Query 041081
Match_columns 337
No_of_seqs 288 out of 1727
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.6E-41 8.9E-46 295.6 4.2 153 12-165 4-158 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 7.4E-34 2.5E-38 241.3 11.5 130 13-146 1-130 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.3E-33 1.1E-37 228.3 10.0 105 11-116 1-105 (105)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.3E-32 4.5E-37 232.5 9.8 113 3-116 16-128 (128)
5 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.6E-32 5.4E-37 225.5 7.8 104 14-118 1-104 (107)
6 1h8a_C AMV V-MYB, MYB transfor 100.0 7.3E-33 2.5E-37 234.1 4.3 125 40-165 1-127 (128)
7 3osg_A MYB21; transcription-DN 100.0 9.6E-32 3.3E-36 227.0 8.8 106 8-115 5-110 (126)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 3E-30 1E-34 225.4 8.8 109 7-116 51-159 (159)
9 3osg_A MYB21; transcription-DN 99.9 6.2E-26 2.1E-30 191.4 4.2 114 62-175 6-120 (126)
10 1gv2_A C-MYB, MYB proto-oncoge 99.9 2.8E-25 9.6E-30 181.2 3.7 101 65-165 2-104 (105)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 9.5E-25 3.3E-29 179.1 1.7 99 67-165 1-101 (107)
12 3zqc_A MYB3; transcription-DNA 99.9 4.4E-24 1.5E-28 181.1 3.8 102 67-168 2-105 (131)
13 2dim_A Cell division cycle 5-l 99.8 1.9E-21 6.4E-26 148.1 1.9 67 8-75 3-69 (70)
14 2dim_A Cell division cycle 5-l 99.8 2.9E-18 1E-22 130.3 9.1 64 62-125 4-69 (70)
15 1ign_A Protein (RAP1); RAP1,ye 99.7 7.9E-18 2.7E-22 154.9 6.7 106 9-115 3-200 (246)
16 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-17 7.6E-22 121.8 7.8 56 62-117 3-59 (60)
17 2llk_A Cyclin-D-binding MYB-li 99.7 2.1E-17 7.3E-22 127.1 6.9 56 55-111 11-66 (73)
18 2din_A Cell division cycle 5-l 99.7 1.2E-17 4.1E-22 125.6 5.4 61 60-121 2-62 (66)
19 2cu7_A KIAA1915 protein; nucle 99.7 7.8E-17 2.7E-21 123.2 7.3 65 61-125 3-67 (72)
20 1guu_A C-MYB, MYB proto-oncoge 99.7 8.4E-17 2.9E-21 115.3 6.8 51 65-115 1-52 (52)
21 1gvd_A MYB proto-oncogene prot 99.7 9.1E-17 3.1E-21 115.2 7.0 51 65-115 1-52 (52)
22 1ity_A TRF1; helix-turn-helix, 99.7 2.5E-16 8.7E-21 119.4 8.4 60 61-120 4-66 (69)
23 2d9a_A B-MYB, MYB-related prot 99.6 4.7E-17 1.6E-21 120.0 3.4 57 9-66 3-59 (60)
24 1gvd_A MYB proto-oncogene prot 99.6 7.1E-17 2.4E-21 115.7 3.1 52 12-64 1-52 (52)
25 2juh_A Telomere binding protei 99.6 7.3E-17 2.5E-21 135.2 2.9 82 9-91 12-103 (121)
26 1guu_A C-MYB, MYB proto-oncoge 99.6 1E-16 3.6E-21 114.8 2.2 52 12-64 1-52 (52)
27 1x41_A Transcriptional adaptor 99.6 8.8E-16 3E-20 113.4 6.9 54 62-115 3-57 (60)
28 1ity_A TRF1; helix-turn-helix, 99.6 2.2E-16 7.6E-21 119.7 3.1 62 9-71 5-68 (69)
29 2roh_A RTBP1, telomere binding 99.6 3.6E-16 1.2E-20 131.2 4.3 78 9-87 26-113 (122)
30 3sjm_A Telomeric repeat-bindin 99.6 1.3E-15 4.3E-20 114.3 6.9 53 65-117 9-64 (64)
31 1w0t_A Telomeric repeat bindin 99.6 1.7E-15 6E-20 109.0 6.9 49 66-114 1-52 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.6 3E-15 1E-19 115.0 5.7 58 62-119 3-66 (75)
33 3sjm_A Telomeric repeat-bindin 99.6 6.9E-16 2.4E-20 115.7 2.0 55 11-66 8-64 (64)
34 1x41_A Transcriptional adaptor 99.5 1.2E-15 4E-20 112.8 2.6 55 9-64 3-57 (60)
35 2elk_A SPCC24B10.08C protein; 99.5 8.8E-15 3E-19 107.4 6.9 50 63-112 5-56 (58)
36 1ign_A Protein (RAP1); RAP1,ye 99.5 4.7E-15 1.6E-19 136.6 5.5 89 63-159 4-98 (246)
37 2din_A Cell division cycle 5-l 99.5 1.1E-15 3.8E-20 114.8 -0.3 59 7-68 2-60 (66)
38 1w0t_A Telomeric repeat bindin 99.5 3.5E-15 1.2E-19 107.4 1.9 49 13-62 1-51 (53)
39 2juh_A Telomere binding protei 99.5 5.1E-15 1.7E-19 124.0 2.4 81 61-141 11-103 (121)
40 2yum_A ZZZ3 protein, zinc fing 99.5 4.1E-15 1.4E-19 114.3 1.1 60 9-69 3-67 (75)
41 2elk_A SPCC24B10.08C protein; 99.5 7.4E-15 2.5E-19 107.8 2.1 52 10-61 5-56 (58)
42 2ltp_A Nuclear receptor corepr 99.2 6.6E-15 2.2E-19 117.2 0.0 56 60-115 9-64 (89)
43 2cu7_A KIAA1915 protein; nucle 99.4 1.5E-14 5.2E-19 110.4 1.4 59 7-67 2-60 (72)
44 2roh_A RTBP1, telomere binding 99.4 1.4E-13 4.9E-18 115.4 5.3 79 62-140 26-116 (122)
45 2llk_A Cyclin-D-binding MYB-li 99.4 1.1E-13 3.8E-18 106.3 2.5 61 3-67 12-72 (73)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5.3E-13 1.8E-17 102.6 5.7 51 63-113 14-68 (73)
47 2yus_A SWI/SNF-related matrix- 99.4 6.9E-13 2.4E-17 103.3 6.1 48 64-111 15-62 (79)
48 2ckx_A NGTRF1, telomere bindin 99.3 5E-13 1.7E-17 105.1 4.5 69 15-84 1-79 (83)
49 2aje_A Telomere repeat-binding 99.3 6.8E-13 2.3E-17 108.6 4.1 78 8-86 7-94 (105)
50 2aje_A Telomere repeat-binding 99.3 2.7E-12 9.1E-17 105.1 5.4 58 63-120 9-76 (105)
51 2yus_A SWI/SNF-related matrix- 99.3 1.5E-12 5.3E-17 101.4 2.6 52 7-60 11-62 (79)
52 2ckx_A NGTRF1, telomere bindin 99.2 7.4E-12 2.5E-16 98.4 6.2 46 68-113 1-51 (83)
53 2ltp_A Nuclear receptor corepr 98.9 1.1E-12 3.7E-17 104.3 0.0 55 7-63 9-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.3E-12 8E-17 98.9 1.1 54 8-62 12-68 (73)
55 1x58_A Hypothetical protein 49 99.2 4.8E-11 1.6E-15 88.5 6.2 50 66-115 7-59 (62)
56 2cjj_A Radialis; plant develop 99.1 5.7E-11 1.9E-15 95.3 5.6 49 66-114 7-59 (93)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 2E-09 6.9E-14 79.5 7.5 48 66-113 11-58 (61)
58 2cjj_A Radialis; plant develop 98.8 5.7E-10 2E-14 89.4 0.8 48 13-61 7-57 (93)
59 3hm5_A DNA methyltransferase 1 98.8 5E-09 1.7E-13 83.8 4.8 65 49-117 16-85 (93)
60 1x58_A Hypothetical protein 49 98.7 3.5E-09 1.2E-13 78.5 2.2 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.8E-08 6.2E-13 77.0 5.5 50 64-114 5-58 (72)
62 2iw5_B Protein corest, REST co 98.6 4E-08 1.4E-12 89.9 7.1 49 66-114 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.9E-08 6.6E-13 74.2 2.4 52 8-61 6-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.4 4.3E-07 1.5E-11 69.5 6.9 48 67-114 8-59 (73)
65 2xag_B REST corepressor 1; ami 98.4 2.1E-07 7E-12 93.8 6.1 46 68-113 381-426 (482)
66 1fex_A TRF2-interacting telome 98.4 3E-07 1E-11 67.5 5.3 47 67-113 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.3 8.8E-08 3E-12 73.2 0.9 51 10-62 4-57 (72)
68 1fex_A TRF2-interacting telome 98.3 1.1E-07 3.6E-12 70.0 1.1 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 4E-07 1.4E-11 69.7 1.2 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.0 1.6E-06 5.3E-11 79.4 2.4 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.4E-05 4.9E-10 59.1 6.9 50 62-111 4-54 (63)
72 1ug2_A 2610100B20RIK gene prod 98.0 8.8E-06 3E-10 64.3 5.2 45 69-113 35-82 (95)
73 2lr8_A CAsp8-associated protei 97.0 2.5E-06 8.4E-11 64.1 0.0 44 69-113 16-62 (70)
74 4eef_G F-HB80.4, designed hema 97.7 5E-06 1.7E-10 63.4 0.4 43 67-109 20-66 (74)
75 1ofc_X ISWI protein; nuclear p 97.7 5.4E-05 1.8E-09 72.3 6.7 98 15-113 111-274 (304)
76 4eef_G F-HB80.4, designed hema 97.6 9.6E-06 3.3E-10 61.9 0.7 44 14-58 20-66 (74)
77 2yqk_A Arginine-glutamic acid 97.5 4.5E-05 1.5E-09 56.4 2.5 50 8-59 3-53 (63)
78 2crg_A Metastasis associated p 97.5 0.00021 7E-09 54.0 6.2 45 67-111 8-53 (70)
79 4a69_C Nuclear receptor corepr 97.5 0.00021 7.3E-09 56.9 6.3 45 67-111 43-87 (94)
80 4iej_A DNA methyltransferase 1 97.4 0.00015 5.3E-09 57.7 4.8 58 55-116 22-84 (93)
81 3hm5_A DNA methyltransferase 1 97.4 1.9E-05 6.4E-10 63.1 -0.8 50 12-62 28-81 (93)
82 2xag_B REST corepressor 1; ami 97.0 0.00021 7.1E-09 72.1 2.3 47 12-60 378-424 (482)
83 2ebi_A DNA binding protein GT- 96.9 0.00058 2E-08 53.0 3.8 48 67-114 4-65 (86)
84 4a69_C Nuclear receptor corepr 96.6 0.00067 2.3E-08 54.0 1.7 44 14-59 43-86 (94)
85 2crg_A Metastasis associated p 96.6 0.00078 2.7E-08 50.8 1.8 44 14-59 8-52 (70)
86 2lr8_A CAsp8-associated protei 95.3 0.00068 2.3E-08 50.9 0.0 46 15-62 15-62 (70)
87 4b4c_A Chromodomain-helicase-D 96.2 0.003 1E-07 56.3 3.8 31 13-43 6-38 (211)
88 2ebi_A DNA binding protein GT- 96.1 0.00036 1.2E-08 54.2 -2.6 50 13-62 3-64 (86)
89 2y9y_A Imitation switch protei 95.9 0.015 5.1E-07 56.9 7.3 99 15-114 124-291 (374)
90 1ug2_A 2610100B20RIK gene prod 95.7 0.0034 1.2E-07 49.6 1.6 46 15-61 34-81 (95)
91 4b4c_A Chromodomain-helicase-D 94.3 0.032 1.1E-06 49.6 4.0 40 5-44 125-164 (211)
92 1irz_A ARR10-B; helix-turn-hel 94.1 0.15 5E-06 37.8 6.6 47 65-111 5-56 (64)
93 4iej_A DNA methyltransferase 1 94.1 0.017 5.9E-07 45.9 1.6 49 12-61 28-80 (93)
94 2xb0_X Chromo domain-containin 87.5 0.41 1.4E-05 44.8 3.9 28 15-42 169-196 (270)
95 1ofc_X ISWI protein; nuclear p 86.6 0.74 2.5E-05 43.8 5.2 45 68-112 111-156 (304)
96 2xb0_X Chromo domain-containin 78.9 1.4 4.7E-05 41.2 3.7 26 69-94 170-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 71.4 1.9 6.3E-05 31.8 1.9 45 11-56 4-52 (64)
98 2li6_A SWI/SNF chromatin-remod 57.5 7.8 0.00027 31.2 3.4 38 77-114 53-98 (116)
99 2jrz_A Histone demethylase jar 55.7 14 0.00047 29.8 4.6 38 77-114 44-93 (117)
100 2lm1_A Lysine-specific demethy 52.8 16 0.00056 28.6 4.5 38 77-114 48-97 (107)
101 1u78_A TC3 transposase, transp 50.4 86 0.0029 24.3 8.7 88 15-107 5-99 (141)
102 2cxy_A BAF250B subunit, HBAF25 48.7 19 0.00067 29.2 4.5 39 77-115 55-105 (125)
103 2eqy_A RBP2 like, jumonji, at 48.5 20 0.00068 29.1 4.4 38 77-114 46-95 (122)
104 2kk0_A AT-rich interactive dom 47.6 24 0.00081 29.5 4.9 39 77-115 68-119 (145)
105 2rq5_A Protein jumonji; develo 46.8 21 0.00072 29.1 4.3 76 13-114 6-96 (121)
106 1c20_A DEAD ringer protein; DN 45.6 24 0.00081 28.7 4.5 38 77-114 56-106 (128)
107 1kkx_A Transcription regulator 44.9 11 0.00039 30.7 2.4 38 78-115 53-98 (123)
108 2jxj_A Histone demethylase jar 43.2 14 0.00049 28.3 2.7 37 78-114 41-89 (96)
109 2rq5_A Protein jumonji; develo 43.1 7.3 0.00025 31.9 1.0 57 24-83 46-113 (121)
110 2y9y_A Imitation switch protei 41.2 36 0.0012 33.1 5.6 47 68-115 124-172 (374)
111 2o8x_A Probable RNA polymerase 35.6 44 0.0015 22.9 4.1 39 73-112 18-56 (70)
112 1ig6_A MRF-2, modulator recogn 35.2 23 0.00078 27.8 2.7 39 77-115 37-88 (107)
113 3i4p_A Transcriptional regulat 35.0 41 0.0014 27.8 4.5 45 73-118 3-48 (162)
114 2k27_A Paired box protein PAX- 34.8 1.7E+02 0.0059 23.5 8.3 95 15-114 24-138 (159)
115 3cz6_A DNA-binding protein RAP 33.5 26 0.00088 30.3 2.9 25 10-34 110-142 (168)
116 2li6_A SWI/SNF chromatin-remod 33.2 9.6 0.00033 30.7 0.2 39 24-63 53-98 (116)
117 1ku3_A Sigma factor SIGA; heli 33.1 45 0.0015 23.5 3.9 39 73-112 13-55 (73)
118 3cz6_A DNA-binding protein RAP 32.6 33 0.0011 29.6 3.5 24 63-86 110-141 (168)
119 2p7v_B Sigma-70, RNA polymeras 29.1 51 0.0017 22.9 3.5 39 74-113 9-51 (68)
120 1k78_A Paired box protein PAX5 28.8 2E+02 0.0067 22.7 7.6 79 14-96 30-118 (149)
121 2e1c_A Putative HTH-type trans 23.4 1.7E+02 0.0057 24.4 6.3 46 72-118 26-72 (171)
122 3hug_A RNA polymerase sigma fa 22.8 81 0.0028 23.2 3.8 38 74-112 41-78 (92)
123 2dbb_A Putative HTH-type trans 21.7 1.4E+02 0.0046 23.9 5.3 43 73-116 9-52 (151)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.6e-41 Score=295.57 Aligned_cols=153 Identities=29% Similarity=0.517 Sum_probs=109.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCC-CHH
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGN-RWS 90 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~-~W~ 90 (337)
+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|..||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 68999999999999999999998899999999998 9999999999999999999999999999999999999995 799
Q ss_pred HHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCCCcChHHHhhcCccccCCCCCCCCCCccccccccchhhhcc
Q 041081 91 LIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADDPLTSDDLSNNGIKLAGGCKRRKGRTSKVNSKKHKLALASI 165 (337)
Q Consensus 91 ~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed~l~~~~~~~~G~kw~~iak~~~GRt~~~iknr~~~~~~~~ 165 (337)
.||++|||||++||++||+++|+|.+++.+ +++||.+++..+..+|++|+.||+.+||||++.+++||+.++++.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988 999999999999999999999999999999999999999987653
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=7.4e-34 Score=241.33 Aligned_cols=130 Identities=35% Similarity=0.579 Sum_probs=107.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 041081 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWSLI 92 (337)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~I 92 (337)
.||+||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999998899999999998 999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhcccccCCCCCCCCCCcChHHHhhcCccccCCCCCC
Q 041081 93 AAQLPGRTDNEIKNYWNSHLSRKTFSFTGPADDPLTSDDLSNNGIKLAGGCKRR 146 (337)
Q Consensus 93 A~~lpgRt~~qcr~Rw~~~L~~~i~~~~~~~ed~l~~~~~~~~G~kw~~iak~~ 146 (337)
|++|||||++||++||+++|++.+.......+..+. ......+|+.|++.+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p---~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP---DRSKKRKAADVPKKL 130 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC---CCC------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc---hhhhhhhhhhcchhc
Confidence 999999999999999999999998776533333221 233466788888765
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.3e-33 Score=228.30 Aligned_cols=105 Identities=47% Similarity=0.800 Sum_probs=99.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHH
Q 041081 11 GLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWS 90 (337)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~ 90 (337)
.|++|+||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHhccccc
Q 041081 91 LIAAQLPGRTDNEIKNYWNSHLSRKT 116 (337)
Q Consensus 91 ~IA~~lpgRt~~qcr~Rw~~~L~~~i 116 (337)
.||++|||||++||++||+.+|++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1.3e-32 Score=232.46 Aligned_cols=113 Identities=42% Similarity=0.722 Sum_probs=103.3
Q ss_pred CCcccccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHH
Q 041081 3 RAPCCEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLH 82 (337)
Q Consensus 3 r~~~~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv 82 (337)
|+.-..+|.+++|+||+|||++|+++|++||.++|..||..|++ |++.||++||.++|+|.+++++||+|||.+|+++|
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 44445689999999999999999999999998899999999998 99999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHhccccc
Q 041081 83 SSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116 (337)
Q Consensus 83 ~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i 116 (337)
.+||++|..||++|||||++||++||+.+|++++
T Consensus 95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999998764
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=1.6e-32 Score=225.53 Aligned_cols=104 Identities=27% Similarity=0.487 Sum_probs=99.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 041081 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWSLIA 93 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA 93 (337)
||+||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhcccccCC
Q 041081 94 AQLPGRTDNEIKNYWNSHLSRKTFS 118 (337)
Q Consensus 94 ~~lpgRt~~qcr~Rw~~~L~~~i~~ 118 (337)
++|||||++||++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999876543
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=7.3e-33 Score=234.07 Aligned_cols=125 Identities=23% Similarity=0.396 Sum_probs=99.8
Q ss_pred cccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhcccccCC
Q 041081 40 LPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGN-RWSLIAAQLPGRTDNEIKNYWNSHLSRKTFS 118 (337)
Q Consensus 40 IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~ 118 (337)
||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||++||++||+++|+|.+++
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7889998 9999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CC-CCCCCCcChHHHhhcCccccCCCCCCCCCCccccccccchhhhcc
Q 041081 119 FT-GPADDPLTSDDLSNNGIKLAGGCKRRKGRTSKVNSKKHKLALASI 165 (337)
Q Consensus 119 ~~-~~~ed~l~~~~~~~~G~kw~~iak~~~GRt~~~iknr~~~~~~~~ 165 (337)
.+ +++||.+++.++..+|++|+.||+.+||||++.+++||+.++++.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99 999999999999999999999999999999999999999987653
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=9.6e-32 Score=227.02 Aligned_cols=106 Identities=34% Similarity=0.627 Sum_probs=101.4
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGN 87 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~ 87 (337)
.++.+++|+||+|||++|+++|.+||. +|..||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999998 99999999998 9999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 88 RWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 88 ~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
+|..||++|||||+.||++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988653
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=3e-30 Score=225.44 Aligned_cols=109 Identities=45% Similarity=0.757 Sum_probs=104.0
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcC
Q 041081 7 CEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLG 86 (337)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G 86 (337)
..+|.+++++||+|||++|+++|++||..+|..||..|++ |++.||+.||.++|+|.+++++||++||.+|+++|.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 3589999999999999999999999998789999999998 999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHhccccc
Q 041081 87 NRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116 (337)
Q Consensus 87 ~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i 116 (337)
++|..||++|||||++||++||+.+|++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998764
No 9
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.92 E-value=6.2e-26 Score=191.42 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=102.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCCCcChHHHhhcCcccc
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADDPLTSDDLSNNGIKLA 140 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed~l~~~~~~~~G~kw~ 140 (337)
.+..++++||+|||++|+++|.+||.+|..||..||+|+++||+.||+++|.|.+++.+ +++||.+++.++..+|++|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCccccccccchhhhccCCCCCCCCCc
Q 041081 141 GGCKRRKGRTSKVNSKKHKLALASIGMPKTKRGTI 175 (337)
Q Consensus 141 ~iak~~~GRt~~~iknr~~~~~~~~~~~~~~~~~~ 175 (337)
.||+.+||||++.+++||+.++++..+|.+..+++
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~~~~~~~ 120 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLE 120 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCCCCCCCcC
Confidence 99999999999999999999999988887665543
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.90 E-value=2.8e-25 Score=181.20 Aligned_cols=101 Identities=26% Similarity=0.416 Sum_probs=95.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCCCcChHHHhhcCccccCC
Q 041081 65 LKRGNITAEEEETIVKLHSSLGN-RWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADDPLTSDDLSNNGIKLAGG 142 (337)
Q Consensus 65 ~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed~l~~~~~~~~G~kw~~i 142 (337)
+++++||+|||++|+++|.+||. +|..||.+||+||++||++||.++|+|.+++.+ +++||.+++.++..+|++|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 67999999999999999999995 899999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCccccccccchhhhcc
Q 041081 143 CKRRKGRTSKVNSKKHKLALASI 165 (337)
Q Consensus 143 ak~~~GRt~~~iknr~~~~~~~~ 165 (337)
|+.+||||++.+++||+.+++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.89 E-value=9.5e-25 Score=179.11 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCCCcChHHHhhcCccccCCCC
Q 041081 67 RGNITAEEEETIVKLHSSLGN-RWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADDPLTSDDLSNNGIKLAGGCK 144 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed~l~~~~~~~~G~kw~~iak 144 (337)
|++||+|||++|+++|..||. +|..||..||+||++||+.||.++|+|.+++.+ +++||.+++.++..+|++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCCccccccccchhhhcc
Q 041081 145 RRKGRTSKVNSKKHKLALASI 165 (337)
Q Consensus 145 ~~~GRt~~~iknr~~~~~~~~ 165 (337)
.+||||++.+++||+.++++.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHhhH
Confidence 999999999999999887653
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.88 E-value=4.4e-24 Score=181.08 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCCCcChHHHhhcCccccCCCC
Q 041081 67 RGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADDPLTSDDLSNNGIKLAGGCK 144 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed~l~~~~~~~~G~kw~~iak 144 (337)
+|+||+|||++|+++|..|| .+|..||.+|||||+.||+.||.++|.|.+.+.+ +++||.+++.++..+|++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999 6899999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCCccccccccchhhhccCCC
Q 041081 145 RRKGRTSKVNSKKHKLALASIGMP 168 (337)
Q Consensus 145 ~~~GRt~~~iknr~~~~~~~~~~~ 168 (337)
.+||||++.+++||+.++.+....
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998776443
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-21 Score=148.07 Aligned_cols=67 Identities=24% Similarity=0.519 Sum_probs=64.5
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHH
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEE 75 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED 75 (337)
-.|.+++++||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 468899999999999999999999998899999999998 9999999999999999999999999997
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=130.34 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=60.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccccCCCC-CCCCC
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFT-GPADD 125 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~-~~~ed 125 (337)
.|.+++++||+|||++|+++|.+|| .+|..||.+|++||++|||+||+++|+|.|++.+ +++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999 66665
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.71 E-value=7.9e-18 Score=154.91 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=92.3
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCC-----CcccccccCccccccccchhhhhcccCCCC-----------------
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGS-----WRSLPKNAGLLRCGKSCRLRWINYLRADLK----------------- 66 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~-----W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~k----------------- 66 (337)
.+.+++++||+|||++|+++|.+||..+ |..||+.|++ |++.|||.||+.+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998743 9999999998 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-c------------------------------------------------
Q 041081 67 ------------RGNITAEEEETIVKLHSS-L------------------------------------------------ 85 (337)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (337)
+.+||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999998876 2
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 86 -----GN----RWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 86 -----G~----~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
|. .|.+||+.+|+||..++|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999888654
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.2e-17 Score=121.77 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=53.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccccC
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTF 117 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~ 117 (337)
+|.+++++||+|||++|+++|.+|| ++|..||++|++||++|||+||+++|+|.|+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4778999999999999999999999 6999999999999999999999999999875
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=127.09 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=46.7
Q ss_pred hhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 041081 55 LRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSH 111 (337)
Q Consensus 55 ~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~ 111 (337)
-||.++|+|.+++++||+|||++|+++|++||++|+.||+.| |||++|||+||+.+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999 99999999999854
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=125.55 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=58.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcccccCCCCC
Q 041081 60 YLRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFTG 121 (337)
Q Consensus 60 ~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~~ 121 (337)
+|+|.+++++||+|||++|+++|+.||.+|..||+ |+|||++|||+||+++|+|.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999887653
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=7.8e-17 Score=123.24 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=59.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcccccCCCCCCCCC
Q 041081 61 LRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFTGPADD 125 (337)
Q Consensus 61 L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~~~~ed 125 (337)
++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+++|++.++....+.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 57889999999999999999999999999999999999999999999999999998774444443
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=8.4e-17 Score=115.29 Aligned_cols=51 Identities=35% Similarity=0.595 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 65 LKRGNITAEEEETIVKLHSSLGN-RWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 65 ~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
+++++||+|||++|+++|.+||. +|..||++|||||++||++||+++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 46899999999999999999997 9999999999999999999999999984
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.67 E-value=9.1e-17 Score=115.18 Aligned_cols=51 Identities=37% Similarity=0.746 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 65 LKRGNITAEEEETIVKLHSSLGN-RWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 65 ~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
+++++||+|||++|+++|.+||. +|..||+.|+|||++|||+||+++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999996 7999999999999999999999999984
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=2.5e-16 Score=119.35 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=56.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhcccccCCCC
Q 041081 61 LRADLKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLP--GRTDNEIKNYWNSHLSRKTFSFT 120 (337)
Q Consensus 61 L~p~~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~Rw~~~L~~~i~~~~ 120 (337)
..+..++++||+|||++|+++|.+|| ++|..||++|+ +||+.|||+||+++|+|.|.+..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 45677899999999999999999999 69999999999 99999999999999999998765
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4.7e-17 Score=120.02 Aligned_cols=57 Identities=30% Similarity=0.556 Sum_probs=54.4
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCC
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLK 66 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~k 66 (337)
.|.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999997799999999998 9999999999999999875
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=7.1e-17 Score=115.75 Aligned_cols=52 Identities=42% Similarity=0.762 Sum_probs=49.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCC
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (337)
|++++||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999998889999999998 99999999999999984
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.63 E-value=7.3e-17 Score=135.22 Aligned_cols=82 Identities=16% Similarity=0.300 Sum_probs=76.6
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccc----Cccccccccchhhhhccc-----CCCCCC-CCCHHHHHHH
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNA----GLLRCGKSCRLRWINYLR-----ADLKRG-NITAEEEETI 78 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L~-----p~~kkg-~WT~EED~~L 78 (337)
++..++++||+|||+.|+++|++||.++|..|+..+ ++ |+..||++||+++++ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 567889999999999999999999999999999985 55 999999999999998 999999 9999999999
Q ss_pred HHHHHHcCCCHHH
Q 041081 79 VKLHSSLGNRWSL 91 (337)
Q Consensus 79 l~lv~~~G~~W~~ 91 (337)
++++..+|++|..
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999988865
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=1e-16 Score=114.80 Aligned_cols=52 Identities=37% Similarity=0.713 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCC
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (337)
|++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998899999999998 99999999999999984
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=8.8e-16 Score=113.45 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=50.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
.+.+.+++||+|||++|+++|++|| .+|..||++||+||++|||+||+++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3568899999999999999999999 79999999999999999999999999865
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=2.2e-16 Score=119.68 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=57.9
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccC--ccccccccchhhhhcccCCCCCCCCC
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLRADLKRGNIT 71 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~~Rt~~qCr~Rw~~~L~p~~kkg~WT 71 (337)
++..++++||+|||++|+++|++||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5778899999999999999999999889999999999 7 999999999999999999987653
No 29
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.60 E-value=3.6e-16 Score=131.21 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=71.7
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccc----Cccccccccchhhhhcc-----cCCCCCCCCCHHH-HHHH
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNA----GLLRCGKSCRLRWINYL-----RADLKRGNITAEE-EETI 78 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L-----~p~~kkg~WT~EE-D~~L 78 (337)
+...++++||+|||+.|+++|++||.++|..|+..+ ++ |+..||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 455678999999999999999999999999999864 55 99999999999999 7999999999999 8999
Q ss_pred HHHHHHcCC
Q 041081 79 VKLHSSLGN 87 (337)
Q Consensus 79 l~lv~~~G~ 87 (337)
++++..||+
T Consensus 105 ~~~h~~~g~ 113 (122)
T 2roh_A 105 LAAQAYWSV 113 (122)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 999999995
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.3e-15 Score=114.30 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhcccccC
Q 041081 65 LKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLP--GRTDNEIKNYWNSHLSRKTF 117 (337)
Q Consensus 65 ~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~Rw~~~L~~~i~ 117 (337)
.++++||+|||++|+++|.+|| .+|..||+.++ +||+.|||+||.+++++.|+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4788999999999999999999 59999999976 99999999999999999874
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.7e-15 Score=109.01 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhccc
Q 041081 66 KRGNITAEEEETIVKLHSSLG-NRWSLIAAQLP--GRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~Rw~~~L~~ 114 (337)
++++||+|||++|+++|.+|| ++|..||..|+ +||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=115.04 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=53.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcC------CCHHHHHhhCCCCCHHHHHHHHHHhcccccCCC
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLG------NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFSF 119 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G------~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~ 119 (337)
+|.+++++||+|||++|+++|.+|| .+|..||++|++||++|||+||++||++.++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4778899999999999999999999 689999999999999999999999999877553
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=6.9e-16 Score=115.74 Aligned_cols=55 Identities=31% Similarity=0.521 Sum_probs=49.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCcccccccC--ccccccccchhhhhcccCCCC
Q 041081 11 GLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLRADLK 66 (337)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~~Rt~~qCr~Rw~~~L~p~~k 66 (337)
..+|++||+|||++|+++|++||.++|..||+.++ + |++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999876 5 9999999999999998764
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=112.79 Aligned_cols=55 Identities=18% Similarity=0.441 Sum_probs=51.8
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCC
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD 64 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (337)
.+.+++++||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 36899999999999999999999998799999999998 99999999999999765
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=8.8e-15 Score=107.43 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHhc
Q 041081 63 ADLKRGNITAEEEETIVKLHSSLG-NRWSLIAAQLP-GRTDNEIKNYWNSHL 112 (337)
Q Consensus 63 p~~kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRt~~qcr~Rw~~~L 112 (337)
..+.+++||++||++|+++|++|| .+|..||++|+ +||++|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356688999999999999999999 89999999999 999999999999875
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.53 E-value=4.7e-15 Score=136.56 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHhcccccCCCCCCCCCCcChHHHhhcC
Q 041081 63 ADLKRGNITAEEEETIVKLHSSLGNR------WSLIAAQLPGRTDNEIKNYWNSHLSRKTFSFTGPADDPLTSDDLSNNG 136 (337)
Q Consensus 63 p~~kkg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~~~~~~ed~l~~~~~~~~G 136 (337)
+.+++++||+|||++|+++|++||++ |..||++|||||++|||+||+.+|++++...-..+++..++.+.. |
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~--G 81 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD--G 81 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT--S
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccC--C
Confidence 35678999999999999999999964 999999999999999999999999999885556666776666665 8
Q ss_pred ccccCCCCCCCCCCccccccccc
Q 041081 137 IKLAGGCKRRKGRTSKVNSKKHK 159 (337)
Q Consensus 137 ~kw~~iak~~~GRt~~~iknr~~ 159 (337)
+ |..|+ .+|+ .+|+++.
T Consensus 82 n-~ikis-~lp~----siK~rft 98 (246)
T 1ign_A 82 N-LIKTK-VLPP----SIKRKFS 98 (246)
T ss_dssp C-BCEES-SCCC----CSCCCCC
T ss_pred C-ceeee-ccCc----cccCccc
Confidence 7 99999 7777 6777776
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-15 Score=114.79 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=54.7
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCC
Q 041081 7 CEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRG 68 (337)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg 68 (337)
+.+|.+++++||+|||++|+++|+.||. +|..||+ +++ |++.||+.||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 3689999999999999999999999997 9999999 777 999999999999999877664
No 38
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=3.5e-15 Score=107.43 Aligned_cols=49 Identities=29% Similarity=0.484 Sum_probs=46.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccccccC--ccccccccchhhhhccc
Q 041081 13 KKGRWTAEEDEILTKYIRANGEGSWRSLPKNAG--LLRCGKSCRLRWINYLR 62 (337)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~~Rt~~qCr~Rw~~~L~ 62 (337)
++++||+|||++|+++|++||.++|..||..|+ + |++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 7 999999999999875
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.49 E-value=5.1e-15 Score=124.02 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=71.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHhcc-----cccCCC-CCCCC-CCcC
Q 041081 61 LRADLKRGNITAEEEETIVKLHSSLGN-RWSLIAAQL----PGRTDNEIKNYWNSHLS-----RKTFSF-TGPAD-DPLT 128 (337)
Q Consensus 61 L~p~~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRt~~qcr~Rw~~~L~-----~~i~~~-~~~~e-d~l~ 128 (337)
+.+..++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++|+ |.+++. +.+++ +..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 556778999999999999999999996 999999984 99999999999999999 998886 33333 3568
Q ss_pred hHHHhhcCccccC
Q 041081 129 SDDLSNNGIKLAG 141 (337)
Q Consensus 129 ~~~~~~~G~kw~~ 141 (337)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 8999999999997
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-15 Score=114.30 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=56.1
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCC-----CCCcccccccCccccccccchhhhhcccCCCCCCC
Q 041081 9 KIGLKKGRWTAEEDEILTKYIRANGE-----GSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGN 69 (337)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~-----~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~ 69 (337)
+|.+++++||+|||++|+++|.+||. .+|..||+.|++ |++.||+.||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999995 689999999998 9999999999999998887764
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=7.4e-15 Score=107.85 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=47.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcc
Q 041081 10 IGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (337)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (337)
..+.+++||++||++|+++|++||.++|..||+.|+++|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 5677999999999999999999998899999999993399999999999875
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=6.6e-15 Score=117.16 Aligned_cols=56 Identities=29% Similarity=0.267 Sum_probs=53.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 60 YLRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 60 ~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
.+.|.+++++||+|||.+|+++|..||.+|..||++|||||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999999764
No 43
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=1.5e-14 Score=110.45 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=55.0
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCC
Q 041081 7 CEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKR 67 (337)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kk 67 (337)
+..|.+++++||+|||++|+++|.+||. +|..||..|++ |+..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999997 99999999998 99999999999999877665
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.41 E-value=1.4e-13 Score=115.39 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=67.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHhc-----ccccCCCC-CCCC-CCcCh
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLGN-RWSLIAAQL----PGRTDNEIKNYWNSHL-----SRKTFSFT-GPAD-DPLTS 129 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRt~~qcr~Rw~~~L-----~~~i~~~~-~~~e-d~l~~ 129 (337)
....++++||.|||+.|+++|++||. +|..|++.+ ++||+.|||+||.+++ .|.+++.. .++| +..++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 33457889999999999999999995 999999974 8999999999999999 78988866 4444 36788
Q ss_pred HHHhhcCcccc
Q 041081 130 DDLSNNGIKLA 140 (337)
Q Consensus 130 ~~~~~~G~kw~ 140 (337)
.++..+|++-+
T Consensus 106 ~~h~~~g~~~~ 116 (122)
T 2roh_A 106 AAQAYWSVDSS 116 (122)
T ss_dssp HHHHHHHSSCS
T ss_pred HHHHHHhhHHh
Confidence 99999987643
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=106.33 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCcccccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCC
Q 041081 3 RAPCCEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKR 67 (337)
Q Consensus 3 r~~~~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kk 67 (337)
|+--..+|.+++++||+|||++|+++|++||. +|..||+.| + |++.||+.||.. |....+.
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 45556799999999999999999999999997 699999999 6 999999999975 5444443
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=5.3e-13 Score=102.56 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 63 ADLKRGNITAEEEETIVKLHSSLG----NRWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 63 p~~kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
+...+++||++||.+|++++..|| .+|.+||++|||||.+||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 589999999999999999999998875
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=6.9e-13 Score=103.34 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 041081 64 DLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSH 111 (337)
Q Consensus 64 ~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~ 111 (337)
...+++||+|||++|+++|++||.+|..||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999988
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=5e-13 Score=105.11 Aligned_cols=69 Identities=19% Similarity=0.383 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccc----cCccccccccchhhhhcc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPKN----AGLLRCGKSCRLRWINYL-----RADLKRG-NITAEEEETIVKLHSS 84 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~~----l~~~Rt~~qCr~Rw~~~L-----~p~~kkg-~WT~EED~~Ll~lv~~ 84 (337)
++||+|||++|+++|++||.++|..|++. +++ |++.||++||++++ .|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999985 776 99999999999988 5776665 7888888888887653
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=6.8e-13 Score=108.61 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=65.7
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccc----Cccccccccchhhhhcc-----cCCCCCCCCCHHHHHH-
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNA----GLLRCGKSCRLRWINYL-----RADLKRGNITAEEEET- 77 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L-----~p~~kkg~WT~EED~~- 77 (337)
.++..++++||+|||++|+++|++||.++|..|+..+ ++ |+..+|++||++++ +|.++++.-+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 3567889999999999999999999999999999976 55 99999999999998 6889999877777655
Q ss_pred HHHHHHHcC
Q 041081 78 IVKLHSSLG 86 (337)
Q Consensus 78 Ll~lv~~~G 86 (337)
+++|...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.28 E-value=2.7e-12 Score=105.10 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=51.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHhcc-----cccCCCC
Q 041081 63 ADLKRGNITAEEEETIVKLHSSLGN-RWSLIAAQL----PGRTDNEIKNYWNSHLS-----RKTFSFT 120 (337)
Q Consensus 63 p~~kkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRt~~qcr~Rw~~~L~-----~~i~~~~ 120 (337)
+..++++||+|||+.|+++|++||. +|+.|++.+ ++||+.+||+||.++++ |.+++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~ 76 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGE 76 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCC
Confidence 4567899999999999999999996 999999975 89999999999999995 6665543
No 51
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-12 Score=101.37 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=48.9
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhc
Q 041081 7 CEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (337)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 60 (337)
+.+....+++||+|||++|+++|++|| ++|..||++|++ |++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 467778899999999999999999999 699999999998 9999999999998
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=7.4e-12 Score=98.41 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhcc
Q 041081 68 GNITAEEEETIVKLHSSLGN-RWSLIAAQ----LPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRt~~qcr~Rw~~~L~ 113 (337)
.+||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 48999999999999999996 99999996 899999999999999984
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-12 Score=104.32 Aligned_cols=55 Identities=22% Similarity=0.430 Sum_probs=51.3
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccC
Q 041081 7 CEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (337)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (337)
...|.+++++||+|||++|+++|..||. +|..||..|++ |+..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 4578999999999999999999999997 89999999998 9999999999998863
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=2.3e-12 Score=98.93 Aligned_cols=54 Identities=13% Similarity=0.358 Sum_probs=49.3
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCC---CCCcccccccCccccccccchhhhhccc
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGE---GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
+++.+.+++||++||++|+.+|..||. .+|.+||+.||+ |+..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 577888999999999999999999993 479999999998 999999999998764
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=4.8e-11 Score=88.49 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHH---hhCCCCCHHHHHHHHHHhcccc
Q 041081 66 KRGNITAEEEETIVKLHSSLGNRWSLIA---AQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA---~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
++.+||+|||+.|++.|++||.+|..|+ .++++||.-.+++||+++.+..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 5779999999999999999999999999 5679999999999999998754
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=5.7e-11 Score=95.26 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhccc
Q 041081 66 KRGNITAEEEETIVKLHSSLG----NRWSLIAAQLPGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~Rw~~~L~~ 114 (337)
.+++||.|||++|++++.+|| .+|..||++|||||.+||++||+.++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 367999999999999999997 5799999999999999999999998743
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=79.52 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 66 KRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
...+||++|++++++++..||.+|..||.+||+||..||+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999999999999999999999999986644
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.82 E-value=5.7e-10 Score=89.39 Aligned_cols=48 Identities=10% Similarity=0.325 Sum_probs=43.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccccccCccccccccchhhhhcc
Q 041081 13 KKGRWTAEEDEILTKYIRANGE---GSWRSLPKNAGLLRCGKSCRLRWINYL 61 (337)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (337)
.+++||+|||++|++++.+|+. ..|..||+.||+ |+..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3679999999999999999973 469999999998 99999999998874
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.77 E-value=5e-09 Score=83.82 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=57.4
Q ss_pred cccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhC-----CCCCHHHHHHHHHHhcccccC
Q 041081 49 CGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQL-----PGRTDNEIKNYWNSHLSRKTF 117 (337)
Q Consensus 49 t~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----pgRt~~qcr~Rw~~~L~~~i~ 117 (337)
...=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.+..+.
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345678999999976 79999999999999999999999999999 589999999999988765543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=3.5e-09 Score=78.48 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=44.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc---cccCccccccccchhhhhccc
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLP---KNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA---~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
-++++||+|||+.|+++|++||. +|..|+ .++++ |+..++++||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 36899999999999999999997 999999 56666 999999999998764
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=1.8e-08 Score=76.98 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhccc
Q 041081 64 DLKRGNITAEEEETIVKLHSSLG----NRWSLIAAQLPGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 64 ~~kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~Rw~~~L~~ 114 (337)
..+.+.||.|||++|.+++.+|+ .+|..||.+| |||.++|+.||+.++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 4799999998 99999999999988654
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.64 E-value=4e-08 Score=89.85 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhccc
Q 041081 66 KRGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~~ 114 (337)
...+||.||+.++++++.+||++|..||+.+++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999988754
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-08 Score=74.20 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhcc
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (337)
++..-...+||++|++++.+++.+||. +|..||..|++ |+..||+++|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 444556789999999999999999995 99999999998 99999999986543
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=4.3e-07 Score=69.54 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHhccc
Q 041081 67 RGNITAEEEETIVKLHSSLGN----RWSLIAAQLPGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRt~~qcr~Rw~~~L~~ 114 (337)
...||.+|+.+|.+++..|+. +|..||.++||||..+|+.||..+++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999983 699999999999999999999988654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.41 E-value=2.1e-07 Score=93.77 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 68 GNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
.+||.+|-.++++++.+||.+|..||.++++||..|||+.|.++-+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999987643
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.41 E-value=3e-07 Score=67.52 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CC-CHHHHHh-hCCCCCHHHHHHHHHHhcc
Q 041081 67 RGNITAEEEETIVKLHSSL--------GN-RWSLIAA-QLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~--------G~-~W~~IA~-~lpgRt~~qcr~Rw~~~L~ 113 (337)
+.+||+|||++|+++|..| |+ -|..++. .+|.+|-.++|+||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 53 5999999 7999999999999999885
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=8.8e-08 Score=73.16 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCCcccccccCccccccccchhhhhccc
Q 041081 10 IGLKKGRWTAEEDEILTKYIRANGE---GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
...+.+.||.|||++|.+++.+|+. ..|..||..+ + |+..||+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 3456789999999999999999984 4699999998 5 999999999987654
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.33 E-value=1.1e-07 Score=69.99 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCccccc-ccCccccccccchhhhhccc
Q 041081 14 KGRWTAEEDEILTKYIRAN--------GEGSWRSLPK-NAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~--------G~~~W~~IA~-~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
|.+||+|||++|++.|.+| |..-|+.+|+ .++. ++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 7887 999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.16 E-value=4e-07 Score=69.69 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCcccccccCccccccccchhhhhccc
Q 041081 14 KGRWTAEEDEILTKYIRANGE---GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
...||.+|+.+|..++..|+. ++|..||..||+ |+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 357999999999999999985 469999999999 999999999988754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.02 E-value=1.6e-06 Score=79.40 Aligned_cols=49 Identities=24% Similarity=0.442 Sum_probs=44.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhccc
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
-...+||.||++++++++.+||. +|..||+.|++ |+..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34678999999999999999995 99999999998 999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.4e-05 Score=59.13 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=45.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHHh
Q 041081 62 RADLKRGNITAEEEETIVKLHSSLGNRWSLIAA-QLPGRTDNEIKNYWNSH 111 (337)
Q Consensus 62 ~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRt~~qcr~Rw~~~ 111 (337)
.|.++..+||+||-.+..+.+.+||.+|..|++ .|++||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 356778899999999999999999999999999 48999999999988654
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.96 E-value=8.8e-06 Score=64.34 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 69 NITAEEEETIVKLHSSLGN---RWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
-||.|||+.||...++-|. .|..||+.|.+|+.+|+++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 6999999999999999995 89999999999999999999998875
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.04 E-value=2.5e-06 Score=64.07 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 69 NITAEEEETIVKLHSSLGN---RWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
.||.|||+.|+..+++-|. .|..||+.| +|+++||.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 899999999 9999999999998864
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.73 E-value=5e-06 Score=63.42 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHH
Q 041081 67 RGNITAEEEETIVKLHSSLGN----RWSLIAAQLPGRTDNEIKNYWN 109 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRt~~qcr~Rw~ 109 (337)
..+||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 8999999999999999999884
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.68 E-value=5.4e-05 Score=72.32 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccch-------hhhhc---------------------------
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRL-------RWINY--------------------------- 60 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~-------Rw~~~--------------------------- 60 (337)
+.||..+...++.++.+||..+|..||..|++ ++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999899999999987 77765532 11000
Q ss_pred ---------------c-cCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 041081 61 ---------------L-RADLKRGNITAEEEETIVKLHSSLGN----RWSLIAA------------QLPGRTDNEIKNYW 108 (337)
Q Consensus 61 ---------------L-~p~~kkg~WT~EED~~Ll~lv~~~G~----~W~~IA~------------~lpgRt~~qcr~Rw 108 (337)
+ .+..+...||.+||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01224458999999999999999994 6999962 45789999999999
Q ss_pred HHhcc
Q 041081 109 NSHLS 113 (337)
Q Consensus 109 ~~~L~ 113 (337)
+.+|+
T Consensus 270 ~tLi~ 274 (304)
T 1ofc_X 270 NTLIT 274 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.64 E-value=9.6e-06 Score=61.87 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CCcccccccCccccccccchhhh
Q 041081 14 KGRWTAEEDEILTKYIRANGEG---SWRSLPKNAGLLRCGKSCRLRWI 58 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~---~W~~IA~~l~~~Rt~~qCr~Rw~ 58 (337)
...||.+|+++|..++..|+.+ .|.+||..||+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999754 69999999998 99999999985
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=4.5e-05 Score=56.42 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=44.9
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc-ccCccccccccchhhhh
Q 041081 8 EKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPK-NAGLLRCGKSCRLRWIN 59 (337)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~~Rt~~qCr~Rw~~ 59 (337)
-.|.++...||+||-++..+++.+||. +|..|++ .|+. |+..||.+-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 357888999999999999999999996 9999998 6888 999999987754
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.48 E-value=0.00021 Score=53.98 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHHh
Q 041081 67 RGNITAEEEETIVKLHSSLGNRWSLIAA-QLPGRTDNEIKNYWNSH 111 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRt~~qcr~Rw~~~ 111 (337)
..+||++|-.+..+.+..||.+|..|++ .||+||..+|...|...
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 4589999999999999999999999999 58999999999988743
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.45 E-value=0.00021 Score=56.92 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 041081 67 RGNITAEEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSH 111 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~ 111 (337)
...||++|..+..+.+..||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988644
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.40 E-value=0.00015 Score=57.69 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=49.0
Q ss_pred hhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHhhCC-----CCCHHHHHHHHHHhccccc
Q 041081 55 LRWINYLRADLKRGNITAEEEETIVKLHSSLGNRWSLIAAQLP-----GRTDNEIKNYWNSHLSRKT 116 (337)
Q Consensus 55 ~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp-----gRt~~qcr~Rw~~~L~~~i 116 (337)
+.|..+|. ...||.||-..|++|+++|+-+|..|+..+. .||..++|+||..+.+..+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34666664 3689999999999999999999999999873 7999999999998866543
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.38 E-value=1.9e-05 Score=63.05 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=43.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccC----ccccccccchhhhhccc
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAG----LLRCGKSCRLRWINYLR 62 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L~ 62 (337)
|+..+||.||+..|++++++|+. .|..|+..+. ..|+..+++.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 44589999999999999999997 9999999993 23999999999987653
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.02 E-value=0.00021 Score=72.05 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=42.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhc
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 60 (337)
....+||.+|.+++++++.+||. +|..||..|++ |+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34679999999999999999995 99999999998 9999999998764
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.94 E-value=0.00058 Score=52.99 Aligned_cols=48 Identities=13% Similarity=0.396 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHhhC----CCCCHHHHHHHHHHhccc
Q 041081 67 RGNITAEEEETIVKLHSSLG----------NRWSLIAAQL----PGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----------~~W~~IA~~l----pgRt~~qcr~Rw~~~L~~ 114 (337)
...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999987532 1599999997 379999999999988754
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.59 E-value=0.00067 Score=54.03 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhh
Q 041081 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWIN 59 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~ 59 (337)
...||++|.++..+++..||. +|..||+.|+. |+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence 367999999999999999995 99999999998 999999987743
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.56 E-value=0.00078 Score=50.76 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=39.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccc-ccCccccccccchhhhh
Q 041081 14 KGRWTAEEDEILTKYIRANGEGSWRSLPK-NAGLLRCGKSCRLRWIN 59 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~~Rt~~qCr~Rw~~ 59 (337)
...||++|-++..+++.+||. +|..|++ .|++ |+..+|..-|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 467999999999999999996 9999999 5888 999999987753
No 86
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.28 E-value=0.00068 Score=50.87 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCCcccccccCccccccccchhhhhccc
Q 041081 15 GRWTAEEDEILTKYIRANGE--GSWRSLPKNAGLLRCGKSCRLRWINYLR 62 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (337)
-.||.|||..|+...++.|. .-|..||+.+ + |++.|+..||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999885 3699999999 5 999999999988654
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.19 E-value=0.003 Score=56.34 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=25.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhC--CCCCcccccc
Q 041081 13 KKGRWTAEEDEILTKYIRANG--EGSWRSLPKN 43 (337)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G--~~~W~~IA~~ 43 (337)
....||..|=..|+.++.+|| .+.|..|+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d 38 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD 38 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 456799999999999999999 5689999754
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.06 E-value=0.00036 Score=54.20 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCcccccccC---ccccccccchhhhhccc
Q 041081 13 KKGRWTAEEDEILTKYIRANGE---------GSWRSLPKNAG---LLRCGKSCRLRWINYLR 62 (337)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~---------~~W~~IA~~l~---~~Rt~~qCr~Rw~~~L~ 62 (337)
+...||.+|-.+|+.+...+.. .-|..||..|. -.|++.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999975321 14999999874 23999999999988653
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.87 E-value=0.015 Score=56.85 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhc----------------------------------
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINY---------------------------------- 60 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~---------------------------------- 60 (337)
+.||.-+=..++.+..+||..+-..||..|.++++...++ +|..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999988999999997226664443 11111
Q ss_pred --------------c----cCC-CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHhh------------CCCCCHHHHH
Q 041081 61 --------------L----RAD-LKRGNITAEEEETIVKLHSSLG----NRWSLIAAQ------------LPGRTDNEIK 105 (337)
Q Consensus 61 --------------L----~p~-~kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~------------lpgRt~~qcr 105 (337)
| .+. .+...||.+||..||-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 011 1345799999999999999999 369999443 4679999999
Q ss_pred HHHHHhccc
Q 041081 106 NYWNSHLSR 114 (337)
Q Consensus 106 ~Rw~~~L~~ 114 (337)
.|...+|+-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988864
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.69 E-value=0.0034 Score=49.63 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCCcccccccCccccccccchhhhhcc
Q 041081 15 GRWTAEEDEILTKYIRANGE--GSWRSLPKNAGLLRCGKSCRLRWINYL 61 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (337)
-.||.|||..|+...++.|. ..|..||+.+++ |++.|+.+||+.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 34999999999999999875 479999999988 99999999998743
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.26 E-value=0.032 Score=49.58 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=33.1
Q ss_pred cccccCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccc
Q 041081 5 PCCEKIGLKKGRWTAEEDEILTKYIRANGEGSWRSLPKNA 44 (337)
Q Consensus 5 ~~~~k~~lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l 44 (337)
|++.++.-....||.+||..|+..|.+||.++|..|-.-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 5555666666779999999999999999999999986533
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.12 E-value=0.15 Score=37.78 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC---CHHHHHhhC--CCCCHHHHHHHHHHh
Q 041081 65 LKRGNITAEEEETIVKLHSSLGN---RWSLIAAQL--PGRTDNEIKNYWNSH 111 (337)
Q Consensus 65 ~kkg~WT~EED~~Ll~lv~~~G~---~W~~IA~~l--pgRt~~qcr~Rw~~~ 111 (337)
..+-.||+|.-+..+++|.++|. .+..|.+.| +|.|..+|+.+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34668999999999999999994 589999987 789999999887655
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.09 E-value=0.017 Score=45.85 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=41.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccccccC----ccccccccchhhhhcc
Q 041081 12 LKKGRWTAEEDEILTKYIRANGEGSWRSLPKNAG----LLRCGKSCRLRWINYL 61 (337)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L 61 (337)
|+...||.||...|++++++|.. .|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999997 9999998874 2389999999998764
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.49 E-value=0.41 Score=44.80 Aligned_cols=28 Identities=39% Similarity=0.648 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccc
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPK 42 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~ 42 (337)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999964
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=86.59 E-value=0.74 Score=43.78 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhc
Q 041081 68 GNITAEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHL 112 (337)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L 112 (337)
+.||..+...++.++.+|| .+|..||..|+|+|...|+..+.-..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3699999999999999999 59999999999999999976655444
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.92 E-value=1.4 Score=41.22 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHcC-CCHHHHHh
Q 041081 69 NITAEEEETIVKLHSSLG-NRWSLIAA 94 (337)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~ 94 (337)
.|+.+||..|+..|.+|| ..|.+|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 79999964
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=71.44 E-value=1.9 Score=31.81 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=32.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---CcccccccCc-cccccccchh
Q 041081 11 GLKKGRWTAEEDEILTKYIRANGEGS---WRSLPKNAGL-LRCGKSCRLR 56 (337)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~~---W~~IA~~l~~-~Rt~~qCr~R 56 (337)
...+-.||+|..+..+.+|++.|. + ++.|.+.|+- +.+..++.-+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSH 52 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASH 52 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHH
Confidence 345678999999999999999994 4 5677776652 1455555544
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.49 E-value=7.8 Score=31.18 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCCCHHHHHHHHHHhccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQLPGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRt~~qcr~Rw~~~L~~ 114 (337)
+|..+|...|. .|..||..|.--.+..+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37777877773 699999998433388999999999865
No 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=55.65 E-value=14 Score=29.76 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=28.4
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCCC----HHHHHHHHHHhccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQLPGRT----DNEIKNYWNSHLSR 114 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRt----~~qcr~Rw~~~L~~ 114 (337)
+|..+|...|. .|..||..|.--. +.++|..|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777777773 6999999983221 56789999988865
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.78 E-value=16 Score=28.62 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCC-C---HHHHHHHHHHhccc
Q 041081 77 TIVKLHSSLG--------NRWSLIAAQLPGR-T---DNEIKNYWNSHLSR 114 (337)
Q Consensus 77 ~Ll~lv~~~G--------~~W~~IA~~lpgR-t---~~qcr~Rw~~~L~~ 114 (337)
+|..+|...| +.|..||..|.-- + +.++|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3667777776 3799999999322 2 46889999988754
No 101
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.42 E-value=86 Score=24.29 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhccc------CCCCCCCCCHHHHHHHHHHHHHcCCC
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLR------ADLKRGNITAEEEETIVKLHSSLGNR 88 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~------p~~kkg~WT~EED~~Ll~lv~~~G~~ 88 (337)
...|.++-..++.++. -|. .-..||..++ .+...++ ||..... +.......+++++..|+++...-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4678888888888773 464 6788998886 3443333 2322211 11223357888888888873332245
Q ss_pred HHHHHhhCCC-CCHHHHHHH
Q 041081 89 WSLIAAQLPG-RTDNEIKNY 107 (337)
Q Consensus 89 W~~IA~~lpg-Rt~~qcr~R 107 (337)
=.+|+..+.- -+...|...
T Consensus 80 ~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHH
Confidence 6788888722 455555543
No 102
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=48.73 E-value=19 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCC-CC---HHHHHHHHHHhcccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQLPG-RT---DNEIKNYWNSHLSRK 115 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-Rt---~~qcr~Rw~~~L~~~ 115 (337)
+|..+|..+|. .|.+||..|.- .+ +.++|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777777763 79999999832 22 468899999998653
No 103
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.46 E-value=20 Score=29.07 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.7
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCC--C--HHHHHHHHHHhccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQLPGR--T--DNEIKNYWNSHLSR 114 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgR--t--~~qcr~Rw~~~L~~ 114 (337)
+|..+|.+.|. .|..|+..|.-- + +.++|..|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 37777777773 699999998321 2 35789999988865
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=47.55 E-value=24 Score=29.52 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHHHHcCC--------CHHHHHhhC--CCC---CHHHHHHHHHHhcccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQL--PGR---TDNEIKNYWNSHLSRK 115 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~l--pgR---t~~qcr~Rw~~~L~~~ 115 (337)
+|..+|...|. .|..||..| +.. .+.++|..|..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 37777777773 699999998 332 2568999999998764
No 105
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.80 E-value=21 Score=29.11 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=49.2
Q ss_pred ccCCCCHHHH--HHHHHHHHHhCCCCCcccccccCccccccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHHcCC---
Q 041081 13 KKGRWTAEED--EILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEETIVKLHSSLGN--- 87 (337)
Q Consensus 13 kkg~WT~EED--~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~~~G~--- 87 (337)
-+.+|.+.+. +.|.+..+..|. .-..|+. +++ |.- +. -+|..+|.+.|.
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l--------DL---------------~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL--------DL---------------ACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC--------CH---------------HHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec--------cH---------------HHHHHHHHHcCcHHH
Confidence 3567887775 457777777775 5544443 332 211 11 137777888773
Q ss_pred -----CHHHHHhhC--CCCC---HHHHHHHHHHhccc
Q 041081 88 -----RWSLIAAQL--PGRT---DNEIKNYWNSHLSR 114 (337)
Q Consensus 88 -----~W~~IA~~l--pgRt---~~qcr~Rw~~~L~~ 114 (337)
.|..||..| |.-. +..+|..|..+|-+
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 699999998 4322 46789999988865
No 106
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.58 E-value=24 Score=28.74 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=29.0
Q ss_pred HHHHHHHHcCC--------CHHHHHhhC--CCC---CHHHHHHHHHHhccc
Q 041081 77 TIVKLHSSLGN--------RWSLIAAQL--PGR---TDNEIKNYWNSHLSR 114 (337)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~l--pgR---t~~qcr~Rw~~~L~~ 114 (337)
+|..+|...|. .|..||..| +.. .+.++|..|..+|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777877773 799999998 332 257899999999876
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.90 E-value=11 Score=30.72 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHHHHHcCC--------CHHHHHhhCCCCCHHHHHHHHHHhcccc
Q 041081 78 IVKLHSSLGN--------RWSLIAAQLPGRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 78 Ll~lv~~~G~--------~W~~IA~~lpgRt~~qcr~Rw~~~L~~~ 115 (337)
|..+|.+.|. .|..||..|.--.+..+|..|..+|-|-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6666666662 5999999983333899999999998763
No 108
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=43.25 E-value=14 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=26.7
Q ss_pred HHHHHHHcC--------CCHHHHHhhCC--C-C-CHHHHHHHHHHhccc
Q 041081 78 IVKLHSSLG--------NRWSLIAAQLP--G-R-TDNEIKNYWNSHLSR 114 (337)
Q Consensus 78 Ll~lv~~~G--------~~W~~IA~~lp--g-R-t~~qcr~Rw~~~L~~ 114 (337)
|..+|...| +.|.+|+..|. . - .+.++|..|..+|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 667777665 37999999982 2 1 256889999888754
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.14 E-value=7.3 Score=31.91 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHHHHHHhCC-------CCCcccccccCccccc----cccchhhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 041081 24 ILTKYIRANGE-------GSWRSLPKNAGLLRCG----KSCRLRWINYLRADLKRGNITAEEEETIVKLHS 83 (337)
Q Consensus 24 ~L~~~V~~~G~-------~~W~~IA~~l~~~Rt~----~qCr~Rw~~~L~p~~kkg~WT~EED~~Ll~lv~ 83 (337)
.|..+|.+.|- +.|..||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 67788888873 4799999999754322 356788888887642 388899999887665
No 110
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=41.16 E-value=36 Score=33.13 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHhcccc
Q 041081 68 GNITAEEEETIVKLHSSLG-NRWSLIAAQLP-GRTDNEIKNYWNSHLSRK 115 (337)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRt~~qcr~Rw~~~L~~~ 115 (337)
+.||.-+=..++.++.+|| .+-..||..|. ++|...|+ +|...+=.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHh
Confidence 3699999999999999999 57999999997 99999999 455444333
No 111
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=35.58 E-value=44 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhc
Q 041081 73 EEEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHL 112 (337)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L 112 (337)
+.+..++.++-..|....+||..+ |-+...|+.+....+
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 445556666667788999999999 678888887766543
No 112
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.22 E-value=23 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCC--CC---CHHHHHHHHHHhcccc
Q 041081 77 TIVKLHSSLG--------NRWSLIAAQLP--GR---TDNEIKNYWNSHLSRK 115 (337)
Q Consensus 77 ~Ll~lv~~~G--------~~W~~IA~~lp--gR---t~~qcr~Rw~~~L~~~ 115 (337)
+|..+|...| +.|.+||..|. .. .+.++|..|..+|-+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3677777776 37999999982 21 2467999999998653
No 113
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.02 E-value=41 Score=27.81 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccccCC
Q 041081 73 EEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFS 118 (337)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~ 118 (337)
+-|.+|+.++++.| -.+..||+.+ |-+...|+.|...+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45888999998888 5899999999 889999999999998877654
No 114
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.75 E-value=1.7e+02 Score=23.47 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccchhhhhc------ccCCCC----CCCCCHHHHHHHHHHHHH
Q 041081 15 GRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINY------LRADLK----RGNITAEEEETIVKLHSS 84 (337)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr~Rw~~~------L~p~~k----kg~WT~EED~~Ll~lv~~ 84 (337)
.+.|.++-..++.++. .|. .-..||..++ .+...+ .||.+. +.+... ....+.+..+.|++++..
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999888888884 464 7788999886 333333 233332 222211 335788888888888876
Q ss_pred cC-CCHHHHHhhC---------CCCCHHHHHHHHHHhccc
Q 041081 85 LG-NRWSLIAAQL---------PGRTDNEIKNYWNSHLSR 114 (337)
Q Consensus 85 ~G-~~W~~IA~~l---------pgRt~~qcr~Rw~~~L~~ 114 (337)
.. -.-.+|+..+ ..-+...|+.....++..
T Consensus 99 ~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 99 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 54 3445566554 135666777666555543
No 115
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.54 E-value=26 Score=30.35 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 041081 10 IGLKKGRWTAEEDEILT--------KYIRANGE 34 (337)
Q Consensus 10 ~~lkkg~WT~EED~~L~--------~~V~~~G~ 34 (337)
|.-.+|-||+++|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 45678999999999886 47777774
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.21 E-value=9.6 Score=30.65 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC-------CCCcccccccCccccccccchhhhhcccC
Q 041081 24 ILTKYIRANGE-------GSWRSLPKNAGLLRCGKSCRLRWINYLRA 63 (337)
Q Consensus 24 ~L~~~V~~~G~-------~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (337)
.|..+|.+.|- +.|..||..|+. -.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 46777777763 379999999987 4477788888888754
No 117
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.06 E-value=45 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHhhCCCCCHHHHHHHHHHhc
Q 041081 73 EEEETIVKLHSS----LGNRWSLIAAQLPGRTDNEIKNYWNSHL 112 (337)
Q Consensus 73 EED~~Ll~lv~~----~G~~W~~IA~~lpgRt~~qcr~Rw~~~L 112 (337)
+.+..++.+.-. .|..+.+||..| |-+...|+.+....+
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKAL 55 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 334445555444 567999999999 778888887766554
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=32.62 E-value=33 Score=29.64 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=18.7
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHcC
Q 041081 63 ADLKRGNITAEEEETIV--------KLHSSLG 86 (337)
Q Consensus 63 p~~kkg~WT~EED~~Ll--------~lv~~~G 86 (337)
|.-..|-||.++|+.|. +|+++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 45678999999999887 5566665
No 119
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.08 E-value=51 Score=22.89 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHHHH----HcCCCHHHHHhhCCCCCHHHHHHHHHHhcc
Q 041081 74 EEETIVKLHS----SLGNRWSLIAAQLPGRTDNEIKNYWNSHLS 113 (337)
Q Consensus 74 ED~~Ll~lv~----~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L~ 113 (337)
.+..++.+.- ..|....+||..| |-+...|+.+....++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444444443 2467999999999 7888888888776653
No 120
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.84 E-value=2e+02 Score=22.72 Aligned_cols=79 Identities=9% Similarity=-0.000 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccccccc---hhhhhc--ccCCCC----CCCCCHHHHHHHHHHHHH
Q 041081 14 KGRWTAEEDEILTKYIRANGEGSWRSLPKNAGLLRCGKSCR---LRWINY--LRADLK----RGNITAEEEETIVKLHSS 84 (337)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~~Rt~~qCr---~Rw~~~--L~p~~k----kg~WT~EED~~Ll~lv~~ 84 (337)
..+.|.++-..++.++. .|. .-.+||..++- +...++ .+|... +.+... ....+.+..+.|++++..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 35789999888888884 564 67889998863 333332 233221 222222 235788888888888877
Q ss_pred cC-CCHHHHHhhC
Q 041081 85 LG-NRWSLIAAQL 96 (337)
Q Consensus 85 ~G-~~W~~IA~~l 96 (337)
.. ..-.+|+..+
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 54 2344565554
No 121
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.42 E-value=1.7e+02 Score=24.42 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhcccccCC
Q 041081 72 AEEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKTFS 118 (337)
Q Consensus 72 ~EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i~~ 118 (337)
.+-|.+|+.+++..| ..+..||+.+ |-+...|+.|...+.+..+.+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 355778888888888 5899999999 679999999999888777654
No 122
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.85 E-value=81 Score=23.22 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhc
Q 041081 74 EEETIVKLHSSLGNRWSLIAAQLPGRTDNEIKNYWNSHL 112 (337)
Q Consensus 74 ED~~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~Rw~~~L 112 (337)
.+..++.++...|-.-.+||..| |-+...|+.|....+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44455666566678999999999 788888888876554
No 123
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.71 E-value=1.4e+02 Score=23.90 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhccccc
Q 041081 73 EEEETIVKLHSSLG-NRWSLIAAQLPGRTDNEIKNYWNSHLSRKT 116 (337)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~Rw~~~L~~~i 116 (337)
+-|.+|+.+++..| ..+..||+.+ |-+...|+.|...+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667888888887 5999999999 6789999999988876554
Done!