum_probs=161.2
Q ss_pred cccceEeecCCCCcccCccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccc
Q 041079 570 SNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYA 648 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 648 (945)
.++++++++++.++.+|..+. ++|+.|+|++|. +..+| ..+.++++|++|++++|......+..+.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357889999999999998775 789999999998 45555 57889999999999998765444445688999999999
Q ss_pred cCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCC
Q 041079 649 YGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRR 726 (945)
Q Consensus 649 ~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~ 726 (945)
++|.+..+|. .+..+++|+.|++++|... ...+..+..+++|+.|+|++|.+..+|.. +..+++|++|+|++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccC------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 9999998886 4688999999999998742 22344577899999999999999998765 78999999999999
Q ss_pred CCCcccch-hhhCCCCCCEEeeccCCCCcccCC-c---ccccceEeeccCcc
Q 041079 727 NNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPE-L---PCNLILLYADHCTV 773 (945)
Q Consensus 727 n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~~ 773 (945)
|.++.+|. .+..+++|+.|+|++|+.. .+|. . .++|+.|++++++-
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 99998885 4788999999999999754 4543 2 46889999988764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=7.8e-18 Score=176.89 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=128.2
Q ss_pred ccceeeecCCCCCCCCC-CccCCcccceEeecCCC-CcccCc-cccCCccccEEeccccccccccC-cccCCCCCCCEEe
Q 041079 548 ELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTA-IEELPS-SVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLN 623 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~ 623 (945)
+|++|+|++|......+ .+.++++|++|++++|. ++.+|. .+..+++|++|++++|..+..+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666665433333 35556777777777775 666654 46667777777777632344544 3455667777777
Q ss_pred ccCCCCCCccCCccCCcccCc---cccccCC-CCccCCc-cccCCCCCc-EEEcccCCCCccCccccccccccCCCCCCC
Q 041079 624 LCRCSNLRRFPEEIGNVEASN---SLYAYGT-ASSEVPS-SIVRSNNFR-FLSFRESRGDKQMGLSLLISLSSDGLHSLK 697 (945)
Q Consensus 624 Ls~~~~~~~lp~~l~~l~~L~---~L~l~~~-~~~~lp~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 697 (945)
+++|...+ +|. ++.+.+|+ +|++++| .+..+|. .+..+++|+ .|++++|... ..+ +..+.. ++|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~-----~~~~~~-~~L~ 182 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ-----GYAFNG-TKLD 182 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC-----TTTTTT-CEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC-----HhhcCC-CCCC
Confidence 77665443 555 66666666 7777777 6666665 366677777 7777776532 111 112233 6888
Q ss_pred EEeccCCC-CCccC-cccCCC-CCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 698 SLCLHNCG-VTRLP-ESLGRL-SLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 698 ~L~L~~~~-l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
.|++++|. +..+| ..+..+ ++|+.|+|++|+++.+|.. .+++|+.|++++|..
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 99999994 88875 457888 8999999999999998865 788999999988753
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.1e-20 Score=219.27 Aligned_cols=39 Identities=3% Similarity=0.146 Sum_probs=17.8
Q ss_pred hccCcCccccccccccCCC----CCccccccCcceeEEEecCC
Q 041079 493 FTKMPKLRFLKFYRSSING----ENKCKQQHHGKLKQIIISAG 531 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~----~~~~~~~~l~~L~~L~Ls~~ 531 (945)
|..+++|+.|+++++.+.. .++..+..+++|++|++++|
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 66 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC
Confidence 4445555555555554432 11223344455555555544
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.8e-17 Score=171.02 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=119.4
Q ss_pred ccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccC
Q 041079 571 NIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYG 650 (945)
Q Consensus 571 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 650 (945)
+.+.++++++.++.+|..+. ++|+.|+|++|...+..|..+.++++|++|+|++|...+..|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45556666666666666554 4666666666664444444566666777777776666555555566666777777777
Q ss_pred CCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCC
Q 041079 651 TASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNN 728 (945)
Q Consensus 651 ~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~ 728 (945)
|.+..+|. .+..+++|+.|++++|... ...+..+..+++|+.|+|++|.+..+|. .++.+++|++|+|++|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLK------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCC------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 66666654 3466677777777776532 1122335667888888888888887766 57888888888888888
Q ss_pred Ccccch-hhhCCCCCCEEeeccCCCCcc
Q 041079 729 FERVPE-SIIQLSKLNYLYLSYCQRLQS 755 (945)
Q Consensus 729 l~~lp~-~i~~l~~L~~L~L~~c~~l~~ 755 (945)
++.+|. .+..+++|+.|+|++|+....
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 887765 677788888888888875443
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=4.8e-19 Score=196.33 Aligned_cols=220 Identities=18% Similarity=0.121 Sum_probs=152.2
Q ss_pred cccceeeecCCCCCCCCCCccCCcccceEeecCCCCcc--cCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 547 KELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEE--LPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 547 ~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
.+|+.|++++|......+.+..+++|++|+|++|.+.. +|..+..+++|++|+|++|......|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56677777777666666666677888888888887763 6777778888888888888755567777778888888888
Q ss_pred cCCCCCC--ccCCccCCcccCccccccCC-CCcc--CCccccCCC-CCcEEEcccCC-CCccCccccccccccCCCCCCC
Q 041079 625 CRCSNLR--RFPEEIGNVEASNSLYAYGT-ASSE--VPSSIVRSN-NFRFLSFRESR-GDKQMGLSLLISLSSDGLHSLK 697 (945)
Q Consensus 625 s~~~~~~--~lp~~l~~l~~L~~L~l~~~-~~~~--lp~~l~~l~-~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~~L~ 697 (945)
++|...+ .+|..+.++++|++|++++| .+.. ++..+..++ +|+.|++++|. .+.. ..++..+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCC
Confidence 8885444 36666777788888888888 6654 566677788 88888888874 1111 22344455678888
Q ss_pred EEeccCCC-CC-ccCcccCCCCCCCEEECCCCC-Cc-ccchhhhCCCCCCEEeeccCCCCcccCCcccccceEeecc
Q 041079 698 SLCLHNCG-VT-RLPESLGRLSLLEELDLRRNN-FE-RVPESIIQLSKLNYLYLSYCQRLQSLPELPCNLILLYADH 770 (945)
Q Consensus 698 ~L~L~~~~-l~-~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~ 770 (945)
.|++++|. ++ ..+..+..+++|++|+|++|. +. .....+.++++|+.|+|++|-....+..+..+++.|++++
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 302 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESC
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEec
Confidence 88888888 55 466678888889999998884 32 1112577788889999888811112222334466666643
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.4e-19 Score=202.86 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=140.7
Q ss_pred CccccccceeeecCCCCC---CCCC-C-------ccCCcccceEeecCCCCcc-----cCccccCCccccEEeccccccc
Q 041079 543 IPYLKELVILNLRGCKGL---KKLP-E-------ISSLSNIEKIILSGTAIEE-----LPSSVGCLSGLVLLHLQACKML 606 (945)
Q Consensus 543 ~~~l~~L~~L~L~~~~~l---~~lp-~-------~~~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l 606 (945)
+.++++|++|+|++|... ..+| . +..+++|++|+|++|.+.. +|..+..+++|++|+|++|...
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 344555666666655321 1222 1 2457778888888887775 6667777888888888887743
Q ss_pred cc----cCcccCCC---------CCCCEEeccCCCCC-CccC---CccCCcccCccccccCCCCc------cCCccccCC
Q 041079 607 KS----LPCSLFKL---------KSLEDLNLCRCSNL-RRFP---EEIGNVEASNSLYAYGTASS------EVPSSIVRS 663 (945)
Q Consensus 607 ~~----lp~~i~~l---------~~L~~L~Ls~~~~~-~~lp---~~l~~l~~L~~L~l~~~~~~------~lp~~l~~l 663 (945)
.. ++..+..+ ++|++|+|++|... ..+| ..+..+++|++|++++|.+. -+|..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 22 33333333 78888888887765 3444 35566777888888888766 233367778
Q ss_pred CCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc-----cCccc--CCCCCCCEEECCCCCCcc-----
Q 041079 664 NNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR-----LPESL--GRLSLLEELDLRRNNFER----- 731 (945)
Q Consensus 664 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----lp~~l--~~l~~L~~L~Ls~n~l~~----- 731 (945)
++|+.|++++|..... ....+|..+..+++|+.|+|++|.++. +|..+ +.+++|+.|+|++|.++.
T Consensus 216 ~~L~~L~Ls~n~l~~~--g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHL--GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp TTCCEEECCSSCCHHH--HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred CCccEEECcCCCCCcH--HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 8888888888763110 012344556677888888888888874 46666 448888888888888886
Q ss_pred cchhh-hCCCCCCEEeeccCCCCccc
Q 041079 732 VPESI-IQLSKLNYLYLSYCQRLQSL 756 (945)
Q Consensus 732 lp~~i-~~l~~L~~L~L~~c~~l~~l 756 (945)
+|..+ .++++|+.|+|++|+.....
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777 56888888888888765433
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=185.58 Aligned_cols=221 Identities=16% Similarity=0.099 Sum_probs=168.8
Q ss_pred ccceeeecCCCCCCC----CCCccCCcccceEeecCCCCc-ccCccc--cCCccccEEeccccccccccC----cccCCC
Q 041079 548 ELVILNLRGCKGLKK----LPEISSLSNIEKIILSGTAIE-ELPSSV--GCLSGLVLLHLQACKMLKSLP----CSLFKL 616 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~----lp~~~~l~~L~~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~i~~l 616 (945)
.++.|.+.++..... +.....+++|++|+|++|.+. ..|..+ ..+++|++|+|++|...+..| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355566666543211 112334677999999999998 556666 899999999999998665544 345679
Q ss_pred CCCCEEeccCCCCCCccCCccCCcccCccccccCCCCcc---CC--ccccCCCCCcEEEcccCCCCccCccccccccccC
Q 041079 617 KSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSE---VP--SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSD 691 (945)
Q Consensus 617 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~---lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 691 (945)
++|++|+|++|...+..|..++.+++|++|++++|.+.. ++ ..+..+++|++|++++|... ..+ ......+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~--~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPT--GVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHH--HHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chH--HHHHHHHh
Confidence 999999999999887778899999999999999998543 32 33478999999999999742 111 11111235
Q ss_pred CCCCCCEEeccCCCCCcc-CcccCCC---CCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCc-ccCCcccccceE
Q 041079 692 GLHSLKSLCLHNCGVTRL-PESLGRL---SLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQ-SLPELPCNLILL 766 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~~l-p~~l~~l---~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~l~~~L~~L 766 (945)
.+++|+.|+|++|.+..+ |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|++|+..+ ..+..+++|+.|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNL 299 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCE
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEE
Confidence 678999999999999976 7777766 699999999999999998774 799999999998654 234456889999
Q ss_pred eeccCcc
Q 041079 767 YADHCTV 773 (945)
Q Consensus 767 ~~~~c~~ 773 (945)
++++++-
T Consensus 300 ~L~~N~l 306 (310)
T 4glp_A 300 TLDGNPF 306 (310)
T ss_dssp ECSSTTT
T ss_pred ECcCCCC
Confidence 9887653
No 91
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.72 E-value=2.6e-19 Score=173.06 Aligned_cols=79 Identities=16% Similarity=0.375 Sum_probs=75.1
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCCccccccCchhhHHHHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPSDLRNQSGTFGDSYLKL 79 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~ 79 (945)
+++|+.|.++|.+||++|+++|+|+|++|++|.||++||.++++|.+++++.|+||||+|+|++||+|.|.|+++|+..
T Consensus 57 l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 57 LRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp ECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred CCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 4789999999999999999999999999999999999999999999888899999999999999999999999987654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.6e-17 Score=189.75 Aligned_cols=182 Identities=20% Similarity=0.210 Sum_probs=116.2
Q ss_pred ccceeeecCCCCCCCCCC-ccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccC
Q 041079 548 ELVILNLRGCKGLKKLPE-ISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCR 626 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 626 (945)
+|+.|+|++|... .+|. + +++|++|+|++|.|+.+| ..+++|++|+|++|. +..+|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 4555555555432 2442 2 256666666666666666 345666666666665 344665 443 666666666
Q ss_pred CCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCC
Q 041079 627 CSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGV 706 (945)
Q Consensus 627 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l 706 (945)
|...+ +|. .+++|+.|++++|.+..+|. .+++|+.|++++|.... +|. +. ++|+.|+|++|.+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-------lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-------LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-------CCC-CC--TTCCEEECCSSCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-------cch-hh--CCCCEEECcCCCC
Confidence 65443 555 45666777777776666665 45677777777776321 222 22 6788888888888
Q ss_pred CccCcccCCCCCC-------CEEECCCCCCcccchhhhCCCCCCEEeeccCCCCcccCCc
Q 041079 707 TRLPESLGRLSLL-------EELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQSLPEL 759 (945)
Q Consensus 707 ~~lp~~l~~l~~L-------~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~l 759 (945)
+.+|. +.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|+..+.+|..
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 87777 544 66 8888888888888888888888888888888876666543
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=2.1e-19 Score=208.57 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=172.4
Q ss_pred chhhccCcCccccccccccCCCCCccc-----cccCcceeEEEecCCcCCccC--CCCCCCccccccceeeecCCCCCCC
Q 041079 490 SDTFTKMPKLRFLKFYRSSINGENKCK-----QQHHGKLKQIIISAGNFFTKT--PKPSFIPYLKELVILNLRGCKGLKK 562 (945)
Q Consensus 490 ~~~f~~~~~Lr~L~l~~~~l~~~~~~~-----~~~l~~L~~L~Ls~~~~l~~~--~~~~~~~~l~~L~~L~L~~~~~l~~ 562 (945)
+..|..+++|+.|++++|.+.+..... ....++|+.|++++|...... .....+..+++|+.|+|++|.....
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 556777788888888877765422111 223456888888777432211 0012334456778888887763322
Q ss_pred CC-Ccc-----CCcccceEeecCCCCcc-----cCccccCCccccEEeccccccccc----c-CcccCCCCCCCEEeccC
Q 041079 563 LP-EIS-----SLSNIEKIILSGTAIEE-----LPSSVGCLSGLVLLHLQACKMLKS----L-PCSLFKLKSLEDLNLCR 626 (945)
Q Consensus 563 lp-~~~-----~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~----l-p~~i~~l~~L~~L~Ls~ 626 (945)
.+ .+. .+++|++|+|++|.++. ++..+..+++|++|++++|..... + +.....+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 11 121 24578888888887774 566677778888888888763221 1 22223577888888888
Q ss_pred CCCCCc----cCCccCCcccCccccccCCCCccC-----Ccccc-CCCCCcEEEcccCCCCccCccccccccccCCCCCC
Q 041079 627 CSNLRR----FPEEIGNVEASNSLYAYGTASSEV-----PSSIV-RSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSL 696 (945)
Q Consensus 627 ~~~~~~----lp~~l~~l~~L~~L~l~~~~~~~l-----p~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 696 (945)
|..... +|..+.++++|++|++++|.+... +..+. ..++|+.|++++|...... ...++..+..+++|
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC--CSHFSSVLAQNRFL 343 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--HHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH--HHHHHHHHhhCCCc
Confidence 755432 566666777888888888776432 22222 2357888888877632210 01234445566788
Q ss_pred CEEeccCCCCCcc-C----cccCC-CCCCCEEECCCCCCc-----ccchhhhCCCCCCEEeeccCCCCc--------ccC
Q 041079 697 KSLCLHNCGVTRL-P----ESLGR-LSLLEELDLRRNNFE-----RVPESIIQLSKLNYLYLSYCQRLQ--------SLP 757 (945)
Q Consensus 697 ~~L~L~~~~l~~l-p----~~l~~-l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l~--------~lp 757 (945)
+.|++++|.++.. + ..+.. .++|++|+|++|.++ .+|..+..+++|+.|+|++|+... .+|
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 8888888877642 2 22322 568888888888887 677777788888888888886543 244
Q ss_pred CcccccceEeeccCc
Q 041079 758 ELPCNLILLYADHCT 772 (945)
Q Consensus 758 ~l~~~L~~L~~~~c~ 772 (945)
...++|+.|.+.++.
T Consensus 424 ~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 424 QPGCLLEQLVLYDIY 438 (461)
T ss_dssp STTCCCCEEECTTCC
T ss_pred cCCcchhheeecccc
Confidence 445567777766543
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.3e-18 Score=192.81 Aligned_cols=231 Identities=18% Similarity=0.152 Sum_probs=161.5
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCC-CC-CccCCcccceEeecCCCCc-ccCccccCCccccE
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKK-LP-EISSLSNIEKIILSGTAIE-ELPSSVGCLSGLVL 597 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp-~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~ 597 (945)
++++.|++++|...... ..+.++++|++|+|++|..... +| .+..+++|++|+|++|.++ ..|..++.+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCC---CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccc---hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 55666666655432221 1244677788888888764433 44 3556888888888888887 56777888889999
Q ss_pred Eecccccccc--ccCcccCCCCCCCEEeccCC-CCCCc-cCCccCCcc-cCccccccCCCC----ccCCccccCCCCCcE
Q 041079 598 LHLQACKMLK--SLPCSLFKLKSLEDLNLCRC-SNLRR-FPEEIGNVE-ASNSLYAYGTAS----SEVPSSIVRSNNFRF 668 (945)
Q Consensus 598 L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~-~~~~~-lp~~l~~l~-~L~~L~l~~~~~----~~lp~~l~~l~~L~~ 668 (945)
|++++|..++ .+|..+.++++|++|++++| ..... ++..+..++ +|++|++++|.. ..+|..+..+++|+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 9999885455 36666778889999999988 44332 667777888 899999988843 556777788999999
Q ss_pred EEcccCCCCccCccccccccccCCCCCCCEEeccCCC-CC-ccCcccCCCCCCCEEECCCCCCcccchhhhCC-CCCCEE
Q 041079 669 LSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG-VT-RLPESLGRLSLLEELDLRRNNFERVPESIIQL-SKLNYL 745 (945)
Q Consensus 669 L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l-~~L~~L 745 (945)
|++++|..+.. ..+..+..+++|+.|++++|. +. .....+..+++|+.|+|++| +.. ..+..+ .+|..|
T Consensus 227 L~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L 298 (336)
T 2ast_B 227 LDLSDSVMLKN-----DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHL 298 (336)
T ss_dssp EECTTCTTCCG-----GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTS
T ss_pred EeCCCCCcCCH-----HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcce
Confidence 99999874322 223346678999999999995 32 12235788999999999999 331 123333 236666
Q ss_pred eeccCCCCcccCCcccc
Q 041079 746 YLSYCQRLQSLPELPCN 762 (945)
Q Consensus 746 ~L~~c~~l~~lp~l~~~ 762 (945)
++++|+..+..|....+
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 78888877777765543
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=8.2e-19 Score=198.51 Aligned_cols=230 Identities=17% Similarity=0.106 Sum_probs=175.4
Q ss_pred CccccccceeeecCCCCCCC----CC-CccCCcccceEeecCCCCc----ccCccc-------cCCccccEEeccccccc
Q 041079 543 IPYLKELVILNLRGCKGLKK----LP-EISSLSNIEKIILSGTAIE----ELPSSV-------GCLSGLVLLHLQACKML 606 (945)
Q Consensus 543 ~~~l~~L~~L~L~~~~~l~~----lp-~~~~l~~L~~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~l 606 (945)
+..+++|++|+|++|..... ++ .+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44556677777777764433 22 3557899999999998665 334444 78899999999999865
Q ss_pred c----ccCcccCCCCCCCEEeccCCCCCCc----cCCccCCc---------ccCccccccCCCCc--cCC---ccccCCC
Q 041079 607 K----SLPCSLFKLKSLEDLNLCRCSNLRR----FPEEIGNV---------EASNSLYAYGTASS--EVP---SSIVRSN 664 (945)
Q Consensus 607 ~----~lp~~i~~l~~L~~L~Ls~~~~~~~----lp~~l~~l---------~~L~~L~l~~~~~~--~lp---~~l~~l~ 664 (945)
. .+|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|.+. .+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 3787888999999999999987533 33334444 89999999999975 445 4677899
Q ss_pred CCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC-----ccCcccCCCCCCCEEECCCCCCcc-----cch
Q 041079 665 NFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT-----RLPESLGRLSLLEELDLRRNNFER-----VPE 734 (945)
Q Consensus 665 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~ 734 (945)
+|+.|++++|... ........+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++. +|.
T Consensus 188 ~L~~L~L~~n~l~-~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 188 LLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TCCEEECCSSCCC-HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCC-HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 9999999999742 11111233446778999999999999994 588889999999999999999984 467
Q ss_pred hhhC--CCCCCEEeeccCCCCc----ccCCc----ccccceEeeccCcc
Q 041079 735 SIIQ--LSKLNYLYLSYCQRLQ----SLPEL----PCNLILLYADHCTV 773 (945)
Q Consensus 735 ~i~~--l~~L~~L~L~~c~~l~----~lp~l----~~~L~~L~~~~c~~ 773 (945)
.+.. +++|+.|+|++|.... .+|.. .++|+.|++++|+.
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 7744 9999999999998766 47653 48899999988764
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.2e-16 Score=172.99 Aligned_cols=171 Identities=21% Similarity=0.267 Sum_probs=115.5
Q ss_pred cCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccc
Q 041079 567 SSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSL 646 (945)
Q Consensus 567 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 646 (945)
..+++|++|++++|.++.+|. +..+++|++|+|++|. +..++. +.++++|++|++++|.... +| .++.+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 345555555555555555543 5555566666666554 333443 5556666666666554332 33 25566666666
Q ss_pred cccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCC
Q 041079 647 YAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRR 726 (945)
Q Consensus 647 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~ 726 (945)
++++|.+..+ ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+..++. +..+++|+.|+|++
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence 6666666555 3466777777787777764221 235678899999999999998876 88999999999999
Q ss_pred CCCcccchhhhCCCCCCEEeeccCCCC
Q 041079 727 NNFERVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 727 n~l~~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
|.++.+|. +..+++|+.|++++|+..
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CcCCCChh-hccCCCCCEEECcCCccc
Confidence 99999874 889999999999998743
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.2e-16 Score=174.58 Aligned_cols=204 Identities=21% Similarity=0.237 Sum_probs=99.3
Q ss_pred cccceEeecCCCCcccCc-cccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCcc-CCccCCcccCccc
Q 041079 570 SNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRF-PEEIGNVEASNSL 646 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~L 646 (945)
+++++|+|++|.|+.+|+ .+..|++|++|+|++|..++.+|. .+.++++|+++...+++.+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345555555555555554 245555555555555554444443 2344555544333222222222 3445555555555
Q ss_pred cccCCCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCC-CCCCEEeccCCCCCccCcccCCCCCCCEEEC
Q 041079 647 YAYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGL-HSLKSLCLHNCGVTRLPESLGRLSLLEELDL 724 (945)
Q Consensus 647 ~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 724 (945)
++++|.+..+|. ......++..|++.++..+..++ +..+..+ ..|+.|+|++|.++.+|......++|++|++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-----~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-----RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-----TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred cccccccccCCchhhcccchhhhhhhcccccccccc-----ccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 555555555443 22233445555554443322211 1112222 2355566666666655555545555666665
Q ss_pred CC-CCCcccch-hhhCCCCCCEEeeccCCCCcccCC-cccccceEeeccCcccccccC
Q 041079 725 RR-NNFERVPE-SIIQLSKLNYLYLSYCQRLQSLPE-LPCNLILLYADHCTVLKSISG 779 (945)
Q Consensus 725 s~-n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~L~~l~~ 779 (945)
++ |.++.+|. .+..+++|+.|+|++|+ ++.+|. .+.+|+.|.+.+|..++.+|.
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCC
Confidence 43 45555553 34555666666666554 334442 345555555555555555554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=7.9e-17 Score=191.26 Aligned_cols=170 Identities=21% Similarity=0.264 Sum_probs=95.7
Q ss_pred CCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccc
Q 041079 568 SLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLY 647 (945)
Q Consensus 568 ~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 647 (945)
.+++|+.|++++|.|..+| .+..|++|+.|+|++|. +..+|. +..+++|++|+|++|... .+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence 3445555555555555444 24455555555555544 333333 445555555555554332 222 345555555555
Q ss_pred ccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCC
Q 041079 648 AYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRN 727 (945)
Q Consensus 648 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n 727 (945)
+++|.+..++ .+..+++|+.|+|++|..... ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 5555555442 355566666666666653211 234566677777777777776655 677777777777777
Q ss_pred CCcccchhhhCCCCCCEEeeccCCCC
Q 041079 728 NFERVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 728 ~l~~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+++.+| .+..|++|+.|+|++|+..
T Consensus 186 ~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCCCCh-HHccCCCCCEEEccCCcCc
Confidence 777665 4677777777777777643
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=9.2e-16 Score=162.31 Aligned_cols=175 Identities=21% Similarity=0.268 Sum_probs=124.5
Q ss_pred ccceeeecCCCCCCCCCC-ccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEecc
Q 041079 548 ELVILNLRGCKGLKKLPE-ISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLC 625 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 625 (945)
..+.++++++. +..+|. +. ++|++|+|++|.+..++. .+..+++|++|+|++|......|..+.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34455665544 334442 22 567777777777776544 47777777777777776544445556777788888887
Q ss_pred CCCCCCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCC
Q 041079 626 RCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 626 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 704 (945)
+|...+..|..+..+++|++|++++|.+..+|.. +..+++|+.|++++|... ...+..+..+++|+.|+|++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ------SIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC------ccCHHHcCcCcCCCEEECCCC
Confidence 7776655556677777888888888887777764 467888888888887632 222335678899999999999
Q ss_pred CCCccCc-ccCCCCCCCEEECCCCCCcc
Q 041079 705 GVTRLPE-SLGRLSLLEELDLRRNNFER 731 (945)
Q Consensus 705 ~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 731 (945)
.+..+|. .+..+++|+.|+|++|.+..
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9998765 78889999999999998874
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.5e-16 Score=172.12 Aligned_cols=174 Identities=22% Similarity=0.309 Sum_probs=132.8
Q ss_pred ccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEe
Q 041079 544 PYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLN 623 (945)
Q Consensus 544 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 623 (945)
..+++|+.|++++|. +..++.+..+++|++|+|++|.++.++. +..+++|++|++++|. +..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 455666677777664 3445666677788888888888877776 7778888888888876 555554 77788888888
Q ss_pred ccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 624 LCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 624 Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
+++|...+ + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|..... +. +..+++|+.|++++
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-------~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEECCS
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc-------hh-hcCCCccCEEECCC
Confidence 88876543 3 4577778888888888887777 5688889999999998874221 11 67889999999999
Q ss_pred CCCCccCcccCCCCCCCEEECCCCCCcccc
Q 041079 704 CGVTRLPESLGRLSLLEELDLRRNNFERVP 733 (945)
Q Consensus 704 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 733 (945)
|.++.+|. +..+++|+.|+|++|+++..|
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 99999875 899999999999999888765
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=6.7e-16 Score=171.93 Aligned_cols=214 Identities=15% Similarity=0.161 Sum_probs=104.8
Q ss_pred cceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--CccCCcccce-EeecCCCCcccC-ccccCCcccc
Q 041079 521 GKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EISSLSNIEK-IILSGTAIEELP-SSVGCLSGLV 596 (945)
Q Consensus 521 ~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~-L~Ls~~~i~~lp-~~i~~L~~L~ 596 (945)
++++.|+|++|+ ++.++ ...+.++++|++|+|++|...+.+| .+.++++|.. +.+++|.++.+| ..+..+++|+
T Consensus 30 ~~l~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCC-CSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCc-CCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 345555555543 22222 1234555556666666655544444 2344555443 444455565553 3455566666
Q ss_pred EEeccccccccccC-cccCCCCCCCEEeccCCCCCCccCCc-cCCc-ccCccccccCCCCccCCccccCCCCCcEEEccc
Q 041079 597 LLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEE-IGNV-EASNSLYAYGTASSEVPSSIVRSNNFRFLSFRE 673 (945)
Q Consensus 597 ~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~-l~~l-~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 673 (945)
+|++++|. +..+| ..+....++..|++.++..+..+|.. +..+ ..++.|++++|.+..+|..+....+|+.|.+.+
T Consensus 108 ~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred cccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 66666655 23333 23334445555666555555444432 2332 235555555555555555444444444444443
Q ss_pred CCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCC
Q 041079 674 SRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 674 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 752 (945)
+ |.+..+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..
T Consensus 187 ~-----------------------------n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 187 N-----------------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYN 235 (350)
T ss_dssp C-----------------------------TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTT
T ss_pred C-----------------------------CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCC
Confidence 3 33444543 345555555555555555555532 244555555555555
Q ss_pred CcccCCc--ccccceEee
Q 041079 753 LQSLPEL--PCNLILLYA 768 (945)
Q Consensus 753 l~~lp~l--~~~L~~L~~ 768 (945)
++.+|.+ +++|+.+++
T Consensus 236 l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 236 LKKLPTLEKLVALMEASL 253 (350)
T ss_dssp CCCCCCTTTCCSCCEEEC
T ss_pred cCcCCCchhCcChhhCcC
Confidence 5555543 244454444
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=7.4e-16 Score=180.83 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=102.6
Q ss_pred cccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccC
Q 041079 547 KELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCR 626 (945)
Q Consensus 547 ~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 626 (945)
++|++|+|++|... .+| ..+++|++|+|++|.|+.+|. +.. +|++|+|++|. +..+|. .+++|++|+|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCC
Confidence 34555555555432 444 335556666666666555555 433 56666666655 333554 455666666665
Q ss_pred CCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccc-cCCCCCCCEEeccCCC
Q 041079 627 CSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLS-SDGLHSLKSLCLHNCG 705 (945)
Q Consensus 627 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 705 (945)
|...+ +|. .+++|++|++++|.+..+|. +. ++|+.|++++|... .++. ++.. ....+.|+.|+|++|.
T Consensus 150 N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~---~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 150 NQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA---VPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC---CC--------CCEEEECCSSC
T ss_pred CccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh---HHHhhhcccccceEEecCCCc
Confidence 54432 444 34556666666666655655 43 56666666666532 2111 1100 0112345999999999
Q ss_pred CCccCcccCCCCCCCEEECCCCCCc-ccchhhhCCC
Q 041079 706 VTRLPESLGRLSLLEELDLRRNNFE-RVPESIIQLS 740 (945)
Q Consensus 706 l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~ 740 (945)
++.+|..+..+++|+.|+|++|.++ .+|..+..++
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9999999999999999999999998 6777766643
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=5.8e-18 Score=189.66 Aligned_cols=40 Identities=5% Similarity=-0.011 Sum_probs=21.6
Q ss_pred hccCcCccccccccccCCCCCc----cccccCc-ceeEEEecCCc
Q 041079 493 FTKMPKLRFLKFYRSSINGENK----CKQQHHG-KLKQIIISAGN 532 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~----~~~~~l~-~L~~L~Ls~~~ 532 (945)
+...++|+.|++++|.+.+..+ ..+..++ +|+.|+|++|.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 3334446666666666555443 3444555 56666665553
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=3.9e-16 Score=185.26 Aligned_cols=175 Identities=23% Similarity=0.322 Sum_probs=133.5
Q ss_pred CccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEE
Q 041079 543 IPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDL 622 (945)
Q Consensus 543 ~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 622 (945)
...|++|+.|+|++|. +..+|.+..+++|+.|+|++|.|..+|+ +..+++|+.|+|++|. +..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 3456667777777765 4456667778888888888888887776 7788888888888876 55565 57788888888
Q ss_pred eccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEecc
Q 041079 623 NLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLH 702 (945)
Q Consensus 623 ~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 702 (945)
+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|..... .| +..+++|+.|+|+
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~------~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI------VP--LAGLTKLQNLYLS 183 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC------GG--GTTCTTCCEEECC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc------hh--hccCCCCCEEECc
Confidence 888876554 3 3477788888888888887777 5688888999999988874221 12 6778899999999
Q ss_pred CCCCCccCcccCCCCCCCEEECCCCCCcccc
Q 041079 703 NCGVTRLPESLGRLSLLEELDLRRNNFERVP 733 (945)
Q Consensus 703 ~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 733 (945)
+|.+..+| .+..+++|+.|+|++|++...|
T Consensus 184 ~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 184 KNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 99998875 5888999999999999887665
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.4e-17 Score=186.64 Aligned_cols=250 Identities=13% Similarity=0.040 Sum_probs=155.5
Q ss_pred cccccccCCCCCccccccCcceeEEEecCCcCCccCCCC---CCCcccc-ccceeeecCCCCCCCCC-CccCC-----cc
Q 041079 502 LKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKP---SFIPYLK-ELVILNLRGCKGLKKLP-EISSL-----SN 571 (945)
Q Consensus 502 L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~---~~~~~l~-~L~~L~L~~~~~l~~lp-~~~~l-----~~ 571 (945)
+.++.+.+.+.++......++|+.|+|++|.. ...+.. ..+.+++ +|++|+|++|......+ .+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCC-ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666777776666666667799999998863 332210 2345566 78888998887554433 34443 88
Q ss_pred cceEeecCCCCcccCcc-----ccCC-ccccEEeccccccccccCcc----cCC-CCCCCEEeccCCCCCC----ccCCc
Q 041079 572 IEKIILSGTAIEELPSS-----VGCL-SGLVLLHLQACKMLKSLPCS----LFK-LKSLEDLNLCRCSNLR----RFPEE 636 (945)
Q Consensus 572 L~~L~Ls~~~i~~lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~~----i~~-l~~L~~L~Ls~~~~~~----~lp~~ 636 (945)
|++|+|++|.++..+.. +..+ ++|++|+|++|......+.. +.. .++|++|+|++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88899988888755432 4444 78888888888743332222 333 3588888888876553 33444
Q ss_pred cCCcc-cCccccccCCCCccCCc-----cccCC-CCCcEEEcccCCCCccCccccccccccCC-CCCCCEEeccCCCCCc
Q 041079 637 IGNVE-ASNSLYAYGTASSEVPS-----SIVRS-NNFRFLSFRESRGDKQMGLSLLISLSSDG-LHSLKSLCLHNCGVTR 708 (945)
Q Consensus 637 l~~l~-~L~~L~l~~~~~~~lp~-----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~l~~ 708 (945)
+..+. +|++|++++|.+...+. .+..+ ++|+.|++++|..... +. ..++..+.. .++|+.|+|++|.++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-SY-AELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-CH-HHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-HH-HHHHHHHhcCCCCceEEECcCCCCCc
Confidence 44444 78888888887765443 33444 4788888877763211 11 112233333 3477778887777765
Q ss_pred cC-----cccCCCCCCCEEECCCCCCc--------ccchhhhCCCCCCEEeeccCCCCc
Q 041079 709 LP-----ESLGRLSLLEELDLRRNNFE--------RVPESIIQLSKLNYLYLSYCQRLQ 754 (945)
Q Consensus 709 lp-----~~l~~l~~L~~L~Ls~n~l~--------~lp~~i~~l~~L~~L~L~~c~~l~ 754 (945)
.+ ..+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+...
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 32 34566777778887777633 333455667777777777776433
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=4.1e-17 Score=195.50 Aligned_cols=277 Identities=13% Similarity=-0.008 Sum_probs=162.0
Q ss_pred ccCcCccccccccccCCCCCccccccCcceeEEEecCCcCC-ccCCCCCCCccccccceeeecCCCCCCCCCC-ccCCcc
Q 041079 494 TKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFF-TKTPKPSFIPYLKELVILNLRGCKGLKKLPE-ISSLSN 571 (945)
Q Consensus 494 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l-~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~l~~ 571 (945)
..+++|+.|++.++.+.+ ++..+..+++|+.|++++.... ...+....+.++++|+.|+++++. ...+|. +..+++
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQ 294 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGG
T ss_pred hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCC
Confidence 344555555555544433 3334445555555555432211 112233445566667777776643 333443 345777
Q ss_pred cceEeecCCCCc--ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccC----------CCCCCc--cCCcc
Q 041079 572 IEKIILSGTAIE--ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCR----------CSNLRR--FPEEI 637 (945)
Q Consensus 572 L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~----------~~~~~~--lp~~l 637 (945)
|++|+|++|.++ .++..+..+++|+.|++.++..-..++.....+++|++|++++ |...+. ++...
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 777777777765 2333356777777777774432233444344577788888874 544432 22323
Q ss_pred CCcccCccccccCCCCcc-CCccccC-CCCCcEEEccc---CCCCccCccccccccccCCCCCCCEEeccCCC--CCc-c
Q 041079 638 GNVEASNSLYAYGTASSE-VPSSIVR-SNNFRFLSFRE---SRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG--VTR-L 709 (945)
Q Consensus 638 ~~l~~L~~L~l~~~~~~~-lp~~l~~-l~~L~~L~l~~---~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--l~~-l 709 (945)
..+++|++|+++.+.+.. .+..+.. +++|+.|++++ |..+...+....++..+.++++|+.|++++|. ++. .
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 456778888886666442 2233443 77888888874 33333333222233345567888888887654 442 2
Q ss_pred Cccc-CCCCCCCEEECCCCCCc--ccchhhhCCCCCCEEeeccCCCCcc-cCCc---ccccceEeeccCc
Q 041079 710 PESL-GRLSLLEELDLRRNNFE--RVPESIIQLSKLNYLYLSYCQRLQS-LPEL---PCNLILLYADHCT 772 (945)
Q Consensus 710 p~~l-~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~l~~-lp~l---~~~L~~L~~~~c~ 772 (945)
+..+ ..+++|++|+|++|+++ .++..+..+++|+.|+|++|+.... ++.+ .++|+.|++++|.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 2223 34778999999988887 4666677888899999999884321 3322 4788888888887
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.7e-15 Score=153.79 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=92.9
Q ss_pred cCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccc
Q 041079 567 SSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSL 646 (945)
Q Consensus 567 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 646 (945)
..+++|++|++++|.|+.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|...+..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44667777777777777777 57777777777777773 44444 46677777777777776655556666666666666
Q ss_pred cccCCCCcc-CCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCC-CCccCcccCCCCCCCEEEC
Q 041079 647 YAYGTASSE-VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG-VTRLPESLGRLSLLEELDL 724 (945)
Q Consensus 647 ~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L 724 (945)
++++|.+.. .|..+. .+++|+.|++++|. +..+| .+..+++|+.|+|
T Consensus 118 ~Ls~n~i~~~~~~~l~------------------------------~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 118 DISHSAHDDSILTKIN------------------------------TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp ECCSSBCBGGGHHHHT------------------------------TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred EecCCccCcHhHHHHh------------------------------hCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 666655443 233333 34455555555554 44444 4555666666666
Q ss_pred CCCCCcccchhhhCCCCCCEEeeccCC
Q 041079 725 RRNNFERVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 725 s~n~l~~lp~~i~~l~~L~~L~L~~c~ 751 (945)
++|.++.++ .+..+++|+.|++++|+
T Consensus 167 ~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 167 QFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 666666655 55666666666666665
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.6e-15 Score=152.82 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=102.6
Q ss_pred eEeecCCCCcccCccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 574 KIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 574 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
.++.+++.++.+|..+ .++|++|++++|.. ..+| ..+.++++|++|++++|...+..+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444444455455433 23555555555542 2333 234455555555555554433323334555555555555555
Q ss_pred CccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCCCCCc
Q 041079 653 SSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 653 ~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 730 (945)
+..+|.. +..+++|+.|++++|... ...+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQ------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCc------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 5555543 455666666666665421 11222355677888888888888876654 677888888888888654
Q ss_pred ccchhhhCCCCCCEEeeccCCCCcccCCccccc
Q 041079 731 RVPESIIQLSKLNYLYLSYCQRLQSLPELPCNL 763 (945)
Q Consensus 731 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~l~~~L 763 (945)
+.+++|+.|+++.|+..+.+|....++
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 345678888888888888887655444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=8.5e-16 Score=163.60 Aligned_cols=170 Identities=24% Similarity=0.249 Sum_probs=108.4
Q ss_pred cccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 545 YLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
++.++..++++++. ...++.+..+++|++|++++|.|+.+| .+..+++|++|+|++|. +..+|. +.++++|++|+|
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCC-cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 45556666666654 333444555666666666666666666 46666666666666665 444444 556666666666
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 704 (945)
++|. +..+|.... ++|+.|++++|.... + ..+..+++|+.|++++|
T Consensus 93 ~~N~------------------------l~~l~~~~~--~~L~~L~L~~N~l~~-------~-~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 93 NRNR------------------------LKNLNGIPS--ACLSRLFLDNNELRD-------T-DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp CSSC------------------------CSCCTTCCC--SSCCEEECCSSCCSB-------S-GGGTTCTTCCEEECTTS
T ss_pred CCCc------------------------cCCcCcccc--CcccEEEccCCccCC-------C-hhhcCcccccEEECCCC
Confidence 6654 333332221 555666666554311 1 12556778888888888
Q ss_pred CCCccCcccCCCCCCCEEECCCCCCcccchhhhCCCCCCEEeeccCCCCc
Q 041079 705 GVTRLPESLGRLSLLEELDLRRNNFERVPESIIQLSKLNYLYLSYCQRLQ 754 (945)
Q Consensus 705 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~ 754 (945)
.++.++ .+..+++|+.|+|++|+++.+ ..+..+++|+.|++++|+...
T Consensus 139 ~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 139 KLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 888775 577888888888888888877 577888888888888887443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.5e-15 Score=154.21 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred cccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 545 YLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
.+++|+.|++++|... .+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++++++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3444445555544322 3444445555555555555554443 4555666666666666544445555666666666666
Q ss_pred cCCCCCCccCCccCCcccCccccccCCC-CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTA-SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN 703 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 703 (945)
++|...+..|..++.+++|++|++++|. +..+| .+.. +++|+.|++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~------------------------------l~~L~~L~l~~ 168 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT------------------------------LPELKSLNIQF 168 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG------------------------------CSSCCEEECTT
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcC------------------------------CCCCCEEECCC
Confidence 6665555555556666666666666654 44443 2333 34444444444
Q ss_pred CCCCccCcccCCCCCCCEEECCCCCC
Q 041079 704 CGVTRLPESLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 704 ~~l~~lp~~l~~l~~L~~L~Ls~n~l 729 (945)
|.+..++ .+..+++|++|++++|++
T Consensus 169 n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 169 DGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp BCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CCCcChH-HhccCCCCCEEEeeCccc
Confidence 4444444 445555666666666654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=9.3e-18 Score=198.05 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=111.9
Q ss_pred cCCcccceEeecCCCCcccCccccCCccccEEeccccc-------------cccccCcccCCCCCCCEEe-ccCCCCCCc
Q 041079 567 SSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACK-------------MLKSLPCSLFKLKSLEDLN-LCRCSNLRR 632 (945)
Q Consensus 567 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~-------------~l~~lp~~i~~l~~L~~L~-Ls~~~~~~~ 632 (945)
..+++|+.|+|++|.++.+|.++++|++|+.|++++|. ..+..|..++++++|+.|+ ++.|. ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 34566666666766666667777777777776665543 2344455555666666666 33221 111
Q ss_pred cCC------ccCC--cccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCC
Q 041079 633 FPE------EIGN--VEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 633 lp~------~l~~--l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 704 (945)
++. .+.. ...|+.|++++|.+..+|. ++.+++|+.|++++|... .+|..++.+++|+.|+|++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-------ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------ccchhhhcCCCCCEEECCCC
Confidence 110 0000 1136667777777777765 777777777777777632 24455667777777777777
Q ss_pred CCCccCcccCCCCCCCEEECCCCCCccc--chhhhCCCCCCEEeeccCCCCcc
Q 041079 705 GVTRLPESLGRLSLLEELDLRRNNFERV--PESIIQLSKLNYLYLSYCQRLQS 755 (945)
Q Consensus 705 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~l~~ 755 (945)
.++.+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+..+.
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 777776 677777777777777777766 67777777777777777764443
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=1.3e-14 Score=161.42 Aligned_cols=286 Identities=15% Similarity=0.152 Sum_probs=170.5
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhh--ccCCHHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQ--RSGGLACLRQELLS 214 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~--~~~~l~~l~~~ll~ 214 (945)
....|+||+.++++|.+.+...+++.|+|++|+|||||+++++++.. .+|+. ...... .......+...+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELIKELQS 83 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHHHHHHH
Confidence 56789999999999999887668999999999999999999998752 55554 322210 00133344444444
Q ss_pred HHhC----------------CCC--ccCCHHH----HHHHHc-CCCcEEEEecCCChH--------H-HHHHhcCCCCCC
Q 041079 215 KLLK----------------HEN--VILDIDL----NFRRLS-RMKVLIVFDDVTCFR--------Q-IKSLIRSPDWFM 262 (945)
Q Consensus 215 ~l~~----------------~~~--~~~~~~~----l~~~L~-~kr~LlVLDdv~~~~--------~-l~~l~~~~~~~~ 262 (945)
.+.. ... ...+... +.+... .++++|||||++... + +..+...... .
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~ 162 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-L 162 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-C
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-c
Confidence 3321 000 1122222 333332 249999999996632 2 2322221111 2
Q ss_pred CCCeEEEEecCccccc-----------cCC-cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 263 ADSRIIITTRNKQVLR-----------NCS-VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~-----------~~~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
++.++|+|++...+.. ..+ ....+++.+|+.+|+.+++....-...... ..+.+.++++.++|+|+
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPG 240 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 5778999988654211 011 235899999999999999987542211111 13567899999999999
Q ss_pred hHHHhhccccC-CCHHHHHH-HHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCCCChHHHHHHhhhc--CCC
Q 041079 331 ALEILGCSLFE-KEKEVWES-AINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKGEDVYPVMKFLDAS--GFY 406 (945)
Q Consensus 331 al~~lg~~L~~-~~~~~w~~-~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~--g~~ 406 (945)
++..++..+.. .+...+.. ..+.........+. .+.++ ++..+.++..+|+ .......+...+... +..
T Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~ 313 (350)
T 2qen_A 241 WLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELE---ELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIP 313 (350)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHH---HHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCC
Confidence 99998865422 22222211 11111110111111 11122 7889999999998 234445555544322 232
Q ss_pred c---ccchHHHHhcccceecCCEEe-hhHHHHHHHH
Q 041079 407 P---TTGISVLVDKSLIAISYNKIM-MHDLLQELGR 438 (945)
Q Consensus 407 ~---~~~i~~L~~~sLi~~~~~~~~-mHdli~~~~~ 438 (945)
. ...++.|.+.+||....+.|. .|++++++.+
T Consensus 314 ~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 314 EPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 2 345889999999988766765 4788887654
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=2.6e-17 Score=197.29 Aligned_cols=198 Identities=16% Similarity=0.007 Sum_probs=91.7
Q ss_pred CcccceEeecCCCCcccCccccCCccccEEeccccccc---cccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcc
Q 041079 569 LSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKML---KSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNS 645 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 645 (945)
+++|++|+|++|.+..+|..+..+++|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 44444444444444444444444444444444432211 122233444445555555442 22344444455555555
Q ss_pred ccccCCCCcc--CCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccC-----------CCCCc--cC
Q 041079 646 LYAYGTASSE--VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHN-----------CGVTR--LP 710 (945)
Q Consensus 646 L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-----------~~l~~--lp 710 (945)
|++++|.+.. ++..+..+++|+.|+++++. ....++.....+++|+.|++++ +.++. ++
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVI------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCcc------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 5555554321 11223445555555554221 0011122223456666666663 23331 23
Q ss_pred cccCCCCCCCEEECCCCCCc-ccchhhhC-CCCCCEEeecc---CCCCcccCC---------cccccceEeeccCcc
Q 041079 711 ESLGRLSLLEELDLRRNNFE-RVPESIIQ-LSKLNYLYLSY---CQRLQSLPE---------LPCNLILLYADHCTV 773 (945)
Q Consensus 711 ~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~-l~~L~~L~L~~---c~~l~~lp~---------l~~~L~~L~~~~c~~ 773 (945)
.....+++|++|+|+.|+++ ..+..+.. +++|+.|+|++ |..++..|. -.++|+.|++++|..
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 33344667777777666665 23334443 67777777763 333443321 135677777766553
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.7e-15 Score=161.30 Aligned_cols=173 Identities=18% Similarity=0.136 Sum_probs=128.3
Q ss_pred cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEE
Q 041079 519 HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLL 598 (945)
Q Consensus 519 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 598 (945)
.+.++..++++++.. .+. ..+..+++|++|++++|. +..+|.+..+++|++|+|++|.|+.+|. +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i-~~~---~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-TDL---VSQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCT-TSE---ECHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCc-ccc---cchhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 566677777876542 322 246788999999999986 5567888889999999999999999988 9999999999
Q ss_pred eccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCc
Q 041079 599 HLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDK 678 (945)
Q Consensus 599 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 678 (945)
+|++|. +..+|... . ++|++|++++|...+ +| .+..+++|+.|++++|.+..++ .
T Consensus 91 ~L~~N~-l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~------------------- 145 (263)
T 1xeu_A 91 SVNRNR-LKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-M------------------- 145 (263)
T ss_dssp ECCSSC-CSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-G-------------------
T ss_pred ECCCCc-cCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-H-------------------
Confidence 999997 66677533 3 888888888876543 33 3555555666665555554443 2
Q ss_pred cCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCcccch
Q 041079 679 QMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERVPE 734 (945)
Q Consensus 679 ~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 734 (945)
+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+...|.
T Consensus 146 -----------l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 146 -----------LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -----------GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -----------HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 34566777777777777766 567788888888888888776653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=2.3e-14 Score=149.21 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=87.5
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+.++.+++.++.+|..+. ++|++|+|++|...+..|..+.++++|++|+|++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555555443 555566666555444334455555556666665554322222233444444444444444
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCccc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFERV 732 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 732 (945)
+..+|. ..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.+
T Consensus 100 l~~l~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 100 LTVLPS-----------------------------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCCCCT-----------------------------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCccCh-----------------------------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc
Confidence 443332 223456677777777777777777777777777777777777776
Q ss_pred ch-hhhCCCCCCEEeeccCCCCc
Q 041079 733 PE-SIIQLSKLNYLYLSYCQRLQ 754 (945)
Q Consensus 733 p~-~i~~l~~L~~L~L~~c~~l~ 754 (945)
|. .+..+++|+.|+|++|+...
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCCccC
Confidence 63 46677777777777776443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=162.80 Aligned_cols=171 Identities=20% Similarity=0.194 Sum_probs=101.6
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCc-ccC-CCCCCCEEeccCCCCCCccCCccCCcccCccccccC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPC-SLF-KLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYG 650 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 650 (945)
+.++++++.++.+|..+. ..|+.|+|++|. +..++. .+. ++++|++|+|++|...+..|..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345555555555554442 335555555554 333332 233 555566666655554443344455555666666666
Q ss_pred CCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCccc----CCCCCCCEEECC
Q 041079 651 TASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPESL----GRLSLLEELDLR 725 (945)
Q Consensus 651 ~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls 725 (945)
|.+..++. .+..+++|+.|++++|... ...+..+.++++|+.|+|++|.+..+|..+ ..+++|+.|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIV------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCccc------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 65555544 3556666666666666531 223445667778888888888888777654 567888888888
Q ss_pred CCCCcccc-hhhhCCCC--CCEEeeccCCC
Q 041079 726 RNNFERVP-ESIIQLSK--LNYLYLSYCQR 752 (945)
Q Consensus 726 ~n~l~~lp-~~i~~l~~--L~~L~L~~c~~ 752 (945)
+|+|+.+| ..+..++. |+.|+|++|+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 88888777 35666666 37788888764
No 117
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=4.7e-15 Score=165.46 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=169.1
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhh-hccCCHHHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREES-QRSGGLACLRQELLSK 215 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s-~~~~~l~~l~~~ll~~ 215 (945)
....|+||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... ........+...+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHHHHHHH
Confidence 56789999999999999 877 899999999999999999999886532 45654 32210 0001222232222222
Q ss_pred Hh-------------CCC--------C--------ccCCHHHHHHHHcC---CCcEEEEecCCChH-----H----HHHH
Q 041079 216 LL-------------KHE--------N--------VILDIDLNFRRLSR---MKVLIVFDDVTCFR-----Q----IKSL 254 (945)
Q Consensus 216 l~-------------~~~--------~--------~~~~~~~l~~~L~~---kr~LlVLDdv~~~~-----~----l~~l 254 (945)
+. ..- . .......+.+.+.. ++++|||||++... + +..+
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~ 164 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYA 164 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHH
Confidence 21 100 0 01224444444432 48999999996532 1 2223
Q ss_pred hcCCCCCCCCCeEEEEecCccccc-----------cCC-cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHH
Q 041079 255 IRSPDWFMADSRIIITTRNKQVLR-----------NCS-VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVI 322 (945)
Q Consensus 255 ~~~~~~~~~gs~IIiTTR~~~v~~-----------~~~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~ 322 (945)
... .++.++|+|+|...... ..+ ....+++.+|+.+|+.+++...+.......... .+++
T Consensus 165 ~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~ 236 (357)
T 2fna_A 165 YDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVY 236 (357)
T ss_dssp HHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHH
T ss_pred HHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHH
Confidence 221 24678999999764311 111 136899999999999999987542212222221 7899
Q ss_pred HHhcCCcchHHHhhccccC-CCHHHHHHH-HHHHHhccCcchhhhhh-hhcc--CCChhhHhhhhhhcccCCCCChHHHH
Q 041079 323 QYAQGVPLALEILGCSLFE-KEKEVWESA-INKLKRFLHPSIQEVLK-VSYD--GLDDNEKNIFLDVACFFKGEDVYPVM 397 (945)
Q Consensus 323 ~~~~GlPLal~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~Sy~--~L~~~~k~~fl~~a~f~~~~~~~~l~ 397 (945)
+.++|+|+++..++..+.. .+...|... .+... ..+...+. +.++ .|++.++.++..+|+ .. ....+.
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~-~~~~l~ 309 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK--CG-KWSDVK 309 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-CHHHHH
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-CHHHHH
Confidence 9999999999999876532 333333221 11111 11111111 2221 678899999999998 22 555555
Q ss_pred HHhh-hcC--CC---cccchHHHHhcccceecCCEEe-hhHHHHHHH
Q 041079 398 KFLD-ASG--FY---PTTGISVLVDKSLIAISYNKIM-MHDLLQELG 437 (945)
Q Consensus 398 ~~~~-~~g--~~---~~~~i~~L~~~sLi~~~~~~~~-mHdli~~~~ 437 (945)
..+. ..| .. ....++.|.+.++|....+.|. .|++++++.
T Consensus 310 ~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 310 RALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 4332 223 22 2345889999999988766666 688888763
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.1e-14 Score=147.10 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=77.4
Q ss_pred ccceeeecCCCCCCCCCC-ccCCcccceEeecCCCCcccCcc-ccCCccccEEeccccccccccCc-ccCCCCCCCEEec
Q 041079 548 ELVILNLRGCKGLKKLPE-ISSLSNIEKIILSGTAIEELPSS-VGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNL 624 (945)
Q Consensus 548 ~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 624 (945)
+|++|+|++|......+. +..+++|++|+|++|.++.+|.. +..+++|++|+|++|. +..+|. .+.++++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEc
Confidence 455555555543322222 33455555555555555555443 3455555555555554 223332 2345555555555
Q ss_pred cCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCC
Q 041079 625 CRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 625 s~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 704 (945)
++|...+..+..+..+++|++|++++|.+..+|.. .+..+++|+.|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----------------------------~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-----------------------------VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-----------------------------TTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-----------------------------HhccCCCccEEEecCC
Confidence 55444333333344455555555555544444432 2344555555555555
Q ss_pred CCCccCcccCCCCCCCEEECCCCCCc-ccchhhhCCCC
Q 041079 705 GVTRLPESLGRLSLLEELDLRRNNFE-RVPESIIQLSK 741 (945)
Q Consensus 705 ~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~ 741 (945)
.+. +.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 159 ~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Cee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 332 23345666666666555 56655555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=9.3e-17 Score=189.50 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=144.6
Q ss_pred cccccceeeecCCCCCCCCC-CccCCcccceEeecCCC--------------CcccCccccCCccccEEe-ccccccccc
Q 041079 545 YLKELVILNLRGCKGLKKLP-EISSLSNIEKIILSGTA--------------IEELPSSVGCLSGLVLLH-LQACKMLKS 608 (945)
Q Consensus 545 ~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~Ls~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~~l~~ 608 (945)
.+++|+.|+|++|.. ..+| .+.++++|+.|++++|. ...+|..++.|++|+.|+ ++.|. +..
T Consensus 347 ~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred cCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 455666667777653 3455 56667777777776553 234566777888888888 44432 222
Q ss_pred cCc------ccCC--CCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccC
Q 041079 609 LPC------SLFK--LKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQM 680 (945)
Q Consensus 609 lp~------~i~~--l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 680 (945)
++. .+.. ...|++|+|++|... .+|. ++++++|+.|++++|.+..+|..++.+++|+.|++++|....
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--
Confidence 211 0111 125999999998654 5887 999999999999999999999999999999999999998532
Q ss_pred ccccccccccCCCCCCCEEeccCCCCCcc--CcccCCCCCCCEEECCCCCCcccchhh----hCCCCCCEEee
Q 041079 681 GLSLLISLSSDGLHSLKSLCLHNCGVTRL--PESLGRLSLLEELDLRRNNFERVPESI----IQLSKLNYLYL 747 (945)
Q Consensus 681 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L 747 (945)
+| .+..+++|+.|+|++|.++.+ |..++.+++|+.|+|++|+++.+|+.+ ..+++|+.|++
T Consensus 501 -----lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -----VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 34 578899999999999999987 899999999999999999999887543 34889998864
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=4.1e-14 Score=146.26 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=84.6
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+.++++++.++.+|..+. ++|+.|+|++|......+..+..+++|++|+|++|...+..|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666677777776554 567777777776333333356677777777777777666566777777777777777777
Q ss_pred CccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCC
Q 041079 653 SSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 653 ~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l 729 (945)
+..+|.. +..+++|+.|++++|... ...+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKIN------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCC------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7666653 234444444444444321 1112233444444444454444444432 244444455555554444
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=6.6e-14 Score=144.69 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=69.4
Q ss_pred eEeecCCCCcccCccccCCccccEEecccccccccc-C-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCC
Q 041079 574 KIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSL-P-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGT 651 (945)
Q Consensus 574 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~ 651 (945)
.++++++.++.+|..+. ..++.|+|++|. +..+ | ..+.++++|++|+|++|...+..|..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 55555555555555443 334566666655 3333 2 22455666666666665544433344555555555555555
Q ss_pred CCccCCcc-ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCC
Q 041079 652 ASSEVPSS-IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 652 ~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l 729 (945)
.+..+|.. +..+++|+.|++++|... ...|..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRIT------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCC------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCC------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 55544432 333344444444333311 11122233444444444444444443 33444444555555555444
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=1e-13 Score=158.06 Aligned_cols=276 Identities=11% Similarity=0.055 Sum_probs=165.2
Q ss_pred CCCCccchHHHHHHHHhhh-c--------ccCEEEE--EecCCCcHHHHHHHHHHHhhcc-----ccc-eEEEEechhhh
Q 041079 137 NNNQLVGVESRVVAIQSLL-G--------AAPLLGI--WGIGGIGKTIIARAIFDKISSD-----FEG-SCFLENVREES 199 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L-~--------~~~~v~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~s 199 (945)
.+..++||+.+++++.+.+ . ..+.+.| +|++|+||||||++++++.... +.. .+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF--- 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CC---
Confidence 4478999999999999988 3 3456777 9999999999999999987653 232 34443 21
Q ss_pred hccCCHHHHHHHHHHHHhCCCCc-cCC----HHHHHHHHc--CCCcEEEEecCCCh--------HHHHHHhcCCCCC---
Q 041079 200 QRSGGLACLRQELLSKLLKHENV-ILD----IDLNFRRLS--RMKVLIVFDDVTCF--------RQIKSLIRSPDWF--- 261 (945)
Q Consensus 200 ~~~~~l~~l~~~ll~~l~~~~~~-~~~----~~~l~~~L~--~kr~LlVLDdv~~~--------~~l~~l~~~~~~~--- 261 (945)
.. .....+...++..+...... ..+ ...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 96 ~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 96 NA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 22 55667888888877543221 111 344455554 67999999999663 3344433222111
Q ss_pred C--CCCeEEEEecCccccccC---------CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhc----
Q 041079 262 M--ADSRIIITTRNKQVLRNC---------SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQ---- 326 (945)
Q Consensus 262 ~--~gs~IIiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~---- 326 (945)
+ ....+|+|||...+.... .....+++++|+.+++.++|...+.....+..-..+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 1 334578888765432110 1123499999999999999976542111111112456788999999
Q ss_pred --CCcchHHHhhccc------cC---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCC----CC
Q 041079 327 --GVPLALEILGCSL------FE---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFK----GE 391 (945)
Q Consensus 327 --GlPLal~~lg~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~----~~ 391 (945)
|+|..+..++... .+ .+.+.+..++..... ...+.-+++.|++.++.++..+|.+.. ..
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997555443221 11 233444333322110 234556778899999999999997642 22
Q ss_pred ChHHHHH----Hh-hhcCCCc------ccchHHHHhcccceec
Q 041079 392 DVYPVMK----FL-DASGFYP------TTGISVLVDKSLIAIS 423 (945)
Q Consensus 392 ~~~~l~~----~~-~~~g~~~------~~~i~~L~~~sLi~~~ 423 (945)
....+.. +. ...|... ...++.|.+.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 3333222 22 2233221 2447889999999764
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=2.7e-16 Score=188.42 Aligned_cols=204 Identities=14% Similarity=0.080 Sum_probs=106.3
Q ss_pred CcccceEeecCCCCcc--cCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCC--------CCCCc--cCCc
Q 041079 569 LSNIEKIILSGTAIEE--LPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRC--------SNLRR--FPEE 636 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~--------~~~~~--lp~~ 636 (945)
+++|++|+|++|.++. ++..+..+++|+.|++++|.....++.....+++|++|++++| ...+. +...
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 4555666665555441 2222445556666666555211112222223556666666332 11111 0011
Q ss_pred cCCcccCccccccCCCCccC-Cccc-cCCCCCcEEEcc-----cCCCCccCccccccccccCCCCCCCEEeccCCCCCc-
Q 041079 637 IGNVEASNSLYAYGTASSEV-PSSI-VRSNNFRFLSFR-----ESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR- 708 (945)
Q Consensus 637 l~~l~~L~~L~l~~~~~~~l-p~~l-~~l~~L~~L~l~-----~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~- 708 (945)
...+++|+.|.+..+.+... +..+ ..+++|+.|+++ +|..+...+....++..+..+++|+.|+|++ .++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 12245566665555554321 1122 246777888777 3444443332222333345667888888866 4442
Q ss_pred cCcccCC-CCCCCEEECCCCCCc--ccchhhhCCCCCCEEeeccCCCCccc----CCcccccceEeeccCcc
Q 041079 709 LPESLGR-LSLLEELDLRRNNFE--RVPESIIQLSKLNYLYLSYCQRLQSL----PELPCNLILLYADHCTV 773 (945)
Q Consensus 709 lp~~l~~-l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~l~~l----p~l~~~L~~L~~~~c~~ 773 (945)
.+..+.. +++|+.|+|++|.++ .++.....+++|+.|+|++|+..... ..-.++|+.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2333333 677888888888776 23323366788888888888763221 12246788888888865
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.8e-13 Score=141.36 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=122.8
Q ss_pred cEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccC-CccccCCCCCcEEEcccC
Q 041079 596 VLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRES 674 (945)
Q Consensus 596 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 674 (945)
+.++++++. +..+|..+. ++|++|++++|...+..+..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888876 788888664 7899999999887666666889999999999999998877 668899999999999998
Q ss_pred CCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCC
Q 041079 675 RGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 675 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 752 (945)
... ...+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 91 ~l~------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KIT------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCC------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 742 22233467889999999999999976 5678899999999999999998875 578899999999999874
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=141.66 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=125.2
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccC-CccCCcccCccccccCCCCccCCc-cccCCCCCcEEEcc
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFP-EEIGNVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFR 672 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~ 672 (945)
-+.+++++|. ++.+|..+ .+.+++|+|++|...+..| ..+..+++|+.|++++|.+..++. .+..+++|+.|+++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3589999877 77889766 3567999999988765544 347899999999999999988876 78999999999999
Q ss_pred cCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCccc-chhhhCCCCCCEEeeccC
Q 041079 673 ESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERV-PESIIQLSKLNYLYLSYC 750 (945)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 750 (945)
+|... ...+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|
T Consensus 90 ~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 90 SNRLE------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCC------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccC------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 99842 23344577899999999999999976 67889999999999999999977 678899999999999998
Q ss_pred CCC
Q 041079 751 QRL 753 (945)
Q Consensus 751 ~~l 753 (945)
+..
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 754
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=3.2e-16 Score=187.86 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=134.5
Q ss_pred ccCcCccccccccccCCCCCccccc-cCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCC----CCCcc-
Q 041079 494 TKMPKLRFLKFYRSSINGENKCKQQ-HHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKK----LPEIS- 567 (945)
Q Consensus 494 ~~~~~Lr~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~----lp~~~- 567 (945)
..+++|+.|+++++.+.+.....+. .+++|+.|+|++|..+........+.++++|++|+|++|..... ++.+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3455666666666554443222222 45566666666554333211111223455666666666552211 12222
Q ss_pred CCcccceEeecCCC--Cc--ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCC--------------
Q 041079 568 SLSNIEKIILSGTA--IE--ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSN-------------- 629 (945)
Q Consensus 568 ~l~~L~~L~Ls~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~-------------- 629 (945)
.+++|++|++++|. +. .++..+..+++|++|++++|..++.+|..+.++++|++|++++|..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 35566666666654 21 1222223446666666666544444555555555566665443321
Q ss_pred ----------------CCccCCccCCcccCccccccCCCCcc--CCccccCCCCCcEEEcccCCCCccCccccccccccC
Q 041079 630 ----------------LRRFPEEIGNVEASNSLYAYGTASSE--VPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSD 691 (945)
Q Consensus 630 ----------------~~~lp~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 691 (945)
...+|..+..+++|++|++++|.+.. ++..+..+++|+.|++++|. . ...++....
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~----~~~l~~l~~ 335 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--E----DAGLEVLAS 335 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--H----HHHHHHHHH
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--C----HHHHHHHHH
Confidence 12233334455667777776666432 22234566777777776651 1 111111222
Q ss_pred CCCCCCEEeccC---------CCCCc--cCcccCCCCCCCEEECCCCCCcc-cchhh-hCCCCCCEEeec-----cCCCC
Q 041079 692 GLHSLKSLCLHN---------CGVTR--LPESLGRLSLLEELDLRRNNFER-VPESI-IQLSKLNYLYLS-----YCQRL 753 (945)
Q Consensus 692 ~l~~L~~L~L~~---------~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~-lp~~i-~~l~~L~~L~L~-----~c~~l 753 (945)
.+++|+.|++++ +.++. +......+++|+.|.+++|+++. .+..+ ..+++|+.|+|+ +|..+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 466777777733 23331 11112236677777777777762 22233 357788888887 44555
Q ss_pred cccCC---------cccccceEeecc
Q 041079 754 QSLPE---------LPCNLILLYADH 770 (945)
Q Consensus 754 ~~lp~---------l~~~L~~L~~~~ 770 (945)
+..|. ..++|+.|++++
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC
Confidence 54332 135677777755
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=2.4e-12 Score=145.06 Aligned_cols=267 Identities=18% Similarity=0.134 Sum_probs=168.8
Q ss_pred CCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhcc------c-c-ceEEEEechhhhhccC
Q 041079 138 NNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSD------F-E-GSCFLENVREESQRSG 203 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~------F-~-~~~~~~~~~~~s~~~~ 203 (945)
++.++||+.+++++...+.. .+.+.|+|++|+||||||+++++.+... + . ..+++. ... . .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~---~-~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE---V-G 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH---H-C
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc---C-C
Confidence 36799999999999987765 6789999999999999999999987443 2 2 233443 222 1 3
Q ss_pred -CHHHHHHHHHHHHhCCCCcc--C-C---HHHHHHHHcCCCcEEEEecCCChHH-------HHHHhcCCCCCCCCCeEEE
Q 041079 204 -GLACLRQELLSKLLKHENVI--L-D---IDLNFRRLSRMKVLIVFDDVTCFRQ-------IKSLIRSPDWFMADSRIII 269 (945)
Q Consensus 204 -~l~~l~~~ll~~l~~~~~~~--~-~---~~~l~~~L~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~~~gs~IIi 269 (945)
....+...++..+.+..... . . ...+.+.+..++.+|||||++.... +..+.... .+.+||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 55677777777774332211 1 1 4556667776666999999976432 34444332 6788999
Q ss_pred EecCccccccC------CcceEEEcCCCCHHHHHHHHHHhhh---cCCCCCccHHHHHHHHHHHhc---CCcc-hHHHhh
Q 041079 270 TTRNKQVLRNC------SVKEIYEMKELRDDHALELFSRHAF---KQNHPDVGYEELSSRVIQYAQ---GVPL-ALEILG 336 (945)
Q Consensus 270 TTR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~---GlPL-al~~lg 336 (945)
||+........ .....+++++++.++..+++...+. .....++ +....++++++ |.|. |+..+-
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 99876321111 1123899999999999999998753 2222222 45667777787 8886 433332
Q ss_pred ccc------cCCCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCCCChH-HHHHHhhhcCCCc--
Q 041079 337 CSL------FEKEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKGEDVY-PVMKFLDASGFYP-- 407 (945)
Q Consensus 337 ~~L------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~~-~l~~~~~~~g~~~-- 407 (945)
... ...+.+.+..++..... ..+.-+++.|++.++..+..++....+.+.. ....+....|..+
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 221 12467777777766532 3456677889999999888887611101121 2233333333222
Q ss_pred ----ccchHHHHhcccceec
Q 041079 408 ----TTGISVLVDKSLIAIS 423 (945)
Q Consensus 408 ----~~~i~~L~~~sLi~~~ 423 (945)
...+..|.++++|...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 2236778888888753
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.1e-14 Score=177.27 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=71.5
Q ss_pred CccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCc
Q 041079 565 EISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASN 644 (945)
Q Consensus 565 ~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 644 (945)
.+..+++|+.|+|++|.+..+|..+..+++|++|+|++|. +..+|..+++|++|++|+|++|... .+|..+++|.+|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 3445666666666666666666666666666666666665 3466666666666677776666544 5666666666677
Q ss_pred cccccCCCCccCCccccCCCCCcEEEcccCCC
Q 041079 645 SLYAYGTASSEVPSSIVRSNNFRFLSFRESRG 676 (945)
Q Consensus 645 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 676 (945)
+|+|++|.+..+|..++.+++|+.|+|++|..
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 77776666666666666677777777766663
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.6e-13 Score=150.49 Aligned_cols=169 Identities=22% Similarity=0.199 Sum_probs=136.9
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccC-CcccCccccccCCCCccCCc-cccCCCCCcEEEcc
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIG-NVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFR 672 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~ 672 (945)
-++++++++. +..+|..+. +.+++|+|++|...+..+..+. ++.+|++|++++|.+..++. .+..+++|+.|+++
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3688998876 788998663 5699999999887665566676 89999999999999998875 68999999999999
Q ss_pred cCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCCcccchhh----hCCCCCCEEee
Q 041079 673 ESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNFERVPESI----IQLSKLNYLYL 747 (945)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L 747 (945)
+|... ...+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|..+ ..+++|+.|+|
T Consensus 97 ~N~l~------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLH------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcCC------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 99842 23344578899999999999999986 678999999999999999999999765 57999999999
Q ss_pred ccCCCCcccCC-c---ccc--cceEeeccCcc
Q 041079 748 SYCQRLQSLPE-L---PCN--LILLYADHCTV 773 (945)
Q Consensus 748 ~~c~~l~~lp~-l---~~~--L~~L~~~~c~~ 773 (945)
++|+. ..+|. . .++ ++.|++++++-
T Consensus 171 ~~N~l-~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 171 SSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CSSCC-CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCC-CccCHHHhhhccHhhcceEEecCCCc
Confidence 99974 45552 1 222 47788887653
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=8.7e-13 Score=137.18 Aligned_cols=148 Identities=23% Similarity=0.278 Sum_probs=101.7
Q ss_pred ceeeecCCCCCCCCCCccCCcccceEeecCCCCccc-CccccCCccccEEeccccccccccCc-ccCCCCCCCEEeccCC
Q 041079 550 VILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEEL-PSSVGCLSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRC 627 (945)
Q Consensus 550 ~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~ 627 (945)
+.++.+++. +..+|.. -.++|++|+|++|.|+.+ |..+..+++|++|+|++|. ++.+|. .+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~-l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSC-CSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCC-cCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 445665543 4445521 137788888888888866 5567888888888888887 455654 4577888888888888
Q ss_pred CCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCC
Q 041079 628 SNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVT 707 (945)
Q Consensus 628 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 707 (945)
...+..+..+..+++|++|++++|.+..+|..+.. +++|+.|+|++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~------------------------------l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER------------------------------LTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGG------------------------------CTTCSEEECCSSCCC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCccccc------------------------------CCCCCEEECCCCcCC
Confidence 76655455577888888888888887777765544 445555555555566
Q ss_pred ccCc-ccCCCCCCCEEECCCCCCc
Q 041079 708 RLPE-SLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 708 ~lp~-~l~~l~~L~~L~Ls~n~l~ 730 (945)
.+|. .+..+++|+.|+|++|.+.
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5553 4677788888888888776
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.8e-14 Score=173.70 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=62.9
Q ss_pred cCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCcccccccc
Q 041079 609 LPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISL 688 (945)
Q Consensus 609 lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 688 (945)
.|..+..+++|+.|+|++|... .+|..+.++++|++|+|++|.+..+|..++.+++|+.|+|++|... .+|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-------~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-------SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-------SCCS
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-------ccCh
Confidence 3444555555555555554433 4555555555555555555555555555555666666666655531 2344
Q ss_pred ccCCCCCCCEEeccCCCCCccCcccCCCCCCCEEECCCCCCc
Q 041079 689 SSDGLHSLKSLCLHNCGVTRLPESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 689 ~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 730 (945)
.+.++++|+.|+|++|.++.+|..++.+++|+.|+|++|.|+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 455566666666666666666666666666666666666666
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.4e-13 Score=135.82 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=45.1
Q ss_pred cccceEeecCCCCc--ccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCcccc
Q 041079 570 SNIEKIILSGTAIE--ELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLY 647 (945)
Q Consensus 570 ~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 647 (945)
++|++|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|...+.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56666666666666 666666667777777777766 4444 4566666677777766655443443333333333333
Q ss_pred cc
Q 041079 648 AY 649 (945)
Q Consensus 648 l~ 649 (945)
++
T Consensus 102 Ls 103 (168)
T 2ell_A 102 LS 103 (168)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.4e-13 Score=134.00 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=78.8
Q ss_pred CCCCEEeccCCCCC-CccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCC
Q 041079 617 KSLEDLNLCRCSNL-RRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHS 695 (945)
Q Consensus 617 ~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 695 (945)
++|++|++++|... +.+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|..... +|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG------LDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC------CCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH------HHHHHhhCCC
Confidence 34444444444433 34444444444455555555444444 4455555666666666553211 2333344677
Q ss_pred CCEEeccCCCCCccC--cccCCCCCCCEEECCCCCCcccch----hhhCCCCCCEEeeccCC
Q 041079 696 LKSLCLHNCGVTRLP--ESLGRLSLLEELDLRRNNFERVPE----SIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 696 L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c~ 751 (945)
|+.|++++|.++.+| ..+..+++|++|+|++|.++.+|. .+..+++|+.|++++|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777777777777765 677788888888888888887776 67788888888888876
No 134
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.43 E-value=5.6e-15 Score=140.26 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=70.1
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHHHhhcCCEEEeEeeeecCC----ccccccCchhhHH
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEFKREYAQIVIPVFYRVDPS----DLRNQSGTFGDSY 76 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps----~vr~q~g~~~~~~ 76 (945)
+.+|+.|.+++.+||++||++|+|||+||++|.||+.|+.+++.|...+...||||||+|+++ .+|........
T Consensus 48 ~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~-- 125 (146)
T 3ub2_A 48 ATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGR-- 125 (146)
T ss_dssp -----CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETT--
T ss_pred ccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeecc--
Confidence 468999999999999999999999999999999999999999998743344788999999854 45665432221
Q ss_pred HHHHHHhhhchhhHHhHHHHH
Q 041079 77 LKLEERFKENSKKLQSWRNAL 97 (945)
Q Consensus 77 ~~~~~~~~~~~~~~~~w~~aL 97 (945)
.++..+....+.|.+|++||
T Consensus 126 -~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 126 -GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp -SGGGGHHHHHHHHHHHHTTC
T ss_pred -ChHhhHHHHHHHHHHHHHhc
Confidence 23445555667788998775
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=9.5e-12 Score=140.16 Aligned_cols=305 Identities=15% Similarity=0.131 Sum_probs=175.4
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhcccc---ceEEEEechhhhhccCCHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFE---GSCFLENVREESQRSGGLAC 207 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~l~~ 207 (945)
.++.|+||+.+++++.+++.. .+.+.|+|++|+||||||+++++.....+. ..+|+. ... . .....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~---~-~~~~~ 92 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQ---I-DTPYR 92 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHH---H-CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCC---C-CCHHH
Confidence 457899999999999998874 678999999999999999999998766542 234443 221 1 34445
Q ss_pred HHHHHHHHHhCCCCcc-CC----HHHHHHHHc--CCCcEEEEecCCCh------HHHHHHhcCCCC-CCCCCeEEEEecC
Q 041079 208 LRQELLSKLLKHENVI-LD----IDLNFRRLS--RMKVLIVFDDVTCF------RQIKSLIRSPDW-FMADSRIIITTRN 273 (945)
Q Consensus 208 l~~~ll~~l~~~~~~~-~~----~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~~~-~~~gs~IIiTTR~ 273 (945)
+...++..+....... .+ ...+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 5555555443221111 11 333444443 45899999998653 234444322211 1345677888886
Q ss_pred ccccccCC-------cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhc---CCcchHHH-hhccc---
Q 041079 274 KQVLRNCS-------VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQ---GVPLALEI-LGCSL--- 339 (945)
Q Consensus 274 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~---GlPLal~~-lg~~L--- 339 (945)
........ ....+.+++++.++..+++...+........-..+....++++++ |.|..+.. +....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64332221 125899999999999999988653211111222456677777777 99984433 22211
Q ss_pred --c---CCCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCC-CCC---hHHH----HHHhhhcCCC
Q 041079 340 --F---EKEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFK-GED---VYPV----MKFLDASGFY 406 (945)
Q Consensus 340 --~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~-~~~---~~~l----~~~~~~~g~~ 406 (945)
. ..+.+.++.++.... ...+.-++..+++.++.++..++.+.+ +.. ...+ ..+....|..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 0 135566666655442 234566678899999999988886433 211 2222 2223333322
Q ss_pred c------ccchHHHHhcccceecCCEEehhHHHHHHHHHHHhhcc-CCCCcccccccchhhhhhhhh-ccC
Q 041079 407 P------TTGISVLVDKSLIAISYNKIMMHDLLQELGREIVRQES-INPRNRSRLWHHEDIYEVLKY-NMG 469 (945)
Q Consensus 407 ~------~~~i~~L~~~sLi~~~~~~~~mHdli~~~~~~i~~~e~-~~~~~~s~l~~~~d~~~~l~~-~~~ 469 (945)
+ ...++.|.+.++|..... .... ......+..|+++++..++.+ +..
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~~~----------------~~~~~g~y~~~~l~~~~~~v~~~l~~~~~~ 380 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAKVV----------------NRGRYGKTKEIGLAVDKNIIVRSLIESDSR 380 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEEC----------------CCTTSCCCEEEEESSCSHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEee----------------cCCCCCCeEEEEeCCCHHHHHHHHhcCChh
Confidence 2 234677777787764310 0000 011123345788888888876 543
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.2e-13 Score=129.36 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=77.6
Q ss_pred ccccEEeccccccc-cccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEc
Q 041079 593 SGLVLLHLQACKML-KSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSF 671 (945)
Q Consensus 593 ~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l 671 (945)
++|+.|++++|... +.+|..+..+++|++|++++|.. ..+ ..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~-~~~~~l~~L~~L~L 71 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------------------------TSI-ANLPKLNKLKKLEL 71 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC------------------------CCC-TTCCCCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC------------------------CCc-hhhhcCCCCCEEEC
Confidence 55666666666533 35555555666666666665543 333 23444445555555
Q ss_pred ccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC--cccCCCCCCCEEECCCCCCcccch----hhhCCCCCCEE
Q 041079 672 RESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP--ESLGRLSLLEELDLRRNNFERVPE----SIIQLSKLNYL 745 (945)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L 745 (945)
++|.... .+|..+..+++|+.|++++|.++.+| ..++.+++|++|++++|.++.+|. .+..+++|+.|
T Consensus 72 s~n~i~~------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 72 SDNRVSG------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CSSCCCS------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCCcccc------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 5544211 12233344667777777777777654 677888888888888888887775 57788888888
Q ss_pred eecc
Q 041079 746 YLSY 749 (945)
Q Consensus 746 ~L~~ 749 (945)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 8763
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=2.3e-11 Score=137.10 Aligned_cols=239 Identities=15% Similarity=0.153 Sum_probs=150.1
Q ss_pred CCCCccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhccc-----cc-eEEEEechhhhhccCC
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDF-----EG-SCFLENVREESQRSGG 204 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~s~~~~~ 204 (945)
.++.++||+.+++++..++.. .+.+.|+|++|+||||+|+++++.....+ .. .+++. .. .. ..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~---~~-~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-AR---HR-ET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TT---TS-CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CC---cC-CC
Confidence 447899999999999998833 67899999999999999999999775432 22 23332 21 11 45
Q ss_pred HHHHHHHHHHHHhCCCCccC-C----HHHHHHHH--cCCCcEEEEecCCChHH-------HHHHhcCCCCC--CCCCeEE
Q 041079 205 LACLRQELLSKLLKHENVIL-D----IDLNFRRL--SRMKVLIVFDDVTCFRQ-------IKSLIRSPDWF--MADSRII 268 (945)
Q Consensus 205 l~~l~~~ll~~l~~~~~~~~-~----~~~l~~~L--~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gs~II 268 (945)
...+...++..+........ . ...+.+.+ .+++.+||||+++.... +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 56777777777754322211 1 34444455 34578999999976532 33333222111 3466888
Q ss_pred EEecCccccccC------C-cceEEEcCCCCHHHHHHHHHHhhhc---CCCCCccHHHHHHHHHHHhc---CCcc-hHHH
Q 041079 269 ITTRNKQVLRNC------S-VKEIYEMKELRDDHALELFSRHAFK---QNHPDVGYEELSSRVIQYAQ---GVPL-ALEI 334 (945)
Q Consensus 269 iTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~~~~~l~~~i~~~~~---GlPL-al~~ 334 (945)
.||+........ . ....+.+++++.++..+++...+.. ....++ +....++++++ |.|. ++.+
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHH
Confidence 888876332111 1 1257899999999999999987532 222222 34567777887 9994 3332
Q ss_pred hhccc---c--C---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCC
Q 041079 335 LGCSL---F--E---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKG 390 (945)
Q Consensus 335 lg~~L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~ 390 (945)
+.... . + .+.+.+..++.... ...+.-++..|++.++..++.++....+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDG 305 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 22211 0 1 35667776666543 2245567789999999998888855444
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=125.13 Aligned_cols=126 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
++++++++.++.+|..+. ++|+.|+|++|. +..+|..+.++++|++|+|++|...+..|..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 455666666666665543 466666666665 44566566666666666666655444333334444444444444443
Q ss_pred CccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCc
Q 041079 653 SSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 653 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 730 (945)
+..++. ..+.++++|+.|+|++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 90 l~~i~~-----------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPP-----------------------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCT-----------------------------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCH-----------------------------HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 333321 123345555555555555555554 3555666666666666554
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.7e-12 Score=125.10 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=60.5
Q ss_pred cccceeeecCCCCC-CCCC-CccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEec
Q 041079 547 KELVILNLRGCKGL-KKLP-EISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNL 624 (945)
Q Consensus 547 ~~L~~L~L~~~~~l-~~lp-~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 624 (945)
++|+.|++++|... +.+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..+.++++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34555555555433 2344 234455555555555555554 44555555555555555533334444444555555555
Q ss_pred cCCCCCCc-cCCccCCcccCccccccCCCCccCCc----cccCCCCCcEEEc
Q 041079 625 CRCSNLRR-FPEEIGNVEASNSLYAYGTASSEVPS----SIVRSNNFRFLSF 671 (945)
Q Consensus 625 s~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~l 671 (945)
++|...+. .|..++.+++|++|++++|.+..+|. .+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55543321 22444555555555555555444443 3444444444443
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.4e-11 Score=124.10 Aligned_cols=126 Identities=23% Similarity=0.280 Sum_probs=81.7
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcc--cCCCCCCCEEeccCCCCCCccCCccCCcccCccccccC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCS--LFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYG 650 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 650 (945)
++|+++++.++.+|..+.. +|+.|++++|. +..++.. +.++++|++|+|++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5666666666666665543 66777777765 4444432 56667777777777666555566666666666666665
Q ss_pred CCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc-CcccCCCCCCCEEECCCCCC
Q 041079 651 TASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL-PESLGRLSLLEELDLRRNNF 729 (945)
Q Consensus 651 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l 729 (945)
|.+..++. ..+.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+
T Consensus 88 N~l~~~~~-----------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISN-----------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECS-----------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCH-----------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 55544432 2244566777777777777754 66778888888888888887
Q ss_pred c
Q 041079 730 E 730 (945)
Q Consensus 730 ~ 730 (945)
.
T Consensus 139 ~ 139 (192)
T 1w8a_A 139 N 139 (192)
T ss_dssp C
T ss_pred c
Confidence 6
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=4.3e-12 Score=126.05 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=80.1
Q ss_pred ccCCccccEEeccccccccccCcccCCCC-CCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCc
Q 041079 589 VGCLSGLVLLHLQACKMLKSLPCSLFKLK-SLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFR 667 (945)
Q Consensus 589 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~ 667 (945)
+..+.+|+.|++++|. +..+|. +..+. +|++|++++|...+ + ..++.+++|++|++++|.+..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL------- 83 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH-------
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcch-------
Confidence 4455666666666665 344543 33333 66666666654332 2 33444444444444444444333221
Q ss_pred EEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc--ccCCCCCCCEEECCCCCCcccchh----hhCCCC
Q 041079 668 FLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE--SLGRLSLLEELDLRRNNFERVPES----IIQLSK 741 (945)
Q Consensus 668 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----i~~l~~ 741 (945)
+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.++.+|.. +..+++
T Consensus 84 ----------------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 84 ----------------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 141 (176)
T ss_dssp ----------------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred ----------------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence 2456677777777777777776 677788888888888888877764 778888
Q ss_pred CCEEeeccCC
Q 041079 742 LNYLYLSYCQ 751 (945)
Q Consensus 742 L~~L~L~~c~ 751 (945)
|+.|++++|+
T Consensus 142 L~~Ld~~~n~ 151 (176)
T 1a9n_A 142 VRVLDFQKVK 151 (176)
T ss_dssp CSEETTEECC
T ss_pred cceeCCCcCC
Confidence 8888888775
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=3.5e-12 Score=126.69 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred ccccceeeecCCCCCCCCCCccCCc-ccceEeecCCCCcccCccccCCccccEEeccccccccccCccc-CCCCCCCEEe
Q 041079 546 LKELVILNLRGCKGLKKLPEISSLS-NIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSL-FKLKSLEDLN 623 (945)
Q Consensus 546 l~~L~~L~L~~~~~l~~lp~~~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~ 623 (945)
+.+|+.|+|++|... .+|.+..+. +|++|+|++|.|+.+ ..+..+++|++|+|++|. +..+|..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence 344555555555422 334444433 566666666665555 345555666666666555 33444333 4555666666
Q ss_pred ccCCCCCCccCC--ccCCcccCccccccCCCCccCCcc----ccCCCCCcEEEcccCC
Q 041079 624 LCRCSNLRRFPE--EIGNVEASNSLYAYGTASSEVPSS----IVRSNNFRFLSFRESR 675 (945)
Q Consensus 624 Ls~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~lp~~----l~~l~~L~~L~l~~~~ 675 (945)
+++|.. +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 655543 34444 455555555555555555555543 4445555555554443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=6.7e-11 Score=117.45 Aligned_cols=55 Identities=25% Similarity=0.345 Sum_probs=30.6
Q ss_pred cceEeecCCCCcccCccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCC
Q 041079 572 IEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 572 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~ 629 (945)
.+.++++++.++.+|..+. ++|+.|++++|.. ..+| ..+.++++|++|++++|..
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcc
Confidence 3556666666666665442 5666666666653 3333 2345566666666666543
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.8e-11 Score=120.26 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=97.5
Q ss_pred ceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCC
Q 041079 550 VILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSN 629 (945)
Q Consensus 550 ~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~ 629 (945)
++++++++. +..+|.- -.++|++|+|++|.|+.+|..+..+++|++|+|++|......|..+.++++|++|+|++|..
T Consensus 13 ~~l~~~~~~-l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSC-CSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCC-CCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456776665 4455531 13688999999999999998899999999999999885544456688899999999999887
Q ss_pred CCccCCccCCcccCccccccCCCCccCCcc-ccCCCCCcEEEcccCC
Q 041079 630 LRRFPEEIGNVEASNSLYAYGTASSEVPSS-IVRSNNFRFLSFRESR 675 (945)
Q Consensus 630 ~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~ 675 (945)
....|..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 776677889999999999999998888773 6667777777777765
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.8e-11 Score=120.97 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=75.4
Q ss_pred ceeeecCCCCCCCCCC-ccCCcccceEeecCCCCcccCcc--ccCCccccEEeccccccccccCcccCCCCCCCEEeccC
Q 041079 550 VILNLRGCKGLKKLPE-ISSLSNIEKIILSGTAIEELPSS--VGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCR 626 (945)
Q Consensus 550 ~~L~L~~~~~l~~lp~-~~~l~~L~~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 626 (945)
++|+++++.. +.+|. +. .+|++|+|++|.|+.++.. ++.+++|++|+|++|...+..|..+.++++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4455555542 34442 22 2666667777766666553 66677777777777664444466666777777777777
Q ss_pred CCCCCccCCccCCcccCccccccCCCCccC-CccccCCCCCcEEEcccCC
Q 041079 627 CSNLRRFPEEIGNVEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESR 675 (945)
Q Consensus 627 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 675 (945)
|...+..|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 666555555566677777777777666544 4455556666666666655
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=3.6e-10 Score=127.34 Aligned_cols=296 Identities=15% Similarity=0.147 Sum_probs=173.7
Q ss_pred CCCCccchHHHHHHHHhhhcc------cC--EEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhhccCCHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA------AP--LLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVREESQRSGGLAC 207 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~------~~--~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~l~~ 207 (945)
.++.++||+.+++++...+.. .. .+.|+|++|+||||||+.+++...... ...+++. . ... .....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~~~-~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---FIY-RNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---TTC-CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---ccC-CCHHH
Confidence 347799999999999988865 24 899999999999999999999876543 2334443 2 112 44556
Q ss_pred HHHHHHHHHhCCCCcc-CC----HHHHHHHHc--CCCcEEEEecCCCh--HHHHHHhcCCCCCC----CCCeEEEEecCc
Q 041079 208 LRQELLSKLLKHENVI-LD----IDLNFRRLS--RMKVLIVFDDVTCF--RQIKSLIRSPDWFM----ADSRIIITTRNK 274 (945)
Q Consensus 208 l~~~ll~~l~~~~~~~-~~----~~~l~~~L~--~kr~LlVLDdv~~~--~~l~~l~~~~~~~~----~gs~IIiTTR~~ 274 (945)
+...++..+....... .. ...+.+.+. +++.+||||+++.. ..+..+........ .+..||+||++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 6777777664332211 12 233333443 56889999999764 44555544433211 366788888876
Q ss_pred cccccCC-------cceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHh---------cCCcchHHHhhcc
Q 041079 275 QVLRNCS-------VKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYA---------QGVPLALEILGCS 338 (945)
Q Consensus 275 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~---------~GlPLal~~lg~~ 338 (945)
.+..... ....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4322221 12379999999999999998876321111112245677888888 7887544333221
Q ss_pred c-c-----C---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccC---CC--CChHHHHHH----h
Q 041079 339 L-F-----E---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFF---KG--EDVYPVMKF----L 400 (945)
Q Consensus 339 L-~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~----~ 400 (945)
. . + .+.+....+.... ... .+.-.+..|++.++.++..++.+. .+ .....+.+. .
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~---~~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEV---LFG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHH---SCC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH---hhh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 1 0 1 2333333333322 222 223335668888888888888654 22 223333222 2
Q ss_pred hhcCCCc------ccchHHHHhcccceec-C-------CEE-------ehhHHHHHHHHHHHhhc
Q 041079 401 DASGFYP------TTGISVLVDKSLIAIS-Y-------NKI-------MMHDLLQELGREIVRQE 444 (945)
Q Consensus 401 ~~~g~~~------~~~i~~L~~~sLi~~~-~-------~~~-------~mHdli~~~~~~i~~~e 444 (945)
...|..+ ...+..|.++++|... . +++ ..|++++.+...+..+|
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2233222 1347889999999874 1 221 24566666665555443
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=9.7e-11 Score=116.28 Aligned_cols=130 Identities=22% Similarity=0.239 Sum_probs=79.7
Q ss_pred ccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccC
Q 041079 595 LVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRES 674 (945)
Q Consensus 595 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 674 (945)
.+.++++++. +..+|..+ .++|++|++++|...+..+..++.+++|++|++++|.+..+|..
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--------------- 70 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh---------------
Confidence 4566666655 56666543 35777777777665443333455566666666666555544432
Q ss_pred CCCccCccccccccccCCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCCCCCcccchh-hhCCCCCCEEeeccCCC
Q 041079 675 RGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRRNNFERVPES-IIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 675 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 752 (945)
.+..+++|+.|++++|.++.+|.. +..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+.
T Consensus 71 --------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 71 --------------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp --------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --------------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 234566666666666666665543 56677777777777777766654 35677777777777765
Q ss_pred Cccc
Q 041079 753 LQSL 756 (945)
Q Consensus 753 l~~l 756 (945)
....
T Consensus 137 ~~~~ 140 (177)
T 2o6r_A 137 DCSC 140 (177)
T ss_dssp CCCH
T ss_pred eccC
Confidence 4433
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.6e-10 Score=120.84 Aligned_cols=181 Identities=15% Similarity=0.102 Sum_probs=116.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccce---------------------EEE
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGS---------------------CFL 192 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~---------------------~~~ 192 (945)
..+.++||+..++.+...+.. .+.+.|+|++|+||||+|+++++.+...+... ..+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 456799999999999999876 35899999999999999999998775433211 111
Q ss_pred EechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEE
Q 041079 193 ENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIIT 270 (945)
Q Consensus 193 ~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiT 270 (945)
. .. . .........++..+... ...+++.+||+||++. ...++.+...+.....+.++|+|
T Consensus 101 ~-~~----~-~~~~~~~~~~~~~~~~~------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 162 (250)
T 1njg_A 101 D-AA----S-RTKVEDTRDLLDNVQYA------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 162 (250)
T ss_dssp E-TT----C-GGGHHHHHHHHHSCCCS------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred c-Cc----c-cccHHHHHHHHHHhhhc------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE
Confidence 0 00 0 00001111111111000 0134679999999965 44555555444433567888998
Q ss_pred ecCcccccc--CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhc
Q 041079 271 TRNKQVLRN--CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGC 337 (945)
Q Consensus 271 TR~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 337 (945)
|+....... ......+++++++.+|..+++...+....... ..+....++++++|+|..+..+..
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 876542211 12236899999999999999998775433221 235678899999999998876654
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=2.2e-13 Score=138.31 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=66.3
Q ss_pred cCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCC
Q 041079 613 LFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDG 692 (945)
Q Consensus 613 i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 692 (945)
+.++++|++|++++|...+ +| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.... +| .+..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-------l~-~~~~ 113 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-------LS-GIEK 113 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-------HH-HHHH
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-------CC-cccc
Confidence 3334444444444433221 33 3333444444444444444444444444455555555554211 11 2345
Q ss_pred CCCCCEEeccCCCCCccCc--ccCCCCCCCEEECCCCCCcccch-----------hhhCCCCCCEEe
Q 041079 693 LHSLKSLCLHNCGVTRLPE--SLGRLSLLEELDLRRNNFERVPE-----------SIIQLSKLNYLY 746 (945)
Q Consensus 693 l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~-----------~i~~l~~L~~L~ 746 (945)
+++|+.|++++|.+..++. .+..+++|++|++++|.+...+. .+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6677777777777776553 67777888888888887764422 266777888776
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=3.2e-11 Score=132.76 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=52.1
Q ss_pred CcCccccccccccCC--CCCccccccCcceeEEEecCCcCCccCCCCCCCcc--------ccccceeeecCCCCCCCCC-
Q 041079 496 MPKLRFLKFYRSSIN--GENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPY--------LKELVILNLRGCKGLKKLP- 564 (945)
Q Consensus 496 ~~~Lr~L~l~~~~l~--~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~--------l~~L~~L~L~~~~~l~~lp- 564 (945)
+++|+.|++++|.+. .... ..++.++.+.+..+ .++ ...+.+ +.+|+.|+|.+ .+..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~-~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVP-AYAFSNVVNGVTKGKQTLEKVILSE--KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EEC-TTTTEEEETTEEEECTTCCC-CBCT--TCCEECT
T ss_pred hccCeEEecCcceeEEecCcc---cccccccccccccc----ccC-HHHhcccccccccccCCCcEEECCc--cccchhH
Confidence 566777777777665 1111 12222333444333 122 234555 67777777766 344454
Q ss_pred -CccCCcccceEeecCCCCcccCc-cccCCccccEEeccc
Q 041079 565 -EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQA 602 (945)
Q Consensus 565 -~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~ 602 (945)
.+.+|++|+.|++++|.+..+++ .+..+.++..+.+..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 45567777777777777765544 355555555555443
No 151
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.10 E-value=6.9e-12 Score=119.81 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=57.3
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHH-HHhhcCCEEEeEeee-ecCCcc
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILE-FKREYAQIVIPVFYR-VDPSDL 65 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~-~~~~~~~~v~Pvfy~-v~ps~v 65 (945)
+.+|+.|.+++.+||++|+++|+|||++|++|.||+.||..++. +.+++++.||||||+ +++.++
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 46899999999999999999999999999999999999999985 556677889999997 555444
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.6e-12 Score=131.85 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=84.7
Q ss_pred hccCcCccccccccccCCCCCcc------ccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCCC-
Q 041079 493 FTKMPKLRFLKFYRSSINGENKC------KQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLPE- 565 (945)
Q Consensus 493 f~~~~~Lr~L~l~~~~l~~~~~~------~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~- 565 (945)
+....++..+++..+.+.+..+. .+..+++|++|++++|. +..++ .+.++++|++|+|++|... .+|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~---~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS---SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC---CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc---ccccCCCCCEEECCCCCcc-cccch
Confidence 55666777777777777765554 56677777777777664 23332 5566667777777776543 4453
Q ss_pred ccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCc--ccCCCCCCCEEeccCCCCCCccC
Q 041079 566 ISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPC--SLFKLKSLEDLNLCRCSNLRRFP 634 (945)
Q Consensus 566 ~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~~~~lp 634 (945)
+..+++|++|+|++|.++.+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|...+..|
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 233567777777777777666 46666777777777765 444332 45666777777777665444333
No 153
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.06 E-value=2.3e-11 Score=119.28 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=50.9
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHHHH-HhhcCCEEEeEeeee
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYASSRWCLDELVKILEF-KREYAQIVIPVFYRV 60 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~~~-~~~~~~~v~Pvfy~v 60 (945)
+.+|+.|.+++.+||++|+++|+|||++|++|.||+.||..++.+ .+++++.||||||+-
T Consensus 74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp CCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSC
T ss_pred CCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 468999999999999999999999999999999999999999964 456678899999984
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=2.3e-09 Score=110.21 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=114.6
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
....++|++..++++..++.. .+.+.|+|++|+|||++|+.+++.+... +.......+.. .. .+...+...+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~- 89 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---DE-RGIDVVRHKI- 89 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---CT-TCHHHHHHHH-
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---cc-cChHHHHHHH-
Confidence 456799999999999999877 3459999999999999999999976443 33222221211 11 2322222222
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCccccc-c-CCcceEEEcC
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQVLR-N-CSVKEIYEMK 289 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~-~-~~~~~~~~l~ 289 (945)
........ ....++.+||+||++.. ...+.+...+.....+.++|+||+...... . ......++++
T Consensus 90 ~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 90 KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 11111100 01257889999999764 334444433333346778999988654211 1 1123489999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 290 ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 290 ~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
+++.++..+++...+...... -..+....+++.++|.|..+..
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999998877432222 1235677888999999986543
No 155
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.04 E-value=9.8e-11 Score=112.83 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCCCCCcHHHHHHHHhccEEEEEecCCcc-chhhhHHHHHHHHHHH-hhcCCEEEeEeeeecCC
Q 041079 1 INRGDEIPESLVNAIEASAISVIIFSERYA-SSRWCLDELVKILEFK-REYAQIVIPVFYRVDPS 63 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~~s~~~v~v~S~~y~-~S~wcl~El~~i~~~~-~~~~~~v~Pvfy~v~ps 63 (945)
+.+|+.|.+++.+||++||.+|||+|++|+ +|.||+.|+..++.|. +++++.||||||.-.|.
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 468999999999999999999999999996 9999999999999987 66788999999986554
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.9e-10 Score=125.07 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=124.6
Q ss_pred cCcceeEEEecCCcCCccCCCCCCCcc-ccccceeeecCCCCCCCCCCccCCcccceEeecCCCCcccCccccC------
Q 041079 519 HHGKLKQIIISAGNFFTKTPKPSFIPY-LKELVILNLRGCKGLKKLPEISSLSNIEKIILSGTAIEELPSSVGC------ 591 (945)
Q Consensus 519 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~-l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~Ls~~~i~~lp~~i~~------ 591 (945)
.+.+++.|.++++-... +...+.. +++|++|||++|.....-.....++.++.+.+..+.|. +..+..
T Consensus 23 ~~~~l~~L~l~g~i~~~---~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAE---DFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEEECHH---HHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred hhCceeEEEEeccccHH---HHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccc
Confidence 36678888887642111 1122233 66788889988875411101112333455555555332 123445
Q ss_pred --CccccEEeccccccccccCc-ccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC----CccCC-ccccCC
Q 041079 592 --LSGLVLLHLQACKMLKSLPC-SLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA----SSEVP-SSIVRS 663 (945)
Q Consensus 592 --L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~----~~~lp-~~l~~l 663 (945)
+++|+.|+|.+ . +..++. .+.+|++|+.|++++|.....-+..+..+.++..+....+. ...+. ..+..+
T Consensus 98 ~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77888888877 3 555553 46677888888887766554444556665555555544311 11111 122233
Q ss_pred CCCc-EEEcccCCCCccCcc-------------------ccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEE
Q 041079 664 NNFR-FLSFRESRGDKQMGL-------------------SLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEEL 722 (945)
Q Consensus 664 ~~L~-~L~l~~~~~~~~~~~-------------------~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L 722 (945)
.+|+ .+.+.....+..... ..........+++|+.|+|++|++..+|. .+..+++|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3333 222221111000000 00000000125677777777777777765 56777777777
Q ss_pred ECCCCCCcccch-hhhCCCCCC-EEeeccCCCCcccCCc----ccccceEee
Q 041079 723 DLRRNNFERVPE-SIIQLSKLN-YLYLSYCQRLQSLPEL----PCNLILLYA 768 (945)
Q Consensus 723 ~Ls~n~l~~lp~-~i~~l~~L~-~L~L~~c~~l~~lp~l----~~~L~~L~~ 768 (945)
+|.+| ++.++. .+.++++|+ .|++.+ .+..++.- .++|+.|++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 77776 666663 566777777 777776 34555432 245666655
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=9e-10 Score=108.84 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCCCCCcccch
Q 041079 691 DGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRRNNFERVPE 734 (945)
Q Consensus 691 ~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~ 734 (945)
.++++|+.|+|++|.+..+|.. +..+++|+.|+|++|.+...+.
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 3455666666666666666654 6667777777777777665543
No 158
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.02 E-value=2.4e-11 Score=117.25 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCCCCCcHHHHHHHH-hccEEEEEecCCccchhhhHHHHHHHHHHH-hhcCCEEEeEeeeecC
Q 041079 1 INRGDEIPESLVNAIE-ASAISVIIFSERYASSRWCLDELVKILEFK-REYAQIVIPVFYRVDP 62 (945)
Q Consensus 1 ~~~g~~~~~~l~~ai~-~s~~~v~v~S~~y~~S~wcl~El~~i~~~~-~~~~~~v~Pvfy~v~p 62 (945)
+.+|+.|.+++.+||+ +|+++|+|+|++|++|.||+.|+..++++. +++++.||||||+.-+
T Consensus 54 ~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 54 VLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp SSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred CCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 4689999999999999 699999999999999999999999999986 4456789999999643
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=2.6e-09 Score=105.14 Aligned_cols=65 Identities=28% Similarity=0.385 Sum_probs=42.2
Q ss_pred ccCCCCCCCEEeccCCCCCccCcc-cCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCCC
Q 041079 689 SSDGLHSLKSLCLHNCGVTRLPES-LGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 689 ~l~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~l 753 (945)
.+.++++|+.|+|++|++..+|.. +..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 345566666666666666666553 4666777777777777776664 3666777777777776543
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=2.3e-09 Score=105.42 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=55.3
Q ss_pred cceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCC
Q 041079 572 IEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGT 651 (945)
Q Consensus 572 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~ 651 (945)
.+.|+++++.++.+|..+. ++|++|+|++|...+..|..+.++++|++|+|++|...+..|..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455666666666665542 56666666666533333455566666666666665544333333455666666666666
Q ss_pred CCccCCcc-ccCCCCCcEEEcccCC
Q 041079 652 ASSEVPSS-IVRSNNFRFLSFRESR 675 (945)
Q Consensus 652 ~~~~lp~~-l~~l~~L~~L~l~~~~ 675 (945)
.+..+|.. +..+++|+.|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 65555542 4444444444444443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.8e-08 Score=111.89 Aligned_cols=240 Identities=12% Similarity=0.134 Sum_probs=162.8
Q ss_pred cCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--CccCCccc
Q 041079 495 KMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EISSLSNI 572 (945)
Q Consensus 495 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L 572 (945)
.+..+..+.+.+ .+.......|.++ +|+.+.+..+ +..+.. ..+.++ +|+.+.|.+ .+..++ .+.++++|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~-~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGD-MAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECT-TTTTTC-CCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECH-HhcCCC-CceEEEeCC--CccEehHHHhhCcccC
Confidence 334455444433 1222223345554 6888887654 444443 234443 688888875 345555 56679999
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccC-cccCCCCCCCEEeccCCCCCCccCCc-cCCcccCccccccC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEE-IGNVEASNSLYAYG 650 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~-l~~l~~L~~L~l~~ 650 (945)
+.++|++|.++.+|...-...+|+.+.|..+ +..++ ..+.++++|+.+++..+ +..++.. +.+ .+|+.+.+.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-
Confidence 9999999999988887555789999999854 56655 45678899999999763 4555544 444 678888884
Q ss_pred CCCccCC-ccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC-cccCCCCCCCEEECCCCC
Q 041079 651 TASSEVP-SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP-ESLGRLSLLEELDLRRNN 728 (945)
Q Consensus 651 ~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~ 728 (945)
+.+..++ ..+.++++|+.+.+.++.... .+.....+..+.++++|+.+.|.+ ++..++ ..+.++++|+.|.|..|
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFND-DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCC-CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccC-CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 4455564 467889999999998775321 111123345678899999999984 577765 46788899999999654
Q ss_pred Ccccc-hhhhCCCCCCEEeeccCCC
Q 041079 729 FERVP-ESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 729 l~~lp-~~i~~l~~L~~L~L~~c~~ 752 (945)
++.++ ..+.++ +|+.|++++|..
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 77776 467778 999999998853
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.5e-09 Score=105.66 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=46.3
Q ss_pred ceEeecCCCCcccCccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCC
Q 041079 573 EKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTA 652 (945)
Q Consensus 573 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~ 652 (945)
+.++++++.++.+|..+. ++|+.|+|++|...+..|..+.++++|++|+|++|...+..+..+.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344555555555555443 455555555555333334445555555555555544332222223445555555555555
Q ss_pred CccCCcc-ccCCCCCcEEEcccC
Q 041079 653 SSEVPSS-IVRSNNFRFLSFRES 674 (945)
Q Consensus 653 ~~~lp~~-l~~l~~L~~L~l~~~ 674 (945)
+..+|.. +..+++|+.|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 5444432 333444444444433
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.8e-08 Score=111.81 Aligned_cols=244 Identities=13% Similarity=0.181 Sum_probs=172.6
Q ss_pred eccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC-
Q 041079 486 MHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP- 564 (945)
Q Consensus 486 ~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp- 564 (945)
..+...+|..+ +|+.+.+..+ +.......|.++ +|+.+.+.. .+..+. ...+.+|.+|+.++|.+|. +..++
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~n~-l~~I~~ 197 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSKTK-ITKLPA 197 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTTSC-CSEECT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEeh-HHHhhCcccCCeeecCCCc-ceEech
Confidence 34667788886 7888888654 444344456663 699999875 344433 3567888999999998875 44455
Q ss_pred CccCCcccceEeecCCCCcccCc-cccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCcc-CCccCCccc
Q 041079 565 EISSLSNIEKIILSGTAIEELPS-SVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRF-PEEIGNVEA 642 (945)
Q Consensus 565 ~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~ 642 (945)
......+|+.+.|..+ ++.++. .+..+++|+.+++..+ +..++.....-.+|+.+.+.+ + +..+ +..+.++.+
T Consensus 198 ~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~-~-i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN-G-VTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET-T-CCEECTTTTTTCTT
T ss_pred hhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC-C-ccEEChhHhhCCCC
Confidence 3444789999999854 777655 4788999999999874 566665444447899999954 2 4445 456888999
Q ss_pred CccccccCCCCc-----cCC-ccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC-cccCC
Q 041079 643 SNSLYAYGTASS-----EVP-SSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP-ESLGR 715 (945)
Q Consensus 643 L~~L~l~~~~~~-----~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~ 715 (945)
|+.+.+.++.+. .++ ..+..+++|+.+.+..+ +. ..-...+.++++|+.+.|..+ +..++ .++.+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~-----~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IR-----ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CC-----EECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eE-----EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 999999887654 344 46788999999999743 22 223445788999999999654 67664 47788
Q ss_pred CCCCCEEECCCCCCcccch-hhhCCC-CCCEEeeccC
Q 041079 716 LSLLEELDLRRNNFERVPE-SIIQLS-KLNYLYLSYC 750 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~~lp~-~i~~l~-~L~~L~L~~c 750 (945)
+ +|+.|++++|.+..++. .+..++ +++.|.+..+
T Consensus 345 ~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 8 99999999998877663 344453 5666666543
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.1e-08 Score=112.02 Aligned_cols=182 Identities=16% Similarity=0.239 Sum_probs=113.5
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccc-eEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD-FEG-SCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
..+.++|++..++.+.+++.. .+.+.|+|++|+||||+|+.+++.+... +.. .+.+. . +.. .+...+. .+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~-~~~~~i~-~~ 92 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDD-RGIDVVR-NQ 92 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSC-CSHHHHH-TH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccc-cChHHHH-HH
Confidence 456799999999999999876 3449999999999999999999986432 222 22222 1 111 2322222 22
Q ss_pred HHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCccc-ccc-CCcceEEE
Q 041079 213 LSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQV-LRN-CSVKEIYE 287 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~~~-~~~~~~~~ 287 (945)
+..+.... ..+ .+++.++|+||++.. ...+.+...+....+++++|+||+...- ... ......++
T Consensus 93 ~~~~~~~~----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 93 IKHFAQKK----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHHHHBC----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHhcc----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 22221000 011 346889999999763 3344444333333467788888876432 111 12235899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch-HHHhh
Q 041079 288 MKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA-LEILG 336 (945)
Q Consensus 288 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa-l~~lg 336 (945)
+.+++.++..+++...+......- ..+....+++.++|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999988764322211 135677899999999954 44443
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.76 E-value=2.3e-07 Score=101.48 Aligned_cols=244 Identities=15% Similarity=0.122 Sum_probs=141.6
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
..++++|++..++++...+.. ...|.|+|++|+|||++|+++++.....| .++ +.... .....+.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~----~~~~~l~ 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAI----EKPGDLA 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTC----CSHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ecccc----CChHHHH
Confidence 557899999999999888753 46899999999999999999999774332 222 11111 1111111
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCC------------------CCCCeEEE
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWF------------------MADSRIII 269 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~------------------~~gs~IIi 269 (945)
..+.. . ..++.+|+||+++... ..+.+...+... .++.++|.
T Consensus 82 ----~~l~~-------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 ----AILAN-------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----HHHTT-------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----HHHHH-------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 11110 0 1356799999997642 233332111110 12456777
Q ss_pred EecCccccc-cC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhcccc------
Q 041079 270 TTRNKQVLR-NC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSLF------ 340 (945)
Q Consensus 270 TTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~------ 340 (945)
||....... .. ....++.+.+++.+|..+++...+...... -..+....++++++|.|..+..+...+.
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 221 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 221 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTT
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 766443221 11 123589999999999999998877443222 1246678899999999987765543321
Q ss_pred C---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCC--CChHHHHHHhhhcCCCcc---cchH
Q 041079 341 E---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKG--EDVYPVMKFLDASGFYPT---TGIS 412 (945)
Q Consensus 341 ~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~~---~~i~ 412 (945)
+ .+.+....++.. +...+..+++.++..+..++....+ .....+.+.+ |.... ..++
T Consensus 222 ~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~ 286 (324)
T 1hqc_A 222 GEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHE 286 (324)
T ss_dssp SCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTH
T ss_pred cCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHh
Confidence 1 233444333332 2234567788888888776654333 2344444433 32221 1122
Q ss_pred H-HHhcccceec
Q 041079 413 V-LVDKSLIAIS 423 (945)
Q Consensus 413 ~-L~~~sLi~~~ 423 (945)
. +++.++|...
T Consensus 287 ~~~i~~~li~~~ 298 (324)
T 1hqc_A 287 PYLIRQGLLKRT 298 (324)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHHhcchhcC
Confidence 2 6677777655
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=3.9e-10 Score=125.73 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=19.2
Q ss_pred CCCCCCEEeccCCCCCc-----cCcccCCCCCCCEEECCCCCCc
Q 041079 692 GLHSLKSLCLHNCGVTR-----LPESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 730 (945)
..++|+.|+|++|.++. ++..+...++|++|+|++|.|+
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 34455555555555542 2333334455555555555554
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=6.3e-08 Score=106.03 Aligned_cols=180 Identities=19% Similarity=0.223 Sum_probs=111.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc-cc-eEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF-EG-SCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
..++++|++..++.+..++.. .+.+.|+|++|+||||+|+.+++.+.... .. ...+. .... .+...+.. .
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~----~~~~~~~~-~ 96 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDE----RGINVIRE-K 96 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCH----HHHHTTHH-H
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-cccc----CchHHHHH-H
Confidence 556799999999999998876 44699999999999999999999864332 11 22221 1110 01111111 1
Q ss_pred HHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcccc-ccC-CcceEEEc
Q 041079 213 LSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQVL-RNC-SVKEIYEM 288 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~~~~~~l 288 (945)
+........ ...+++.++|+|+++.. +..+.+...+.....+.++|+||....-. ... .....+++
T Consensus 97 ~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 97 VKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred HHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 111100000 01256889999999764 44555554443345678889888765321 111 11247899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 289 KELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 289 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
.+++.++..+++...+...... -..+....+++.++|.|..+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999998876433221 1235677888999999986543
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=6.2e-10 Score=124.12 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=95.2
Q ss_pred CcccceEeecCCCCccc-----Ccccc-CCccccEEeccccccccccCccc-CCCCCCCEEeccCCCCCCccCCccCCcc
Q 041079 569 LSNIEKIILSGTAIEEL-----PSSVG-CLSGLVLLHLQACKMLKSLPCSL-FKLKSLEDLNLCRCSNLRRFPEEIGNVE 641 (945)
Q Consensus 569 l~~L~~L~Ls~~~i~~l-----p~~i~-~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~~~~~~~lp~~l~~l~ 641 (945)
+++|++|+|++|.|+.. ...+. ..++|+.|+|++|.....-...+ ..+++|++|+|++|.....-..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~------ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK------ 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH------
Confidence 45677777777776532 11122 12456666666665322111111 1234455555555533211111
Q ss_pred cCccccccCCCCccCCccc-cCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc-----cCcccCC
Q 041079 642 ASNSLYAYGTASSEVPSSI-VRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR-----LPESLGR 715 (945)
Q Consensus 642 ~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----lp~~l~~ 715 (945)
.+...+ ...++|+.|++++|.... .+ ...++..+..+++|++|+|++|.+++ ++..+..
T Consensus 145 -------------~L~~~L~~~~~~L~~L~Ls~n~l~~-~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 145 -------------DLRDLLLHDQCQITTLRLSNNPLTA-AG-VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp -------------HHHHHHHSTTCCCCEEECCSSCCHH-HH-HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred -------------HHHHHHHhcCCccceeeCCCCCCCh-HH-HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 111112 235677778887776311 10 11233334567889999999998873 4667777
Q ss_pred CCCCCEEECCCCCCc-----ccchhhhCCCCCCEEeeccCCCC
Q 041079 716 LSLLEELDLRRNNFE-----RVPESIIQLSKLNYLYLSYCQRL 753 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l 753 (945)
+++|++|+|++|.++ .++..+...++|+.|+|++|...
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 889999999999987 34556677899999999999743
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4e-08 Score=108.75 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=50.8
Q ss_pred ccCCccCCcccCccccccC-CCCccCCc-cccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCcc
Q 041079 632 RFPEEIGNVEASNSLYAYG-TASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRL 709 (945)
Q Consensus 632 ~lp~~l~~l~~L~~L~l~~-~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l 709 (945)
.+|. ++.+.+|+.|+|++ |.+..+|. .+..+++|+.|+|++|.. ....|..+.++++|+.|+|++|++..+
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l------~~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL------RFVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC------CEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc------ceeCHHHhcCCcCCCEEeCCCCcccee
Confidence 3444 44444444444443 44444442 344555555555555542 122233456677777777777777777
Q ss_pred CcccCCCCCCCEEECCCCCCc
Q 041079 710 PESLGRLSLLEELDLRRNNFE 730 (945)
Q Consensus 710 p~~l~~l~~L~~L~Ls~n~l~ 730 (945)
|..+.....|+.|+|++|.+.
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCC
T ss_pred CHHHcccCCceEEEeeCCCcc
Confidence 765443334888888888776
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=5.3e-08 Score=107.70 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=58.4
Q ss_pred EeecCC-CCcccCccccCCccccEEeccc-cccccccC-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCC
Q 041079 575 IILSGT-AIEELPSSVGCLSGLVLLHLQA-CKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGT 651 (945)
Q Consensus 575 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~-~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~ 651 (945)
++++++ .++.+|. +..+++|+.|+|++ |. +..+| ..+.+|++|++|+|++|...+..|..+.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5666666 66666666666664 44 44444 44666666666666666555555555666666666666666
Q ss_pred CCccCCccccCCCCCcEEEcccCC
Q 041079 652 ASSEVPSSIVRSNNFRFLSFRESR 675 (945)
Q Consensus 652 ~~~~lp~~l~~l~~L~~L~l~~~~ 675 (945)
.+..+|..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 666666544333336666666555
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.5e-06 Score=97.80 Aligned_cols=253 Identities=15% Similarity=0.136 Sum_probs=120.2
Q ss_pred eeccCchhhccCcCccccccccccCCCCCccccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecC--------
Q 041079 485 EMHLNSDTFTKMPKLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRG-------- 556 (945)
Q Consensus 485 ~~~l~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~-------- 556 (945)
...+...+|.++.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++.+. ...+.++..|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~-~~aF~~c~~L~~i~~p~~l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIG-RCTFSGCYALKSILLPLMLKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEcc-chhhcccccchhhcccCceeeecce
Confidence 44567778888888888877532 33333456777788888877543 22221 12334444444433321
Q ss_pred ----CCC--------CCCCC--CccCCcccceEeecCCCCcccC-ccccCCccccEEeccccccccccC-cccCCCCCCC
Q 041079 557 ----CKG--------LKKLP--EISSLSNIEKIILSGTAIEELP-SSVGCLSGLVLLHLQACKMLKSLP-CSLFKLKSLE 620 (945)
Q Consensus 557 ----~~~--------l~~lp--~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~ 620 (945)
|.. ...+. .+.++++|+.+.+..+. ..++ ..+..+.+|+.+++..+ +..++ ..+.++..|+
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCC
T ss_pred eeecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccc
Confidence 111 11111 34557788888886543 3333 34666777777777653 33333 2344556666
Q ss_pred EEeccCCCCCCccCCccCCcccCccccccCCCCccC-CccccCCCCCcEEEcccCCCC------------ccC--ccccc
Q 041079 621 DLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEV-PSSIVRSNNFRFLSFRESRGD------------KQM--GLSLL 685 (945)
Q Consensus 621 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~------------~~~--~~~~~ 685 (945)
.+.+..+. ..+........+|+.+.+..+. ..+ ...+..+.+|+.+.+..+... ... +....
T Consensus 212 ~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 212 NMEFPNSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp BCCCCTTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred eeecCCCc--eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence 65554321 1112222222333333332211 111 112233333443333222100 000 00000
Q ss_pred cccccCCCCCCCEEeccCCCCCccC-cccCCCCCCCEEECCCCCCcccc-hhhhCCCCCCEEeecc
Q 041079 686 ISLSSDGLHSLKSLCLHNCGVTRLP-ESLGRLSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLSY 749 (945)
Q Consensus 686 ~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~ 749 (945)
....+.++.+|+.+.+.++ +..++ .++.++++|+.++|..+ ++.++ ..+.+|++|+.+++..
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 1122445566666666543 44443 34566667777776533 55554 3455666666666643
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=3.6e-07 Score=99.58 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=111.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc-cccc-eEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS-DFEG-SCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
..++++|++..++.+.+.+.. .+.+.++|++|+|||++|+.+++.+.. .+.. .+.+. ....... ..+......+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 92 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGI-DVVRHKIKEF 92 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCT-TTSSHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccCh-HHHHHHHHHH
Confidence 456799999999999999877 345999999999999999999997632 2221 12222 1110000 1111111111
Q ss_pred HHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-cccc-CCcceEEE
Q 041079 213 LSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLRN-CSVKEIYE 287 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~ 287 (945)
.. .. .+ .+++.++|+|+++.. +..+.+...+....++.++|+||.... +... ......++
T Consensus 93 ~~---~~------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 93 AR---TA------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp HH---SC------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred Hh---cC------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 10 00 01 256889999999754 445666666665556778888886553 1111 12235899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHH
Q 041079 288 MKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALE 333 (945)
Q Consensus 288 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 333 (945)
+.+++.++..+++...+...... -..+....+++.++|.+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999998876433221 123556778888999887543
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.58 E-value=7e-07 Score=99.68 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=111.5
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
..++++|++..++.+...+.. .+.+.|+|++|+||||+|+.+++.+....... ... .+...-...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~---------~~~~~~~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP---------CGVCDNCREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC---------CSSSHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC---------CcccHHHHHHh
Confidence 456799999999999998876 45689999999999999999998764322100 000 00000000000
Q ss_pred HH-------HhCCC-CccCCHHHHHHHH-----cCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCccc-c
Q 041079 214 SK-------LLKHE-NVILDIDLNFRRL-----SRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQV-L 277 (945)
Q Consensus 214 ~~-------l~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~ 277 (945)
.. +.... ........+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0111233333333 245789999999653 3445554443333456677777764431 1
Q ss_pred cc-CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 278 RN-CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 278 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
.. ......+++.+++.++..+++...+-..+.. -..+....+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11 1223689999999999999998766332221 113556788999999998765543
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=4.9e-07 Score=90.18 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+.++||+..++++.+.+.. .+.+.|+|++|+|||++|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999876 578899999999999999999997643
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=8.3e-07 Score=103.33 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=105.3
Q ss_pred CCCCccchHHHHHHHHhhhcc-------------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVRE 197 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 197 (945)
..++++|++..++++.+++.. .+.+.|+|++|+||||+|+++++... ++ .+.+ +...
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s~ 112 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NASD 112 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTTS
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCCC
Confidence 456799999999999998865 26899999999999999999999872 21 1222 2211
Q ss_pred hhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHH--HHcCCCcEEEEecCCCh--------HHHHHHhcCCCCCCCCCe
Q 041079 198 ESQRSGGLACLRQELLSKLLKHENVILD-IDLNFR--RLSRMKVLIVFDDVTCF--------RQIKSLIRSPDWFMADSR 266 (945)
Q Consensus 198 ~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~--~L~~kr~LlVLDdv~~~--------~~l~~l~~~~~~~~~gs~ 266 (945)
. ... .+....+........ ... .....+ ...+++.+||+|+++.. ..+..+... .+..
T Consensus 113 ---~-~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~ 181 (516)
T 1sxj_A 113 ---V-RSK-TLLNAGVKNALDNMS-VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTP 181 (516)
T ss_dssp ---C-CCH-HHHHHTGGGGTTBCC-STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSC
T ss_pred ---c-chH-HHHHHHHHHHhcccc-HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCC
Confidence 1 111 122222221111100 000 000000 12357789999999653 233333332 2345
Q ss_pred EEEEecCcc---ccccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc-chHHHh
Q 041079 267 IIITTRNKQ---VLRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP-LALEIL 335 (945)
Q Consensus 267 IIiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~l 335 (945)
||+++.+.. +.........+++++++.++..+++...+......-+ .+....|++.++|.+ -++..+
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 666655432 2222234468999999999999999887654332111 134677888899854 444444
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.47 E-value=2e-06 Score=91.98 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=99.6
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..++++|++..+++|.+.+.. .+.+.|+|++|+|||+||+++++.....|- .+ +..+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v-~~~~~~~~ 90 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RV-VGSELVKK 90 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EE-EGGGGCCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EE-ehHHHHHh
Confidence 557799999999999887632 567999999999999999999998644321 11 12111111
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCC--CCC
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPD--WFM 262 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~--~~~ 262 (945)
..+ ....... .+......++.+|+||+++.. ..+..++.... ...
T Consensus 91 ~~~~~~~~~~~----------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 91 FIGEGASLVKD----------------IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp STTHHHHHHHH----------------HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ccchHHHHHHH----------------HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 011 1111111 112223356789999999653 12333332221 112
Q ss_pred CCCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCCC-CccHHHHHHHHHHHhcCC
Q 041079 263 ADSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNHP-DVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~Gl 328 (945)
.+..||.||.....+. .......+.++..+.++..+++...+...... ..+ ...++..+.|.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 4567777887554322 11234589999999999999998877443322 222 34555666663
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=5.4e-08 Score=107.53 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=42.7
Q ss_pred CCCCCCEEeccCCCCCc-cCccc---CCCCCCCEEECCCCCCcc-----cchhhhCCCCCCEEeeccCCC
Q 041079 692 GLHSLKSLCLHNCGVTR-LPESL---GRLSLLEELDLRRNNFER-----VPESIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~~-lp~~l---~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~~ 752 (945)
.+++|+.|+|++|.+.. .+..+ ..+++|++|+|+.|.+.. ++..+..+++|+.|+|++|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 46788888888887762 11111 346788888888888763 455566778888888888753
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=4.6e-06 Score=92.23 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHH
Q 041079 113 PESELIKEVLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAI 178 (945)
Q Consensus 113 ~e~~~i~~i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v 178 (945)
.+..+++.+..++..+. +....++++|.+..+++|.+.+.. .+.|.|+|++|+|||+||+++
T Consensus 62 ~~~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SCHHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 45566666666554332 222556799999999999887631 678999999999999999999
Q ss_pred HHHhhccccceEEEEechhhhhccCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh---------
Q 041079 179 FDKISSDFEGSCFLENVREESQRSGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--------- 248 (945)
Q Consensus 179 ~~~~~~~F~~~~~~~~~~~~s~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--------- 248 (945)
++.....| +..+..+......+ .....+.+ +...-..++.+|+||+++..
T Consensus 138 a~~~~~~~----~~i~~~~l~~~~~g~~~~~~~~~----------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 138 ASQSGATF----FSISASSLTSKWVGEGEKMVRAL----------------FAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHHTTCEE----EEEEGGGGCCSSTTHHHHHHHHH----------------HHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHHcCCeE----EEEehHHhhccccchHHHHHHHH----------------HHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 98764322 22222221111011 01111111 11122356789999998532
Q ss_pred ----HHHHHHhcCC----CCCCCCCeEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHH
Q 041079 249 ----RQIKSLIRSP----DWFMADSRIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEEL 317 (945)
Q Consensus 249 ----~~l~~l~~~~----~~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l 317 (945)
..+..++..+ .....+..||.||.....+.. -.....+.++..+.++..+++...+-.....- ..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHH
Confidence 1122222211 111234455656654322110 12345788999999999999987764322111 1345
Q ss_pred HHHHHHHhcCC-cchHHHhh
Q 041079 318 SSRVIQYAQGV-PLALEILG 336 (945)
Q Consensus 318 ~~~i~~~~~Gl-PLal~~lg 336 (945)
...+++.+.|. +-.|..+.
T Consensus 276 l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 67788888874 44455444
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=4.8e-08 Score=107.93 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=98.2
Q ss_pred CccccccceeeecCCCCC---------CCCCC-ccCCcccceEeecCCCCcccCccccCCccccEEeccccccccccCcc
Q 041079 543 IPYLKELVILNLRGCKGL---------KKLPE-ISSLSNIEKIILSGTAIEELPSSVGCLSGLVLLHLQACKMLKSLPCS 612 (945)
Q Consensus 543 ~~~l~~L~~L~L~~~~~l---------~~lp~-~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 612 (945)
+.++++|+.|.+.+.... ..++. +..+++|+.|+|+++.-..++. +. +++|+.|+|..|.........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 456677888887654210 01111 2235666666666652123333 22 556666666555422211111
Q ss_pred c--CCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccc--cCCCCCcEEEcccCCCCccCcccccccc
Q 041079 613 L--FKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSI--VRSNNFRFLSFRESRGDKQMGLSLLISL 688 (945)
Q Consensus 613 i--~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 688 (945)
+ ..+++|++|+|+.+... +.. +..+..+...+ ..+++|+.|++.+|........ .+..
T Consensus 213 l~~~~lp~L~~L~L~~~~~~---~~~-------------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la~ 274 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVED---YGF-------------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE--MFLE 274 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGG---GTC-------------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH--HHHH
T ss_pred HHHccCCCCcEEEEeccccc---ccc-------------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH--HHHh
Confidence 2 14566666665422110 000 00011111112 3578999999988774321110 1111
Q ss_pred ccCCCCCCCEEeccCCCCCc-----cCcccCCCCCCCEEECCCCCCcc-cchhhhC-CCCCCEEeeccCC
Q 041079 689 SSDGLHSLKSLCLHNCGVTR-----LPESLGRLSLLEELDLRRNNFER-VPESIIQ-LSKLNYLYLSYCQ 751 (945)
Q Consensus 689 ~l~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-lp~~i~~-l~~L~~L~L~~c~ 751 (945)
...+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.++. .-..+.. + ...+++++++
T Consensus 275 -a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 275 -SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp -CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred -CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 1347899999999999884 55566678999999999998762 2222332 2 4668888765
No 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.9e-06 Score=92.41 Aligned_cols=158 Identities=10% Similarity=0.091 Sum_probs=98.0
Q ss_pred CccchHHHHHHHHhhhcc------cCEEEEEecCCCcHHHHHHHHHHHhhcccc-------ceEEEEechhhhhccCCHH
Q 041079 140 QLVGVESRVVAIQSLLGA------APLLGIWGIGGIGKTIIARAIFDKISSDFE-------GSCFLENVREESQRSGGLA 206 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~s~~~~~l~ 206 (945)
.+.||++++++|...|.. ...+.|+|++|.|||++|+++++++..... ..+++.+. .. .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~-~~----~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL-EL----AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT-CC----C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc-cc----CCHH
Confidence 378999999999988766 678999999999999999999998754321 12334322 11 3445
Q ss_pred HHHHHHHHHHhCCCCccC-CHHHHHHHH------cCCCcEEEEecCCCh---HHHHHHhcCCCCCCCCCe--EEEEecCc
Q 041079 207 CLRQELLSKLLKHENVIL-DIDLNFRRL------SRMKVLIVFDDVTCF---RQIKSLIRSPDWFMADSR--IIITTRNK 274 (945)
Q Consensus 207 ~l~~~ll~~l~~~~~~~~-~~~~l~~~L------~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~--IIiTTR~~ 274 (945)
.+...+..++.+...... ....+.+.+ .++++++|||+++.. +.+-.+..... ..+++ ||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCc
Confidence 677778888765432222 233333332 356799999999875 33333332100 12333 33444433
Q ss_pred ccc---------ccCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 275 QVL---------RNCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 275 ~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
+.. ..++ ...+.+++++.+|-.+++.+++-
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 221 1221 25789999999999999988763
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=6.6e-06 Score=86.67 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++++.+++.. .+.|.|+|++|+|||++|+++++.....| +.+ +........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhc
Confidence 446789999888888765432 45688999999999999999999765332 222 221111110
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-----------------HHHHHHhcCCCCC--CC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-----------------RQIKSLIRSPDWF--MA 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~~--~~ 263 (945)
.+.. ...+ ...+.......+.+|+||+++.. ..+..++...... ..
T Consensus 80 ~~~~---~~~~------------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 80 GGLG---AARV------------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp TTHH---HHHH------------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred cChh---HHHH------------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 1100 0000 11122222346789999999764 1133333222111 23
Q ss_pred CCeEEEEecCcccc-----ccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 264 DSRIIITTRNKQVL-----RNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 264 gs~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
+..||.||.....+ ..-..+..+.++..+.++..+++...+..... ..........+++.+.|.+-
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 45666676554321 11124468889999999999999887643322 22222234667777777653
No 182
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.41 E-value=7.2e-06 Score=88.26 Aligned_cols=194 Identities=20% Similarity=0.171 Sum_probs=109.9
Q ss_pred HHHHHHhhccccCCCCCCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 121 VLNQILKRLAEVFPRDNNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 121 i~~~i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
+++.+.+.+....+....++++|.+..++.+.+.+.. .+.+.|+|++|+||||+|+++++.....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 4555555555444443567899999999999887622 57899999999999999999998764332
Q ss_pred cceEEEEechhhhhcc-CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHH
Q 041079 187 EGSCFLENVREESQRS-GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIK 252 (945)
Q Consensus 187 ~~~~~~~~~~~~s~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~ 252 (945)
+.+ +........ .......+.+ +......++.+|+||+++.. ....
T Consensus 83 ---~~i-~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 142 (297)
T 3b9p_A 83 ---LNI-SAASLTSKYVGDGEKLVRAL----------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKT 142 (297)
T ss_dssp ---EEE-ESTTTSSSSCSCHHHHHHHH----------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHH
T ss_pred ---EEe-eHHHHhhcccchHHHHHHHH----------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHH
Confidence 112 221111110 1111111111 11122356789999998543 1111
Q ss_pred HHhc---CCCC--CCCCCeEEEEecCcccccc-C--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHH
Q 041079 253 SLIR---SPDW--FMADSRIIITTRNKQVLRN-C--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQY 324 (945)
Q Consensus 253 ~l~~---~~~~--~~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~ 324 (945)
.++. .... .+.+..||.||.....+.. . .....+.++..+.++..+++...+-.....-. .+....+++.
T Consensus 143 ~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~ 220 (297)
T 3b9p_A 143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKI 220 (297)
T ss_dssp HHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Confidence 2221 1111 1234456667765432111 0 23457888888999988888877643222111 3456778888
Q ss_pred hcCCcc-hHHHhh
Q 041079 325 AQGVPL-ALEILG 336 (945)
Q Consensus 325 ~~GlPL-al~~lg 336 (945)
+.|.+- ++..+.
T Consensus 221 ~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 221 TDGYSGSDLTALA 233 (297)
T ss_dssp TTTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 888775 444443
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=5e-07 Score=93.92 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=101.2
Q ss_pred CCCCccch---HHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGV---ESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr---~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..++|+|. +..++.+..+... .+.+.|+|++|+||||||+.+++........+.|+. ..+.... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~~----- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---ST----- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---CG-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---HH-----
Confidence 44678874 3566666666654 788999999999999999999998765544455554 2221111 00
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--H--HHHHhcCCCCC-CCCC-eEEEEecCccc-ccc-----
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--Q--IKSLIRSPDWF-MADS-RIIITTRNKQV-LRN----- 279 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~--l~~l~~~~~~~-~~gs-~IIiTTR~~~v-~~~----- 279 (945)
.. .+.+ .++.+||+||++... . .+.+...+... ..+. ++|+||+...- ...
T Consensus 97 ---~~-------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ---AL-------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---GG-------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---HH-------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00 0011 356799999986431 1 22222211100 1222 58888874321 111
Q ss_pred ---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHh
Q 041079 280 ---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEIL 335 (945)
Q Consensus 280 ---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 335 (945)
+.....+++++++.++..+++...+...... -..+....+++.++|.+-.+..+
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 1112689999999999999998876432221 12456678888898887655433
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=1.5e-05 Score=87.39 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=141.2
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
..++++|++..++++..++.. ...|.|+|++|+|||++|++++++....| +.+. ... . .....+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~---~-~~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM---I-EKSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG---C-CSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh---c-cchhHHH
Confidence 456799999999999888865 35789999999999999999988765443 1221 111 0 1111111
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCC------------------CCCCCeEEE
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDW------------------FMADSRIII 269 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~------------------~~~gs~IIi 269 (945)
. .+ .. ..+..+|+||+++.. .....+...+.. ..++.++|.
T Consensus 99 ~-~~-----------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 99 A-IL-----------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp H-HH-----------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred H-HH-----------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1 10 00 246789999999754 223333221111 012346666
Q ss_pred EecCccccc---cCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhhccc------c
Q 041079 270 TTRNKQVLR---NCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILGCSL------F 340 (945)
Q Consensus 270 TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L------~ 340 (945)
||....... ....+..+.+++++.++..+++...+-.... .-..+....+++.+.|.|-.+..+...+ .
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 665433211 0123468999999999999999887643221 1124567778888999985554333221 1
Q ss_pred C---CCHHHHHHHHHHHHhccCcchhhhhhhhccCCChhhHhhhhhhcccCCCC--ChHHHHHHhhhcCCCcccchH-HH
Q 041079 341 E---KEKEVWESAINKLKRFLHPSIQEVLKVSYDGLDDNEKNIFLDVACFFKGE--DVYPVMKFLDASGFYPTTGIS-VL 414 (945)
Q Consensus 341 ~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~i~-~L 414 (945)
+ .+.+.....+. .+..+...++..++..+..++-. .+. ....+.+.+....-.....++ .|
T Consensus 238 ~~~~i~~~~~~~~~~------------~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l 304 (338)
T 3pfi_A 238 DEEIITEKRANEALN------------SLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYL 304 (338)
T ss_dssp TCSEECHHHHHHHHH------------HHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHH
T ss_pred cCCccCHHHHHHHHH------------HhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHH
Confidence 1 12233322222 23334456666666666666654 332 244444443211111122344 78
Q ss_pred Hhcccceec-CCEEehhHHH
Q 041079 415 VDKSLIAIS-YNKIMMHDLL 433 (945)
Q Consensus 415 ~~~sLi~~~-~~~~~mHdli 433 (945)
++.++|... .+++.-..-+
T Consensus 305 ~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 305 LANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp HHTTSEEEETTEEEECHHHH
T ss_pred HHcCceecCCCcccccHHHH
Confidence 888888766 4554433333
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=1.8e-06 Score=98.26 Aligned_cols=175 Identities=12% Similarity=0.130 Sum_probs=101.6
Q ss_pred CCcc-chHHHH--HHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccce--EEEEechhhhhccCCHHHHHH
Q 041079 139 NQLV-GVESRV--VAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGS--CFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 139 ~~~v-Gr~~~l--~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~s~~~~~l~~l~~ 210 (945)
+.|| |..... ..+...... ...+.|+|++|+||||||+++++.+...++.. +++. . ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H----------HHHHH
Confidence 4566 644332 333333332 35799999999999999999999886665432 3332 1 12233
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----HHHHHHhcCCCC-CCCCCeEEEEecCccc---------
Q 041079 211 ELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----RQIKSLIRSPDW-FMADSRIIITTRNKQV--------- 276 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----~~l~~l~~~~~~-~~~gs~IIiTTR~~~v--------- 276 (945)
++...+... ....+...+..+.-+|+|||++.. ...+.+...+.. ...|..||+||....-
T Consensus 174 ~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 174 DLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 344433321 133445555546789999998542 222333222111 1357789999876321
Q ss_pred cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCcchH
Q 041079 277 LRNCSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 277 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLal 332 (945)
...+....++.+++++.++..+++.+.+..... .++ +....|++.++|.+-.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHH
Confidence 111222257889999999999999887743221 122 34566777888877544
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=6.2e-06 Score=87.53 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=87.8
Q ss_pred CCccchHHHHHHHHh-------hhc---c--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHH
Q 041079 139 NQLVGVESRVVAIQS-------LLG---A--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLA 206 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~-------~L~---~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~ 206 (945)
..++|....++++.. .+. . .+.+.|+|++|+|||++|+++++.....| +.+...... .. ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g-~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IG-FSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TT-CCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cC-CchH
Confidence 456777666555544 221 1 56789999999999999999999754322 122211100 00 0111
Q ss_pred HHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh------------HHHHHH---hcCCCCCCCCCeEEEEe
Q 041079 207 CLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF------------RQIKSL---IRSPDWFMADSRIIITT 271 (945)
Q Consensus 207 ~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~l~~l---~~~~~~~~~gs~IIiTT 271 (945)
.....+ ...+......+..+|+||+++.. ..++.+ .......+....||.||
T Consensus 108 ~~~~~~-------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 108 AKCQAM-------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp HHHHHH-------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred HHHHHH-------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 110110 11122223456789999998643 223333 33222222334566777
Q ss_pred cCcccccc---C-CcceEEEcCCCCH-HHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 272 RNKQVLRN---C-SVKEIYEMKELRD-DHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 272 R~~~v~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
.....+.. . .....+.+++++. ++..+++.... .. ..+....+++.+.|.
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCC
Confidence 76643322 1 2256789999988 55555554421 11 134567788888884
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=3.1e-06 Score=93.57 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=109.9
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc--cccceEEEEechhhhhccCCHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS--DFEGSCFLENVREESQRSGGLACLRQEL 212 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~l~~l~~~l 212 (945)
..+.++|++..++.+...+.. ...+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +.. .+...+...+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~ 110 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDE-RGISIVREKV 110 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSC-CCHHHHTTHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccc-cchHHHHHHH
Confidence 557899999999999999887 355999999999999999999987642 12222221111 111 2232222221
Q ss_pred HHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-ccccC-CcceEEEc
Q 041079 213 LSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLRNC-SVKEIYEM 288 (945)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l 288 (945)
...................-..++-+|++|+++.. .....+...+.......++|++|.... +.... .....+++
T Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 111 -KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp -HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred -HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 11111100000000000111235569999998653 333444333322235667777775443 21111 11247899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 289 KELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 289 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
.+++.++..+.+...+......- ..+....++++++|.|..+..
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999988764322211 145678899999999876443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.7e-05 Score=87.53 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=100.7
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
.-++++|.+..++.|.+.+.. .+-|.|+|++|+|||+||+++++.....| +..+..+.....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~~~ 124 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 124 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHSCC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhhhh
Confidence 456799999999999887621 35689999999999999999999874332 211211111100
Q ss_pred C-CHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-------------HHHHHhcCC---CCCCCCC
Q 041079 203 G-GLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-------------QIKSLIRSP---DWFMADS 265 (945)
Q Consensus 203 ~-~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~---~~~~~gs 265 (945)
. ......+ ..+......++.+|+||+++... ....++..+ .....+.
T Consensus 125 ~g~~~~~~~----------------~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 125 MGESEKLVK----------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp ---CHHHHH----------------HHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred cchHHHHHH----------------HHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 0 0001111 11111223578899999997531 122232221 1112345
Q ss_pred eEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC-cchHHHhh
Q 041079 266 RIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV-PLALEILG 336 (945)
Q Consensus 266 ~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~lg 336 (945)
.||.||.....+.. -.....+.++..+.++..+++..++.+...... ......+++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666654432110 034567889999999999999887743322111 33456778888874 33444443
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.25 E-value=1.5e-05 Score=86.72 Aligned_cols=170 Identities=14% Similarity=0.085 Sum_probs=99.5
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
.-++++|.+..+++|.+.+.. .+.|.|+|++|+|||+||+++++.....| +..+..+.....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 91 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 91 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHTTT
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhhcc
Confidence 557799999999999887721 45799999999999999999999864432 211221111110
Q ss_pred -CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-------------HHHHHhcC---CCCCCCCC
Q 041079 203 -GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-------------QIKSLIRS---PDWFMADS 265 (945)
Q Consensus 203 -~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~---~~~~~~gs 265 (945)
.......+.+ +...-..++.+|+||+++... ....++.. ......+.
T Consensus 92 ~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 92 MGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp GGGHHHHHHHH----------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred cchHHHHHHHH----------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 0111111111 112223567899999997431 12223222 21223455
Q ss_pred eEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCC
Q 041079 266 RIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 266 ~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 328 (945)
.||.||.....+.. -.....+.++..+.++-.+++..++.+...... ......+++.+.|.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 66667765432210 023467889999999999999988744322111 23456777777764
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.23 E-value=3.4e-05 Score=83.87 Aligned_cols=178 Identities=14% Similarity=0.116 Sum_probs=100.3
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHh-hccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKI-SSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~s~~ 201 (945)
.-++++|.+..++.|.+.+.. .+.|.|+|++|+|||+||+++++.. ...| +.+ +..+....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i-~~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSI-SSSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEE-ECCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEE-EhHHHHhh
Confidence 446788988888888766521 4689999999999999999999976 2222 112 11111000
Q ss_pred c-CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCC---CCCCC
Q 041079 202 S-GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPD---WFMAD 264 (945)
Q Consensus 202 ~-~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~---~~~~g 264 (945)
. .......+.++ ...-..++.+|+||+++.. .....++..++ ....+
T Consensus 86 ~~g~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 86 WLGESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCCSCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred hhhHHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01111111111 1122356789999999754 11222322221 11234
Q ss_pred CeEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc-chHHHhh
Q 041079 265 SRIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP-LALEILG 336 (945)
Q Consensus 265 s~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg 336 (945)
..||.||.....+.. -..+..+.++..+.++..+++..++.+..... .......+++.+.|.. -.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455556654432111 03456889999999999999988763322111 1345667888888763 3344444
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=6.8e-06 Score=93.23 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=102.8
Q ss_pred CCCCccchHHHH---HHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 137 NNNQLVGVESRV---VAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 137 ~~~~~vGr~~~l---~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
..+.+||.+..+ ..+...+.. ...+.|+|.+|+||||+|+.+++.....|.. +. . .. .+...+...
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a----~~-~~~~~ir~~ 94 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-A----VT-SGVKEIREA 94 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-T----TT-CCHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-e----cc-CCHHHHHHH
Confidence 567899999888 677777766 5579999999999999999999987544321 11 1 11 333333222
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEEE-EecCcc--ccc-cCCcceE
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRIII-TTRNKQ--VLR-NCSVKEI 285 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIi-TTR~~~--v~~-~~~~~~~ 285 (945)
+ ... ......+++.+|++|+++... +.+.|+..+.. ....+|. ||.+.. +.. ......+
T Consensus 95 ~-~~a------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 95 I-ERA------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp H-HHH------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred H-HHH------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeE
Confidence 2 111 111224678899999997653 33333333321 2234444 444432 111 1122358
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCC-----CCCccHHHHHHHHHHHhcCCcchHH
Q 041079 286 YEMKELRDDHALELFSRHAFKQN-----HPDVGYEELSSRVIQYAQGVPLALE 333 (945)
Q Consensus 286 ~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~l~~~i~~~~~GlPLal~ 333 (945)
+.+++++.++..+++.+.+-... ....-..+....++++++|.+-.+.
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 89999999999999988764311 1111224567788888888876443
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=7e-06 Score=90.81 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=104.5
Q ss_pred CCCCccchHHHHHHHHhhh-cc--cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe-------------------
Q 041079 137 NNNQLVGVESRVVAIQSLL-GA--APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN------------------- 194 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L-~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~------------------- 194 (945)
..++++|.+..++.+.+++ .. ...+.|+|++|+||||+|+.++..+...-.+.+++..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 4567999999999999998 55 3339999999999999999999865322211111100
Q ss_pred ----chhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH--HHHHHhcCCCCCCCCCeEE
Q 041079 195 ----VREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR--QIKSLIRSPDWFMADSRII 268 (945)
Q Consensus 195 ----~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~II 268 (945)
.. .+..........++++..+...... .....+ ..+.+++-++|||+++... ..+.+...+....++.++|
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 92 YHLEIT-PSDMGNNDRIVIQELLKEVAQMEQV-DFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp SEEEEC-CC----CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred ceEEec-HhhcCCcchHHHHHHHHHHHHhccc-cccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 00 0000000000122222222211100 000000 0023467799999997642 2333333222223567888
Q ss_pred EEecCcc-ccccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchH
Q 041079 269 ITTRNKQ-VLRNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLAL 332 (945)
Q Consensus 269 iTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 332 (945)
++|.+.. +.... .....+++++++.++..+.+...+-..+..-+ ..+....+++.++|.+..+
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHH
Confidence 8887643 22111 22368999999999999999887643222111 0245678888899987644
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=1.5e-05 Score=86.28 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=86.6
Q ss_pred CccchHHHHHHHHhhhcc-----------------cCEEEEEecCCCcHHHHHHHHHHHhhcccc----ceEEEEechhh
Q 041079 140 QLVGVESRVVAIQSLLGA-----------------APLLGIWGIGGIGKTIIARAIFDKISSDFE----GSCFLENVREE 198 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~-----------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~ 198 (945)
.++|.+..++.|.+.+.. ...+.|+|++|+|||++|+.+++.+..... ..+.+ +....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~-~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSV-TRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEE-cHHHh
Confidence 368888888877765431 346999999999999999999987644321 12222 11111
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCC-----------ChHHHHHHhcCCCCCCCCCe
Q 041079 199 SQRSGGLACLRQELLSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVT-----------CFRQIKSLIRSPDWFMADSR 266 (945)
Q Consensus 199 s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~-----------~~~~l~~l~~~~~~~~~gs~ 266 (945)
.....+. . ...+...+ ..+.-+|+||+++ ....+..|...+.....+..
T Consensus 111 ~~~~~g~--~-----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 111 VGQYIGH--T-----------------APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp CCSSTTC--H-----------------HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred hhhcccc--c-----------------HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 1000000 0 11111111 1135699999997 33445555544433345678
Q ss_pred EEEEecCc----------cccccCCcceEEEcCCCCHHHHHHHHHHhhhc
Q 041079 267 IIITTRNK----------QVLRNCSVKEIYEMKELRDDHALELFSRHAFK 306 (945)
Q Consensus 267 IIiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 306 (945)
||.||... .+... ....+.+++++.++-.+++...+-.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 88887542 22222 3368999999999999999887743
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.19 E-value=2.3e-05 Score=89.23 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=107.3
Q ss_pred HHhhccccCCCCCCCCccchHHHHHHHHhhhc--------------ccCEEEEEecCCCcHHHHHHHHHHHhhccccceE
Q 041079 125 ILKRLAEVFPRDNNNQLVGVESRVVAIQSLLG--------------AAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSC 190 (945)
Q Consensus 125 i~~~l~~~~~~~~~~~~vGr~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 190 (945)
+...+....|...-++++|.+..++.|.+.+. ..+.|.|+|++|+|||+||+++++.... ..+
T Consensus 120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~ 196 (444)
T 2zan_A 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STF 196 (444)
T ss_dssp ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEE
T ss_pred hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCE
Confidence 33333333444355789999999999987662 1578999999999999999999997621 111
Q ss_pred EEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHH-HHcCCCcEEEEecCCCh-------------HHHHHHhc
Q 041079 191 FLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFR-RLSRMKVLIVFDDVTCF-------------RQIKSLIR 256 (945)
Q Consensus 191 ~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~-------------~~l~~l~~ 256 (945)
+..+..+ +. ....+. .......+.. .-..++.+|+||+++.. .....++.
T Consensus 197 ~~v~~~~----------l~----~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~ 260 (444)
T 2zan_A 197 FSISSSD----------LV----SKWLGE--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 260 (444)
T ss_dssp EEECCC-------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHT
T ss_pred EEEeHHH----------HH----hhhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHH
Confidence 1111110 00 000000 0111222222 22457789999999754 23455555
Q ss_pred CCCCC---CCCCeEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCc-
Q 041079 257 SPDWF---MADSRIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVP- 329 (945)
Q Consensus 257 ~~~~~---~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP- 329 (945)
.+... ..+..||.||.....+.. -..+..+.++..+.++..++|..++.+..... .......+++.+.|..
T Consensus 261 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sg 338 (444)
T 2zan_A 261 QMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSG 338 (444)
T ss_dssp TTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCH
T ss_pred HHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCH
Confidence 55432 345566667765432111 13446788999999999999988764322111 1244567788888743
Q ss_pred chHHHh
Q 041079 330 LALEIL 335 (945)
Q Consensus 330 Lal~~l 335 (945)
-.|..+
T Consensus 339 adl~~l 344 (444)
T 2zan_A 339 ADISII 344 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.19 E-value=1e-05 Score=80.00 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=42.3
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+.++||+.+++++.+.+.. .+.+.|+|.+|+||||+|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998876 678899999999999999999997744
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.18 E-value=2.7e-05 Score=87.20 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=99.2
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++.|...+.. .+.|.|+|.+|+|||+||++++++....| +..+........
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 188 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSKY 188 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhccc
Confidence 557899999999999888721 47899999999999999999998754322 222221111000
Q ss_pred -CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCC----CCCCCC
Q 041079 203 -GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSP----DWFMAD 264 (945)
Q Consensus 203 -~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~----~~~~~g 264 (945)
.........+ +...-...+.+|+||+++.. .....++..+ ......
T Consensus 189 ~g~~~~~~~~~----------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 189 VGEGEKLVRAL----------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp ---CHHHHHHH----------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred cchHHHHHHHH----------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0001111111 11122345679999999654 1112222111 111223
Q ss_pred CeEEEEecCcccccc---CCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc-hHHHh
Q 041079 265 SRIIITTRNKQVLRN---CSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL-ALEIL 335 (945)
Q Consensus 265 s~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 335 (945)
..||.||.....+.. -.....+.++..+.++..+++...+-.....- ..+....+++.+.|..- ++..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 455556654322111 12345788999999999999988774332221 13456778888888554 44443
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.16 E-value=2.1e-05 Score=85.69 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=101.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
..++++|.+..++.+.+++.. ..++.+.|++|+|||++|+++++.+... .+.+. . + . .+...+... +
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~-~-~~~~~i~~~-~ 93 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---S-D-CKIDFVRGP-L 93 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---T-T-CCHHHHHTH-H
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---c-c-cCHHHHHHH-H
Confidence 567899999999999999886 5678888999999999999999887422 22222 1 1 1 222222222 2
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH---HHHHHhcCCCCCCCCCeEEEEecCccccc-cC-CcceEEEc
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR---QIKSLIRSPDWFMADSRIIITTRNKQVLR-NC-SVKEIYEM 288 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~-~~-~~~~~~~l 288 (945)
....... ...+++-+||+|+++... ..+.+...+.....+.++|+||....-.. .. ....++++
T Consensus 94 ~~~~~~~-----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 94 TNFASAA-----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp HHHHHBC-----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred HHHHhhc-----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 2111100 012367899999998754 34444433332235678888887653111 00 11257999
Q ss_pred CCCCHHHHHHHHH-------HhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 289 KELRDDHALELFS-------RHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 289 ~~L~~~ea~~Lf~-------~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
++++.++-.+++. ..+...... ....+....+++.++|.+..
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIA-IADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHH
Confidence 9999888544332 222211111 11125567788888887653
No 198
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=9.9e-05 Score=82.78 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=46.0
Q ss_pred ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCCCCCCCEEECCCCCCcccc-hhhh
Q 041079 660 IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGRLSLLEELDLRRNNFERVP-ESII 737 (945)
Q Consensus 660 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~i~ 737 (945)
+..+.+|+.+.+..+.. ..-...+.++++|+.+.+. +.+..++. .+.++++|+.++|..+ ++.+. ..+.
T Consensus 261 F~~c~~L~~i~lp~~~~-------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTCSSCCEEECCTTCC-------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eeecccccEEecccccc-------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 44566667666643321 1112234566677777764 34555543 5566677777777643 55554 3566
Q ss_pred CCCCCCEEeecc
Q 041079 738 QLSKLNYLYLSY 749 (945)
Q Consensus 738 ~l~~L~~L~L~~ 749 (945)
+|.+|+.+.|..
T Consensus 332 ~C~~L~~i~ip~ 343 (394)
T 4gt6_A 332 GCEQLERIAIPS 343 (394)
T ss_dssp TCTTCCEEEECT
T ss_pred CCCCCCEEEECc
Confidence 677777776643
No 199
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.11 E-value=5.2e-05 Score=84.23 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=102.1
Q ss_pred CCCccchHHHHHHHHhhh---cc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH
Q 041079 138 NNQLVGVESRVVAIQSLL---GA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L---~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
.+.+||++..++.+..+. .. .+.+.|+|++|+|||++|+++++.+....+.. .+....-.+.. .+......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLE-MSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSS-SCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcc-cchhHHHH
Confidence 568999999877754444 33 35899999999999999999999886433221 12111111111 22222222
Q ss_pred HHHHHHhCC-------------------------------CC-c-cCC-HHHH---HH--HHcCC----CcEEEEecCCC
Q 041079 211 ELLSKLLKH-------------------------------EN-V-ILD-IDLN---FR--RLSRM----KVLIVFDDVTC 247 (945)
Q Consensus 211 ~ll~~l~~~-------------------------------~~-~-~~~-~~~l---~~--~L~~k----r~LlVLDdv~~ 247 (945)
+.+...... .. . ... ...+ .. ...++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222221100 00 0 000 1111 11 11233 35999999976
Q ss_pred h--HHHHHHhcCCCCCCCCCeEEEEecC-cc------------ccc-cCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 041079 248 F--RQIKSLIRSPDWFMADSRIIITTRN-KQ------------VLR-NCSVKEIYEMKELRDDHALELFSRHAFKQNHPD 311 (945)
Q Consensus 248 ~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~------------v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 311 (945)
. +....+...+...... .++++|.. .. +.. ...-...+.+++++.++..+++...+-.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~- 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE- 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC-
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 4 3344454444332222 34444431 10 100 00112458999999999999999877443222
Q ss_pred ccHHHHHHHHHHHhc-CCcchHHH
Q 041079 312 VGYEELSSRVIQYAQ-GVPLALEI 334 (945)
Q Consensus 312 ~~~~~l~~~i~~~~~-GlPLal~~ 334 (945)
-..+....+++++. |.|..+..
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHH
Confidence 12456778888887 77765443
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.10 E-value=2e-05 Score=85.90 Aligned_cols=172 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred CCCcc-chH--HHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHH
Q 041079 138 NNQLV-GVE--SRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQ 210 (945)
Q Consensus 138 ~~~~v-Gr~--~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~ 210 (945)
.++|| |.. .....+...... ...+.|+|++|+||||||+.+++.....-...+++. . ..+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHH
Confidence 35565 533 223344444433 357999999999999999999998754422233442 1 11222
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH----HHHHHhcCCC-CCCCCCeEEEEecCccc---------
Q 041079 211 ELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR----QIKSLIRSPD-WFMADSRIIITTRNKQV--------- 276 (945)
Q Consensus 211 ~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~-~~~~gs~IIiTTR~~~v--------- 276 (945)
.+...+... ....+...+. +.-+|++||++... ..+.+...+. ....|.+||+||....-
T Consensus 79 ~~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 79 AMVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp HHHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred HHHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 333322211 1233333333 47799999986532 2222222111 01246678888864321
Q ss_pred cccCCcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcc
Q 041079 277 LRNCSVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPL 330 (945)
Q Consensus 277 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 330 (945)
...+....++++++ +.++..+++...+......-+ .+....+++++ |..-
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 11112235799999 999999999888753322211 35567777888 7654
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.00031 Score=78.76 Aligned_cols=249 Identities=9% Similarity=0.114 Sum_probs=125.7
Q ss_pred eeccCchhhccCc-CccccccccccCCCCCccccccCcceeEEEecCCc--CCccCCCCCCCccccccceeeecCCCCCC
Q 041079 485 EMHLNSDTFTKMP-KLRFLKFYRSSINGENKCKQQHHGKLKQIIISAGN--FFTKTPKPSFIPYLKELVILNLRGCKGLK 561 (945)
Q Consensus 485 ~~~l~~~~f~~~~-~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~--~l~~~~~~~~~~~l~~L~~L~L~~~~~l~ 561 (945)
...+...+|..+. .|+.+.+-.. +...-...|.++.+|+.+.+..+. .++.+. ...+.++.+|+.+.+..+ +.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig-~~aF~~c~~L~~i~~~~~--~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIG-RQAFMFCSELTDIPILDS--VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEEC-TTTTTTCTTCCBCGGGTT--CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEec-hhhchhcccceeeccCCc--cc
Confidence 3456777888774 5777776532 333334567788888888876542 233322 234556666666665432 33
Q ss_pred CCC--CccCCcccceEeecCCCCcccC-ccccCCccccEEeccccccccccCcccCCCCCCCEEeccCCCCCCccCCccC
Q 041079 562 KLP--EISSLSNIEKIILSGTAIEELP-SSVGCLSGLVLLHLQACKMLKSLPCSLFKLKSLEDLNLCRCSNLRRFPEEIG 638 (945)
Q Consensus 562 ~lp--~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~ 638 (945)
.++ .+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+...- ...-...+.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~ 202 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFS 202 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTT
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhh
Confidence 343 3455777777777543 33332 34556677777776543 44444433344566666664321 111122234
Q ss_pred CcccCccccccCCCCccCCccccC--------------CCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCC
Q 041079 639 NVEASNSLYAYGTASSEVPSSIVR--------------SNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNC 704 (945)
Q Consensus 639 ~l~~L~~L~l~~~~~~~lp~~l~~--------------l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 704 (945)
++.+|............+...+.. ...+..+.+... ....-...+.++.+|+.+.+.++
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-------v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-------VARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-------EEEECTTTTTTCSSCCEEECCTT
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCc-------ceEcccceeeecccccEEecccc
Confidence 444444443333222211111110 111111111100 00111224556677777777554
Q ss_pred CCCccCcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeecc
Q 041079 705 GVTRLPESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSY 749 (945)
Q Consensus 705 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~ 749 (945)
...--...+.++++|+.+.+. +.++.++. .+.++.+|+.++|..
T Consensus 276 ~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 276 VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 322223356667777777775 34666663 566677777777754
No 202
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=4.6e-05 Score=85.56 Aligned_cols=232 Identities=13% Similarity=0.093 Sum_probs=129.1
Q ss_pred ccccCcceeEEEecCCcCCccCCCCCCCccccccceeeecCCCCCCCCC--CccCCcccceEeecCCCCcccCccccCCc
Q 041079 516 KQQHHGKLKQIIISAGNFFTKTPKPSFIPYLKELVILNLRGCKGLKKLP--EISSLSNIEKIILSGTAIEELPSSVGCLS 593 (945)
Q Consensus 516 ~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 593 (945)
.+..+.+|+.+.+..+. ..+ ....+.++.+|+.+++..+ +..++ .+.++..|+.+.+..+.. .+........
T Consensus 157 aF~~c~~L~~i~l~~~~--~~I-~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~ 230 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM--ETL-HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKT 230 (394)
T ss_dssp TTTTCTTCCEEECCTTC--CEE-CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTC
T ss_pred hhcccCCCcEEecCCcc--cee-ccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccC
Confidence 34455555555554321 111 1233445555555555443 23333 344456666665544322 2222233345
Q ss_pred cccEEeccccccccccC-cccCCCCCCCEEeccCCCCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcc
Q 041079 594 GLVLLHLQACKMLKSLP-CSLFKLKSLEDLNLCRCSNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFR 672 (945)
Q Consensus 594 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 672 (945)
+|+.+.+... ...+. ..+..+.+|+.+.+..+ ....-...+..+..|+.+....+.+.. ..+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEEC
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccc
Confidence 6666666542 22222 23456677777777543 222223345556666666554433221 245677788888875
Q ss_pred cCCCCccCccccccccccCCCCCCCEEeccCCCCCccC-cccCCCCCCCEEECCCCCCcccc-hhhhCCCCCCEEeeccC
Q 041079 673 ESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP-ESLGRLSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLSYC 750 (945)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c 750 (945)
.+- . ..-...+.++.+|+.++|.+ .+..+. .++.++++|+.++|..+ ++.++ ..+.+|++|+.+++..+
T Consensus 306 ~~i--~-----~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DSV--K-----FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTC--C-----EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc--c-----eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 432 1 12234567888999999865 366664 47788999999999776 77776 46788999999988653
Q ss_pred CCCcccCCcccccceEeeccCcccccc
Q 041079 751 QRLQSLPELPCNLILLYADHCTVLKSI 777 (945)
Q Consensus 751 ~~l~~lp~l~~~L~~L~~~~c~~L~~l 777 (945)
++.+ . -...+|++|+.+
T Consensus 377 --~~~~-------~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 --LEQY-------R-YDFEDTTKFKWI 393 (394)
T ss_dssp --GGGG-------G-GGBCTTCEEEEE
T ss_pred --CEEh-------h-heecCCCCCcEE
Confidence 2222 1 135678877654
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=0.00012 Score=78.62 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=88.7
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
.-++++|.+..+++|.+.+.. .+.|.|+|++|.|||+||+++++.....| +.+ +.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~~------ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-KG------ 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-CH------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-Eh------
Confidence 446789999888888776531 56799999999999999999999764322 111 11
Q ss_pred cCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChH----------------HHHHHhcCCCC--CC
Q 041079 202 SGGLACLRQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFR----------------QIKSLIRSPDW--FM 262 (945)
Q Consensus 202 ~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~--~~ 262 (945)
..+. ....+... .. ...+.......+.+|++|+++... ....++..+.. ..
T Consensus 83 ----~~l~----~~~~g~~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 83 ----PELL----TMWFGESE--ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp ----HHHH----HHHHTTCT--THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred ----HHHH----hhhcCchH--HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 1111 12211111 11 222233334567899999997431 12222222111 12
Q ss_pred CCCeEEEEecCcccc-----ccCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 263 ADSRIIITTRNKQVL-----RNCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
.+..||.||.....+ ........+.++..+.++-.+++..+.-
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 345677777654322 1112456899999999999999877663
No 204
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=8.5e-05 Score=81.21 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=100.7
Q ss_pred HHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhcccc---------------------ceEEEEechhhhh
Q 041079 145 ESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISSDFE---------------------GSCFLENVREESQ 200 (945)
Q Consensus 145 ~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~s~ 200 (945)
+...+.+...+.. .+.+.++|++|+||||+|+.+++.+..... ...++... +...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccCC
Confidence 4455666666654 557999999999999999999997643321 12222100 0000
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-cc
Q 041079 201 RSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VL 277 (945)
Q Consensus 201 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~ 277 (945)
. .+...+ +++...+.... ..+++-++|+|+++.. +..+.|+..+....++..+|++|.+.+ +.
T Consensus 87 ~-~~i~~i-r~l~~~~~~~~------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 87 T-LGVDAV-REVTEKLNEHA------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (334)
T ss_dssp S-BCHHHH-HHHHHHTTSCC------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred C-CCHHHH-HHHHHHHhhcc------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 0 112221 12222211100 1246789999999764 345555554444445677777776653 22
Q ss_pred ccC-CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHHHhh
Q 041079 278 RNC-SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALEILG 336 (945)
Q Consensus 278 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 336 (945)
... .....+++++++.++..+.+...+ .. ..+.+..+++.++|.|..+..+.
T Consensus 153 ~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 153 ATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 211 233589999999999999988765 11 13456778999999997665444
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0001 Score=81.12 Aligned_cols=169 Identities=19% Similarity=0.275 Sum_probs=100.4
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
.-+++.|.+..+++|.+.+.. .+-|.++|++|.|||.||++++++....| +.....+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 345688999999988876542 57799999999999999999999876544 22122221111
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------H---HHHHHhcCCCCC--C
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------R---QIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~--~ 262 (945)
..+ .....++++. ..-...+++|++|++|.. . .+..++..++.+ .
T Consensus 222 ~vGese~~vr~lF~----------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 222 YIGEGSRMVRELFV----------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp STTHHHHHHHHHHH----------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHH----------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 011 1222222222 222457899999999642 1 133343333322 2
Q ss_pred CCCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCc
Q 041079 263 ADSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 329 (945)
.+..||.||...+.+. .-..+..++++..+.++-.++|..+.-+-.. .+.++ .++++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 3445566776554322 1135678999999999999999877643222 22233 45566666643
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00032 Score=78.36 Aligned_cols=168 Identities=18% Similarity=0.333 Sum_probs=99.9
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
.-+++.|.+..+++|.+.+.. .+-|.++|++|.|||+||+++++.....| +.....+....
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 345688999999988776532 57899999999999999999999876443 22222221111
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------H---HHHHHhcCCCCC--C
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------R---QIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~--~ 262 (945)
..+ .....+.++ ...-...+++|++|++|.. . .+..++..++.+ .
T Consensus 255 ~~Gese~~ir~~F----------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 255 YIGESARIIREMF----------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp SSSHHHHHHHHHH----------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred cchHHHHHHHHHH----------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 111 112222221 1222467899999999631 0 133333332211 2
Q ss_pred CCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCC
Q 041079 263 ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 328 (945)
.+..||.||...+.+.. -..+..++++..+.++-.++|..+.-+-.. .+.++ ..+++.+.|.
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 34567777765543321 124678999999999999999877643222 22333 3455666664
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=3.9e-05 Score=75.69 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhhcccc-ceEEEEechhhhhccCCHHHHHHHHHHHHh
Q 041079 144 VESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKISSDFE-GSCFLENVREESQRSGGLACLRQELLSKLL 217 (945)
Q Consensus 144 r~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~ 217 (945)
....++.+.+++.. ...++|+|++|+||||||+.+++.+..... .+.++. ...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHhc
Confidence 34445555555433 578999999999999999999998752222 233432 1222233322222
Q ss_pred CCCCccCCHHHHHHHHcCCCcEEEEecCCC--hH-----HHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 218 KHENVILDIDLNFRRLSRMKVLIVFDDVTC--FR-----QIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 218 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~-----~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
..... .+.+.+. +.-+|||||++. .+ .+..+.... ...|..+|+||...
T Consensus 88 ~~~~~-----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~--~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 EGKDT-----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYR--YNNLKSTIITTNYS 143 (180)
T ss_dssp HTCCS-----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHH--HHTTCEEEEECCCC
T ss_pred CchHH-----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHH--HHcCCCEEEEcCCC
Confidence 11111 2222333 467899999962 11 222322221 12577899988754
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0004 Score=77.37 Aligned_cols=167 Identities=17% Similarity=0.257 Sum_probs=98.3
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
-+++.|.+..+++|.+.+.. .+-|.++|++|.|||+||++++++....| +.....+.....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 35789999999998875421 67899999999999999999999876543 221222211111
Q ss_pred CC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCCCC--C
Q 041079 203 GG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDWFM--A 263 (945)
Q Consensus 203 ~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~--~ 263 (945)
.+ .....+.++ ...-...+++|++|+++.. ..+..++..++.+. .
T Consensus 284 vGesek~ir~lF----------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 284 VGEGARMVRELF----------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp SSHHHHHHHHHH----------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred CCHHHHHHHHHH----------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 112222222 1222457899999998632 01222332222222 2
Q ss_pred CCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCC
Q 041079 264 DSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 328 (945)
+..||.||...+.+. .-..+..++++..+.++-.++|..++-+-.. .+.++ ..+++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 334556775544322 1135678999999999999999877643221 22233 3456666664
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00011 Score=82.04 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=98.9
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
-+++.|.+..+++|.+.+.. .+-|.++|++|.|||.||++++++....| +.....+.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 45789999999998876422 57899999999999999999999875443 222222221111
Q ss_pred CC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------H---HHHHHhcCCCCCC--C
Q 041079 203 GG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------R---QIKSLIRSPDWFM--A 263 (945)
Q Consensus 203 ~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~~--~ 263 (945)
.+ .....+.++. ..-...+++|++|+++.. . .+..++..++.+. .
T Consensus 256 vGese~~ir~lF~----------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 256 IGEGAKLVRDAFA----------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp SSHHHHHHHHHHH----------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred cchHHHHHHHHHH----------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 11 1222222222 122346899999998421 1 1333444333332 2
Q ss_pred CCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCC
Q 041079 264 DSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 264 gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 328 (945)
+-.||.||...+.+.. -..+..++++..+.++..++|..+.-+-.. ++.++ .++++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 3455557765544321 135678999999999999999877643221 22233 3455666664
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=0.00017 Score=75.59 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++++.+.+.. .+-+.|+|++|.||||||+++++.....| +.+. ........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHh
Confidence 456789998888777665321 45689999999999999999998764332 2222 11111100
Q ss_pred CC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCC--CCC
Q 041079 203 GG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDW--FMA 263 (945)
Q Consensus 203 ~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~--~~~ 263 (945)
.+ ...-. ...+.......+.++++|+++.. ..+..++..+.. ...
T Consensus 86 ~~~~~~~~----------------~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 86 VGVGASRV----------------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp CCCCHHHH----------------HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred hhhhHHHH----------------HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 00000 11122222345679999998321 122333222111 123
Q ss_pred CCeEEEEecCccccc-c----CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 264 DSRIIITTRNKQVLR-N----CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
+..||.||...+... . ...+..+.++..+.++-.+++..++
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 445666776543221 1 1234678888889988888887765
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=5.2e-06 Score=82.47 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=67.5
Q ss_pred cccCCCCCCCEEeccCC-CCCCccCCccCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccc
Q 041079 611 CSLFKLKSLEDLNLCRC-SNLRRFPEEIGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLS 689 (945)
Q Consensus 611 ~~i~~l~~L~~L~Ls~~-~~~~~lp~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 689 (945)
..+...++|++|+|++| .....- ...+...+...++|+.|++++|..... + ...+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g-------------------~~~l~~~L~~~~~L~~L~Ls~n~i~~~-g-~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPT-------------------LKACAEALKTNTYVKKFSIVGTRSNDP-V-AFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHH-------------------HHHHHHHHTTCCSCCEEECTTSCCCHH-H-HHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHH-------------------HHHHHHHHHhCCCcCEEECcCCCCChH-H-HHHHHHH
Confidence 34556677888888776 432110 011222233344555555555542110 0 0111222
Q ss_pred cCCCCCCCEEeccCCCCCc-----cCcccCCCCCCCEEEC--CCCCCc-----ccchhhhCCCCCCEEeeccCC
Q 041079 690 SDGLHSLKSLCLHNCGVTR-----LPESLGRLSLLEELDL--RRNNFE-----RVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 690 l~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L--s~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 751 (945)
+...++|++|+|++|.+.. +...+...++|++|+| ++|.+. .+...+...++|+.|+|++|.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3344667777777777773 5566666777888888 777776 244566667778888888775
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=6.1e-05 Score=71.37 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=35.5
Q ss_pred CccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 140 QLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+++|++..++++.+.+.. ..-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999988887754 5678899999999999999998864
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.76 E-value=0.00026 Score=81.07 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhhccCCHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF------EGSCFLENVREESQRSGGLACL 208 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~l~~l 208 (945)
..+.+|||+.+++.+...+.. ..-+.|+|.+|+|||++|+.++..+...+ ...++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 446799999999999999865 66788999999999999999999874432 1112211110
Q ss_pred HHHHHHHHhCCCCccCCHH-HHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcccc---ccC----
Q 041079 209 RQELLSKLLKHENVILDID-LNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVL---RNC---- 280 (945)
Q Consensus 209 ~~~ll~~l~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~---~~~---- 280 (945)
....+ ....... .+...-..++.+|++| ...+....|...+. ....++|.+|...... ...
T Consensus 246 -----~~~~g--~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 -----TKYRG--EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----ccccc--hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 0001112 2222223567899999 23333333444443 1234666655544311 100
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhh
Q 041079 281 SVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 281 ~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.-...+.++..+.++..+++...+
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 122479999999999999998755
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.74 E-value=9.9e-05 Score=91.26 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=41.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+.+|||+.+++++...+.. .+.+.++|.+|+||||+|+.+++++..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446799999999999998876 557899999999999999999998743
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00066 Score=74.85 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=98.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
.-+++.|.+..+++|.+.+.. .+-|.++|++|.|||.||++++++....|- .....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhc
Confidence 345688999999988776532 578999999999999999999998765432 2222221111
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCCC--C
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDWF--M 262 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~--~ 262 (945)
..+ .....+.++. ..-...+++|++|++|.. ..+..++...+.+ .
T Consensus 256 ~vGesek~ir~lF~----------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 256 YLGDGPRLCRQIFK----------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SSSHHHHHHHHHHH----------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred cCchHHHHHHHHHH----------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 111 1222222222 122356899999998531 1123333322222 2
Q ss_pred CCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCC
Q 041079 263 ADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~Gl 328 (945)
.+..||.||...+.+.. -..+..++++..+.++-.++|..+.-+-.. .+.++ ..+++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 34455667765543321 134567899999999999999877643222 22233 3455566654
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.71 E-value=0.00017 Score=82.49 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=87.6
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
.+.++|.+..+++|.+++.. .+-|.|+|.+|.|||++|++++++....| +..+..+.....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 35689999999999887642 46799999999999999999998763222 222222221110
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCCC--CCCCCeE
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPDW--FMADSRI 267 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~gs~I 267 (945)
.+ .....+ ...+.....+++.+|+||+++.. .....|+..+.. ...+.+|
T Consensus 279 ~g--~~~~~~-------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 279 AG--ESESNL-------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp TT--HHHHHH-------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred cc--hhHHHH-------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 000000 12223334567789999998311 112222222111 1234455
Q ss_pred EEEecCccc-----cccCCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 268 IITTRNKQV-----LRNCSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 268 IiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
|.||..... .........+.+...+.++-.+++..++-
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 666664422 11123456799999999999999988763
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.70 E-value=0.00063 Score=77.23 Aligned_cols=170 Identities=14% Similarity=0.192 Sum_probs=97.0
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++++.+.... .+-|.|+|++|.|||+||++++.+....| +.+ +..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~i-s~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHI-SGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEE-EGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeC-CHHHHHHHH
Confidence 345789998887777665432 35688999999999999999999764333 122 222221111
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCCC--CCC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDWF--MAD 264 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~g 264 (945)
.+... .. . ...+.......+.+|+||+++.. ..+..++..++.+ ..+
T Consensus 90 ~g~~~--~~-~------------r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 90 VGVGA--AR-V------------RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp TTHHH--HH-H------------HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred hcccH--HH-H------------HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 11100 00 0 12233334467899999998542 1233343322211 234
Q ss_pred CeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhhhcCCCC-CccHHHHHHHHHHHhcCCc
Q 041079 265 SRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHAFKQNHP-DVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 265 s~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP 329 (945)
..||.||...+.+.. -..+..+.++..+.++-.+++..++-+.... +.+ ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 566767766543321 1245588999999988888888766432211 112 234666777766
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.67 E-value=0.00031 Score=85.94 Aligned_cols=150 Identities=14% Similarity=0.162 Sum_probs=88.8
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc------ccceEEEEechhhhh---ccCCH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD------FEGSCFLENVREESQ---RSGGL 205 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~s~---~~~~l 205 (945)
..+.++||+.+++++.+.|.. ..-+.|+|.+|+||||+|+.+++++... ....+|..+...... .....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 346799999999999999886 6678999999999999999999876332 123333222111100 00111
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh----------HHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 206 ACLRQELLSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF----------RQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 206 ~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
....+. +.+.+ ..++.+|++|+++.. .+...++...-. ..+.++|.+|...
T Consensus 264 e~~l~~-----------------~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~ 325 (758)
T 1r6b_X 264 EKRFKA-----------------LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQ 325 (758)
T ss_dssp HHHHHH-----------------HHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHH
T ss_pred HHHHHH-----------------HHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCch
Confidence 111111 22222 235789999999754 223333433322 2345666666543
Q ss_pred ccccc-------CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 275 QVLRN-------CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 275 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
..... ......+.++..+.++..+++...+
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21100 1122478999999999999987654
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00034 Score=78.00 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=92.8
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
-+++.|.+...++|.+.+.. .+-|.++|++|.|||+||+++++.....| +.....+.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 35788999999988876542 56799999999999999999999875443 222222211111
Q ss_pred CC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------H---HHHHHhcCCCCC--CC
Q 041079 203 GG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------R---QIKSLIRSPDWF--MA 263 (945)
Q Consensus 203 ~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~l~~l~~~~~~~--~~ 263 (945)
.+ .....+.++. ..-...+++|++|+++.. . .+..++..++.+ ..
T Consensus 247 ~Ge~e~~ir~lF~----------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 247 LGEGPRMVRDVFR----------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp CSHHHHHHHHHHH----------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cchhHHHHHHHHH----------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 11 1122222221 222456899999998421 1 133333222211 23
Q ss_pred CCeEEEEecCccccc-----cCCcceEEEcCCC-CHHHHHHHHHHhhhcCC-CCCccHHHHHHHHHHHhcCC
Q 041079 264 DSRIIITTRNKQVLR-----NCSVKEIYEMKEL-RDDHALELFSRHAFKQN-HPDVGYEELSSRVIQYAQGV 328 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L-~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~Gl 328 (945)
|..||.||...+.+. ....+..++++.+ +.++-.++|..+.-+-. .++.++ ..+++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 445666776554322 1134557788755 56666677766653322 122333 3455566664
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00017 Score=79.16 Aligned_cols=178 Identities=14% Similarity=0.227 Sum_probs=103.1
Q ss_pred CCCCccchHHHHHHHHhhhcccCE--EEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPL--LGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELL 213 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~--v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll 213 (945)
....++|.+..++.|...+...++ +.++|++|+||||+|+.+++.+... +...+.-.+. +.. .+...+.. .+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~-~~~~~ir~-~i 97 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDD-RGIDVVRN-QI 97 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSC-CSHHHHHT-HH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccc-ccHHHHHH-HH
Confidence 445688999999999888877333 9999999999999999999976432 2211111111 111 23333322 22
Q ss_pred HHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCcc-cccc-CCcceEEEcC
Q 041079 214 SKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNKQ-VLRN-CSVKEIYEMK 289 (945)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~ 289 (945)
..+..... .+.+.+-++|+|+++.. ...+.|...+.......++|++|.... +... ......+++.
T Consensus 98 ~~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 98 KDFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 22111000 01234678999998643 333444333222235667777775442 1111 1123478999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcch
Q 041079 290 ELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLA 331 (945)
Q Consensus 290 ~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 331 (945)
+++.++..+.+...+-..... - ..+....+++.++|.+--
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~-i-~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLK-L-SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCC-B-CHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHcCCCHHH
Confidence 999999988887765322211 1 134567888889998763
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.63 E-value=0.0023 Score=71.01 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=59.5
Q ss_pred cCCcccCccccccCCCCccCCccccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccCc-ccCC
Q 041079 637 IGNVEASNSLYAYGTASSEVPSSIVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLPE-SLGR 715 (945)
Q Consensus 637 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~ 715 (945)
+....+|+.+.+..+-..--...+..+.+|+.+.+..+- . ..-...+.++.+|+.+.+.. ++..++. .+..
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v--~-----~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV--T-----SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC--C-----EECTTTTTTCTTCCEEEECC-CCSEECTTTTTT
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCc--c-----EeCccccceeehhccccccc-cceecccccccc
Confidence 334445555554333211112244556667777665431 1 11123355667777777754 3455443 5677
Q ss_pred CCCCCEEECCCCCCcccc-hhhhCCCCCCEEeec
Q 041079 716 LSLLEELDLRRNNFERVP-ESIIQLSKLNYLYLS 748 (945)
Q Consensus 716 l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~ 748 (945)
+++|+.+.+.++.++.++ ..+.++.+|+.+.|.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 788888888877777776 356677788877764
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=7.7e-06 Score=81.22 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=8.8
Q ss_pred CCCCCCEEeccCCCCC
Q 041079 692 GLHSLKSLCLHNCGVT 707 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~ 707 (945)
..++|+.|+|++|.+.
T Consensus 149 ~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 149 KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCCSSHH
T ss_pred hCCCcCEEeccCCCCC
Confidence 3455666666665543
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=2e-05 Score=82.38 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCCEEeccCCCCCcc---CcccCCCCCCCEEECCCCCCcccchhhhCCC--CCCEEeeccCCCCcccC
Q 041079 693 LHSLKSLCLHNCGVTRL---PESLGRLSLLEELDLRRNNFERVPESIIQLS--KLNYLYLSYCQRLQSLP 757 (945)
Q Consensus 693 l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~c~~l~~lp 757 (945)
+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+|+.+. .+..+. +|+.|+|++|+..+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 34444555555544432 233344555555555555555442 222222 55555555555444443
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.57 E-value=0.0011 Score=72.14 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=94.3
Q ss_pred CCCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLR 209 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~ 209 (945)
..+.++|.+..++.+...+.. ...++|+|++|+||||||+.++..+...|. ... .... .....+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~---~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL---VKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC---CSHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh---cCHHHHH
Confidence 445688988888887766653 378999999999999999999998754332 110 0000 1111111
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCC--------C----------CCCeEE-
Q 041079 210 QELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWF--------M----------ADSRII- 268 (945)
Q Consensus 210 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~gs~II- 268 (945)
.+...+ .++-++++|+++.. ...+.+....... + +...++
T Consensus 95 ------------------~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 95 ------------------AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ------------------HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ------------------HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 011112 23457788887543 2223322111000 0 111222
Q ss_pred EEecCccccccC--CcceEEEcCCCCHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhcCCcchHH
Q 041079 269 ITTRNKQVLRNC--SVKEIYEMKELRDDHALELFSRHAFKQNHPDVGYEELSSRVIQYAQGVPLALE 333 (945)
Q Consensus 269 iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 333 (945)
.|++...+.... ...-...+++.+.++-.+++.+.+-.... .-..+.+..|++.+.|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHH
Confidence 244432221111 12346899999999999999887633221 1224668889999999996543
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.56 E-value=6.9e-05 Score=79.15 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=83.6
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++++.+.+.. .+-+.|+|++|+|||+||+++++.....|-. + +.......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh-
Confidence 456799999888888776641 3457899999999999999999987544321 1 11110000
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChH-----------------HHHHHhcCCCCCC---
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFR-----------------QIKSLIRSPDWFM--- 262 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~l~~l~~~~~~~~--- 262 (945)
..+...... ...+......++.+|+||+++... .+..++..+....
T Consensus 84 -------------~~~~~~~~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 -------------FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------------CSSSCSSSS-STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------------hcchHHHHH-HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000000000 111222223467899999996531 1223333333221
Q ss_pred CCCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 263 ADSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 263 ~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
....||.||.....+. .......+.++..+.++..+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1245666666543221 11233567788888888888887655
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.00026 Score=76.26 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHhhhcc----------------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 139 NQLVGVESRVVAIQSLLGA----------------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----------------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+.++|.+..++.+...+.. ...+.|+|.+|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578888888887766532 45688999999999999999999774
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.52 E-value=0.0035 Score=69.60 Aligned_cols=125 Identities=12% Similarity=0.154 Sum_probs=85.9
Q ss_pred cCCCCCCCEEeccCCCCCCccC-CccCCcccCccccccCCCCccCCc-cccCCCCCcEEEcccCCCCccCcccccccccc
Q 041079 613 LFKLKSLEDLNLCRCSNLRRFP-EEIGNVEASNSLYAYGTASSEVPS-SIVRSNNFRFLSFRESRGDKQMGLSLLISLSS 690 (945)
Q Consensus 613 i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 690 (945)
+..+.+|+.+.+..+ ...++ ..+.++..|+.+.+..+ +..+.. .+.++.+|+.+.+..+- . ..-...+
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i--~-----~i~~~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV--K-----TVPYLLC 282 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC--S-----EECTTTT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc--e-----ecccccc
Confidence 445667777776532 22332 34567778888887654 444433 56678889999886432 1 1223356
Q ss_pred CCCCCCCEEeccCCCCCccC-cccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeec
Q 041079 691 DGLHSLKSLCLHNCGVTRLP-ESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLS 748 (945)
Q Consensus 691 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~ 748 (945)
.++++|+.+.+.++.+..++ ..+.++++|+.+.|..+ ++.++. .+.+|++|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 78999999999998888876 47888999999999754 777763 67778888877664
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=7.1e-05 Score=78.25 Aligned_cols=82 Identities=21% Similarity=0.068 Sum_probs=61.3
Q ss_pred cCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCccC--cccCCCCCCCEEECCCCCCc-ccc----
Q 041079 661 VRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTRLP--ESLGRLSLLEELDLRRNNFE-RVP---- 733 (945)
Q Consensus 661 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~-~lp---- 733 (945)
.++++|+.|+|++|...... .++..+..+++|+.|+|++|.+..+. ..+..+ +|++|+|++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~----~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD----DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG----GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCc----cchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 46889999999999853311 23344557899999999999999762 233444 9999999999997 454
Q ss_pred ---hhhhCCCCCCEEee
Q 041079 734 ---ESIIQLSKLNYLYL 747 (945)
Q Consensus 734 ---~~i~~l~~L~~L~L 747 (945)
..+..+++|+.||=
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 24678899998863
No 229
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.46 E-value=0.0001 Score=71.39 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=14.8
Q ss_pred CCCEEeccCCCCCc-cCcccCCCCCCCEEECCCC
Q 041079 695 SLKSLCLHNCGVTR-LPESLGRLSLLEELDLRRN 727 (945)
Q Consensus 695 ~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n 727 (945)
.|+.|++++|.++. -...+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 34444444444442 1123344555555555555
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00027 Score=76.33 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 139 NQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
+.++|.+..++.+...+.. ...+.++|.+|+||||+|+.+++.....-...+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 3578888888888777665 14799999999999999999999775433333343
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.41 E-value=0.00054 Score=83.65 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhhccCCHHHH
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSDF------EGSCFLENVREESQRSGGLACL 208 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~l~~l 208 (945)
..+.+|||+.+++++...|.. ..-+.++|.+|+|||++|+.+++.+.... ...++..+. ..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g~--------- 246 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--GT--------- 246 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--cc---------
Confidence 346799999999999999866 66789999999999999999999873321 112221111 00
Q ss_pred HHHHHHHHhCCCCccCC-HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccccc---cC----
Q 041079 209 RQELLSKLLKHENVILD-IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQVLR---NC---- 280 (945)
Q Consensus 209 ~~~ll~~l~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~---~~---- 280 (945)
.. ....... ...+......++.+|++| ...+....+...+. ....++|.||....... ..
T Consensus 247 ------~~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 247 ------KY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ------cc--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 00 0000111 222222334678899999 23333334444443 23456666665443100 00
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhh
Q 041079 281 SVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 281 ~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.-...+.++..+.++..+++...+
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112579999999999999998654
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.38 E-value=0.0032 Score=66.35 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
.-+++.|.+...++|.+.+.. .+-++|+|++|.||||||+.++...... .+.+. ..+....
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~ 83 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM 83 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh
Confidence 335677777777777654321 3459999999999999999999876432 23332 1111111
Q ss_pred cCCHHHHHHHHHHHHhCCCCccCCHHHHHHH-HcCCCcEEEEecCCChH-------------HHHHHhcCCCC--CCCCC
Q 041079 202 SGGLACLRQELLSKLLKHENVILDIDLNFRR-LSRMKVLIVFDDVTCFR-------------QIKSLIRSPDW--FMADS 265 (945)
Q Consensus 202 ~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~--~~~gs 265 (945)
......+. + ..+.+. -...+.++++|+++... ....+...+.. .....
T Consensus 84 --~~~~~~~~-i-------------~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 --YVGESERA-V-------------RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp --TTHHHHHH-H-------------HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred --hhhHHHHH-H-------------HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 11111111 1 111111 13457899999986420 11222221111 11233
Q ss_pred eEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 266 RIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 266 ~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
-++.+|...+++.. ...+..+.++..+.++-.++|..+.
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45567776655432 1356788999999999999998765
No 233
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00063 Score=68.21 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCCCccchHH----HHHHHHhhhccc------CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 137 NNNQLVGVES----RVVAIQSLLGAA------PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 137 ~~~~~vGr~~----~l~~l~~~L~~~------~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..++|++.+. .++.+.+++... +.+.|+|.+|+|||+||+++++....+...++|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3455665442 334444444432 78999999999999999999998866655556654
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.35 E-value=0.0051 Score=64.00 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=79.6
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+...+++.++... .+-+.|+|++|.||||||+.++..... ..+.+. ........
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH
Confidence 345678877666666554321 234899999999999999999987652 223332 11111110
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh----------------HHHHHHhcCCCCC--CC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF----------------RQIKSLIRSPDWF--MA 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~ 263 (945)
.+. ..+. ...+.+.. .....++++|+++.. ..+..+...+... ..
T Consensus 90 ~~~--~~~~--------------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 90 VGV--GAAR--------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp TTH--HHHH--------------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred hhH--HHHH--------------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 110 0000 11112222 234679999998422 0122333222111 11
Q ss_pred CCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 264 DSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
...++.||...+++. ....+..+.++..+.++-.+++..++
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 223445666554432 11345688999999998888887665
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.32 E-value=0.0028 Score=67.06 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+...+++.++... .+-+.|+|++|+||||||+.++..... ..+.+. ........
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 113 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 113 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHST
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHH
Confidence 456788888777766654432 234899999999999999999987652 223332 11111110
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHH-cCCCcEEEEecCCCh----------------HHHHHHhcCCCCCC--C
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRL-SRMKVLIVFDDVTCF----------------RQIKSLIRSPDWFM--A 263 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~--~ 263 (945)
.+. .... ...+.+.. ...+.++|+|+++.. ..+..+...+.... .
T Consensus 114 ~~~--~~~~--------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 114 VGV--GAAR--------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp TTH--HHHH--------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred hhH--HHHH--------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 000 0000 11111222 245679999998421 11233333222111 1
Q ss_pred CCeEEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 264 DSRIIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 264 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
...++.||...+++. ....+..++++..+.++-.+++..++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 223445666554432 11345688999999998888887665
No 236
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.30 E-value=0.00015 Score=70.29 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCC-CCc-cCcccCCC----CCCCEEECCCC-CCc--ccch
Q 041079 664 NNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCG-VTR-LPESLGRL----SLLEELDLRRN-NFE--RVPE 734 (945)
Q Consensus 664 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~-lp~~l~~l----~~L~~L~Ls~n-~l~--~lp~ 734 (945)
-+|+.|++++|. +...+. ..+.++++|+.|+|++|. +++ -...+..+ ++|++|+|++| +++ .+ .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-I 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-H
T ss_pred ceEeEEeCcCCC-ccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-H
Confidence 356777777765 222221 124567788888888874 553 22233333 46888888888 476 33 3
Q ss_pred hhhCCCCCCEEeeccCCCCcc
Q 041079 735 SIIQLSKLNYLYLSYCQRLQS 755 (945)
Q Consensus 735 ~i~~l~~L~~L~L~~c~~l~~ 755 (945)
.+.++++|++|+|++|+.++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 566788888888888876553
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=0.0025 Score=74.12 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=78.3
Q ss_pred CccchHHHHHHHHhhhcc--------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 140 QLVGVESRVVAIQSLLGA--------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~--------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
+++|.+...+.+.+.+.. ...+.++|++|+||||||+.++......|-.+. +...... ..+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~----~~~~~~~----~~~~g~ 153 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS----LGGVRDE----SEIRGH 153 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC----CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE----ecccchh----hhhhhH
Confidence 378888777776554332 568999999999999999999998754432111 1110000 000000
Q ss_pred HHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCChHH------HHHHhcCCCCCC---------------CCCeEEEE
Q 041079 212 LLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCFRQ------IKSLIRSPDWFM---------------ADSRIIIT 270 (945)
Q Consensus 212 ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~------l~~l~~~~~~~~---------------~gs~IIiT 270 (945)
....++. ................-+++||+++.... ...++..++... ....||.|
T Consensus 154 ~~~~ig~---~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 154 RRTYVGA---MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp -------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred HHHHhcc---CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 0000000 00011111122222334888999975421 233333332110 23456666
Q ss_pred ecCccccc-c-CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 271 TRNKQVLR-N-CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 271 TR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
|....... . ..-..++++++++.++-.+++..+.
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66543211 0 0112478999999999999988765
No 238
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.27 E-value=9.8e-05 Score=69.73 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 139 NQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..++|++..++++.+.+.. ..-|.|+|.+|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4678999888888887654 56688999999999999999987543
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.23 E-value=0.00097 Score=71.22 Aligned_cols=28 Identities=36% Similarity=0.735 Sum_probs=24.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.+.+.++|++|+|||+||+++++.....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999987443
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.22 E-value=0.0014 Score=78.84 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=95.8
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
.+++.|.+..+++|.+.+.. .+-|.++|++|.|||+||++++++....| +..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhccc
Confidence 35688899888888776531 56899999999999999999998765432 322222211110
Q ss_pred CC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh-------------HHHHHHhcCCCCC--CCCCe
Q 041079 203 GG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF-------------RQIKSLIRSPDWF--MADSR 266 (945)
Q Consensus 203 ~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs~ 266 (945)
.+ .....+.+ +.......+.+|++|+++.. ..+..|+...+.. ..+..
T Consensus 279 ~gese~~lr~l----------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 279 AGESESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp TTHHHHHHHHH----------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred chHHHHHHHHH----------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 11111222 22233467899999998532 1122333222111 12334
Q ss_pred EEEEecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhhhcCCC-CCccHHHHHHHHHHHhcCCc
Q 041079 267 IIITTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHAFKQNH-PDVGYEELSSRVIQYAQGVP 329 (945)
Q Consensus 267 IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 329 (945)
||.||...+.+. ....+..++++..+.++-.++|..+.-+... .+.+ ..++++.+.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 555665443221 1135678999999999999999877633221 2223 335666666653
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00056 Score=64.91 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 141 LVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
++|.+.+.-.....+ ....++|+|..|.|||||++.++......=...+++.
T Consensus 20 ~~g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 20 LGTENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSCCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcCccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 445554433322222 4779999999999999999999997754311255553
No 242
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.15 E-value=0.0031 Score=71.82 Aligned_cols=46 Identities=28% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHhhhcc-------cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 138 NNQLVGVESRVVAIQSLLGA-------APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~-------~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.++|.+..++.+..++.. .+-+.++|++|.|||++|+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 47899999988876655533 46799999999999999999998765
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.13 E-value=0.00028 Score=74.27 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 138 NNQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.++|.+..+.++.+.+.. ...|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999888887765543 56788999999999999999998654
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.00092 Score=81.60 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=83.3
Q ss_pred CCccchHHHHHHHHhhhccc-----------CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHH
Q 041079 139 NQLVGVESRVVAIQSLLGAA-----------PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLAC 207 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~~-----------~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~ 207 (945)
..++|.+..++.+...+... ..+.++|++|+|||++|+++++.....-...+.+ +..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 46899999888887776541 1699999999999999999999874433333444 333332221111
Q ss_pred HHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCC-----------CCCCCeEEEEecCc
Q 041079 208 LRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDW-----------FMADSRIIITTRNK 274 (945)
Q Consensus 208 l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gs~IIiTTR~~ 274 (945)
...+ ...++ ....-+|+||+++.. +....|+..+.. .....+||+||...
T Consensus 568 -~~~l-------------~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 -GGQL-------------TEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ----C-------------HHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -cchh-------------hHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0000 11111 123458999999653 223333322111 12356888888731
Q ss_pred c-------------ccc--cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 275 Q-------------VLR--NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 275 ~-------------v~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
. +.. ....+.++.+.+++.++-.+++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 000 01234688999999998888877654
No 245
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.0011 Score=70.93 Aligned_cols=144 Identities=8% Similarity=0.086 Sum_probs=86.7
Q ss_pred chHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhh---ccccceEEEEechhhhhccCCHHHHHHHHHHHHh
Q 041079 143 GVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKIS---SDFEGSCFLENVREESQRSGGLACLRQELLSKLL 217 (945)
Q Consensus 143 Gr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~ 217 (945)
|-+..++.+.+.+.. .+...++|++|.||||+|+.+++... ........+... ... .++..+.. +.....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~-~~id~ir~-li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GEN-IGIDDIRT-IKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSC-BCHHHHHH-HHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCC-CCHHHHHH-HHHHHh
Confidence 344556666666665 45788999999999999999987531 123344444311 001 33333332 433332
Q ss_pred CCCCccCCHHHHHHHHcCCCcEEEEecCCCh--HHHHHHhcCCCCCCCCCeEEEEecCc-cccccCCcceEEEcCCCCHH
Q 041079 218 KHENVILDIDLNFRRLSRMKVLIVFDDVTCF--RQIKSLIRSPDWFMADSRIIITTRNK-QVLRNCSVKEIYEMKELRDD 294 (945)
Q Consensus 218 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~~~~~~~l~~L~~~ 294 (945)
... ..+++-++|+|+++.. ...++|+..+....+.+.+|++|.+. .+....... ++++++++++
T Consensus 76 ~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 76 YSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp SCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred hcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 111 1245678999999763 34555555444334677888777544 343333333 8999999999
Q ss_pred HHHHHHHHhh
Q 041079 295 HALELFSRHA 304 (945)
Q Consensus 295 ea~~Lf~~~a 304 (945)
+..+.+...+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888765
No 246
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.01 E-value=0.00052 Score=73.69 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 139 NQLVGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+.++|++..++++.+.+.. ...|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4589999888888777654 5678899999999999999999864
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.01 E-value=0.004 Score=71.07 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=83.7
Q ss_pred CCCCccchHHHHHHHHhhhcc--------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
..++++|.+..++++.++... .+-|.|+|++|.||||||++++...... .+.+. ..+.....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh
Confidence 556788988877777655422 3458999999999999999999876422 22332 22211110
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHHHHHHc----CCCcEEEEecCCCh----------------HHHHHHhcCCCCC-
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLNFRRLS----RMKVLIVFDDVTCF----------------RQIKSLIRSPDWF- 261 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~- 261 (945)
.+. . ...+...++ ..+.++++|+++.. ..+..++..+..+
T Consensus 105 ~g~--~-----------------~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 105 VGV--G-----------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp TTH--H-----------------HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred hhh--H-----------------HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 110 0 111122222 23579999998531 1233444333221
Q ss_pred -CCCCeEEEEecCcccccc-----CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 262 -MADSRIIITTRNKQVLRN-----CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
..+..++.||...+.+.. ...+..+.++..+.++-.+++..++
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 123455556665544321 1245688999999999999988765
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.0052 Score=74.95 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQR 201 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 201 (945)
..++++|.+..+++|.+++.. ...|.|+|.+|+||||||+.++......| +.+ +..+....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 346789999998888877642 46799999999999999999998764433 222 22111111
Q ss_pred cCC-HHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCCcEEEEecCCCh----------------HHHHHHhcCCCCCCCC
Q 041079 202 SGG-LACLRQELLSKLLKHENVILDIDLNFRRLSRMKVLIVFDDVTCF----------------RQIKSLIRSPDWFMAD 264 (945)
Q Consensus 202 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~~~g 264 (945)
..+ ...... ..+.........++++|+++.. .++-.+...... ..+
T Consensus 278 ~~g~~~~~l~----------------~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~ 340 (806)
T 1ypw_A 278 LAGESESNLR----------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAH 340 (806)
T ss_dssp STTHHHHHHH----------------HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSC
T ss_pred hhhhHHHHHH----------------HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-ccc
Confidence 010 111111 1122223346789999998321 112233332221 234
Q ss_pred CeEEEEecCccccc----c-CCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 265 SRIIITTRNKQVLR----N-CSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 265 s~IIiTTR~~~v~~----~-~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
..+|.||....-+. . ......+.+...+.++-.+++..++
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 45666665543221 1 1234578888899999999988765
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.62 E-value=0.0061 Score=67.59 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999774
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.0095 Score=63.85 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCccch----HHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhh-ccccceEEEE
Q 041079 138 NNQLVGV----ESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKIS-SDFEGSCFLE 193 (945)
Q Consensus 138 ~~~~vGr----~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 193 (945)
.++|++. ...++.+.+++.. ...+.|+|.+|+|||+||.++++... ..-..+.++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456643 3344445555543 47899999999999999999999876 5444455553
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.08 E-value=0.0055 Score=74.78 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=36.5
Q ss_pred CCccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 139 NQLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..++|.+..++.+...+.. ...+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4588999888888776653 1268999999999999999999977
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.91 E-value=0.0042 Score=67.52 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred CCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.+.++|++..++.+...+.....+.++|.+|+|||+||+.+++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999999888877777789999999999999999999977544
No 253
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.78 E-value=0.021 Score=57.61 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=26.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..++.|.|.+|+||||||+.++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 77999999999999999999988 2223566665
No 254
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.76 E-value=0.011 Score=62.58 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 567889999999999999999886
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.74 E-value=0.042 Score=53.89 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=59.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHh--CCCC--ccC----C----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLL--KHEN--VIL----D---- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~--~~~~--~~~----~---- 225 (945)
...|-|++-.|.||||.|-.++-+...+=-.+.++.-.... .. .+-..+.+.+--.+. +... ... +
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 34677777788999999999988765554445555322210 11 222223222200000 0000 000 0
Q ss_pred ---HHHHHHHHcCC-CcEEEEecCC--------ChHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 ---IDLNFRRLSRM-KVLIVFDDVT--------CFRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 ---~~~l~~~L~~k-r~LlVLDdv~--------~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
....++.+... -=|||||++. +.+++-.++... .....||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCCc
Confidence 34445555444 4599999973 233444444333 25778999999863
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.66 E-value=0.078 Score=56.41 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=27.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+|+|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 46899999999999999999998776543333333
No 257
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.56 E-value=0.02 Score=52.58 Aligned_cols=53 Identities=25% Similarity=0.207 Sum_probs=38.1
Q ss_pred EEeccCCCCC--ccCcccCCCCCCCEEECCCCCCcccch-hhhCCCCCCEEeeccCCC
Q 041079 698 SLCLHNCGVT--RLPESLGRLSLLEELDLRRNNFERVPE-SIIQLSKLNYLYLSYCQR 752 (945)
Q Consensus 698 ~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 752 (945)
.++.++++++ .+|..+. ++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5667777777 7776442 468888888888887775 456677888888887763
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.54 E-value=0.011 Score=72.92 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=37.2
Q ss_pred CccchHHHHHHHHhhhcc-----------cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 140 QLVGVESRVVAIQSLLGA-----------APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 140 ~~vGr~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.++|.+..++.+...+.. ...+.|+|.+|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 478999988888777654 147899999999999999999997744
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.52 E-value=0.007 Score=65.52 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=29.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcccc-ceEEEEechh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFE-GSCFLENVRE 197 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~ 197 (945)
.+.++|+|.+|.|||||++.+.+.+..... ..+.+..+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 789999999999999999999987655433 2333444543
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.51 E-value=0.037 Score=61.89 Aligned_cols=40 Identities=25% Similarity=0.578 Sum_probs=30.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVRE 197 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 197 (945)
.+.++|+|.+|+||||||..+......++..++-+..+.+
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGe 190 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGE 190 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESS
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeecc
Confidence 6679999999999999999999877665544443334433
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.41 E-value=0.022 Score=68.39 Aligned_cols=147 Identities=16% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhcc
Q 041079 138 NNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRS 202 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 202 (945)
-+++.|.+...++|.+.+.. .+-|.++|++|.|||.+|++++++....| +. +.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~-v~------ 543 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS-IK------ 543 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE-CC------
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE-ec------
Confidence 35677899888888876542 45688999999999999999999765332 22 10
Q ss_pred CCHHHHHHHHHHHHhCCCCccCCHHHH-HHHHcCCCcEEEEecCCChH----------------HHHHHhcCCCCCCCCC
Q 041079 203 GGLACLRQELLSKLLKHENVILDIDLN-FRRLSRMKVLIVFDDVTCFR----------------QIKSLIRSPDWFMADS 265 (945)
Q Consensus 203 ~~l~~l~~~ll~~l~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~~gs 265 (945)
.. ++++...++. ......+ ...-+..+.+|++|+++..- .+..|+..++......
T Consensus 544 --~~----~l~s~~vGes--e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 544 --GP----ELLTMWFGES--EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp --HH----HHHTTTCSSC--HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred --cc----hhhccccchH--HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 01 1111111100 0001111 22224578999999986320 1334443333222222
Q ss_pred -eEEE-EecCccccc-----cCCcceEEEcCCCCHHHHHHHHHHhh
Q 041079 266 -RIII-TTRNKQVLR-----NCSVKEIYEMKELRDDHALELFSRHA 304 (945)
Q Consensus 266 -~IIi-TTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (945)
.++| ||...+.+. .-..+..+.++..+.++-.++|..+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2333 554333221 11356788888888888888887665
No 262
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.40 E-value=0.0065 Score=59.94 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=35.3
Q ss_pred CCCCCCEEeccCCCCCc-----cCcccCCCCCCCEEECCCC---CCc-----ccchhhhCCCCCCEEeeccC
Q 041079 692 GLHSLKSLCLHNCGVTR-----LPESLGRLSLLEELDLRRN---NFE-----RVPESIIQLSKLNYLYLSYC 750 (945)
Q Consensus 692 ~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n---~l~-----~lp~~i~~l~~L~~L~L~~c 750 (945)
.-+.|+.|+|++|.++. +-..+..-+.|++|+|++| .+. .+-..+..-+.|+.|+++.|
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 34567777777777662 4455666666777777654 222 23344555666777777654
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.0084 Score=58.41 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.22 E-value=0.025 Score=56.43 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhcc-----cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 144 VESRVVAIQSLLGA-----APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 144 r~~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
|+..++++.+.+.. ..+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445555444432 56899999999999999999988764
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.05 E-value=0.013 Score=56.63 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.94 E-value=0.057 Score=58.83 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=65.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceE-EEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSC-FLENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~ 235 (945)
..+++|.|+.|.||||+.+.+...+.......+ .+.+..+.... .. . .++.+.... ..... ...+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~-~----~~v~q~~~~-~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SK-K----CLVNQREVH-RDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CS-S----SEEEEEEBT-TTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-cc-c----cceeeeeec-cccCCHHHHHHHHhhh
Confidence 669999999999999999999887655433333 22221110000 00 0 000000000 01112 5678888899
Q ss_pred CCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCccc
Q 041079 236 MKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQV 276 (945)
Q Consensus 236 kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 276 (945)
.+=+|++|.+.+.+.++.+.... ..|..||+||-+...
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 99999999999887766654432 246678888876644
No 267
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.91 E-value=0.16 Score=55.17 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=35.8
Q ss_pred HHHHHHhhhc-c----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 147 RVVAIQSLLG-A----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 147 ~l~~l~~~L~-~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
-..+|...|. . ..++.|.|.+|+||||||..++......=..++|+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3455666666 3 679999999999999999999987655434566775
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.88 E-value=0.015 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998773
No 269
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.88 E-value=0.12 Score=57.66 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=37.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhhccCCHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVREESQRSGGLACLRQELLSK 215 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~l~~l~~~ll~~ 215 (945)
.+.++|.|.+|+|||+|+..+++.+.... +.++| ..+.+..+ ....+.+++...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~-~~iGER~r---Ev~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF-AGVGERTR---EGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEE-EEESCCHH---HHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEE-EECCCcch---HHHHHHHHhhhc
Confidence 78999999999999999999999875443 33444 44544332 345566665543
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.87 E-value=0.015 Score=56.93 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.83 E-value=0.019 Score=63.09 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=34.1
Q ss_pred ccchHHHHHHHHhhhc-----------------ccCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 141 LVGVESRVVAIQSLLG-----------------AAPLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~-----------------~~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
++|.+..++.+...+. ..+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766662 146789999999999999999999874
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.76 E-value=0.064 Score=57.55 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=27.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
.++|+|+|.+|+||||++..++..+...-..+.++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56899999999999999999998776543333443
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.71 E-value=0.016 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 54
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.66 E-value=0.016 Score=66.21 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 139 NQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+.++|.+..++.+...+....-|.|+|.+|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 458999999998888777788899999999999999999998663
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.57 E-value=0.031 Score=54.86 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|.|.|++|.||||+|+.++..+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999987543
No 276
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.51 E-value=0.022 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|+|.|++|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 277
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.51 E-value=0.017 Score=56.99 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=63.9
Q ss_pred ccCCCCCcEEEcccCCCCccCccccccccccCCCCCCCEEeccCCCCCc-----cCcccCCCCCCCEEECCCCCCc----
Q 041079 660 IVRSNNFRFLSFRESRGDKQMGLSLLISLSSDGLHSLKSLCLHNCGVTR-----LPESLGRLSLLEELDLRRNNFE---- 730 (945)
Q Consensus 660 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~---- 730 (945)
+.+-+.|+.|+|+++..+...+. ..+...+..-+.|+.|+|++|.+.+ +-..+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga-~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERI-RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHH-HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHH-HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34556788888887533322111 1223345566789999999999983 5556666788999999999987
Q ss_pred -ccchhhhCCCCCCEEeeccCC
Q 041079 731 -RVPESIIQLSKLNYLYLSYCQ 751 (945)
Q Consensus 731 -~lp~~i~~l~~L~~L~L~~c~ 751 (945)
.+-..+..-+.|+.|+|++|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhhCCceeEEECCCCc
Confidence 444566777789999998764
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.49 E-value=0.082 Score=59.54 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=28.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 5699999999999999999999877543 3455553
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.44 E-value=0.06 Score=53.76 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=45.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEEEe---chhhhhccCCHHHHHHHHHHHHhCCCCccCC---HHHHHHHH
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLEN---VREESQRSGGLACLRQELLSKLLKHENVILD---IDLNFRRL 233 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~l~~~L 233 (945)
+|.|.|+||+||||.|+.++.++. ...+.. .++.......+....+.++ .......+ ...+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~----~~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYM----ERGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHH----HHTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHH----hcCCcCCHHHHHHHHHHhh
Confidence 578999999999999999998752 223321 1111111011111222221 11222222 56677777
Q ss_pred cCCCcEEEEecC-CChHHHHHH
Q 041079 234 SRMKVLIVFDDV-TCFRQIKSL 254 (945)
Q Consensus 234 ~~kr~LlVLDdv-~~~~~l~~l 254 (945)
..... +|||+. .+..|.+.|
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHH
Confidence 65554 688997 445565544
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.43 E-value=0.11 Score=57.83 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=27.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
.++|.++|.+|+||||++..++..++.+=..+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56999999999999999999998776543334444
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.41 E-value=0.024 Score=61.13 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
...|.|+|++|.||||+|+.++..+...|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34589999999999999999998776554
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.35 E-value=0.02 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 283
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.34 E-value=0.012 Score=63.65 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=29.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEEechh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLENVRE 197 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~ 197 (945)
.+.++|+|.+|+|||+|+..+++.+.... +..|.+..+.+
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 78999999999999999999999775433 33334444543
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.33 E-value=0.031 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.5
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...+|+|.|++|+||||+|+.+++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999876
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.32 E-value=0.035 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|..|.|||||++.+...+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 66999999999999999999998765
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.036 Score=54.48 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.30 E-value=0.021 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+.|.|.|++|+||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.24 E-value=0.023 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 289
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.19 E-value=0.12 Score=54.83 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=27.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458999999999999999999987765433444443
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.14 E-value=0.17 Score=56.39 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+|.++|.+|+||||++..++..+..+=..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56999999999999999999998776653334444
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.14 E-value=0.071 Score=57.42 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=37.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
..++.|.|.+|+||||+|..++.....+=..++|+.. + .....+...+++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------E-ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------E-MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------S-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------C-CCHHHHHHHHHHHh
Confidence 7899999999999999999998876543334556542 2 44556666666544
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.025 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.11 E-value=0.027 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.11 E-value=0.026 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.10 E-value=0.03 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999997753
No 296
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.10 E-value=0.29 Score=53.09 Aligned_cols=154 Identities=9% Similarity=-0.022 Sum_probs=94.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS-SDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRM 236 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 236 (945)
.++..++|..|.||++.|+.+...+. ..|+....+. .. .. .++..+...+.. .-+-++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~~~----------------~plf~~ 76 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PN-TDWNAIFSLCQA----------------MSLFAS 76 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TT-CCHHHHHHHHHH----------------HHHCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CC-CCHHHHHHHhcC----------------cCCccC
Confidence 67899999999999999999988664 3453321121 11 11 444444433211 113456
Q ss_pred CcEEEEecCCC---hHHHHHHhcCCCCCCCCCeEEEEecC-------cccccc-CCcceEEEcCCCCHHHHHHHHHHhhh
Q 041079 237 KVLIVFDDVTC---FRQIKSLIRSPDWFMADSRIIITTRN-------KQVLRN-CSVKEIYEMKELRDDHALELFSRHAF 305 (945)
Q Consensus 237 r~LlVLDdv~~---~~~l~~l~~~~~~~~~gs~IIiTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af 305 (945)
+-++|+|+++. .+..+.|...+....+++.+|++|.. ..+... .....+++..+++.++..+.+...+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 77889999865 24445554443333467788777643 123222 22346899999999999888877663
Q ss_pred cCCCCCccHHHHHHHHHHHhcCCcchHHH
Q 041079 306 KQNHPDVGYEELSSRVIQYAQGVPLALEI 334 (945)
Q Consensus 306 ~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 334 (945)
..+. .-..+.+..+++.++|.+.++..
T Consensus 157 ~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 157 QLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 3221 11235677888889998876643
No 297
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.09 E-value=0.11 Score=55.60 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=36.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSK 215 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~ 215 (945)
..++.|.|.+|+||||+|..++.....+-..++|+.. + .....+...+++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------E-MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------S-SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------C-CCHHHHHHHHHHH
Confidence 7899999999999999999998766544356667642 1 3445555555544
No 298
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.08 E-value=0.025 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.08 E-value=0.03 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999876
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.07 E-value=0.043 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=24.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|+.|.||||+|+.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999999999875
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.05 E-value=0.042 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|+.|.||||+|+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999999999876
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.04 E-value=0.021 Score=55.89 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=24.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
|.|.|.|+.|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 67899999999999999999887654443
No 303
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.03 E-value=0.094 Score=58.78 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=37.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELLS 214 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll~ 214 (945)
.+.++|.|..|+|||+|+..+.+.+... -+.++|+ .+.+.. .....+.+++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~---rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCS---HHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCc---HHHHHHHHhhhc
Confidence 7789999999999999999999987543 3445554 554433 234555555544
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.01 E-value=0.026 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.00 E-value=0.041 Score=54.20 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhcc---cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 144 VESRVVAIQSLLGA---APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 144 r~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
...-+..+..++.. .+.+.|+|++|.||||+|.++++.+..
T Consensus 41 ~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33445556666555 347999999999999999999998753
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.99 E-value=0.14 Score=57.40 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.++|.++|.||+||||+|..++..+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999887765
No 307
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.89 E-value=0.049 Score=60.79 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHhhhc----------------ccCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 139 NQLVGVESRVVAIQSLLG----------------AAPLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 139 ~~~vGr~~~l~~l~~~L~----------------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
+.++|.+...+.+...+. ..+-|.++|++|+||||+|++++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 346777766666654441 145789999999999999999999875433
No 308
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.79 E-value=0.032 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|++|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999999875
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.79 E-value=0.037 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|++|+||||+|+.+..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.75 E-value=0.032 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|.|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.74 E-value=0.033 Score=57.79 Aligned_cols=25 Identities=32% Similarity=0.229 Sum_probs=22.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998763
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.027 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=18.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|.|.|++|+||||+|+.+..++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988754
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.62 E-value=0.06 Score=53.96 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..+|+|.|++|+||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999876543
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.58 E-value=0.23 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=24.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+++|+|.+|+||||++..++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999987763
No 315
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.57 E-value=0.043 Score=52.62 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.|+|.|++|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.55 E-value=0.039 Score=54.30 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+|+|.|++|+||||+|+.++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.55 E-value=0.041 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
...|+|.|++|+||||+|+.+..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.54 E-value=0.062 Score=53.66 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..|.|.|++|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876543
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.52 E-value=0.039 Score=54.13 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=24.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
++++|.|+.|+|||||++.+...+...|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 67999999999999999999987654443
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.48 E-value=0.035 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=23.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 67899999999999999999988763
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.48 E-value=0.043 Score=53.09 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998865
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.44 E-value=0.055 Score=53.10 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=24.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+++|.|+.|.|||||++.++.. ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999763 33445553
No 323
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.42 E-value=0.036 Score=60.47 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCCCccchHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 137 NNNQLVGVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+.++|.+..++.+...+.. ..-|.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 446799998866655433322 45689999999999999999998764
No 324
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.40 E-value=0.19 Score=53.39 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=27.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 5699999999999999999999877643 3444443
No 325
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.40 E-value=0.043 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+|+|+|+.|+|||||++.+...+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 678999999999999999999987643
No 326
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.39 E-value=0.048 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|+|.|++|+||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.38 E-value=0.078 Score=50.88 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.++++|.|..|+|||||+..+...+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999987655
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.37 E-value=0.044 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..|+|.|++|+||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 329
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.28 E-value=0.053 Score=54.27 Aligned_cols=28 Identities=11% Similarity=0.308 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999876543
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.23 E-value=0.051 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|+|+.|.||||+|+.+...+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988653
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.21 E-value=0.32 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|..|.|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.21 E-value=0.051 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999774
No 333
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.14 E-value=0.1 Score=52.42 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.2
Q ss_pred chHHHHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 143 GVESRVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 143 Gr~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
+.+...+++...+.. .+.|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 444555555555533 7789999999999999999998876544
No 334
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.13 E-value=0.072 Score=62.84 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=43.0
Q ss_pred CCCCccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 137 NNNQLVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..+.++|.+..++.+...+.....+.|+|.+|+||||||+.++..+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34568999999999988888888999999999999999999999765443
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.13 E-value=0.051 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.13 E-value=0.051 Score=53.34 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|++|+||||+|+.+..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 337
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.09 E-value=0.12 Score=52.24 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHhhhcc--cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 147 RVVAIQSLLGA--APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 147 ~l~~l~~~L~~--~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+.+...+.. ...|+|+|.+|+|||||+..+.......
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444444433 6789999999999999999998865444
No 338
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.08 E-value=0.37 Score=51.74 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+++|+|+.|+||||+++.++..+...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5699999999999999999999876544
No 339
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.04 E-value=0.62 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc-cceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF-EGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~ 193 (945)
..++.|.|.+|+||||||..++..+.... ..++|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 77999999999999999999998765432 2566654
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.92 E-value=0.077 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...|+|.|++|+||||+|+.+.+++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998865
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.90 E-value=0.43 Score=51.78 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=27.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 4699999999999999999999877644 3444443
No 342
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.89 E-value=0.33 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+||.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998876
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.86 E-value=0.057 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
No 344
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.86 E-value=0.064 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998664
No 345
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.85 E-value=0.058 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5689999999999999999998764
No 346
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.83 E-value=0.062 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|+|++|.|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999776
No 347
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.83 E-value=0.093 Score=55.42 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+|+|.|..|+||||||+.+...+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999887654
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.83 E-value=0.058 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998866
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.80 E-value=0.062 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|+|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999998654
No 350
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.78 E-value=0.19 Score=56.42 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=49.1
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|..|+|||+||. .+.++. .-+..|.+..+.+... .+..+.+++...-..... ..++
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~---Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQS---TVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHH---HHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcch---HHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 7789999999999999965 566654 3444444445544332 244455554432111111 0111
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++.+||++||+....
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 11222333 5789999999985443
No 351
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.76 E-value=0.057 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...|.|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999865
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.75 E-value=0.056 Score=53.76 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|++|+||||+|+.+++++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998864
No 353
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.75 E-value=0.069 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|.|.|++|+||||+|+.+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998865
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.73 E-value=0.43 Score=53.65 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=28.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..++.|.|.+|+||||+|..++.....+=..++|+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 779999999999999999999987655423455553
No 355
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.70 E-value=0.22 Score=54.00 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=34.9
Q ss_pred HHHHHhhhc-c----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 148 VVAIQSLLG-A----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 148 l~~l~~~L~-~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
...|..+|. . .+++.|+|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445555666 2 789999999999999999999876654444567775
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.64 E-value=0.065 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|+.|.||||+|+.+...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998864
No 357
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.63 E-value=0.22 Score=54.10 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=35.9
Q ss_pred HHHHHHHhhhc-c----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 146 SRVVAIQSLLG-A----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 146 ~~l~~l~~~L~-~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.-...|..+|. . .+++.|.|.+|+||||||..++......-..++|+.
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33445555565 2 789999999999999999999887655444677776
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.62 E-value=0.14 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=27.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 679999999999999999999976544333455553
No 359
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.60 E-value=0.062 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|.|.|++|+||||+|+.+...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998754
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.59 E-value=0.06 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 361
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.57 E-value=0.18 Score=56.60 Aligned_cols=87 Identities=20% Similarity=0.118 Sum_probs=49.0
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|..|+|||+||. .++++. .-+..|.+..+.+... .+..+.+.+...-..... ..++
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~---Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKS---AIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHH---HHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcH---HHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 7889999999999999965 666654 3444444445544332 244455544432111110 0111
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++.+||++||+....
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 11222333 5789999999985443
No 362
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.57 E-value=0.07 Score=55.02 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|+|+|+.|.||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.50 E-value=0.047 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.+|+|.|+.|+||||+|+.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987753
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.49 E-value=0.07 Score=57.61 Aligned_cols=104 Identities=15% Similarity=0.047 Sum_probs=60.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCCHHHHHHHHcCCC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILDIDLNFRRLSRMK 237 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 237 (945)
...++|+|..|.|||||++.+...+.. -.+.+.+....+.... ... +.+ .+... ........+...|..++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~~---~~i--~~~~g-gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HHK---NYT--QLFFG-GNITSADCLKSCLRMRP 241 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SCS---SEE--EEECB-TTBCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cch---hEE--EEEeC-CChhHHHHHHHHhhhCC
Confidence 789999999999999999999876543 3566666543221100 000 000 00000 11112566777788888
Q ss_pred cEEEEecCCChHHHHHHhcCCCCCCCCC-eEEEEecCc
Q 041079 238 VLIVFDDVTCFRQIKSLIRSPDWFMADS-RIIITTRNK 274 (945)
Q Consensus 238 ~LlVLDdv~~~~~l~~l~~~~~~~~~gs-~IIiTTR~~ 274 (945)
=+|++|.+...+.++.+. ... .|. .+|+||-..
T Consensus 242 ~ilildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAG 275 (330)
T ss_dssp SEEEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECS
T ss_pred CEEEEcCCChHHHHHHHH-HHh---cCCCEEEEEEccc
Confidence 899999998765554433 221 232 366666544
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.49 E-value=0.07 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 366
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.45 E-value=0.078 Score=53.03 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|..|.|||||++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.44 E-value=0.15 Score=52.27 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=28.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..++.|.|.+|+||||||..++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 779999999999999999998876554444566664
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.40 E-value=0.074 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
.|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 369
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.37 E-value=0.21 Score=56.10 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=49.3
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhc------cccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISS------DFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~------~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~ 225 (945)
.+.++|.|..|+|||+||. .+.++... +-+..+.+..+.+... .+..+.+.+...-..... ..++
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHHhcCCcccceEEEECCCC
Confidence 7789999999999999964 66665542 2444455545554332 244444444431100000 0111
Q ss_pred -----------HHHHHHHH--cCCCcEEEEecCCCh
Q 041079 226 -----------IDLNFRRL--SRMKVLIVFDDVTCF 248 (945)
Q Consensus 226 -----------~~~l~~~L--~~kr~LlVLDdv~~~ 248 (945)
.-.+-+++ +++.+||++||+...
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 11122233 578999999998544
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.36 E-value=0.068 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|++|.||||+|+.+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 55899999999999999999988754
No 371
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.33 E-value=0.16 Score=51.80 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=28.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS------DFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 193 (945)
..+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 789999999999999999999885322 124566765
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.28 E-value=0.077 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.1
Q ss_pred cccCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 156 GAAPLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 156 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 337899999999999999999999875
No 373
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.25 E-value=0.057 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIF 179 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~ 179 (945)
..+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 5689999999999999999643
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.24 E-value=0.069 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.24 E-value=0.16 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+++|+|..|.|||||++.++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 77999999999999999999987543
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.21 E-value=0.075 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+|+|.|+.|.||||+|+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 568999999999999999999885
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.21 E-value=0.073 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.21 E-value=0.071 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
...|+|.|+.|+||||+|+.+.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 379
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.19 E-value=0.074 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|+|++|.||||+|+.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999987753
No 380
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.13 E-value=0.12 Score=53.60 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=65.9
Q ss_pred HHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-
Q 041079 147 RVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD- 225 (945)
Q Consensus 147 ~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~- 225 (945)
.++.+. +....+++|+|+.|.|||||++.+...+...+.+.+++.... .......... ++.+-.-. .....
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~v~q~~~g-l~~~~l 87 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----IVNQREVG-EDTKSF 87 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----EEEEEEBT-TTBSCH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----eeeHHHhC-CCHHHH
Confidence 444444 344779999999999999999999987655445555543210 0000000000 00000000 00012
Q ss_pred HHHHHHHHcCCCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 IDLNFRRLSRMKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 ~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
...+.+.|...+=+|++|...+.+....++... ..|.-|++||-+..
T Consensus 88 ~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 455666666677889999997766655444322 24667888887654
No 381
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.12 E-value=0.077 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.++|+|+.|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999988653
No 382
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.09 E-value=0.19 Score=45.91 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=25.2
Q ss_pred eEeecCCCCc--ccCccccCCccccEEeccccccccccCcc-cCCCCCCCEEeccCCC
Q 041079 574 KIILSGTAIE--ELPSSVGCLSGLVLLHLQACKMLKSLPCS-LFKLKSLEDLNLCRCS 628 (945)
Q Consensus 574 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~ 628 (945)
.++.+++.++ .+|..+. .+|++|+|++|. +..+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 3444444444 4454332 345555555554 3444432 3445556666665553
No 383
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.01 E-value=0.5 Score=55.00 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=60.7
Q ss_pred HHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCCccCC
Q 041079 146 SRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHENVILD 225 (945)
Q Consensus 146 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~ 225 (945)
...+.+...+ ..+++.|.|.+|.||||++..+...+...-..+....-.. .....+...+..... .
T Consensus 193 ~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~----------~Aa~~L~e~~~~~a~---T 258 (574)
T 3e1s_A 193 EQASVLDQLA-GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG----------KAARRLGEVTGRTAS---T 258 (574)
T ss_dssp HHHHHHHHHT-TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH----------HHHHHHHHHHTSCEE---E
T ss_pred HHHHHHHHHH-hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcH----------HHHHHhHhhhcccHH---H
Confidence 3444444433 3689999999999999999999887655433344332111 111222222211100 0
Q ss_pred HHHHHHHHc-------------CCCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 226 IDLNFRRLS-------------RMKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 226 ~~~l~~~L~-------------~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
+.+.+. .+.-+||+|.+.. ...+..+....+ .|.++|+.--..+
T Consensus 259 ---ih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 259 ---VHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ---HHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred ---HHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccc
Confidence 111110 1235899999854 456777776654 6777777654444
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.00 E-value=0.082 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998763
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.95 E-value=0.36 Score=52.94 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=60.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEE-EEechhhhhccCCHHHHHHHHHHHHhCCCCccCC-HHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCF-LENVREESQRSGGLACLRQELLSKLLKHENVILD-IDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~l~~~L~~ 235 (945)
..+++|+|+.|.||||+++.+...+.....+.+. +....+.... .... ++.+..-.. .... ...++..+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-~~~~-----~v~Q~~~g~-~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HKKS-----IVNQREVGE-DTKSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-CSSS-----EEEEEEBTT-TBSCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-cCce-----EEEeeecCC-CHHHHHHHHHHHhhh
Confidence 6789999999999999999999876554344443 3211000000 0000 000000000 0111 5667777777
Q ss_pred CCcEEEEecCCChHHHHHHhcCCCCCCCCCeEEEEecCc
Q 041079 236 MKVLIVFDDVTCFRQIKSLIRSPDWFMADSRIIITTRNK 274 (945)
Q Consensus 236 kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 274 (945)
.+=+|++|.+.+.+.+...+... ..|..|+.|+-..
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 88899999998777665544332 2465676666544
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.93 E-value=0.092 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.92 E-value=0.089 Score=52.71 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999999998765
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.85 E-value=0.097 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+|+|.|+.|.||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999987643
No 389
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.83 E-value=0.097 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
++|+|.|+.|.||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999998764
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.83 E-value=0.085 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|.|.|++|.||||+|+.+..++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988754
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.81 E-value=0.094 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.78 E-value=0.13 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|..|+||||+|+.+...+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34899999999999999999987665
No 393
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.75 E-value=0.23 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+.++|.|..|+|||+|+..++++..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 67889999999999999999988654
No 394
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.75 E-value=0.098 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|..|.||||||+.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6689999999999999999998865
No 395
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.73 E-value=0.14 Score=54.62 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++|+|.|-|||||||.|.-++.-+...=..+.-++
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 889999999999999999988877665444455554
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.71 E-value=0.1 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|.|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.67 E-value=0.15 Score=54.10 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=28.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..+|+|+|++|+||||+++.++..+... .+.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 5699999999999999999999877654 3444443
No 398
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.64 E-value=0.38 Score=52.46 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhc-c----cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 145 ESRVVAIQSLLG-A----APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 145 ~~~l~~l~~~L~-~----~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
..-...|..+|. . .+++.|.|.+|+||||||..++......-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334455556665 2 789999999999999999999887654444677775
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.62 E-value=0.64 Score=53.58 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=27.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+++|.|.+|+|||||++.++......=..++++
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 77999999999999999999998665432223454
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.59 E-value=0.1 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 401
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.52 E-value=0.57 Score=53.03 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcc-cCEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 146 SRVVAIQSLLGA-APLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 146 ~~l~~l~~~L~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
..++.+...+.. .+.+.|.|.+|.||||++.++...+...-.
T Consensus 32 ~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 32 NAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 334444444444 459999999999999999999987755443
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.51 E-value=0.21 Score=52.92 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=32.8
Q ss_pred HHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHhhcccc-ceEEEE
Q 041079 148 VVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKISSDFE-GSCFLE 193 (945)
Q Consensus 148 l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 193 (945)
++.+.--+....+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4444433334789999999999999999999987765433 355553
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.44 E-value=0.11 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|++|.||||+|+.++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.43 E-value=0.096 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998764
No 405
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.39 E-value=0.42 Score=53.86 Aligned_cols=52 Identities=19% Similarity=0.048 Sum_probs=36.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhhccCCHHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD-FEGSCFLENVREESQRSGGLACLRQELLSKL 216 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l 216 (945)
..++.|.|.+|+||||+|..++...... =..++|+.. + .....+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E-~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------E-MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------S-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------C-CCHHHHHHHHHHHH
Confidence 7799999999999999999999876543 234666542 1 34456666665544
No 406
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.37 E-value=0.23 Score=55.07 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=50.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcccc---ceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFE---GSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD---- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~---- 225 (945)
.+.++|.|..|+|||+|+..+++....+-+ .++.+..+.+... .+..+.+++...-..... ..++
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~---Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFE---EAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHH---HHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcH---HHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 677899999999999999999887654222 2444444544332 344555554432111110 0111
Q ss_pred -------HHHHHHHH---cCCCcEEEEecCCCh
Q 041079 226 -------IDLNFRRL---SRMKVLIVFDDVTCF 248 (945)
Q Consensus 226 -------~~~l~~~L---~~kr~LlVLDdv~~~ 248 (945)
.-.+-+++ +++.+|+++||+...
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 12233343 378999999998543
No 407
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.28 E-value=0.16 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=23.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|.|..|.|||||++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999999999866
No 408
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.27 E-value=0.21 Score=56.16 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=27.3
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhccccceEEEEechhh
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISSDFEGSCFLENVREE 198 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~ 198 (945)
.+.++|.|..|+|||+||. .+.++.. -+..|.+..+.+.
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR 202 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQK 202 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC
Confidence 6789999999999999965 6666542 4545444455443
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.24 E-value=0.16 Score=52.04 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=27.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh-ccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS-SDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 193 (945)
..+++|.|+.|.|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78999999999999999999985322 2334455553
No 410
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.22 E-value=0.22 Score=48.04 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.++++|.|..|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5689999999999999999999876543
No 411
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.16 E-value=0.12 Score=55.28 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+|+|.|..|.|||||++.+...+..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 679999999999999999999886653
No 412
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.13 E-value=0.11 Score=51.81 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=23.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+++|+|+.|.|||||++.+...+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 77999999999999999999988653
No 413
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.06 E-value=0.11 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998865
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.02 E-value=0.12 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+++|+|..|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998654
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.00 E-value=0.1 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998753
No 416
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.97 E-value=0.35 Score=53.96 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc---cceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC----
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF---EGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD---- 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F---~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~---- 225 (945)
.+.++|.|.+|+|||+|+..+++...... +.++.+..+.+... .+..+.+++...-..... ..++
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~---Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNE---EAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHH---HHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcH---HHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 77889999999999999999998654322 13444444544332 345555555433111111 0111
Q ss_pred -------HHHHHHHH---cCCCcEEEEecC
Q 041079 226 -------IDLNFRRL---SRMKVLIVFDDV 245 (945)
Q Consensus 226 -------~~~l~~~L---~~kr~LlVLDdv 245 (945)
.-.+-+++ +++.+|+++||+
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11222333 479999999997
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.96 E-value=0.24 Score=56.38 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++|.|+|.+|+||||++..++..+..+=..+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 458999999999999999999987765422344443
No 418
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.94 E-value=0.5 Score=52.50 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=27.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+++|+|.+|+||||++..++..+..+-..+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 56899999999999999999998876553333333
No 419
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.93 E-value=0.31 Score=53.13 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+|+|+|.+|+|||||+..+...+...-..+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 67899999999999999999988765443333333
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.88 E-value=0.12 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
.+|+|.|+.|.||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 421
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.84 E-value=1.3 Score=46.46 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=25.5
Q ss_pred cHHHHHHHHhccEEEEEecCCccchhhhHHHHHHHH
Q 041079 8 PESLVNAIEASAISVIIFSERYASSRWCLDELVKIL 43 (945)
Q Consensus 8 ~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~El~~i~ 43 (945)
-.++.++|+++.+.|.|+.-.-..+..+ .++.+++
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 3578899999999999998766666655 2444444
No 422
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.80 E-value=0.4 Score=47.62 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=25.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEG 188 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 188 (945)
..|+|-|..|+||||+++.+++++...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468999999999999999999988765543
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.78 E-value=0.084 Score=56.49 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 45899999999999999999998653
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.66 E-value=0.1 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.+++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999876543
No 425
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.62 E-value=0.22 Score=50.01 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47889999999999999999876554
No 426
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.59 E-value=0.2 Score=53.36 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.++|+|+|-||+||||+|..++..+...=..++.++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999987766533455554
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.47 E-value=0.13 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 428
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.41 E-value=0.15 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 67999999999999999999998765
No 429
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.37 E-value=0.39 Score=53.71 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=48.5
Q ss_pred cCEEEEEecCCCcHHHHHH-HHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC-----ccCC------
Q 041079 158 APLLGIWGIGGIGKTIIAR-AIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN-----VILD------ 225 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~-----~~~~------ 225 (945)
.+.++|.|..|+|||+||. .+.++ ..-+..|.+..+.+... .+..+.+++...-..... ..++
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR~~---ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQKAS---TISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCCHH---HHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCChH---HHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 7789999999999999974 56554 23444444444544332 244555554332111111 0111
Q ss_pred -----HHHHHHHH--cCCCcEEEEecCCChH
Q 041079 226 -----IDLNFRRL--SRMKVLIVFDDVTCFR 249 (945)
Q Consensus 226 -----~~~l~~~L--~~kr~LlVLDdv~~~~ 249 (945)
.-.+-+++ +++.+||++||+....
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 11122222 5899999999985443
No 430
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.37 E-value=0.24 Score=51.51 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
++|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 47888999999999999999988775533455554
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.29 E-value=0.24 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..++.+.|.||+||||++..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998776
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.15 E-value=0.14 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
++|.|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999999865
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.12 E-value=0.26 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|..|.|||||++.+...+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56999999999999999999988765
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.10 E-value=0.29 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.3
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
...++.|+|.+|+||||||..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3789999999999999999999876543
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.89 E-value=0.39 Score=52.02 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+|+|+|.+|+|||||+..+...+...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 7799999999999999999998766543
No 436
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.87 E-value=0.26 Score=52.19 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
..+++|+|.+|+||||++..++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877654
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.81 E-value=0.17 Score=53.42 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4688999999999999999999874
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.78 E-value=0.16 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 439
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.78 E-value=0.12 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=16.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHH-HHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIF-DKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~-~~~ 182 (945)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5789999999999999999998 654
No 440
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.77 E-value=0.39 Score=51.56 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=28.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc------ccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD------FEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 193 (945)
..++.|+|.+|+||||||..++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 7899999999999999999998765332 23566765
No 441
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.67 E-value=0.32 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.026 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.++.|+|..|+||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999987777654
No 442
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.58 E-value=0.66 Score=45.72 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
.|+|-|.-|+||||.++.+++.+..+-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887664444443
No 443
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.57 E-value=0.63 Score=46.21 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=54.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC--ccCCHHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN--VILDIDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~--~~~~~~~l~~~L~~ 235 (945)
..+..++|..|.||||.|...+.+...+-..++.+.-... .+ .+.. .+.+.++.... ...+...+.+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R-~ge~----~i~s~~g~~~~a~~~~~~~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NR-YSEE----DVVSHNGLKVKAVPVSASKDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGGGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Cc-chHH----HHHhhcCCeeEEeecCCHHHHHHHHhc
Confidence 5678899999999999999988877555444444432111 11 1212 22232221111 11112223333333
Q ss_pred CCcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 236 MKVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 236 kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
+--+|++|.+.- .++++.+....+ .|-.||+|-++.+
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 344999999732 334433322111 3678999999764
No 444
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.53 E-value=0.35 Score=51.17 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHhhhcc-cCEEEEEe---cCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 147 RVVAIQSLLGA-APLLGIWG---IGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 147 ~l~~l~~~L~~-~~~v~I~G---~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.+.++.+.+.. .++|+|++ -||+||||+|..++..+...=..+..++
T Consensus 22 ~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34445554444 67888886 8999999999999987765433445444
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.48 E-value=0.28 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.++++|+|++|.|||||++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6799999999999999999999764
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.41 E-value=0.38 Score=49.16 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=27.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh-hccccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI-SSDFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 193 (945)
..++.|.|.+|+||||+|..++... ...-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 7799999999999999999987543 33334455554
No 447
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.38 E-value=0.38 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=23.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..++.|+|.+|+|||||++.++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999876
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.37 E-value=0.22 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|+|.|+.|.||||+++.++.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998865
No 449
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.30 E-value=0.13 Score=54.46 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=20.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|+|.|..|.||||+|+.+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999988654
No 450
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.26 E-value=0.31 Score=51.39 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
++|+|.|-||+||||+|..++..+...=..+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57888999999999999999987765433344443
No 451
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.25 E-value=0.87 Score=47.11 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=23.4
Q ss_pred CcHHHHHHHHhccEEEEEecCCccchhhh
Q 041079 7 IPESLVNAIEASAISVIIFSERYASSRWC 35 (945)
Q Consensus 7 ~~~~l~~ai~~s~~~v~v~S~~y~~S~wc 35 (945)
...++.+.++.+.+.|.|+.-+-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 44689999999999999998776666555
No 452
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.20 E-value=0.23 Score=50.47 Aligned_cols=27 Identities=19% Similarity=0.462 Sum_probs=24.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
...|+|.|++|+||||+++.+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999998765
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.35 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 454
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.05 E-value=0.2 Score=60.95 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=40.0
Q ss_pred CCCCccchHHHHHHHHhhhcc---------------cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 137 NNNQLVGVESRVVAIQSLLGA---------------APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 137 ~~~~~vGr~~~l~~l~~~L~~---------------~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..++++|.+...+++.+.+.. .+.+.++|++|.||||||++++......|
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345678988888888877642 45688999999999999999999875443
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.04 E-value=0.23 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
No 456
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.04 E-value=0.25 Score=48.99 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..+|.|.|+.|.||||+|+.++.++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999874
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.92 E-value=0.18 Score=56.36 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=27.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
.++|+|+|.+|+||||+|..++.....+=..+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998765442334444
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.86 E-value=0.32 Score=51.50 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.1
Q ss_pred cccCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 156 GAAPLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 156 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
....+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 337899999999999999999998866
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.80 E-value=0.32 Score=55.88 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=25.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDF 186 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F 186 (945)
..+|.++|++|.||||+|++++..+...|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 56899999999999999999998775544
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.72 E-value=0.23 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+++|+|+.|.|||||.+.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 461
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.70 E-value=0.19 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=22.6
Q ss_pred ccCEEEEEecCCCcHHHHHHHHHHH
Q 041079 157 AAPLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 157 ~~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
...+++|+|..|.|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999999865
No 462
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.69 E-value=0.2 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999998764
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.67 E-value=0.5 Score=51.02 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..+++|+|.+|+|||||.+.+...+..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 779999999999999999999876544
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.66 E-value=0.17 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+.|.|.|.+|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.61 E-value=0.23 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
..|+|.|..|+||||+|+.+++++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
No 466
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.54 E-value=0.16 Score=59.45 Aligned_cols=45 Identities=18% Similarity=0.026 Sum_probs=35.5
Q ss_pred CCCccchHHHHHHHHhhhcccC-------------EEEEEecCCCcHHHHHHHHHHHh
Q 041079 138 NNQLVGVESRVVAIQSLLGAAP-------------LLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 138 ~~~~vGr~~~l~~l~~~L~~~~-------------~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+.++|.+...+.+...+.... .|.++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3568999987777765555432 68999999999999999998754
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.41 E-value=0.19 Score=56.14 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+|.|+|++|.||||+|+.++.+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998764
No 468
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.37 E-value=0.25 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKIS 183 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~ 183 (945)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998764
No 469
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.25 E-value=0.22 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|+.|.|||||.+.+..-+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6799999999999999999987643
No 470
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.21 E-value=2.3 Score=43.13 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHhhhcccCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 141 LVGVESRVVAIQSLLGAAPLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 141 ~vGr~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
+.=++...+.+..++.. +-+.|+|..|.|||.+|..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34456666666666654 348899999999999999888765
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.11 E-value=0.25 Score=48.70 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 472
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.09 E-value=0.22 Score=51.26 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+++|+|..|.|||||.+.++.-+... +.+++
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 6789999999999999999998766544 55555
No 473
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.97 E-value=0.96 Score=51.19 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=31.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQE 211 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ 211 (945)
.+.++|.|..|+|||+|+..+++.-. -+.++|+ .+.+.. .....+.++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~--~~~~V~~-~iGER~---~Ev~e~~~~ 274 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD--AQVVIYI-GCGERG---NEMTDVLEE 274 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS--CSEEEEE-ECCSSS---SHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC--CCEEEEE-EecccH---HHHHHHHHH
Confidence 78999999999999999999877532 2344444 444432 334444444
No 474
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.96 E-value=0.23 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|..|.|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999998643
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.93 E-value=0.28 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~ 180 (945)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999975
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.89 E-value=0.38 Score=47.50 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.6
Q ss_pred CEEEEE-ecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 159 PLLGIW-GIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 159 ~~v~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
++|+|+ +-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467787 67999999999999988766444455554
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.84 E-value=0.27 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
.+|+|.|+.|.||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998865
No 478
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.75 E-value=0.57 Score=50.72 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISS------DFEGSCFLE 193 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 193 (945)
..++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 679999999999999999999886432 123566765
No 479
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.71 E-value=0.28 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|..|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999999874
No 480
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.70 E-value=1.8 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|+.|+|||||.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 568999999999999999999764
No 481
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.61 E-value=4.5 Score=40.71 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHhhhcccCEEEEEecCCCcHHHHHHHHH
Q 041079 150 AIQSLLGAAPLLGIWGIGGIGKTIIARAIF 179 (945)
Q Consensus 150 ~l~~~L~~~~~v~I~G~gGiGKTtLA~~v~ 179 (945)
++...+...+.+.|.|..|.||||+...+.
T Consensus 68 ~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 68 EILEAISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 333334447889999999999998766554
No 482
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.59 E-value=0.3 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 041079 160 LLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 483
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.55 E-value=0.24 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.8
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|+.|.|||||++.++.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999999998753
No 484
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.52 E-value=0.31 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998863
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.49 E-value=0.25 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=22.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|+.|.|||||.+.++.-+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999998643
No 486
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.47 E-value=0.23 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|..|.|||||.+.++.-+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6789999999999999999998643
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.47 E-value=0.51 Score=53.65 Aligned_cols=43 Identities=5% Similarity=-0.038 Sum_probs=31.8
Q ss_pred cchHHHHHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHhhc
Q 041079 142 VGVESRVVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKISS 184 (945)
Q Consensus 142 vGr~~~l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~~~ 184 (945)
..|.+..+.+.+.... ..+|.+.|+.|.||||+|++++.++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3444445555555422 568999999999999999999998864
No 488
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.45 E-value=0.44 Score=54.12 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=25.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcccc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFE 187 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~ 187 (945)
..+|.++|++|.||||+|+.+++.....|-
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 457899999999999999999987765553
No 489
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.44 E-value=1.3 Score=50.33 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVRE 197 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 197 (945)
.+.++|.|..|+|||+|+..++++.. -+.++|+ .+.+
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~~--~~v~V~~-~iGE 268 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWSD--VDLVVYV-GCGE 268 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHSS--CSEEEEE-EEEE
T ss_pred CCEEeeecCCCccHHHHHHHHHhccC--CCEEEEE-Eecc
Confidence 78999999999999999999988633 2344554 3433
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.40 E-value=0.45 Score=50.20 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=27.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhccc--cceEEEE
Q 041079 159 PLLGIWGIGGIGKTIIARAIFDKISSDF--EGSCFLE 193 (945)
Q Consensus 159 ~~v~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 193 (945)
.++-|+|.+|+||||||.+++.....++ ..++|++
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3789999999999999999988765543 3466765
No 491
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.38 E-value=0.26 Score=51.26 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=26.5
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEE
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFL 192 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 192 (945)
..+++|+|..|.|||||++.++.-+.. ..+.+++
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~ 70 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHL 70 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEE
Confidence 679999999999999999999865432 2455555
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.36 E-value=0.26 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|..|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999999864
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.34 E-value=0.3 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=22.1
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHH
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDK 181 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~ 181 (945)
..+++|+|..|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999999874
No 494
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.33 E-value=0.5 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHHHhhhcc----cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 148 VVAIQSLLGA----APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 148 l~~l~~~L~~----~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..-+..++.. ...|.++|++|.|||.+|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445666665 3479999999999999999999853
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.30 E-value=0.27 Score=47.72 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 041079 160 LLGIWGIGGIGKTIIARAIFD 180 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~ 180 (945)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 496
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.29 E-value=0.27 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|..|.|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999998754
No 497
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.28 E-value=0.27 Score=51.06 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHh
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKI 182 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~ 182 (945)
..+++|+|+.|.|||||++.++.-+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 6799999999999999999998643
No 498
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.25 E-value=0.51 Score=47.45 Aligned_cols=107 Identities=12% Similarity=-0.045 Sum_probs=57.9
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhccccceEEEEechhhhhccCCHHHHHHHHHHHHhCCCC--ccCCHHHHHHHHcC
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLENVREESQRSGGLACLRQELLSKLLKHEN--VILDIDLNFRRLSR 235 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~ll~~l~~~~~--~~~~~~~l~~~L~~ 235 (945)
..++.|+|..|.||||+|..++.+...+-..+.++....+.... .++++.++.... .......+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~--------~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI--------RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGC--------SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHH--------HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 56889999999999999999998876654445544322110000 011111111111 11122333343332
Q ss_pred ----C-CcEEEEecCCC--hHHHHHHhcCCCCCCCCCeEEEEecCcc
Q 041079 236 ----M-KVLIVFDDVTC--FRQIKSLIRSPDWFMADSRIIITTRNKQ 275 (945)
Q Consensus 236 ----k-r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 275 (945)
. .-+||+|.+.. .++++.+....+ .|-.||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 3 45999999853 344444332111 2678999998654
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.16 E-value=0.54 Score=46.98 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCcHHHHHHHHHHHhhcc
Q 041079 158 APLLGIWGIGGIGKTIIARAIFDKISSD 185 (945)
Q Consensus 158 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 185 (945)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999988654
No 500
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.11 E-value=0.41 Score=48.95 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=26.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhccccceEEEE
Q 041079 160 LLGIWGIGGIGKTIIARAIFDKISSDFEGSCFLE 193 (945)
Q Consensus 160 ~v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 193 (945)
.|+|.|-||+||||+|..++..+...=..+..++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3667999999999999999998876544455554
Done!