BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041081
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED+ + ++++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
EE+ I + H LGNRW+ IA LPGRTDN +KN+WNS + RK
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED+ + K ++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
EE+ I + H LGNRW+ IA LPGRTDN IKN+WNS + RK
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED+ + K ++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
EE+ I + H LGNRW+ IA LPGRTDN IKN+WNS + RK
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED+ + K ++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
EE+ I + H LGNRW+ IA LPGRTDN IKN+WNS + RK
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNIT 71
L KG WT EED+ + + ++ G W + K+ R GK CR RW N+L ++K+ + T
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
EE+ I + H LGNRW+ IA LPGRTDN +KN+WNS + RK
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Query: 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKRGNIT 71
KG +T ED+++ +Y++ NG +W P+ L R K CR RW N+L + + T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 AEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRK 115
EE+ETI + + LG++WS+IA +PGRTDN IKN WNS +S++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITA 72
KK ++T EEDE+L + + +G W+ + R + CR RW NYL + TA
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 EEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYW 108
EE+ +V+ G +W++IA PGRTD IKN W
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 66 KRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFTG--PA 123
K+ T EE+E + + + G+ W +IAA P R + ++ W ++L+ + S T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA-PSISHTPWTAE 68
Query: 124 DDPLTSDDLSNNGIKLAGGCKRRKGRTSKVNSKKHKLALAS-IGMPKTKR 172
+D L + G + A K GRT ++ K + +++ +G+P+T++
Sbjct: 69 EDALLVQKIQEYGRQWAIIAKFFPGRTD-IHIKNRWVTISNKLGIPQTQQ 117
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 65 LKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
+K+ + T EE+ I + H LGNRW+ IA LPGRTDN IKN+WNS + RK
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 64 DLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116
++K+ + T EE+ + + H LGNRW+ IA LPGRTDN IKN+WNS + RK
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAE 73
K ++T EED L + + G W + + + R + CR RW NY+ L+ + E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYW 108
E+ + + ++ G +W+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64
L KG WT EED+ L K ++ G W + K+ R GK CR RW N+L +
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLS 113
L +G T EE++ ++KL G RWS+IA L GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64
L KG WT EED+ + K ++ G W + K+ R GK CR RW N+L +
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLS 113
L +G T EE++ ++KL G RWS+IA L GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64
L KG WT EED+ + + ++ G W + K+ R GK CR RW N+L +
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 65 LKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLS 113
L +G T EE++ +++L G RWS+IA L GR + + W++HL+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
K +WT EEDE L +R G+ W+ L + R + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 TAEEEETIVKLHSSLGNR-WSLIAAQLPGRTDNEIKNYWNSHLS 113
T EE+E + L G + W +A+ P RTD + + W LS
Sbjct: 12 THEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRW 57
L K RWT EEDE L K + NG W+ + N R C+ RW
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRW 45
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 71 TAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLS 113
T EE+E + KL G + W +IA LP RTD + ++ W L+
Sbjct: 7 TREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRW 57
L K RWT EEDE L K + NG W+ + N R C+ RW
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRW 45
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 71 TAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLS 113
T EE+E + KL G + W +IA LP RTD + ++ W L+
Sbjct: 7 TREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKN 43
KK +WT EE E + ++ GEG+W ++ KN
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKN 43
KK +WT EE E + ++ GEG+W ++ KN
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 43
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKN 43
KK +WT EE E + ++ GEG+W ++ KN
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKN 43
KK +WT EE E + ++ GEG+W ++ KN
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKN 43
KK +WT EE E + ++ GEG+W ++ KN
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 39
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 17 WTAEEDEILTKYIRANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKR 67
W EDEIL + G+ W + A LL + K C+ RW +L +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKK 61
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 186 DENKSSIGQVSCMASDEFFCGEASSDQASGLCLSKDIESEVLGPYEWLDSEIK 238
DE ++ + CM S+ +CG + QA+ +C + + ++G E ++ I+
Sbjct: 141 DEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIR 193
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 186 DENKSSIGQVSCMASDEFFCGEASSDQASGLCLSKDIESEVLGPYEWLDSEIK 238
DE ++ + CM S+ +CG + QA+ +C + + ++G E ++ I+
Sbjct: 163 DEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIR 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,910,485
Number of Sequences: 62578
Number of extensions: 456804
Number of successful extensions: 753
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 46
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)