Query 041082
Match_columns 639
No_of_seqs 493 out of 4521
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.2E-50 3.2E-54 457.9 28.3 393 6-408 9-480 (768)
2 4eco_A Uncharacterized protein 100.0 5.5E-47 1.9E-51 425.2 28.1 407 9-434 30-598 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.9E-45 6.6E-50 419.8 33.6 401 8-434 268-838 (876)
4 3rgz_A Protein brassinosteroid 100.0 2E-44 6.9E-49 413.5 26.1 344 53-408 270-694 (768)
5 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-41 1.1E-45 345.0 19.9 291 7-357 4-302 (313)
6 3t6q_A CD180 antigen; protein- 100.0 1E-39 3.5E-44 365.6 31.7 361 33-407 3-438 (606)
7 3v47_A TOLL-like receptor 5B a 100.0 5.8E-40 2E-44 354.4 26.8 363 39-410 7-411 (455)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8.1E-40 2.8E-44 366.4 27.5 356 52-410 32-537 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 3E-39 1E-43 357.5 26.7 388 38-435 2-509 (549)
10 3v47_A TOLL-like receptor 5B a 100.0 9.4E-39 3.2E-43 345.0 28.1 366 56-434 14-406 (455)
11 4eco_A Uncharacterized protein 100.0 1.2E-38 4.1E-43 357.5 26.4 343 52-408 206-601 (636)
12 3t6q_A CD180 antigen; protein- 100.0 8.9E-38 3E-42 349.8 32.6 356 52-410 57-516 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-38 2.8E-42 362.3 30.3 319 39-360 13-376 (844)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-37 4.5E-42 353.3 30.9 353 53-407 50-493 (680)
15 2z63_A TOLL-like receptor 4, v 100.0 9.8E-38 3.3E-42 346.9 28.7 358 52-410 28-510 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-38 2.1E-42 344.5 24.9 341 52-410 21-460 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-37 8.2E-42 348.0 29.1 361 44-409 35-557 (635)
18 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-37 8.6E-42 346.2 28.2 370 56-434 15-532 (606)
19 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-36 7E-41 343.4 31.4 345 54-410 250-625 (680)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-36 4.3E-41 337.1 26.5 350 52-410 52-489 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 9.3E-37 3.2E-41 348.2 25.0 341 52-409 448-842 (876)
22 2id5_A Lingo-1, leucine rich r 100.0 5.1E-36 1.8E-40 325.5 27.6 310 60-408 19-334 (477)
23 2z7x_B TOLL-like receptor 1, v 100.0 8.8E-36 3E-40 327.3 28.1 361 55-434 3-455 (520)
24 2z63_A TOLL-like receptor 4, v 100.0 1.5E-35 5E-40 329.3 27.7 369 57-434 12-505 (570)
25 3j0a_A TOLL-like receptor 5; m 100.0 1E-35 3.5E-40 344.7 25.5 345 52-408 48-518 (844)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-35 1.6E-39 324.5 28.3 360 55-434 34-484 (562)
27 3oja_B Anopheles plasmodium-re 100.0 7E-35 2.4E-39 325.0 26.5 305 74-408 49-359 (597)
28 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-35 2E-39 323.1 25.3 371 46-435 3-485 (549)
29 3o6n_A APL1; leucine-rich repe 100.0 1.2E-34 4E-39 306.4 25.8 305 74-408 43-353 (390)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-33 3.7E-38 306.1 29.9 320 53-411 69-392 (466)
31 4fcg_A Uncharacterized protein 100.0 1.6E-34 5.5E-39 297.2 17.9 277 6-357 24-312 (328)
32 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-33 1.3E-37 313.8 28.4 395 27-434 11-553 (635)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-32 4.9E-37 295.3 29.4 311 52-409 42-370 (457)
34 4fmz_A Internalin; leucine ric 100.0 5.3E-32 1.8E-36 281.3 31.5 302 53-407 45-346 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 9E-33 3.1E-37 300.0 25.6 294 79-411 14-313 (477)
36 1jl5_A Outer protein YOPM; leu 100.0 6.7E-33 2.3E-37 297.6 23.1 322 52-410 11-373 (454)
37 1o6v_A Internalin A; bacterial 100.0 5.8E-32 2E-36 292.5 29.8 296 52-384 90-389 (466)
38 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-32 1.4E-36 291.8 27.4 306 66-410 32-355 (457)
39 3o6n_A APL1; leucine-rich repe 100.0 1.4E-32 4.8E-37 290.4 23.4 304 52-385 45-354 (390)
40 3oja_B Anopheles plasmodium-re 100.0 9.4E-33 3.2E-37 307.8 22.9 326 29-385 9-360 (597)
41 1xku_A Decorin; proteoglycan, 100.0 1.4E-31 4.9E-36 276.0 29.2 287 55-405 34-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-32 1.9E-36 279.3 26.0 286 55-405 36-331 (332)
43 4fmz_A Internalin; leucine ric 100.0 4.3E-31 1.5E-35 274.4 28.8 277 52-383 66-346 (347)
44 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-32 4.1E-37 281.5 14.3 249 76-405 50-302 (313)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-30 5E-35 268.6 23.5 286 36-381 29-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 264.1 26.5 286 37-381 28-330 (330)
47 1jl5_A Outer protein YOPM; leu 100.0 1.3E-29 4.4E-34 272.0 30.0 304 52-412 91-414 (454)
48 2z80_A TOLL-like receptor 2, v 100.0 6.6E-30 2.3E-34 266.1 19.3 281 33-363 23-318 (353)
49 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-33 2.5E-37 299.3 -3.6 351 52-410 3-414 (461)
50 4asz_A BDNF/NT-3 growth factor 100.0 2.1E-30 7.1E-35 260.9 10.4 202 407-631 24-290 (299)
51 2z66_A Variable lymphocyte rec 100.0 4.6E-29 1.6E-33 254.3 19.9 288 37-393 4-297 (306)
52 4aoj_A High affinity nerve gro 100.0 4E-30 1.4E-34 262.5 11.9 202 407-631 52-320 (329)
53 4gt4_A Tyrosine-protein kinase 100.0 4.2E-30 1.5E-34 259.8 11.3 199 407-628 37-304 (308)
54 3g06_A SSPH2 (leucine-rich rep 100.0 1.4E-28 5E-33 272.0 24.2 289 28-369 11-307 (622)
55 3omv_A RAF proto-oncogene seri 100.0 6.4E-30 2.2E-34 257.4 11.0 206 407-632 47-302 (307)
56 3hmm_A TGF-beta receptor type- 100.0 3.1E-29 1.1E-33 254.0 15.4 212 407-631 14-298 (303)
57 3zyi_A Leucine-rich repeat-con 100.0 5.7E-28 1.9E-32 260.1 24.2 244 57-359 59-303 (452)
58 1z7x_W Ribonuclease inhibitor; 100.0 5.7E-31 1.9E-35 284.5 -1.6 326 53-385 29-413 (461)
59 2z80_A TOLL-like receptor 2, v 100.0 3.6E-28 1.2E-32 252.9 17.4 279 75-408 30-315 (353)
60 3zyj_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 252.7 24.9 245 56-359 47-292 (440)
61 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.8E-32 244.1 19.5 249 79-385 10-263 (306)
62 1wwl_A Monocyte differentiatio 100.0 5.8E-29 2E-33 254.2 8.7 251 72-384 39-310 (312)
63 4fcg_A Uncharacterized protein 100.0 3.1E-27 1.1E-31 242.8 20.5 281 23-381 26-312 (328)
64 3zyi_A Leucine-rich repeat-con 99.9 1.3E-26 4.6E-31 249.4 25.7 248 77-382 55-302 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 5.8E-31 247.7 25.9 247 78-382 45-291 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-28 4.7E-33 252.0 8.9 255 80-379 14-271 (317)
67 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-27 1.8E-31 236.5 20.3 223 55-334 14-237 (285)
68 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-27 9.7E-32 238.5 15.9 267 79-403 14-283 (285)
69 4ase_A Vascular endothelial gr 99.9 7.6E-28 2.6E-32 247.6 10.6 203 407-631 75-348 (353)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-25 4.8E-30 248.1 28.9 268 76-395 40-309 (622)
71 1wwl_A Monocyte differentiatio 99.9 1E-28 3.5E-33 252.3 2.0 253 52-360 43-310 (312)
72 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-28 9.7E-33 249.7 5.2 255 53-354 11-270 (317)
73 3oja_A Leucine-rich immune mol 99.9 4.3E-27 1.5E-31 254.9 12.6 236 75-378 33-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 1.5E-27 5.1E-32 258.5 9.0 233 53-353 35-269 (487)
75 2o6q_A Variable lymphocyte rec 99.9 4.1E-25 1.4E-29 220.7 22.4 170 37-228 2-171 (270)
76 4fih_A Serine/threonine-protei 99.9 2E-25 6.8E-30 227.5 10.9 194 407-623 85-323 (346)
77 2z62_A TOLL-like receptor 4, v 99.9 7.4E-24 2.5E-28 212.3 22.0 147 61-228 16-163 (276)
78 3fpq_A Serine/threonine-protei 99.9 9.4E-25 3.2E-29 218.1 13.3 197 407-623 37-282 (290)
79 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.5E-28 210.5 21.4 206 101-360 29-238 (276)
80 4b9d_A Serine/threonine-protei 99.9 2.4E-25 8.1E-30 227.3 7.1 194 407-623 35-276 (350)
81 3m19_A Variable lymphocyte rec 99.9 1.5E-23 5.1E-28 207.0 18.4 186 38-229 3-194 (251)
82 4fie_A Serine/threonine-protei 99.9 1.2E-24 4.1E-29 227.3 10.7 194 407-623 162-400 (423)
83 3uim_A Brassinosteroid insensi 99.9 8E-24 2.7E-28 217.5 14.5 216 407-628 41-309 (326)
84 2qkw_B Protein kinase; three-h 99.9 1.6E-23 5.5E-28 214.8 16.6 215 407-630 50-315 (321)
85 2o6q_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 203.4 21.8 198 33-230 7-221 (270)
86 4g3f_A NF-kappa-beta-inducing 99.9 1.3E-24 4.3E-29 220.9 6.1 198 407-631 69-317 (336)
87 3ogk_B Coronatine-insensitive 99.9 2.1E-25 7.2E-30 248.7 0.1 357 52-411 73-530 (592)
88 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.4E-27 202.9 21.4 133 72-228 6-138 (290)
89 3rfs_A Internalin B, repeat mo 99.9 3.6E-23 1.2E-27 206.8 15.4 229 100-395 19-247 (272)
90 1p9a_G Platelet glycoprotein I 99.9 3.8E-22 1.3E-26 201.0 21.6 113 294-407 96-208 (290)
91 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.8E-27 203.2 16.6 172 53-228 42-219 (272)
92 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.7E-27 197.9 17.2 139 67-228 25-170 (239)
93 3ogk_B Coronatine-insensitive 99.9 5.1E-24 1.7E-28 237.5 5.8 387 38-434 39-499 (592)
94 2ast_B S-phase kinase-associat 99.9 4.5E-24 1.5E-28 220.3 3.5 163 39-224 36-205 (336)
95 3goz_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 222.2 3.6 107 56-162 2-123 (362)
96 3hyh_A Carbon catabolite-derep 99.9 3.2E-23 1.1E-27 205.2 8.6 191 407-623 24-262 (275)
97 3cvr_A Invasion plasmid antige 99.9 1.5E-22 5.3E-27 221.1 14.5 215 29-321 33-253 (571)
98 4glp_A Monocyte differentiatio 99.9 2E-22 7E-27 205.4 13.5 199 100-336 91-308 (310)
99 4aw0_A HPDK1, 3-phosphoinositi 99.9 2.9E-23 9.8E-28 208.4 6.5 191 407-622 43-283 (311)
100 3goz_A Leucine-rich repeat-con 99.9 8.9E-24 3E-28 220.4 2.9 82 80-161 2-93 (362)
101 3soc_A Activin receptor type-2 99.9 2.4E-22 8.3E-27 206.0 13.4 212 407-631 35-319 (322)
102 4glp_A Monocyte differentiatio 99.9 4.4E-22 1.5E-26 202.9 14.9 219 52-311 64-307 (310)
103 3q4u_A Activin receptor type-1 99.9 7.8E-22 2.7E-26 200.1 15.5 207 407-628 19-300 (301)
104 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.2E-28 220.7 2.9 251 68-363 24-320 (386)
105 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.4E-28 220.1 3.2 137 251-387 160-320 (386)
106 3ubd_A Ribosomal protein S6 ki 99.9 2.7E-23 9.2E-28 208.6 3.6 187 407-618 35-271 (304)
107 4g31_A Eukaryotic translation 99.9 6.5E-23 2.2E-27 206.5 5.9 209 407-623 16-279 (299)
108 3ugc_A Tyrosine-protein kinase 99.9 1.2E-22 4E-27 205.6 7.5 215 407-632 21-293 (295)
109 2ast_B S-phase kinase-associat 99.9 7.8E-23 2.7E-27 211.0 6.1 256 77-392 48-315 (336)
110 2o6s_A Variable lymphocyte rec 99.9 3.4E-21 1.1E-25 184.3 16.0 187 36-274 3-189 (208)
111 3cbl_A C-FES, proto-oncogene t 99.9 4.2E-22 1.4E-26 208.9 9.7 202 407-631 125-375 (377)
112 3s95_A LIMK-1, LIM domain kina 99.9 3.3E-22 1.1E-26 203.9 8.6 224 407-633 21-285 (310)
113 2xwt_C Thyrotropin receptor; s 99.9 3.8E-21 1.3E-25 188.2 15.7 185 91-335 25-218 (239)
114 2nru_A Interleukin-1 receptor- 99.9 2.5E-21 8.4E-26 197.0 14.7 212 407-630 42-306 (307)
115 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4E-25 192.0 19.0 83 74-162 39-121 (308)
116 2qol_A Ephrin receptor; recept 99.8 2.3E-22 8E-27 210.3 5.2 202 407-631 56-310 (373)
117 1qcf_A Haematopoetic cell kina 99.8 7.7E-22 2.6E-26 212.1 8.5 200 407-630 199-444 (454)
118 3mdy_A Bone morphogenetic prot 99.8 5E-21 1.7E-25 197.5 14.1 210 407-631 48-332 (337)
119 4hcu_A Tyrosine-protein kinase 99.8 2.2E-21 7.5E-26 193.5 11.0 201 407-631 21-267 (269)
120 2psq_A Fibroblast growth facto 99.8 5.4E-21 1.8E-25 199.8 14.4 203 407-632 92-366 (370)
121 3op5_A Serine/threonine-protei 99.8 6E-22 2.1E-26 206.8 6.9 211 407-631 46-330 (364)
122 3m19_A Variable lymphocyte rec 99.8 2.9E-20 9.9E-25 183.3 18.6 156 253-408 38-193 (251)
123 1h6u_A Internalin H; cell adhe 99.8 2E-20 6.8E-25 190.3 17.8 209 128-384 23-231 (308)
124 3kul_A Ephrin type-A receptor 99.8 6.4E-22 2.2E-26 203.1 6.8 202 407-631 60-314 (325)
125 3p86_A Serine/threonine-protei 99.8 3.4E-21 1.2E-25 196.2 12.0 204 407-631 48-299 (309)
126 2p1m_B Transport inhibitor res 99.8 1.5E-22 5E-27 225.8 1.9 344 52-408 66-495 (594)
127 1opk_A P150, C-ABL, proto-onco 99.8 3.9E-21 1.3E-25 208.7 13.0 198 407-628 231-476 (495)
128 1k9a_A Carboxyl-terminal SRC k 99.8 7.6E-22 2.6E-26 211.8 7.1 198 407-630 204-445 (450)
129 3e6j_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 180.3 17.6 164 33-230 12-175 (229)
130 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.4E-25 195.4 15.9 191 38-229 7-217 (350)
131 3gxj_A TGF-beta receptor type- 99.8 4.2E-22 1.4E-26 202.2 3.8 210 407-631 14-298 (303)
132 3poz_A Epidermal growth factor 99.8 2.9E-21 1E-25 198.4 10.0 202 407-631 26-279 (327)
133 3lb7_A RAF proto-oncogene seri 99.8 3.9E-21 1.3E-25 195.6 10.2 206 407-632 47-302 (307)
134 2c30_A Serine/threonine-protei 99.8 8E-21 2.7E-25 194.6 12.4 194 407-623 56-294 (321)
135 1fmk_A C-SRC, P60-SRC, tyrosin 99.8 3E-21 1E-25 207.2 9.6 199 407-629 195-439 (452)
136 3g2f_A Bone morphogenetic prot 99.8 1.7E-21 5.9E-26 200.9 7.4 216 407-636 24-324 (336)
137 2w1i_A JAK2; chromosomal rearr 99.8 3.5E-21 1.2E-25 197.8 9.6 211 407-632 52-324 (326)
138 1b6c_B TGF-B superfamily recep 99.8 2.7E-20 9.4E-25 192.3 16.0 210 407-631 53-337 (342)
139 3gen_A Tyrosine-protein kinase 99.8 6.7E-21 2.3E-25 191.4 11.0 200 407-630 35-280 (283)
140 3vhe_A Vascular endothelial gr 99.8 4.9E-21 1.7E-25 199.5 10.2 203 407-631 33-356 (359)
141 4ay9_X Follicle-stimulating ho 99.8 9.5E-20 3.3E-24 188.9 19.4 104 56-162 13-118 (350)
142 3sxs_A Cytoplasmic tyrosine-pr 99.8 8.5E-22 2.9E-26 196.3 3.7 201 407-631 19-265 (268)
143 3tt0_A Basic fibroblast growth 99.8 1.4E-20 4.8E-25 197.7 12.9 202 407-631 80-353 (382)
144 2eva_A TAK1 kinase - TAB1 chim 99.8 1.1E-20 3.7E-25 192.3 11.6 204 407-631 19-264 (307)
145 3kex_A Receptor tyrosine-prote 99.8 1.2E-20 4E-25 193.7 12.0 202 407-631 24-277 (325)
146 2ozo_A Tyrosine-protein kinase 99.8 2.2E-21 7.4E-26 215.8 6.8 203 407-632 347-600 (613)
147 4f0f_A Serine/threonine-protei 99.8 1.3E-20 4.4E-25 189.8 11.8 204 407-628 30-287 (287)
148 3lxl_A Tyrosine-protein kinase 99.8 3.2E-21 1.1E-25 198.2 6.7 210 407-631 34-304 (327)
149 3cc6_A Protein tyrosine kinase 99.8 2.6E-20 9E-25 186.9 13.0 206 407-635 23-278 (281)
150 3fxz_A Serine/threonine-protei 99.8 1.6E-20 5.6E-25 190.0 11.6 194 407-623 31-269 (297)
151 1luf_A Muscle-specific tyrosin 99.8 9.6E-21 3.3E-25 195.9 9.9 206 407-635 58-340 (343)
152 4b99_A Mitogen-activated prote 99.8 1.5E-20 5E-25 196.8 11.3 117 407-528 65-210 (398)
153 3t9t_A Tyrosine-protein kinase 99.8 1.2E-20 4.1E-25 187.8 10.2 200 407-630 19-264 (267)
154 1mp8_A Focal adhesion kinase 1 99.8 1.9E-20 6.6E-25 187.9 11.6 203 407-632 26-278 (281)
155 1rjb_A FL cytokine receptor; k 99.8 2.5E-20 8.6E-25 192.9 12.4 207 407-635 56-339 (344)
156 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.8E-24 198.5 18.1 189 77-347 60-255 (571)
157 1u59_A Tyrosine-protein kinase 99.8 3.4E-20 1.2E-24 186.7 12.8 205 407-634 21-276 (287)
158 1csn_A Casein kinase-1; phosph 99.8 3.3E-20 1.1E-24 187.7 12.4 205 407-632 21-285 (298)
159 1qpc_A LCK kinase; alpha beta 99.8 2.4E-20 8.3E-25 186.9 11.1 202 407-632 24-271 (279)
160 2h8h_A Proto-oncogene tyrosine 99.8 7E-21 2.4E-25 208.6 7.7 199 407-629 278-522 (535)
161 3l9p_A Anaplastic lymphoma kin 99.8 1.4E-20 4.8E-25 196.4 9.6 202 407-631 82-346 (367)
162 4hgt_A Casein kinase I isoform 99.8 4.9E-20 1.7E-24 186.2 12.9 205 407-632 20-282 (296)
163 4e5w_A Tyrosine-protein kinase 99.8 3.4E-20 1.2E-24 188.0 11.6 212 407-629 32-301 (302)
164 3uzp_A CKI-delta, CKID, casein 99.8 4.5E-20 1.6E-24 186.5 12.2 204 407-631 20-281 (296)
165 3c1x_A Hepatocyte growth facto 99.8 3.8E-21 1.3E-25 200.9 4.2 203 407-632 100-357 (373)
166 2ivs_A Proto-oncogene tyrosine 99.8 5.7E-20 1.9E-24 187.5 12.7 201 407-630 34-311 (314)
167 3lxp_A Non-receptor tyrosine-p 99.8 2.5E-20 8.5E-25 190.7 10.0 210 407-632 42-312 (318)
168 2pvf_A Fibroblast growth facto 99.8 8.6E-20 2.9E-24 188.0 13.7 203 407-632 46-320 (334)
169 3dtc_A Mitogen-activated prote 99.8 5.7E-20 1.9E-24 183.3 11.9 200 407-628 18-271 (271)
170 2buj_A Serine/threonine-protei 99.8 2.7E-20 9.2E-25 190.3 9.5 203 407-630 40-306 (317)
171 3qup_A Tyrosine-protein kinase 99.8 3.9E-20 1.3E-24 189.6 10.7 202 407-631 34-299 (323)
172 3og7_A AKAP9-BRAF fusion prote 99.8 1.4E-20 4.8E-25 189.7 7.2 203 407-629 35-287 (289)
173 4f9c_A Cell division cycle 7-r 99.8 5.6E-20 1.9E-24 190.3 11.7 112 407-527 32-169 (361)
174 3brb_A Proto-oncogene tyrosine 99.8 9.1E-20 3.1E-24 186.0 13.1 203 407-632 45-310 (313)
175 2wqm_A Serine/threonine-protei 99.8 9.1E-20 3.1E-24 185.7 13.1 206 407-632 43-299 (310)
176 2p1m_B Transport inhibitor res 99.8 4.6E-22 1.6E-26 221.7 -4.9 344 52-408 105-520 (594)
177 3tki_A Serine/threonine-protei 99.8 4.8E-20 1.7E-24 188.9 10.4 195 407-623 18-261 (323)
178 4fl3_A Tyrosine-protein kinase 99.8 1E-20 3.4E-25 211.0 5.7 201 407-631 380-632 (635)
179 1t46_A HOMO sapiens V-KIT hard 99.8 6E-20 2E-24 187.2 11.0 203 407-631 34-308 (313)
180 3uto_A Twitchin; kinase, muscl 99.8 2.3E-20 8E-25 204.9 8.4 197 407-623 168-410 (573)
181 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 168.9 16.9 181 79-323 10-190 (208)
182 3lzb_A Epidermal growth factor 99.8 5.4E-20 1.8E-24 188.9 10.3 202 407-631 26-279 (327)
183 2v9t_B SLIT homolog 2 protein 99.8 4.9E-19 1.7E-23 170.6 16.3 151 57-228 16-166 (220)
184 2jii_A Serine/threonine-protei 99.8 3.3E-20 1.1E-24 192.6 8.7 207 407-632 53-338 (352)
185 4euu_A Serine/threonine-protei 99.8 4.2E-19 1.4E-23 181.6 16.6 219 407-629 20-308 (319)
186 3f66_A Hepatocyte growth facto 99.8 1.8E-20 6.1E-25 189.8 6.3 203 407-632 36-293 (298)
187 2izr_A Casein kinase I isoform 99.8 7.7E-20 2.6E-24 188.1 11.0 205 407-631 20-282 (330)
188 3sv0_A Casein kinase I-like; t 99.8 7.2E-20 2.5E-24 197.0 11.0 205 407-630 18-278 (483)
189 3kmu_A ILK, integrin-linked ki 99.8 7.1E-20 2.4E-24 182.5 10.1 203 407-630 21-270 (271)
190 1dce_A Protein (RAB geranylger 99.8 3.7E-22 1.3E-26 219.1 -7.2 217 73-353 346-567 (567)
191 4fvq_A Tyrosine-protein kinase 99.8 5.4E-20 1.8E-24 185.4 9.1 200 407-630 19-275 (289)
192 3fe3_A MAP/microtubule affinit 99.8 6.8E-20 2.3E-24 187.9 10.0 192 407-623 26-264 (328)
193 3kfa_A Tyrosine-protein kinase 99.8 1.1E-19 3.8E-24 182.9 11.3 201 407-631 24-272 (288)
194 3pls_A Macrophage-stimulating 99.8 4.5E-20 1.5E-24 186.8 8.1 204 407-632 32-289 (298)
195 2xir_A Vascular endothelial gr 99.8 1E-19 3.5E-24 185.8 10.5 204 407-632 38-312 (316)
196 2x4f_A Myosin light chain kina 99.8 6.1E-20 2.1E-24 191.9 8.8 197 407-623 100-342 (373)
197 4eut_A Serine/threonine-protei 99.8 4.6E-19 1.6E-23 187.0 15.4 219 407-629 20-308 (396)
198 2i1m_A Macrophage colony-stimu 99.8 1.8E-19 6.2E-24 185.5 12.1 204 407-632 57-328 (333)
199 1mqb_A Ephrin type-A receptor 99.8 3.6E-20 1.2E-24 190.7 6.7 203 407-632 55-311 (333)
200 1xbb_A Tyrosine-protein kinase 99.8 1.6E-19 5.4E-24 182.2 11.1 202 407-632 28-281 (291)
201 3niz_A Rhodanese family protei 99.8 1.9E-19 6.7E-24 183.4 11.9 212 407-623 32-300 (311)
202 1u46_A ACK-1, activated CDC42 99.8 2.2E-19 7.5E-24 181.0 11.8 203 407-631 29-285 (291)
203 3p1a_A MYT1 kinase, membrane-a 99.8 4.5E-20 1.5E-24 188.1 6.6 196 407-623 68-304 (311)
204 3v5w_A G-protein coupled recep 99.8 1.4E-19 4.8E-24 197.7 10.8 194 407-622 200-448 (689)
205 2zv2_A Calcium/calmodulin-depe 99.8 2.7E-19 9.1E-24 181.2 12.0 193 407-623 24-292 (298)
206 1byg_A CSK, protein (C-termina 99.8 1.6E-20 5.6E-25 188.1 3.1 199 407-631 32-274 (278)
207 3ll6_A Cyclin G-associated kin 99.8 2.5E-19 8.6E-24 184.5 11.8 200 407-631 39-309 (337)
208 2a19_B Interferon-induced, dou 99.8 1.4E-19 4.6E-24 181.8 9.3 197 407-635 22-279 (284)
209 1tki_A Titin; serine kinase, m 99.8 1.1E-19 3.9E-24 185.9 8.8 196 407-623 16-257 (321)
210 2j0j_A Focal adhesion kinase 1 99.8 2.8E-19 9.5E-24 200.1 12.0 202 407-631 401-652 (656)
211 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-18 6.5E-23 166.5 16.2 153 56-229 15-168 (220)
212 3zgw_A Maternal embryonic leuc 99.8 1.2E-19 3.9E-24 187.4 8.1 192 407-623 21-260 (347)
213 1u5q_A Serine/threonine protei 99.8 2.1E-19 7.1E-24 186.0 9.9 194 407-623 65-305 (348)
214 1kob_A Twitchin; kinase, intra 99.8 1.6E-19 5.4E-24 189.3 8.6 197 407-623 62-304 (387)
215 2pml_X PFPK7, Ser/Thr protein 99.8 6.6E-19 2.3E-23 182.4 13.2 225 407-638 42-347 (348)
216 1p4o_A Insulin-like growth fac 99.8 1.2E-19 4.3E-24 185.7 7.6 201 407-630 36-299 (322)
217 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.4E-23 192.2 16.2 145 72-226 39-187 (605)
218 4eqm_A Protein kinase; transfe 99.8 1.9E-19 6.6E-24 181.9 8.3 203 407-629 22-274 (294)
219 2yex_A Serine/threonine-protei 99.8 6.1E-19 2.1E-23 176.3 11.8 195 407-623 18-261 (276)
220 1fvr_A Tyrosine-protein kinase 99.8 4.7E-19 1.6E-23 181.9 10.9 202 407-631 36-301 (327)
221 2yfx_A Tyrosine-protein kinase 99.8 4E-19 1.4E-23 182.4 10.3 202 407-631 41-305 (327)
222 3byv_A Rhoptry kinase; malaria 99.8 5.4E-20 1.8E-24 192.9 3.6 198 407-633 84-371 (377)
223 2v62_A Serine/threonine-protei 99.8 1.4E-19 4.7E-24 187.4 6.5 207 407-628 48-326 (345)
224 3dbq_A Dual specificity protei 99.8 2.3E-19 7.8E-24 185.6 8.1 194 407-624 20-274 (343)
225 3a7i_A MST3 kinase, serine/thr 99.8 6.8E-19 2.3E-23 178.6 11.5 193 407-624 33-271 (303)
226 3q60_A ROP5B; pseudokinase, tr 99.8 4.6E-20 1.6E-24 193.0 2.5 209 407-631 73-362 (371)
227 2j7t_A Serine/threonine-protei 99.8 4.9E-19 1.7E-23 179.5 10.1 196 407-623 30-275 (302)
228 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.1E-23 173.0 15.2 164 53-228 47-214 (291)
229 2clq_A Mitogen-activated prote 99.8 3.5E-19 1.2E-23 179.9 8.6 196 407-623 33-278 (295)
230 2y94_A 5'-AMP-activated protei 99.8 1E-18 3.5E-23 187.6 12.7 192 407-623 27-266 (476)
231 2xot_A Amphoterin-induced prot 99.8 1E-18 3.5E-23 181.9 11.9 169 56-227 22-202 (361)
232 3m2w_A MAP kinase-activated pr 99.8 6.2E-19 2.1E-23 178.6 9.8 189 407-623 29-256 (299)
233 3cok_A Serine/threonine-protei 99.8 3.8E-19 1.3E-23 178.1 7.9 193 407-623 22-262 (278)
234 4b8c_D Glucose-repressible alc 99.8 9.9E-20 3.4E-24 206.1 4.0 188 10-228 133-330 (727)
235 3qd2_B Eukaryotic translation 99.8 2.3E-19 7.8E-24 184.4 6.0 170 448-623 137-325 (332)
236 2zmd_A Dual specificity protei 99.8 6.2E-19 2.1E-23 185.4 9.3 194 407-624 67-321 (390)
237 3e7e_A HBUB1, BUB1A, mitotic c 99.8 1.2E-18 4.2E-23 181.7 11.4 210 407-631 76-340 (365)
238 3is5_A Calcium-dependent prote 99.8 1.6E-18 5.5E-23 174.3 11.8 195 407-623 33-278 (285)
239 3gni_B Strad alpha; kinase fol 99.8 1.1E-18 3.9E-23 183.6 11.2 116 408-526 39-178 (389)
240 3o0g_A Cell division protein k 99.8 1.3E-18 4.5E-23 175.5 11.0 213 407-623 13-282 (292)
241 1ob3_A PFPK5, cell division co 99.8 5.1E-19 1.8E-23 178.2 7.9 212 407-623 13-280 (288)
242 3i6u_A CDS1, serine/threonine- 99.8 1.6E-18 5.6E-23 184.0 11.9 197 407-623 146-399 (419)
243 3soa_A Calcium/calmodulin-depe 99.8 7.8E-19 2.7E-23 187.3 9.3 196 407-623 22-267 (444)
244 1h6t_A Internalin B; cell adhe 99.8 1E-17 3.5E-22 168.7 16.8 189 126-384 26-214 (291)
245 1t4h_A Serine/threonine-protei 99.8 7.2E-19 2.5E-23 177.2 8.4 197 407-623 37-282 (290)
246 4agu_A Cyclin-dependent kinase 99.8 7.6E-19 2.6E-23 178.9 8.5 208 407-623 14-284 (311)
247 3kn6_A Ribosomal protein S6 ki 99.8 2.9E-19 9.8E-24 183.3 5.2 197 407-622 22-269 (325)
248 2w5a_A Serine/threonine-protei 99.8 4.7E-19 1.6E-23 177.4 6.7 200 407-626 17-270 (279)
249 1m9s_A Internalin B; cell inva 99.8 4.4E-18 1.5E-22 187.9 15.0 167 52-230 43-213 (605)
250 2yab_A Death-associated protei 99.8 8.8E-19 3E-23 181.9 8.8 196 407-623 23-272 (361)
251 3h4j_B AMPK kdaid, SNF1-like p 99.8 6.1E-19 2.1E-23 181.3 7.4 191 407-623 20-258 (336)
252 1o6l_A RAC-beta serine/threoni 99.8 1.5E-18 5E-23 178.6 10.1 192 407-623 16-260 (337)
253 3c0i_A Peripheral plasma membr 99.8 4.7E-19 1.6E-23 183.7 6.4 196 407-623 35-286 (351)
254 3com_A Serine/threonine-protei 99.8 2.4E-18 8.1E-23 175.5 11.3 194 407-623 40-278 (314)
255 2w4o_A Calcium/calmodulin-depe 99.8 9.1E-19 3.1E-23 181.4 8.3 195 407-623 64-305 (349)
256 3fme_A Dual specificity mitoge 99.8 4.4E-19 1.5E-23 178.7 5.8 196 407-623 18-266 (290)
257 3f3z_A Calcium/calmodulin-depe 99.7 8.4E-19 2.9E-23 175.5 7.5 196 407-623 20-261 (277)
258 1x8b_A WEE1HU, WEE1-like prote 99.7 2.9E-18 9.7E-23 172.4 11.5 191 407-623 22-279 (289)
259 3uc3_A Serine/threonine-protei 99.7 2.6E-18 8.8E-23 178.8 11.5 198 407-624 31-275 (361)
260 2y0a_A Death-associated protei 99.7 7.6E-19 2.6E-23 180.2 7.2 196 407-623 22-271 (326)
261 3g33_A Cell division protein k 99.7 3.4E-18 1.2E-22 173.9 11.7 212 407-623 20-296 (308)
262 2ac3_A MAP kinase-interacting 99.7 1.6E-18 5.4E-23 177.0 9.2 117 407-527 24-165 (316)
263 2xot_A Amphoterin-induced prot 99.7 9.6E-18 3.3E-22 174.5 15.3 157 252-408 41-203 (361)
264 2y7j_A Phosphorylase B kinase 99.7 1.3E-18 4.5E-23 181.3 8.7 196 407-623 105-359 (365)
265 3txo_A PKC-L, NPKC-ETA, protei 99.7 1.2E-18 4.2E-23 180.3 8.3 187 407-618 34-269 (353)
266 2v70_A SLIT-2, SLIT homolog 2 99.7 2.1E-17 7.2E-22 159.2 16.4 133 254-386 36-169 (220)
267 2y4i_B KSR2, HKSR2, kinase sup 99.7 5.7E-19 2E-23 180.5 5.6 201 407-632 44-304 (319)
268 2bdw_A Hypothetical protein K1 99.7 1.6E-18 5.6E-23 180.3 8.7 197 407-624 40-285 (362)
269 1vzo_A Ribosomal protein S6 ki 99.7 9.3E-19 3.2E-23 181.8 6.6 197 407-624 65-322 (355)
270 1dce_A Protein (RAB geranylger 99.7 1E-20 3.6E-25 207.6 -8.6 217 121-377 346-567 (567)
271 3mtl_A Cell division protein k 99.7 3.8E-19 1.3E-23 182.3 3.6 211 407-623 13-281 (324)
272 3nsz_A CK II alpha, casein kin 99.7 2E-18 6.8E-23 177.4 8.7 207 407-623 47-319 (330)
273 1xjd_A Protein kinase C, theta 99.7 1.3E-18 4.4E-23 179.5 7.3 191 407-622 28-268 (345)
274 4ejn_A RAC-alpha serine/threon 99.7 7.7E-19 2.6E-23 188.3 5.7 193 407-623 159-404 (446)
275 2pmi_A Negative RE, cyclin-dep 99.7 2E-18 6.9E-23 176.4 8.4 211 407-623 16-293 (317)
276 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.5E-22 160.0 14.3 132 275-406 33-164 (220)
277 4aw2_A Serine/threonine-protei 99.7 3.6E-18 1.2E-22 181.5 10.6 119 407-528 85-227 (437)
278 3an0_A Dual specificity mitoge 99.7 7.3E-19 2.5E-23 181.5 4.9 196 407-623 62-310 (340)
279 3dls_A PAS domain-containing s 99.7 6.8E-19 2.3E-23 181.2 4.6 195 407-624 35-275 (335)
280 4fr4_A YANK1, serine/threonine 99.7 6.9E-18 2.4E-22 176.3 12.1 118 407-528 26-167 (384)
281 3lm5_A Serine/threonine-protei 99.7 9.7E-19 3.3E-23 179.6 5.5 197 407-623 40-287 (327)
282 2h34_A Serine/threonine-protei 99.7 1.2E-18 4.2E-23 177.3 6.2 202 407-630 45-296 (309)
283 1nxk_A MAP kinase-activated pr 99.7 1.6E-18 5.4E-23 182.9 7.0 195 407-624 73-322 (400)
284 2h6d_A 5'-AMP-activated protei 99.7 2.8E-18 9.6E-23 171.5 8.4 193 407-624 22-262 (276)
285 2rku_A Serine/threonine-protei 99.7 3.2E-18 1.1E-22 172.8 8.7 193 407-624 26-266 (294)
286 2vx3_A Dual specificity tyrosi 99.7 1.3E-17 4.5E-22 175.0 13.6 145 407-554 65-260 (382)
287 3fhr_A MAP kinase-activated pr 99.7 3.1E-18 1.1E-22 176.5 8.5 200 407-623 40-287 (336)
288 2vwi_A Serine/threonine-protei 99.7 1.3E-18 4.3E-23 176.5 5.5 202 407-623 26-287 (303)
289 2i0e_A Protein kinase C-beta I 99.7 3E-18 1E-22 177.3 8.4 187 407-618 31-266 (353)
290 2eue_A Carbon catabolite derep 99.7 2.5E-18 8.6E-23 171.8 7.5 191 407-623 24-262 (275)
291 2qr7_A Ribosomal protein S6 ki 99.7 3.1E-18 1E-22 176.7 8.2 195 407-623 33-277 (342)
292 2vd5_A DMPK protein; serine/th 99.7 5.5E-18 1.9E-22 178.8 10.2 119 407-528 72-214 (412)
293 3llt_A Serine/threonine kinase 99.7 3.1E-18 1.1E-22 178.2 8.3 143 407-554 46-261 (360)
294 4dc2_A Protein kinase C IOTA t 99.7 8.1E-18 2.8E-22 176.4 11.3 116 407-526 63-203 (396)
295 1ua2_A CAK, cell division prot 99.7 5.9E-18 2E-22 175.1 10.1 212 407-623 21-291 (346)
296 2a2a_A Death-associated protei 99.7 2.5E-18 8.7E-23 175.9 7.3 196 407-623 23-272 (321)
297 3pfq_A PKC-B, PKC-beta, protei 99.7 6.8E-18 2.3E-22 189.4 11.3 187 407-618 352-587 (674)
298 2acx_A G protein-coupled recep 99.7 7.3E-18 2.5E-22 183.7 11.1 195 407-623 195-444 (576)
299 3eqc_A Dual specificity mitoge 99.7 3.6E-18 1.2E-22 177.8 8.3 145 407-554 44-232 (360)
300 3dzo_A Rhoptry kinase domain; 99.7 8.6E-19 2.9E-23 185.8 3.4 190 407-624 89-364 (413)
301 3a62_A Ribosomal protein S6 ki 99.7 3.8E-18 1.3E-22 175.1 7.7 192 407-623 28-276 (327)
302 2owb_A Serine/threonine-protei 99.7 4.1E-18 1.4E-22 175.5 8.0 192 407-623 52-291 (335)
303 3cek_A Dual specificity protei 99.7 4.2E-18 1.4E-22 173.6 8.0 194 407-624 39-293 (313)
304 1phk_A Phosphorylase kinase; g 99.7 4.4E-18 1.5E-22 172.1 7.8 196 407-623 28-283 (298)
305 3fdn_A Serine/threonine-protei 99.7 2.8E-18 9.5E-23 171.9 6.2 193 407-624 20-258 (279)
306 4aaa_A Cyclin-dependent kinase 99.7 2E-18 6.9E-23 177.5 5.3 211 407-623 36-306 (331)
307 3uqc_A Probable conserved tran 99.7 5.6E-18 1.9E-22 170.2 8.4 192 407-631 42-266 (286)
308 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.4E-22 155.5 12.6 150 53-228 45-195 (197)
309 2ycf_A Serine/threonine-protei 99.7 7.8E-18 2.7E-22 172.4 9.4 197 407-623 21-274 (322)
310 3ork_A Serine/threonine protei 99.7 5E-19 1.7E-23 180.4 0.4 196 407-623 23-273 (311)
311 1xeu_A Internalin C; cellular 99.7 1.5E-17 5E-22 164.9 10.8 163 54-229 21-187 (263)
312 1z57_A Dual specificity protei 99.7 9.9E-18 3.4E-22 172.6 10.0 210 407-623 25-328 (339)
313 3mi9_A Cell division protein k 99.7 2.9E-17 1E-21 170.3 13.6 211 407-623 28-311 (351)
314 1rdq_E PKA C-alpha, CAMP-depen 99.7 2.8E-18 9.6E-23 177.5 5.8 192 407-623 52-293 (350)
315 1fot_A TPK1 delta, CAMP-depend 99.7 5.9E-18 2E-22 172.7 8.1 192 407-623 17-258 (318)
316 2vgo_A Serine/threonine-protei 99.7 1.4E-17 4.9E-22 167.1 10.8 192 407-623 25-262 (284)
317 3c4z_A Rhodopsin kinase; Ser/T 99.7 1.5E-17 5.2E-22 180.7 11.7 193 407-619 196-439 (543)
318 3kk8_A Calcium/calmodulin depe 99.7 3.7E-18 1.3E-22 171.4 6.3 196 407-623 17-261 (284)
319 2x7f_A TRAF2 and NCK-interacti 99.7 9.6E-18 3.3E-22 172.0 9.5 194 407-623 35-286 (326)
320 3bhy_A Death-associated protei 99.7 3.1E-18 1.1E-22 171.9 5.5 196 407-623 16-265 (283)
321 3kvw_A DYRK2, dual specificity 99.7 1.6E-17 5.3E-22 177.0 11.2 143 407-554 108-301 (429)
322 3pg1_A Mitogen-activated prote 99.7 5.2E-18 1.8E-22 176.7 7.3 212 407-623 33-316 (362)
323 2i6l_A Mitogen-activated prote 99.7 6.1E-18 2.1E-22 172.8 7.6 209 407-623 22-305 (320)
324 3e6j_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 155.3 15.8 152 216-383 21-172 (229)
325 2rio_A Serine/threonine-protei 99.7 1.6E-17 5.3E-22 177.3 10.7 194 407-623 26-295 (434)
326 3mwu_A Calmodulin-domain prote 99.7 8.8E-18 3E-22 182.1 8.9 195 407-623 33-276 (486)
327 3n9x_A Phosphotransferase; mal 99.7 6.7E-18 2.3E-22 180.1 7.7 117 407-528 37-181 (432)
328 3v8s_A RHO-associated protein 99.7 4E-18 1.4E-22 179.8 5.7 195 407-623 80-329 (410)
329 3lij_A Calcium/calmodulin depe 99.7 7.7E-18 2.6E-22 182.9 8.1 196 407-623 48-291 (494)
330 1cm8_A Phosphorylated MAP kina 99.7 1.1E-17 3.7E-22 174.5 8.8 207 407-623 36-307 (367)
331 4ezg_A Putative uncharacterize 99.7 6.6E-17 2.2E-21 152.9 13.4 156 72-264 40-195 (197)
332 2wtk_C Serine/threonine-protei 99.7 2E-17 6.9E-22 167.8 10.6 193 407-624 16-264 (305)
333 2r5t_A Serine/threonine-protei 99.7 9.4E-18 3.2E-22 174.9 8.1 195 407-626 49-292 (373)
334 3nyv_A Calmodulin-domain prote 99.7 5.6E-18 1.9E-22 183.7 6.6 196 407-623 37-281 (484)
335 3oz6_A Mitogen-activated prote 99.7 1E-17 3.5E-22 176.2 8.3 115 407-527 20-160 (388)
336 1wak_A Serine/threonine-protei 99.7 1.7E-17 5.9E-22 174.9 9.9 213 407-623 48-391 (397)
337 3hko_A Calcium/calmodulin-depe 99.7 1.1E-17 3.8E-22 172.9 8.2 197 407-623 37-330 (345)
338 2jam_A Calcium/calmodulin-depe 99.7 4.1E-18 1.4E-22 172.9 4.7 196 407-623 20-261 (304)
339 1zy4_A Serine/threonine-protei 99.7 4.6E-18 1.6E-22 172.2 4.0 117 407-527 17-167 (303)
340 3gbz_A Kinase, CMGC CDK; ssgci 99.7 1.4E-17 4.7E-22 171.1 7.7 211 407-623 45-318 (329)
341 3q5i_A Protein kinase; CDPK, m 99.7 1.1E-17 3.7E-22 182.3 7.1 196 407-623 47-301 (504)
342 3a8x_A Protein kinase C IOTA t 99.7 1.4E-17 4.8E-22 172.0 7.6 116 407-526 20-160 (345)
343 1blx_A Cyclin-dependent kinase 99.7 2.9E-17 9.8E-22 168.4 9.8 211 407-623 22-296 (326)
344 3rp9_A Mitogen-activated prote 99.7 2.5E-17 8.6E-22 177.2 9.4 116 407-527 64-207 (458)
345 2r3i_A Cell division protein k 99.7 2.5E-17 8.6E-22 166.6 8.8 212 407-623 14-283 (299)
346 2eu9_A Dual specificity protei 99.7 3.2E-17 1.1E-21 170.0 9.8 210 407-623 30-333 (355)
347 3ttj_A Mitogen-activated prote 99.7 2.3E-17 8E-22 177.2 8.5 206 407-623 73-355 (464)
348 2wei_A Calmodulin-domain prote 99.7 2.8E-17 9.4E-22 165.3 7.0 196 407-623 33-276 (287)
349 2b9h_A MAP kinase FUS3, mitoge 99.7 3E-17 1E-21 170.2 7.5 115 407-527 22-163 (353)
350 2dyl_A Dual specificity mitoge 99.7 2.9E-17 1E-21 167.6 7.3 197 407-623 36-283 (318)
351 3eb0_A Putative uncharacterize 99.7 4E-17 1.4E-21 171.3 8.2 169 449-623 115-321 (383)
352 1q8y_A SR protein kinase; tran 99.7 5.9E-17 2E-21 169.3 9.2 213 407-623 30-333 (373)
353 1xeu_A Internalin C; cellular 99.7 7.9E-17 2.7E-21 159.6 9.3 170 74-312 17-186 (263)
354 3coi_A Mitogen-activated prote 99.7 4.6E-17 1.6E-21 168.9 7.9 208 407-623 35-305 (353)
355 1w8a_A SLIT protein; signaling 99.7 4.9E-16 1.7E-20 146.2 14.1 97 56-155 12-109 (192)
356 3qa8_A MGC80376 protein; kinas 99.7 5.4E-17 1.8E-21 178.7 8.6 209 407-622 25-296 (676)
357 3aln_A Dual specificity mitoge 99.7 4E-17 1.4E-21 167.4 7.2 199 407-623 33-285 (327)
358 4b8c_D Glucose-repressible alc 99.7 9.4E-18 3.2E-22 189.9 2.5 186 124-340 173-359 (727)
359 1j1b_A Glycogen synthase kinas 99.7 5.1E-17 1.7E-21 172.6 7.7 207 407-623 65-336 (420)
360 3a99_A Proto-oncogene serine/t 99.7 7.1E-18 2.4E-22 172.5 0.8 186 407-623 54-293 (320)
361 1w8a_A SLIT protein; signaling 99.7 2.5E-16 8.7E-21 148.1 11.4 127 36-162 4-140 (192)
362 4e7w_A Glycogen synthase kinas 99.7 3.8E-17 1.3E-21 172.1 5.9 208 407-623 51-321 (394)
363 2ell_A Acidic leucine-rich nuc 99.7 3.3E-16 1.1E-20 144.0 11.5 136 75-229 23-162 (168)
364 3qyz_A Mitogen-activated prote 99.7 1.5E-16 5.2E-21 165.7 10.4 116 407-528 38-180 (364)
365 3rgf_A Cyclin-dependent kinase 99.7 9.5E-17 3.3E-21 169.8 8.8 116 407-528 32-184 (405)
366 3e3p_A Protein kinase, putativ 99.7 1.2E-16 4.2E-21 166.1 9.3 213 407-623 34-314 (360)
367 2fst_X Mitogen-activated prote 99.7 1E-16 3.4E-21 167.0 8.4 209 407-623 40-311 (367)
368 4exu_A Mitogen-activated prote 99.7 5.8E-17 2E-21 169.3 6.5 209 407-623 53-323 (371)
369 3sb4_A Hypothetical leucine ri 99.7 3E-16 1E-20 161.0 11.4 271 75-376 24-327 (329)
370 3p23_A Serine/threonine-protei 99.6 4.7E-17 1.6E-21 173.2 4.8 192 407-623 35-283 (432)
371 2iwi_A Serine/threonine-protei 99.6 1.9E-17 6.5E-22 168.7 1.4 186 407-623 42-283 (312)
372 2xrw_A Mitogen-activated prote 99.6 1.4E-16 4.7E-21 166.5 7.9 203 407-623 36-318 (371)
373 2o6r_A Variable lymphocyte rec 99.6 1.1E-15 3.7E-20 141.9 12.9 132 37-183 4-141 (177)
374 2pzi_A Probable serine/threoni 99.6 2.5E-16 8.5E-21 177.7 7.8 199 407-630 91-328 (681)
375 2je0_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 140.5 7.3 128 76-222 17-148 (149)
376 2wfh_A SLIT homolog 2 protein 99.6 6.2E-15 2.1E-19 138.6 14.1 102 56-161 14-115 (193)
377 2wfh_A SLIT homolog 2 protein 99.6 2.8E-15 9.6E-20 141.0 11.7 126 35-161 5-139 (193)
378 2o6r_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 135.4 13.8 133 78-231 9-141 (177)
379 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 135.8 10.4 132 274-407 24-160 (168)
380 2vuw_A Serine/threonine-protei 99.6 3.2E-15 1.1E-19 153.9 8.2 76 449-528 139-234 (336)
381 3sb4_A Hypothetical leucine ri 99.6 6.7E-15 2.3E-19 151.0 10.4 82 269-352 245-327 (329)
382 2je0_A Acidic leucine-rich nuc 99.6 6.1E-15 2.1E-19 132.5 8.8 126 275-402 18-148 (149)
383 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.1E-19 133.4 8.0 131 72-226 15-152 (176)
384 4fdw_A Leucine rich hypothetic 99.5 1.5E-12 5.1E-17 136.6 22.1 252 75-369 112-368 (401)
385 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 126.0 12.2 104 56-162 13-116 (170)
386 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.4E-21 149.5 -7.5 150 53-227 19-185 (198)
387 4fdw_A Leucine rich hypothetic 99.5 2.5E-12 8.6E-17 134.8 22.5 253 63-358 123-382 (401)
388 4azs_A Methyltransferase WBDD; 99.5 1.5E-14 5.3E-19 158.7 5.6 104 419-529 258-392 (569)
389 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 125.4 12.1 105 55-162 15-119 (174)
390 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.7E-18 126.9 8.9 133 270-407 15-153 (176)
391 3g39_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 117.9 12.5 107 276-385 11-117 (170)
392 1ds9_A Outer arm dynein; leuci 99.4 4.9E-15 1.7E-19 140.1 -6.1 133 268-407 42-185 (198)
393 2ifg_A High affinity nerve gro 99.4 1.6E-12 5.4E-17 134.2 12.0 109 39-162 7-117 (347)
394 1zar_A RIO2 kinase; serine kin 99.4 5.9E-13 2E-17 132.9 7.1 108 407-526 101-242 (282)
395 2r9u_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 116.3 12.5 105 277-384 15-119 (174)
396 4fs7_A Uncharacterized protein 99.2 2.2E-10 7.5E-15 120.3 19.7 307 69-402 64-374 (394)
397 4fs7_A Uncharacterized protein 99.2 4.9E-10 1.7E-14 117.6 22.4 317 52-398 71-392 (394)
398 1zth_A RIO1 serine protein kin 99.2 8E-12 2.7E-16 123.1 5.6 112 407-526 58-219 (258)
399 3un9_A NLR family member X1; l 99.2 9.1E-13 3.1E-17 136.8 -1.7 86 76-161 72-168 (372)
400 3en9_A Glycoprotease, O-sialog 99.2 1.1E-11 3.6E-16 135.3 6.3 107 407-528 347-481 (540)
401 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 121.4 11.0 80 80-161 12-93 (347)
402 3un9_A NLR family member X1; l 99.1 4.3E-12 1.5E-16 131.7 -0.7 162 250-411 72-256 (372)
403 4gt6_A Cell surface protein; l 99.1 1.2E-08 4.2E-13 106.9 23.3 320 70-404 57-388 (394)
404 4gt6_A Cell surface protein; l 98.9 6.5E-08 2.2E-12 101.3 22.1 291 92-405 55-368 (394)
405 2ra8_A Uncharacterized protein 98.8 5.1E-10 1.7E-14 115.2 1.9 205 52-285 107-341 (362)
406 3rw6_A Nuclear RNA export fact 98.8 2.7E-11 9.1E-16 118.4 -7.6 124 38-163 76-211 (267)
407 4gyi_A RIO2 kinase; protein ki 98.7 1.1E-08 3.7E-13 105.0 6.8 109 407-525 106-264 (397)
408 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.3E-13 102.3 6.6 61 251-311 253-320 (362)
409 4h09_A Hypothetical leucine ri 98.6 5E-06 1.7E-10 86.4 22.7 128 271-402 214-341 (379)
410 4h09_A Hypothetical leucine ri 98.5 1.3E-05 4.5E-10 83.1 22.4 110 268-380 234-343 (379)
411 1io0_A Tropomodulin; LRR prote 98.4 4.6E-08 1.6E-12 90.7 0.1 92 71-162 31-137 (185)
412 3rw6_A Nuclear RNA export fact 98.3 2.9E-07 1E-11 89.7 5.1 62 98-161 168-233 (267)
413 1io0_A Tropomodulin; LRR prote 98.1 1.1E-06 3.7E-11 81.4 4.0 115 268-382 30-163 (185)
414 3tm0_A Aminoglycoside 3'-phosp 97.7 4.8E-05 1.6E-09 74.4 6.9 109 410-525 28-213 (263)
415 1nd4_A Aminoglycoside 3'-phosp 97.6 9.3E-05 3.2E-09 72.0 6.8 104 410-525 34-214 (264)
416 3e4g_A ATP synthase subunit S, 97.4 5E-05 1.7E-09 68.6 2.6 82 77-158 62-149 (176)
417 3e4g_A ATP synthase subunit S, 97.3 0.00011 3.7E-09 66.4 2.9 85 51-135 60-150 (176)
418 3dxp_A Putative acyl-COA dehyd 97.1 0.001 3.4E-08 68.2 8.9 113 409-525 51-248 (359)
419 3rfe_A Platelet glycoprotein I 96.6 0.0031 1E-07 54.0 6.2 53 56-110 12-65 (130)
420 3rfe_A Platelet glycoprotein I 96.5 0.0038 1.3E-07 53.5 6.2 36 125-160 32-67 (130)
421 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0027 9.3E-08 58.3 3.2 13 212-224 155-167 (197)
422 1pgv_A TMD-1, tropomodulin TMD 95.9 0.009 3.1E-07 54.8 5.7 65 271-335 38-111 (197)
423 3sg8_A APH(2'')-ID; antibiotic 95.7 0.0051 1.7E-07 61.3 3.6 32 494-525 190-223 (304)
424 3r70_A Aminoglycoside phosphot 94.7 0.023 7.7E-07 57.0 4.7 31 495-525 207-237 (320)
425 3d1u_A Putative fructosamine-3 94.2 0.13 4.5E-06 50.5 8.8 114 409-524 28-215 (288)
426 3tdw_A Gentamicin resistance p 92.8 0.076 2.6E-06 52.7 4.3 33 493-525 188-224 (306)
427 3ats_A Putative uncharacterize 91.5 0.16 5.6E-06 51.4 5.1 32 494-525 221-252 (357)
428 2q83_A YTAA protein; 2635576, 87.8 0.29 1E-05 48.9 3.5 31 494-524 221-251 (346)
429 3f7w_A Putative fructosamine-3 84.0 2.3 7.9E-05 41.2 7.7 39 409-447 28-66 (288)
430 2pyw_A Uncharacterized protein 76.2 1.7 5.8E-05 44.9 3.9 31 494-525 231-261 (420)
431 2ppq_A HSK, HK, homoserine kin 73.8 1.3 4.5E-05 43.7 2.2 31 494-524 186-216 (322)
432 3ovc_A Hygromycin-B 4-O-kinase 73.7 1.3 4.6E-05 44.7 2.3 31 495-525 213-243 (362)
433 4gkh_A Aminoglycoside 3'-phosp 72.6 2.3 8E-05 40.6 3.6 32 494-525 192-223 (272)
434 3csv_A Aminoglycoside phosphot 72.0 3.7 0.00013 40.6 5.1 32 494-525 182-217 (333)
435 1zyl_A Hypothetical protein YI 65.3 4 0.00014 40.2 3.7 29 494-524 194-222 (328)
436 3g15_A CK, chetk-alpha, cholin 55.5 4.4 0.00015 41.5 1.9 29 497-525 246-280 (401)
437 3c5i_A Choline kinase; choline 53.6 8 0.00027 38.9 3.5 30 494-524 211-240 (369)
438 3i1a_A Spectinomycin phosphotr 53.5 4.6 0.00016 40.2 1.7 32 494-525 205-236 (339)
439 2olc_A MTR kinase, methylthior 50.6 6.5 0.00022 40.0 2.2 31 494-525 226-256 (397)
440 2qg7_A Ethanolamine kinase PV0 50.4 14 0.00047 38.5 4.7 17 494-510 289-305 (458)
441 3dxq_A Choline/ethanolamine ki 47.2 8.1 0.00028 37.5 2.2 31 494-525 172-202 (301)
442 4ano_A ESSB; membrane protein, 42.3 28 0.00097 31.9 4.9 54 469-527 81-135 (219)
443 3jr1_A Putative fructosamine-3 41.3 19 0.00064 35.3 3.8 28 493-521 205-232 (312)
444 1nw1_A Choline kinase (49.2 KD 40.0 9.9 0.00034 39.2 1.6 19 494-512 248-266 (429)
445 4ann_A ESSB; membrane protein, 39.4 35 0.0012 31.2 5.0 56 469-529 77-132 (215)
446 3feg_A Choline/ethanolamine ki 36.6 14 0.00048 37.4 2.1 32 494-525 219-254 (379)
447 3f2s_A CK, chetk-alpha, cholin 32.3 18 0.00061 36.9 2.0 32 494-525 243-280 (401)
448 2lz0_A Uncharacterized protein 29.0 99 0.0034 24.2 5.5 40 315-355 13-52 (100)
449 2lz0_A Uncharacterized protein 26.3 1.6E+02 0.0054 22.9 6.3 47 63-110 7-53 (100)
450 3pk1_B Apoptosis regulator BAX 24.1 94 0.0032 18.8 3.2 22 615-636 6-27 (34)
451 3mes_A Choline kinase; malaria 24.0 29 0.00099 35.6 1.9 31 494-525 261-291 (424)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.2e-50 Score=457.86 Aligned_cols=393 Identities=28% Similarity=0.383 Sum_probs=304.9
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcCccceecCCCCCcEEEEEeCCCCCccc---CC-------------
Q 041082 6 DNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTST---IP------------- 69 (639)
Q Consensus 6 ~~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~p------------- 69 (639)
....+++||++||+++. ||. .+++ |..+++||.|.||+|+ .++|+.|+|+++.+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp CHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 35678999999999995 887 8888 9988899999999998 47999999999998886 33
Q ss_pred ----------cCCCCCCCCCEEeccCCcCCccCCc--cccCCcccceeeccCCcCCCCCCccc-cCCCCCcEEecccccC
Q 041082 70 ----------SELGNLSSLQTLDLSFNWFSGSIPS--SIFNMSSLLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFL 136 (639)
Q Consensus 70 ----------~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l 136 (639)
..|+.+++|++|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+|++|++
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 5788889999999999999988888 89999999999999999998888876 8899999999999999
Q ss_pred ccccCcc---ccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 137 TGTIHSS---IFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 137 ~~~~p~~---~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
++..|.. +.++++|++|++++|.+++. .+++|++|+|++|++++.+|. +.++++|++|++++|.+++.+|..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH
Confidence 9888876 78899999999999988763 478999999999999998887 899999999999999999999999
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh---------------hhccCccEEEeecCccccccchhhcCCC
Q 041082 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE---------------QSSQSLEVFSMFNCNISGGILEEISNLT 274 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~---------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 274 (639)
|+.+++|++|++++|.+++..+.. .+.+++.+. ....+|+.|++++|.+.+.+|..++.++
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 999999999999999988654432 122222221 1125677777777777777777777777
Q ss_pred CCCEEECCCCCCCcccccc-ccCCcCCcEEEccCCcCCCCCchhhcCCC-C--------------------------CcE
Q 041082 275 NLTAIYLAGNKLNGSIPIT-LCKLQKLQLLSFVDNKLEGPIPYEFCRLA-S--------------------------LYE 326 (639)
Q Consensus 275 ~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~--------------------------L~~ 326 (639)
+|+.|++++|.++|.+|.. +..+++|++|++++|++.+.+|..+..++ + |+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 7777777777777666654 66777777777777777666666555544 4 455
Q ss_pred EECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 327 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 55555555555555666666666666666666666666666666666666666666666666666666666667766666
Q ss_pred CC
Q 041082 407 SG 408 (639)
Q Consensus 407 ~g 408 (639)
++
T Consensus 479 ~~ 480 (768)
T 3rgz_A 479 TG 480 (768)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-47 Score=425.20 Aligned_cols=407 Identities=19% Similarity=0.254 Sum_probs=324.6
Q ss_pred hHHHHHHHHHhcCCCCCCcc--------cccCCCCCCCCcCc---cceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCC
Q 041082 9 HLSFQVFVLKGHVTDDPTNF--------LAKNWNTSSTVCHW---TGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSS 77 (639)
Q Consensus 9 ~~~~~ll~~k~~~~~~~~~~--------l~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~ 77 (639)
.+..||.+++.++. ++... ..+ |..++++|.| .||+|+.. ++|+.|+|++++++|.+|++|++|++
T Consensus 30 ~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~-W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 30 KDYLALKEIWDALN-GKNWSQQGFGTQPGAN-WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHTT-GGGCCCCC------CC-CCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHcC-CCCcccCCcCCccCCC-CCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCcc
Confidence 57889999999874 33211 224 9988999999 99999865 79999999999999999999999999
Q ss_pred CCEEeccCCc----------------------------------------------------------------------
Q 041082 78 LQTLDLSFNW---------------------------------------------------------------------- 87 (639)
Q Consensus 78 L~~L~Ls~N~---------------------------------------------------------------------- 87 (639)
|++|+|++|.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 9999999884
Q ss_pred --------CCccCCccccCCcccceeeccCCcCCCC-----------------CCcccc--CCCCCcEEecccccCcccc
Q 041082 88 --------FSGSIPSSIFNMSSLLSIYFNNNTLFGE-----------------IPEELG--NLAELETLWLQNNFLTGTI 140 (639)
Q Consensus 88 --------l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~l~~~~ 140 (639)
++| +|.+|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 445 899999999999999999999996 999999 9999999999999999999
Q ss_pred CccccCCCCCCEEecCCCC-CCC--CC-----C------CCccEEEccCCccCccCCc--cccCCCCCcEEEcccCCCcc
Q 041082 141 HSSIFNLSSLSDLDLSHNN-LTD--VQ-----I------PNLENLLLWGNNFSGAIPH--FIFNASKLSILELQKNSFFD 204 (639)
Q Consensus 141 p~~~~~l~~L~~L~Ls~N~-l~~--~~-----l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~ 204 (639)
|..++++++|++|+|++|. +++ ++ + ++|+.|+|++|+++ .+|. .+.++++|+.|++++|.+.|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999999999999999998 886 22 3 89999999999999 8888 89999999999999999998
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC-Ccchhhh---------------ccCccEEEeecCccccccch
Q 041082 205 LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN-CKYLEQS---------------SQSLEVFSMFNCNISGGILE 268 (639)
Q Consensus 205 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-l~~l~~~---------------~~~l~~l~l~~n~l~~~~~~ 268 (639)
.+| .|+.+++|++|++++|.++..+..+.. +.+ ++.+... ..+|+.|++++|.+.+.+|.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~---l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCG---FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEECCTTSEE---ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred chh-hhCCCCCCCEEECCCCccccccHhhhh---hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 888 889999999999999988855543322 222 2222111 12577888888888887777
Q ss_pred hhc-------CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCC-------CCcEEECCCCcC
Q 041082 269 EIS-------NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA-------SLYELDLSGNKL 334 (639)
Q Consensus 269 ~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-------~L~~L~Ls~N~l 334 (639)
.+. .+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+.... +|+.|++++|.+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 777 677888888888888744334455678888888888888843333333332 788888888888
Q ss_pred cccCCcccc--CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEc------ccCCCCCCCccccccccccccccccCCCC
Q 041082 335 SGSIPTCFG--NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL------SSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 335 ~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
+ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|+|
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8 5677776 88888888888888887 6777888888888888 45777888888888888888888888888
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
+.+... ....++.++++++.
T Consensus 579 ~~ip~~--------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 579 RKVNEK--------ITPNISVLDIKDNP 598 (636)
T ss_dssp CBCCSC--------CCTTCCEEECCSCT
T ss_pred CccCHh--------HhCcCCEEECcCCC
Confidence 543322 11345566665553
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-45 Score=419.78 Aligned_cols=401 Identities=20% Similarity=0.289 Sum_probs=331.7
Q ss_pred hhHHHHHHHHHhcCCCCCCcccccCCCCCC-----CC--cCc------------cceecCCCCCcEEEEEeCCCCCcccC
Q 041082 8 NHLSFQVFVLKGHVTDDPTNFLAKNWNTSS-----TV--CHW------------TGVSCDVRSYRVTTLNISGLSLTSTI 68 (639)
Q Consensus 8 ~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~ 68 (639)
..+.+||++||.++ .+| + |+.+. +| |.| .||+|+. .++|+.|+|++++++|.+
T Consensus 268 ~~d~~ALl~~k~~l-~~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 268 IKDYKALKAIWEAL-DGK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHT-TGG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred hHHHHHHHHHHHHc-CCC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence 46899999999998 466 4 86543 56 999 9999986 479999999999999999
Q ss_pred CcCCCCCCCCCEEec-cCCcCCcc--------------------------------------------------------
Q 041082 69 PSELGNLSSLQTLDL-SFNWFSGS-------------------------------------------------------- 91 (639)
Q Consensus 69 p~~l~~l~~L~~L~L-s~N~l~~~-------------------------------------------------------- 91 (639)
|++|++|++|++|+| ++|.++|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765444
Q ss_pred --------------------CCccccCCcccceeeccCCcCCC-----------------CCCcccc--CCCCCcEEecc
Q 041082 92 --------------------IPSSIFNMSSLLSIYFNNNTLFG-----------------EIPEELG--NLAELETLWLQ 132 (639)
Q Consensus 92 --------------------~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~L~ 132 (639)
+|..|+++++|+.|+|++|.+++ .+|..++ ++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 88999999999999999999999 4899988 99999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCC-CCC--C------------CCCCccEEEccCCccCccCCc--cccCCCCCcEE
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNN-LTD--V------------QIPNLENLLLWGNNFSGAIPH--FIFNASKLSIL 195 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~--~------------~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L 195 (639)
+|.+.+.+|..|.++++|+.|+|++|. +++ + .+++|+.|+|++|+++ .+|. .+.++++|+.|
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 999999999999999999999999998 876 2 2459999999999999 8888 89999999999
Q ss_pred EcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC-Ccchhhh---------------ccCccEEEeec
Q 041082 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN-CKYLEQS---------------SQSLEVFSMFN 259 (639)
Q Consensus 196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-l~~l~~~---------------~~~l~~l~l~~ 259 (639)
+|++|.+. .+| .|+.+++|+.|+|++|.++..+..+.. +.+ +..|... ..+|+.|++++
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~---l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA---FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCE---ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhh---ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 99999998 667 899999999999999999865544322 222 2222211 12388899999
Q ss_pred Cccccccchh---hc--CCCCCCEEECCCCCCCcccccc-ccCCcCCcEEEccCCcCCCCCchh-hcC-------CCCCc
Q 041082 260 CNISGGILEE---IS--NLTNLTAIYLAGNKLNGSIPIT-LCKLQKLQLLSFVDNKLEGPIPYE-FCR-------LASLY 325 (639)
Q Consensus 260 n~l~~~~~~~---~~--~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~-~~~-------l~~L~ 325 (639)
|.+.+.+|.. +. .+++|+.|++++|.++ .+|.. +..+++|+.|++++|++. .+|.. +.. +++|+
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 9998866532 22 3458999999999998 45554 458899999999999998 44543 332 23899
Q ss_pred EEECCCCcCcccCCcccc--CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEccc------CCCCCCCccccccccccc
Q 041082 326 ELDLSGNKLSGSIPTCFG--NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSS------NFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 326 ~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~p~~~~~l~~L~ 397 (639)
.|+|++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 9999999999 6788887 89999999999999998 688888999999999976 788899999999999999
Q ss_pred cccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 398 GIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 398 ~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
.|++++|+|+.+... ....++.++++++.
T Consensus 810 ~L~Ls~N~L~~Ip~~--------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 810 QLQIGSNDIRKVDEK--------LTPQLYILDIADNP 838 (876)
T ss_dssp EEECCSSCCCBCCSC--------CCSSSCEEECCSCT
T ss_pred EEECCCCCCCccCHh--------hcCCCCEEECCCCC
Confidence 999999999543322 11256677776654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-44 Score=413.55 Aligned_cols=344 Identities=34% Similarity=0.483 Sum_probs=229.4
Q ss_pred cEEEEEeCCCCCcccCCcCCCCC-CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCcc-ccCCCCCcEEe
Q 041082 53 RVTTLNISGLSLTSTIPSELGNL-SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLW 130 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~ 130 (639)
+++.|++++|.+++.+|..+..+ ++|++|+|++|.+++.+|..|.++++|+.|++++|.+.+.+|.. |..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 45666666666666666666554 67777777777777777777777777777777777776666655 67777777777
Q ss_pred cccccCccccCccccCCC-CCCEEecCCCCCCCC--------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCC
Q 041082 131 LQNNFLTGTIHSSIFNLS-SLSDLDLSHNNLTDV--------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201 (639)
Q Consensus 131 L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~--------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 201 (639)
|++|++++.+|..+.+++ +|++|++++|.+++. .+++|+.|++++|++++.+|..+.++++|+.|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 777777767776666665 677777777766531 14567777777777777777777777888888888888
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEEC
Q 041082 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281 (639)
Q Consensus 202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L 281 (639)
+++.+|..|+.+++|+.|++++|.+++..|.. +. ...+|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----~~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-----LM-------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-----GG-------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHH-----Hc-------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 77777777777888888888888777654321 11 1235566666666666666666666666666666
Q ss_pred CCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccc-------------------
Q 041082 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCF------------------- 342 (639)
Q Consensus 282 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------- 342 (639)
++|++++.+|.+++.+++|++|++++|++++.+|..++.+++|+.|++++|.++|.+|..+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 6666666666666666666666666666666666666666666666666666655544322
Q ss_pred ---------------------------------------------------cCCCCCCEEeCCCCcCcccchhhhhcCCC
Q 041082 343 ---------------------------------------------------GNQTSLRILSLDSNKLISIIPSTLWNLKD 371 (639)
Q Consensus 343 ---------------------------------------------------~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 371 (639)
..+++|++|++++|++++.+|..+..++.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 22345666666666666666666666666
Q ss_pred CcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 372 ILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 372 L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
|+.|++++|+++|.+|..++.++.|+.||+++|+++|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 6666666666666666666666666666666666654
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-41 Score=345.04 Aligned_cols=291 Identities=31% Similarity=0.479 Sum_probs=209.7
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcC--ccceecCCCC--CcEEEEEeCCCCCcc--cCCcCCCCCCCCCE
Q 041082 7 NNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCH--WTGVSCDVRS--YRVTTLNISGLSLTS--TIPSELGNLSSLQT 80 (639)
Q Consensus 7 ~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~p~~l~~l~~L~~ 80 (639)
...+++||++||+++ .||. .+++ |..+++||. |.||+|+... .+|+.|+|+++.+++ .+|..|+++++|++
T Consensus 4 ~~~~~~aL~~~k~~~-~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 4 NPQDKQALLQIKKDL-GNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CHHHHHHHHHHHHHT-TCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CHHHHHHHHHHHHhc-CCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 356889999999998 4776 6777 988889998 9999998654 689999999999999 89999999999999
Q ss_pred EeccC-CcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 81 LDLSF-NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 81 L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
|+|++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999999999999999999999999999998899888887766666666555
Q ss_pred CCCCCCCCccEEEccCCccCccCCccccCCC-CCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNAS-KLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 160 l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
++ +.+|..++.++ +|+.|++++|.+.+.+|..|+.++ |++|++++|.+++
T Consensus 161 l~------------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~---------- 211 (313)
T 1ogq_A 161 IS------------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG---------- 211 (313)
T ss_dssp CE------------------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE----------
T ss_pred cc------------------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC----------
Confidence 44 45566666665 666666666666666665555554 5555555444332
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 318 (639)
..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|
T Consensus 212 --------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 212 --------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 2333444555555555555555544443 4445555555555555555555555
Q ss_pred cCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041082 319 CRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 357 (639)
..+++|+.|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555555555555543 445555555555554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-39 Score=365.57 Aligned_cols=361 Identities=18% Similarity=0.190 Sum_probs=237.6
Q ss_pred CCCCCCCcC--ccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 33 WNTSSTVCH--WTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 33 w~~~~~~c~--w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
|....+.|. +..+.|... +..++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 434444443 445777653 246899999999999988999999999999999999999999999999999
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWG 175 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~ 175 (639)
|++|++++|.+.+..|..|+++++|++|+|++|++++..|..+.++++|++|+|++|.++++. +++|+.|++++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 999999999999999999999999999999999999887888999999999999999998752 57899999999
Q ss_pred CccCccCCccccCCCCCc--EEEcccCCCcccCccccCCCCC--------------------------------------
Q 041082 176 NNFSGAIPHFIFNASKLS--ILELQKNSFFDLIPNTFGNLIN-------------------------------------- 215 (639)
Q Consensus 176 N~l~~~~p~~~~~l~~L~--~L~L~~N~l~~~~p~~~~~l~~-------------------------------------- 215 (639)
|++++..|..+..+++|+ .|++++|.+.+..|..|.. ..
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 999988888888888888 8888888888877765543 23
Q ss_pred --------------CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEEC
Q 041082 216 --------------LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281 (639)
Q Consensus 216 --------------L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L 281 (639)
|+.|++++|.+++.++.. +. ...+|+.|++++|.++ .+|..+..+++|++|++
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~--~~----------~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNT--FH----------CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT--TT----------TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHH--hc----------cccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence 334444444443332210 00 1124445555555544 34444445555555555
Q ss_pred CCCCCCccccccccCCcCCcEEEccCCcCCCCCch-hhcCCCCCcEEECCCCcCcccC--CccccCCCCCCEEeCCCCcC
Q 041082 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY-EFCRLASLYELDLSGNKLSGSI--PTCFGNQTSLRILSLDSNKL 358 (639)
Q Consensus 282 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l 358 (639)
++|.+++..|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+++.. |..+..+++|++|++++|.+
T Consensus 309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 55555544444445555555555555544433332 2444455555555555444433 44444445555555555554
Q ss_pred cccchhhhhcCCCCcEEEcccCCCCCCCccc-cccccccccccccCCCCC
Q 041082 359 ISIIPSTLWNLKDILYLNLSSNFFISPLPLE-IGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 359 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~l~ls~N~l~ 407 (639)
.+..|..|..+++|++|++++|.+.+..|.. +..+++|+.|++++|.++
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 4444444444444555555554444433322 444444444444444443
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.8e-40 Score=354.44 Aligned_cols=363 Identities=20% Similarity=0.211 Sum_probs=303.6
Q ss_pred CcCccc--eecCCCC--------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccC-CccccCCcccceeec
Q 041082 39 VCHWTG--VSCDVRS--------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYF 107 (639)
Q Consensus 39 ~c~w~g--v~c~~~~--------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L 107 (639)
.|.|.+ |.|+... .+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 455544 7776542 46899999999999988999999999999999999998665 567999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEecccccCccccCcc--ccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCcc
Q 041082 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSS--IFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNF 178 (639)
Q Consensus 108 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l 178 (639)
++|.+.+..|..|+++++|++|+|++|++++.+|.. +..+++|++|+|++|.++++ .+++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999999999999999999999999999866655 99999999999999999875 368999999999999
Q ss_pred CccCCccccCC--CCCcEEEcccCCCcccCcccc--------CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhh
Q 041082 179 SGAIPHFIFNA--SKLSILELQKNSFFDLIPNTF--------GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248 (639)
Q Consensus 179 ~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~ 248 (639)
++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+... ... ..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~~-------~~ 237 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDA-------IA 237 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH--HHH-------TT
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh--hcc-------cc
Confidence 99999888765 789999999999988765543 367899999999999886432211 000 01
Q ss_pred ccCccEEEeecCcccccc----------chhhc--CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch
Q 041082 249 SQSLEVFSMFNCNISGGI----------LEEIS--NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY 316 (639)
Q Consensus 249 ~~~l~~l~l~~n~l~~~~----------~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 316 (639)
..+++.+++++|...+.. +..+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 246777888777554322 11222 236899999999999988888899999999999999999988888
Q ss_pred hhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccc
Q 041082 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL 396 (639)
Q Consensus 317 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 396 (639)
.|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+..|..|..+++|++|++++|++++..+..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999988888889999999999999999999889899999999999999999988777777889999
Q ss_pred ccccccCCCCCCcC
Q 041082 397 VGIDLSMNNFSGFG 410 (639)
Q Consensus 397 ~~l~ls~N~l~g~g 410 (639)
+.|++++|+|++..
T Consensus 398 ~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 398 QKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCCcccCC
Confidence 99999999998743
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.1e-40 Score=366.42 Aligned_cols=356 Identities=20% Similarity=0.181 Sum_probs=279.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46889999999999888888999999999999999999888888999999999999999999888999999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccCCCCCc----EEEcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFNASKLS----ILELQKN 200 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~N 200 (639)
++|.+++..+..+.++++|++|+|++|.++++ .+++|++|++++|++++..|..+..+++|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 99999888778889999999999999988753 267888888888888876665544333222 3444444
Q ss_pred CCcccCcc------------------------------------------------------------------------
Q 041082 201 SFFDLIPN------------------------------------------------------------------------ 208 (639)
Q Consensus 201 ~l~~~~p~------------------------------------------------------------------------ 208 (639)
.+.+..+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 44333222
Q ss_pred ------------------------------ccCCCCCCCEEEccCCCCCCCCCcchhhc-------------------cc
Q 041082 209 ------------------------------TFGNLINLKRLNLYDNYLTSSTPELSFLY-------------------SL 239 (639)
Q Consensus 209 ------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------~l 239 (639)
.+..+++|++|++++|.+...+ .+ ... .+
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccC
Confidence 2333344444444444442222 11 000 01
Q ss_pred cCCcchh----------------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc-ccccCCcCCcE
Q 041082 240 SNCKYLE----------------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP-ITLCKLQKLQL 302 (639)
Q Consensus 240 ~~l~~l~----------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 302 (639)
.+++.+. ....+|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..+++|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 1111111 012456666666666554 44667788899999999999988877 68889999999
Q ss_pred EEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc-cCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCC
Q 041082 303 LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 303 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
|++++|++.+..|..|..+++|+.|++++|.+++ .+|..|..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999999999999999999999999999999998 479999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCCcC
Q 041082 382 FISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 382 l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
+++..|..+..+++|+.||+++|+|+.+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 99999999999999999999999998643
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-39 Score=357.47 Aligned_cols=388 Identities=19% Similarity=0.180 Sum_probs=275.1
Q ss_pred CCcCccceecCCCC-----------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 38 TVCHWTGVSCDVRS-----------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 38 ~~c~w~gv~c~~~~-----------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..|.|.|+ |+.+. .+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 45899988 86531 3689999999999998899999999999999999999998889999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCcc-ccCccccCCCCCCEEecCCCC-CCCC------CCCCccEEEccCCcc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTG-TIHSSIFNLSSLSDLDLSHNN-LTDV------QIPNLENLLLWGNNF 178 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~-l~~~------~l~~L~~L~L~~N~l 178 (639)
+++|.+.+..|..|+++++|++|+|++|.+++ ..|..+.++++|++|++++|. ++.+ .+++|++|++++|++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999999888889999999999999999987 357789999999999999998 4432 378999999999999
Q ss_pred CccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCc-chh----------------------
Q 041082 179 SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE-LSF---------------------- 235 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~---------------------- 235 (639)
++.+|..+..+++|+.|+++.|.+....+..++.+++|++|++++|.+++.... ...
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 999999999888888888888887554333345678888888888887764100 000
Q ss_pred ------------------------------------hccccCCcch-------------------hhhccCccEEEeecC
Q 041082 236 ------------------------------------LYSLSNCKYL-------------------EQSSQSLEVFSMFNC 260 (639)
Q Consensus 236 ------------------------------------~~~l~~l~~l-------------------~~~~~~l~~l~l~~n 260 (639)
+..+.++..+ .....+++.+++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 0001111110 011234556666666
Q ss_pred ccccccchhh-cCCCCCCEEECCCCCCCccccc---cccCCcCCcEEEccCCcCCCCCc--hhhcCCCCCcEEECCCCcC
Q 041082 261 NISGGILEEI-SNLTNLTAIYLAGNKLNGSIPI---TLCKLQKLQLLSFVDNKLEGPIP--YEFCRLASLYELDLSGNKL 334 (639)
Q Consensus 261 ~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l 334 (639)
.+. .+|..+ ..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 554 344433 4566667777777766655432 24556666666666666654432 3456666666666666666
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccchh-----------------hhhcCCCCcEEEcccCCCCCCCccccccccccc
Q 041082 335 SGSIPTCFGNQTSLRILSLDSNKLISIIPS-----------------TLWNLKDILYLNLSSNFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 335 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-----------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 397 (639)
+ .+|..+..+++|++|++++|.++..... .+..+++|++|++++|+++ .+|. ...++.|+
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~ 476 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL 476 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred c-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence 6 3555555555666666655555432111 0136788999999999987 5665 46788999
Q ss_pred cccccCCCCCCcCcceEEEecCCceeeeEEechhhhhh
Q 041082 398 GIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYERA 435 (639)
Q Consensus 398 ~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~~ 435 (639)
.||+++|++++...... +....++.++++.+..
T Consensus 477 ~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 477 VMKISRNQLKSVPDGIF-----DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCCCCCTTGG-----GGCTTCCEEECCSSCB
T ss_pred EEecCCCccCCcCHHHH-----hcCcccCEEEecCCCc
Confidence 99999999987543211 1233556666666543
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-39 Score=344.98 Aligned_cols=366 Identities=19% Similarity=0.160 Sum_probs=308.6
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC-CccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI-PEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N 134 (639)
.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4778888887 4565 43 78999999999999988999999999999999999998666 567999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCC-------C-CCCCccEEEccCCccCccCCcc-ccCCCCCcEEEcccCCCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTD-------V-QIPNLENLLLWGNNFSGAIPHF-IFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------~-~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~ 205 (639)
++++..|..|.++++|++|+|++|.+++ + .+++|++|+|++|++++..|.. +.++++|+.|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9999999999999999999999999986 2 3789999999999999988876 78999999999999999999
Q ss_pred CccccCCC--CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCC---CCCCEEE
Q 041082 206 IPNTFGNL--INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL---TNLTAIY 280 (639)
Q Consensus 206 ~p~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l---~~L~~L~ 280 (639)
.|..+..+ .+|+.|++++|.+...++........... ....+|+.|++++|.+.+..+..+... ++|+.|+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP----FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT----TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccc----cccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 99888776 78999999999998865432111111111 012478999999999999888877554 8899999
Q ss_pred CCCCCCCccc----------cccccC--CcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCC
Q 041082 281 LAGNKLNGSI----------PITLCK--LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348 (639)
Q Consensus 281 Ls~N~l~~~~----------p~~~~~--l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 348 (639)
+++|.+.+.. +..+.. .++|+.|++++|++.+.+|..|+.+++|+.|++++|.+++..|..|..+++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 9998655431 222222 3689999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEe
Q 041082 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVF 428 (639)
Q Consensus 349 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l 428 (639)
++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|+.|++++|+|+++..... .....++.+
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L 400 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF-----DRLTSLQKI 400 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEE
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh-----ccCCcccEE
Confidence 999999999999999999999999999999999999889999999999999999999987543211 123456666
Q ss_pred chhhhh
Q 041082 429 DLQYER 434 (639)
Q Consensus 429 ~~~~~~ 434 (639)
+++.+.
T Consensus 401 ~l~~N~ 406 (455)
T 3v47_A 401 WLHTNP 406 (455)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 666554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-38 Score=357.49 Aligned_cols=343 Identities=20% Similarity=0.208 Sum_probs=298.3
Q ss_pred CcEEEEEeCCCCCccc-----------------CCcCCC--CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-
Q 041082 52 YRVTTLNISGLSLTST-----------------IPSELG--NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT- 111 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~- 111 (639)
.+++.|+|++|.++|. +|..++ ++++|++|+|++|.+.+.+|..|+++++|+.|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 4789999999999996 999999 99999999999999999999999999999999999998
Q ss_pred CCC-CCCccccCC------CCCcEEecccccCccccCc--cccCCCCCCEEecCCCCCC-CC----CCCCccEEEccCCc
Q 041082 112 LFG-EIPEELGNL------AELETLWLQNNFLTGTIHS--SIFNLSSLSDLDLSHNNLT-DV----QIPNLENLLLWGNN 177 (639)
Q Consensus 112 l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~-~~----~l~~L~~L~L~~N~ 177 (639)
++| .+|..++++ ++|++|+|++|+++ .+|. .+.++++|++|+|++|.++ .+ .+++|+.|+|++|+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 998 899999887 99999999999999 7888 8999999999999999998 34 36789999999999
Q ss_pred cCccCCccccCCCC-CcEEEcccCCCcccCccccCCCC--CCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccE
Q 041082 178 FSGAIPHFIFNASK-LSILELQKNSFFDLIPNTFGNLI--NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254 (639)
Q Consensus 178 l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~ 254 (639)
++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+++..|.......... ....+|+.
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~-----~~~~~L~~ 437 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP-----FKGINVSS 437 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC-----CCCCCEEE
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc-----ccCCCCCE
Confidence 99 88988999999 999999999998 6677787765 899999999999986543211000000 11247899
Q ss_pred EEeecCccccccchhhcCCCCCCEEECCCCCCCccccccc-cCC-------cCCcEEEccCCcCCCCCchhhc--CCCCC
Q 041082 255 FSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL-CKL-------QKLQLLSFVDNKLEGPIPYEFC--RLASL 324 (639)
Q Consensus 255 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l-------~~L~~L~l~~N~l~~~~p~~~~--~l~~L 324 (639)
|++++|.+++..+..+..+++|+.|++++|.++ .+|..+ ... ++|+.|++++|+++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 999999999644445667999999999999999 555443 322 29999999999999 6777776 99999
Q ss_pred cEEECCCCcCcccCCccccCCCCCCEEeC------CCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccccc
Q 041082 325 YELDLSGNKLSGSIPTCFGNQTSLRILSL------DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398 (639)
Q Consensus 325 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 398 (639)
+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|.+ +.+|..+. +.|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCE
Confidence 999999999998 8999999999999999 56888999999999999999999999999 77888766 79999
Q ss_pred ccccCCCCCC
Q 041082 399 IDLSMNNFSG 408 (639)
Q Consensus 399 l~ls~N~l~g 408 (639)
||+++|++..
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 9999999864
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-38 Score=349.83 Aligned_cols=356 Identities=20% Similarity=0.177 Sum_probs=273.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 35777788888777777777777888888888888777777777777777777777777777766666777777777777
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC------CCCC--------------------------------------
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPN-------------------------------------- 167 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~-------------------------------------- 167 (639)
++|++++.....+..+++|++|++++|.++++ .+++
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 77777764434444467777777777666542 1333
Q ss_pred ---------------------------------------ccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 168 ---------------------------------------LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 168 ---------------------------------------L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
|+.|++++|++++..+..|..+++|+.|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 444555555555555555777889999999999887 4577
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh---------------hhccCccEEEeecCcccccc--chhhc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE---------------QSSQSLEVFSMFNCNISGGI--LEEIS 271 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~---------------~~~~~l~~l~l~~n~l~~~~--~~~~~ 271 (639)
.+..+++|++|++++|.+++..+. .+..+.+++.+. ....+|+.|++++|.+.+.. +..+.
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGG--CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred hhcccccCCEEECccCCcCcCchh--hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 788899999999999988865431 112222222221 12457889999999988766 67788
Q ss_pred CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch-hhcCCCCCcEEECCCCcCcccCCccccCCCCCCE
Q 041082 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY-EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350 (639)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 350 (639)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+. .|..+++|+.|++++|.+++..|..|..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 899999999999999888888899999999999999999877654 4888999999999999999888889999999999
Q ss_pred EeCCCCcCccc---chhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 351 LSLDSNKLISI---IPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 351 L~l~~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..++.|+.|++++|++++..
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 99999998873 3356888999999999999998888888999999999999999988754
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-38 Score=362.31 Aligned_cols=319 Identities=22% Similarity=0.226 Sum_probs=269.3
Q ss_pred CcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccC-CccccCCcccceeeccCCcCCCCCC
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYFNNNTLFGEIP 117 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p 117 (639)
.|.|..|.+ ...+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 356777877 3468999999999999999999999999999999999776666 8889999999999999999999999
Q ss_pred ccccCCCCCcEEecccccCccccCcc--ccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccC
Q 041082 118 EELGNLAELETLWLQNNFLTGTIHSS--IFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFN 188 (639)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~ 188 (639)
..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++. .+++|++|+|++|.+++..|..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999999877665 99999999999999999874 3789999999999999999998887
Q ss_pred C--CCCcEEEcccCCCcccCccccCCCCC------CCEEEccCCCCCCCCCcchhhccc--cC-----------------
Q 041082 189 A--SKLSILELQKNSFFDLIPNTFGNLIN------LKRLNLYDNYLTSSTPELSFLYSL--SN----------------- 241 (639)
Q Consensus 189 l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~~~l--~~----------------- 241 (639)
+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+++..+.... ..+ ..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-NAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG-GTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH-hhcCcccccceecccccccccccc
Confidence 7 89999999999999988887777666 99999999988765432111 000 00
Q ss_pred --Ccchh------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 242 --CKYLE------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 242 --l~~l~------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
+.... ....+++.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 00000 0135788899999988888888888889999999999999888888888888999999999998888
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS 360 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 360 (639)
.|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88888889999999999998888888888888888888888888765
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-37 Score=353.26 Aligned_cols=353 Identities=22% Similarity=0.233 Sum_probs=188.7
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 34555555555555555555555555555555555554333345666666666666666655555556666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC--------CCCCccEEEccCCccCccCCccc------------------
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--------QIPNLENLLLWGNNFSGAIPHFI------------------ 186 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--------~l~~L~~L~L~~N~l~~~~p~~~------------------ 186 (639)
+|.+++..|..+.++++|++|++++|.++++ .+++|+.|++++|++++..|..+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence 6666666566666666666666666665542 12456666666666655444332
Q ss_pred ---------------------------------cCC--CCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 187 ---------------------------------FNA--SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 187 ---------------------------------~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
..+ ++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 222 237777777777777767777777777777777777765433
Q ss_pred cchhhccccCCcchh-----------------------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 232 ELSFLYSLSNCKYLE-----------------------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~-----------------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
.. +..+.+++.+. ....+|+.+++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 290 ~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 290 HS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp TT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred hh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 21 11122222111 113567788888888887777777777777777766664322
Q ss_pred cc--cccccCC--cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC-ccccCCCCCCEEeCCCCcCcccch
Q 041082 289 SI--PITLCKL--QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP-TCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 289 ~~--p~~~~~l--~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
.. +..+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 11 1111111 244444444455544444455555555555555555544333 344444555555555554444444
Q ss_pred hhhhcCCCCcEEEcccCCCC--CCCccccccccccccccccCCCCC
Q 041082 364 STLWNLKDILYLNLSSNFFI--SPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
..|..+++|+.|++++|.+. +.+|..+..+++|+.|++++|+++
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 44444444444444444432 233334444444444444444443
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=346.88 Aligned_cols=358 Identities=20% Similarity=0.209 Sum_probs=257.0
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35777888888887777777888888888888888887776777788888888888888877777777888888888888
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCccccCCCCC----cEEEcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIFNASKL----SILELQKN 200 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~L~~N 200 (639)
++|++++..+..+.++++|++|+|++|.++.+. +++|+.|++++|++++..|..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 888777665556777778888888877776532 5677777777777766655555544444 45555555
Q ss_pred CCcccCcc------------------------------------------------------------------------
Q 041082 201 SFFDLIPN------------------------------------------------------------------------ 208 (639)
Q Consensus 201 ~l~~~~p~------------------------------------------------------------------------ 208 (639)
.+.+..|.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 44433332
Q ss_pred ---------ccCCCCCCCEEEccCCCCCCCCCcchhh-----------------ccccCCcchh------------hhcc
Q 041082 209 ---------TFGNLINLKRLNLYDNYLTSSTPELSFL-----------------YSLSNCKYLE------------QSSQ 250 (639)
Q Consensus 209 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~l~~l~~l~------------~~~~ 250 (639)
.|..+++|+.|++++|.++..+..+... ..+.+++.+. ...+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 2233344444444444444322111000 0111222111 1245
Q ss_pred CccEEEeecCcccccc--chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCc-hhhcCCCCCcEE
Q 041082 251 SLEVFSMFNCNISGGI--LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIP-YEFCRLASLYEL 327 (639)
Q Consensus 251 ~l~~l~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L 327 (639)
+|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|++.+..| ..|..+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 7888888888887654 67788888999999999988865444 8888889999999988887765 567888889999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 328 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
++++|.+++..|..|..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999888888888888888999999988887 56788888888888999998888888788888888888889988888
Q ss_pred CCcC
Q 041082 407 SGFG 410 (639)
Q Consensus 407 ~g~g 410 (639)
++..
T Consensus 507 ~~~~ 510 (570)
T 2z63_A 507 KSVP 510 (570)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=344.45 Aligned_cols=341 Identities=21% Similarity=0.188 Sum_probs=246.3
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57889999999999887788999999999999999999888999999999999999999998 46665 8999999999
Q ss_pred ccccCcc-ccCccccCCCCCCEEecCCCCCCCC---CCCCc--cEEEccCCcc--CccCCccccCCC-------------
Q 041082 132 QNNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDV---QIPNL--ENLLLWGNNF--SGAIPHFIFNAS------------- 190 (639)
Q Consensus 132 ~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~---~l~~L--~~L~L~~N~l--~~~~p~~~~~l~------------- 190 (639)
++|++++ .+|..|+++++|++|+|++|.+++. .+++| +.|++++|++ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 9999987 4788999999999999999998863 35667 9999999998 666666655532
Q ss_pred ----------------------------------------------------------------------CCcEEEcccC
Q 041082 191 ----------------------------------------------------------------------KLSILELQKN 200 (639)
Q Consensus 191 ----------------------------------------------------------------------~L~~L~L~~N 200 (639)
+|+.|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 4445555555
Q ss_pred CCcccCcccc-----CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCC
Q 041082 201 SFFDLIPNTF-----GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTN 275 (639)
Q Consensus 201 ~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~ 275 (639)
.+.+.+|..+ +.+++|+.+++++|.+ ..+... . ..+ ....+++.|++++|.+..... ...+++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~-~-~~~-------~~~~~L~~L~l~~n~l~~~~~--~~~l~~ 325 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSY-I-YEI-------FSNMNIKNFTVSGTRMVHMLC--PSKISP 325 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHH-H-HHH-------HHTCCCSEEEEESSCCCCCCC--CSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccce-ecchhh-h-hcc-------cccCceeEEEcCCCccccccc--hhhCCc
Confidence 5554455544 5555555555555554 221100 0 000 001346777777776654321 246677
Q ss_pred CCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC--CCchhhcCCCCCcEEECCCCcCcccCCc-cccCCCCCCEEe
Q 041082 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG--PIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILS 352 (639)
Q Consensus 276 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ 352 (639)
|++|++++|.+++.+|..+..+++|+.|++++|++.+ .+|..++.+++|+.|++++|.+++.+|. .+..+++|+.|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 7777777777777777777777777777777777775 4456677777777777777777764443 466777777777
Q ss_pred CCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 353 l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
+++|++++..|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|+|+.+.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 777777776665543 56777777777776 56666667777777777777776544
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-37 Score=348.00 Aligned_cols=361 Identities=21% Similarity=0.221 Sum_probs=250.0
Q ss_pred ceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC
Q 041082 44 GVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 44 gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
.|.|..++ ..++.|||++|.|++..|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++.+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 46787532 368999999999998888899999999999999999998888899999999999999999998
Q ss_pred CCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCcccc
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIF 187 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~ 187 (639)
..|..|.++++|++|+|++|++++..+..|+++++|++|+|++|.++.+. +++|++|+|++|++++..|..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 88889999999999999999999888888999999999999999998643 68999999999999988777665
Q ss_pred CCCCC----cEEEcccCCCcccCccccCC---------------------------------------------------
Q 041082 188 NASKL----SILELQKNSFFDLIPNTFGN--------------------------------------------------- 212 (639)
Q Consensus 188 ~l~~L----~~L~L~~N~l~~~~p~~~~~--------------------------------------------------- 212 (639)
.+.++ ..++++.|.+....+..+..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 43332 34555555554433322211
Q ss_pred ----------------------------------------------------CCCCCEEEccCCCCCCCCCcchhhcccc
Q 041082 213 ----------------------------------------------------LINLKRLNLYDNYLTSSTPELSFLYSLS 240 (639)
Q Consensus 213 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 240 (639)
...|+.|++.+|.+....... +.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~ 349 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----LK 349 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB-----CT
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc-----ch
Confidence 122233333333222211100 00
Q ss_pred CCcchh------------hhccCccEEEeecCccccc-------------------------cchhhcCCCCCCEEECCC
Q 041082 241 NCKYLE------------QSSQSLEVFSMFNCNISGG-------------------------ILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 241 ~l~~l~------------~~~~~l~~l~l~~n~l~~~-------------------------~~~~~~~l~~L~~L~Ls~ 283 (639)
.++.+. ....+++.++++.|.+... .+..+..+++|+.++++.
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence 000000 0123455666655554321 122334455566666665
Q ss_pred CCCCcccc-ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcC-cccCCccccCCCCCCEEeCCCCcCccc
Q 041082 284 NKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL-SGSIPTCFGNQTSLRILSLDSNKLISI 361 (639)
Q Consensus 284 N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~l~~N~l~~~ 361 (639)
|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++++.|++++|.+ .+..|..|..+++|++|++++|+++++
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 55444333 3456667777777777777777777777777777777777753 344566777777777777777777777
Q ss_pred chhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCc
Q 041082 362 IPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409 (639)
Q Consensus 362 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 409 (639)
.|..|.++++|++|+|++|++++..|..+..+++|+.||+++|+|++.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 777777777777777777777776666777777777777777777654
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-37 Score=346.18 Aligned_cols=370 Identities=20% Similarity=0.170 Sum_probs=306.9
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4677777786 4676665 799999999999999888899999999999999999999999999999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCc-cCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSG-AIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+++..|..|.++++|++|+|++|.++++. +++|++|++++|++++ .+|..+.++++|+.|++++|.+.+..|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 99999999999999999999999998643 7899999999999986 6799999999999999999999998888
Q ss_pred ccCCCCCCC----EEEccCCCCCCCCCcchhh------------------------------------------------
Q 041082 209 TFGNLINLK----RLNLYDNYLTSSTPELSFL------------------------------------------------ 236 (639)
Q Consensus 209 ~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 236 (639)
.|+.+++|+ +|++++|.+++.++.....
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 777665544 6777777666443321000
Q ss_pred ------------------------------cccc----------------------CCcc--------------------
Q 041082 237 ------------------------------YSLS----------------------NCKY-------------------- 244 (639)
Q Consensus 237 ------------------------------~~l~----------------------~l~~-------------------- 244 (639)
..+. +++.
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~ 331 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCC
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccc
Confidence 0000 0000
Q ss_pred -hhh------------hccCccEEEeecCccccc--cchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCc
Q 041082 245 -LEQ------------SSQSLEVFSMFNCNISGG--ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309 (639)
Q Consensus 245 -l~~------------~~~~l~~l~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 309 (639)
+.. ...+|+.+++++|.+++. ++..+..+++|++|++++|.+++ +|..+..+++|+.|++++|+
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 000 123566777777777665 37778889999999999999885 66889999999999999999
Q ss_pred CCCCCc-hhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc-cchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 310 LEGPIP-YEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS-IIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 310 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
+.+..| ..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+.+ .+|..|..+++|++|++++|.+++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 999888 689999999999999999999999999999999999999999998 578899999999999999999999999
Q ss_pred cccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 388 LEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+..+++|+.|++++|++++...... +....++.++++++.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHY-----NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGT-----TTCTTCCEEECTTSC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHc-----cCCCcCCEEECCCCc
Confidence 999999999999999999987522111 123456667766654
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-36 Score=343.41 Aligned_cols=345 Identities=21% Similarity=0.205 Sum_probs=253.0
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC-----CCCc----cccCCC
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG-----EIPE----ELGNLA 124 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~----~~~~l~ 124 (639)
++.|++++|.+++..|..|+.+++|++|+|++|.+.+..|..|.++++|+.|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6667777777766666666777777777777777776666667777777777776654433 2232 566777
Q ss_pred CCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC----------CCCCccEEEccCCccCccCCccccCCCCCcE
Q 041082 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194 (639)
Q Consensus 125 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 194 (639)
+|++|+|++|.+++..+..|.++++|++|++++|.++.. ..++|+.|++++|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 777777777777777777777777777777777764321 1246778888888888777777777888888
Q ss_pred EEcccCCCcccCc-cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccc--cccchhhc
Q 041082 195 LELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNIS--GGILEEIS 271 (639)
Q Consensus 195 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~--~~~~~~~~ 271 (639)
|++++|.+.+.+| ..|..+++|++|++++|++++..+.. +. ..++++.|++++|.+. +.+|..+.
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~-------~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-----FA-------LVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-----TT-------TCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-----hh-------cCcccccchhccccccccccCCcccc
Confidence 8888888776544 56777888888888888776543321 11 1246778888888776 55677788
Q ss_pred CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCc--------hhhcCCCCCcEEECCCCcCcccCCcccc
Q 041082 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIP--------YEFCRLASLYELDLSGNKLSGSIPTCFG 343 (639)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 343 (639)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+ ..|..+++|+.|++++|+++...+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 88888888888888887777778888888888888888875422 2367788888888888888866566788
Q ss_pred CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccc-cccccccccccCCCCCCcC
Q 041082 344 NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG-NLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 344 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~g~g 410 (639)
++++|+.|++++|+++++.+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.+-.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 888888888888888887777788888888888888888887777676 6788888888888887643
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=337.07 Aligned_cols=350 Identities=21% Similarity=0.216 Sum_probs=230.1
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46778888888887776677888888888888888888777778888888888888888877 45554 7788888888
Q ss_pred ccccCccc-cCccccCCCCCCEEecCCCCCCCCC---CCCc--cEEEccCCcc--CccCCccccCCC-------------
Q 041082 132 QNNFLTGT-IHSSIFNLSSLSDLDLSHNNLTDVQ---IPNL--ENLLLWGNNF--SGAIPHFIFNAS------------- 190 (639)
Q Consensus 132 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~---l~~L--~~L~L~~N~l--~~~~p~~~~~l~------------- 190 (639)
++|++++. +|..|.++++|++|+|++|.++... +++| +.|++++|++ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 88888763 4577888888888888888776532 3445 7888888877 666665554432
Q ss_pred -------------CCcEEEcccCCC-----ccc---------------------------CccccCCCCCCCEEEccCCC
Q 041082 191 -------------KLSILELQKNSF-----FDL---------------------------IPNTFGNLINLKRLNLYDNY 225 (639)
Q Consensus 191 -------------~L~~L~L~~N~l-----~~~---------------------------~p~~~~~l~~L~~L~Ls~N~ 225 (639)
+|+.+++++|.. .+. .+..+ ..++|++|++++|.
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccE
Confidence 333333333320 000 00000 11256666666666
Q ss_pred CCCCCCcchhhccccCCcchhh-------------------hccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC
Q 041082 226 LTSSTPELSFLYSLSNCKYLEQ-------------------SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286 (639)
Q Consensus 226 l~~~~~~~~~~~~l~~l~~l~~-------------------~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 286 (639)
+++..|...+.....+++.+.. ...+++.+++++|.+..... ...+++|++|++++|.+
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCcc
Confidence 6643322111000111111110 01347777777777653221 15677788888888888
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCC--chhhcCCCCCcEEECCCCcCcccCC-ccccCCCCCCEEeCCCCcCcccch
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPI--PYEFCRLASLYELDLSGNKLSGSIP-TCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
++.+|..+..+++|+.|++++|++++.. |..|..+++|+.|++++|.+++.+| ..+..+++|++|++++|++++..|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 8777777777888888888888877633 4567777888888888888877344 457777788888888888777666
Q ss_pred hhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
..+. ++|++|++++|+++ .+|..+..++.|+.|++++|+|+.+.
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 5443 57778888888776 46666667778888888888877544
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.3e-37 Score=348.24 Aligned_cols=341 Identities=20% Similarity=0.264 Sum_probs=297.7
Q ss_pred CcEEEEEeCCCCCcc-----------------cCCcCCC--CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-
Q 041082 52 YRVTTLNISGLSLTS-----------------TIPSELG--NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT- 111 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~- 111 (639)
.+++.|+|++|.++| .+|..++ ++++|++|+|++|.+.+.+|..|+++++|+.|+|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 478999999999998 4999988 99999999999999999999999999999999999998
Q ss_pred CCC-CCCccccCCC-------CCcEEecccccCccccCc--cccCCCCCCEEecCCCCCCCCC----CCCccEEEccCCc
Q 041082 112 LFG-EIPEELGNLA-------ELETLWLQNNFLTGTIHS--SIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNN 177 (639)
Q Consensus 112 l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~----l~~L~~L~L~~N~ 177 (639)
+++ .+|..+++++ +|++|+|++|+++ .+|. .+.++++|+.|+|++|.++.++ +++|+.|+|++|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence 988 8998777665 9999999999999 8888 8999999999999999998653 6789999999999
Q ss_pred cCccCCccccCCCC-CcEEEcccCCCcccCccccCCCCC--CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccE
Q 041082 178 FSGAIPHFIFNASK-LSILELQKNSFFDLIPNTFGNLIN--LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254 (639)
Q Consensus 178 l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~ 254 (639)
++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+++..|.+. ..+..+ ...+|+.
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--~~l~~~-----~~~~L~~ 677 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--CSMDDY-----KGINAST 677 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--SCTTTC-----CCCCEEE
T ss_pred cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch--hhhccc-----cCCCcCE
Confidence 99 89988999999 999999999998 66888877755 9999999999998655332 111111 1247899
Q ss_pred EEeecCccccccchh-hcCCCCCCEEECCCCCCCccccccccC--------CcCCcEEEccCCcCCCCCchhhc--CCCC
Q 041082 255 FSMFNCNISGGILEE-ISNLTNLTAIYLAGNKLNGSIPITLCK--------LQKLQLLSFVDNKLEGPIPYEFC--RLAS 323 (639)
Q Consensus 255 l~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~l~~N~l~~~~p~~~~--~l~~ 323 (639)
|++++|.+.. +|.. +..+++|+.|+|++|.++ .+|..+.. +++|+.|++++|+++ .+|..+. .+++
T Consensus 678 L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 678 VTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp EECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred EEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 9999999995 5554 458999999999999998 56655433 238999999999999 6788876 8999
Q ss_pred CcEEECCCCcCcccCCccccCCCCCCEEeCCC------CcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccc
Q 041082 324 LYELDLSGNKLSGSIPTCFGNQTSLRILSLDS------NKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 324 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 397 (639)
|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 9999999999998 788999999999999976 888999999999999999999999999 78888766 6999
Q ss_pred cccccCCCCCCc
Q 041082 398 GIDLSMNNFSGF 409 (639)
Q Consensus 398 ~l~ls~N~l~g~ 409 (639)
.||+++|++..+
T Consensus 831 ~LdLs~N~l~~i 842 (876)
T 4ecn_A 831 ILDIADNPNISI 842 (876)
T ss_dssp EEECCSCTTCEE
T ss_pred EEECCCCCCCcc
Confidence 999999998653
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=325.50 Aligned_cols=310 Identities=20% Similarity=0.166 Sum_probs=218.7
Q ss_pred CCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc
Q 041082 60 SGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT 139 (639)
Q Consensus 60 ~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 139 (639)
++++++ .+|..+. +++++|+|++|.+++..|..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|++++.
T Consensus 19 ~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 19 HRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 334454 4565554 5788899999998888888888889999999999988888888888899999999999988877
Q ss_pred cCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCC
Q 041082 140 IHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL 213 (639)
Q Consensus 140 ~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 213 (639)
.+..|.++++|++|+|++|.++.+ .+++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+..|..+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 666778888888777777766542 13344444444444444444444444455555555554444444444444
Q ss_pred CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccc
Q 041082 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293 (639)
Q Consensus 214 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 293 (639)
++|+.|+++ +|.+.+..+..+..+++|+.|++++|.+.+.+|..
T Consensus 176 ~~L~~L~l~------------------------------------~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 176 HGLIVLRLR------------------------------------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp TTCCEEEEE------------------------------------SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred CCCcEEeCC------------------------------------CCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 444444444 44444444455666777777777777766666666
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCc
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDIL 373 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 373 (639)
.....+|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+..|..|..+++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 55566777888888877766556777778888888888888777777777788888888888888887777777788888
Q ss_pred EEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 374 YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 374 ~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 88888888777666677777888888888887764
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=327.30 Aligned_cols=361 Identities=20% Similarity=0.163 Sum_probs=281.1
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.|++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999998 5787776 89999999999999888899999999999999999999999999999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccCCCCC--cEEEcccCCC--c
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFNASKL--SILELQKNSF--F 203 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~ 203 (639)
+++. +|.. .+++|++|+|++|.++++ .+++|++|++++|++++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9994 5655 899999999999999874 26799999999999986 356677788 9999999999 7
Q ss_pred ccCccccCCCC-CCCEEEccCCCCCCCCCcc-----------------------------hhhccccCCcchhh------
Q 041082 204 DLIPNTFGNLI-NLKRLNLYDNYLTSSTPEL-----------------------------SFLYSLSNCKYLEQ------ 247 (639)
Q Consensus 204 ~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~-----------------------------~~~~~l~~l~~l~~------ 247 (639)
+..|..+..+. ....+++++|.+.+..+.. ..+..+.+++.+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 77777776643 1223344444443321110 00111222222111
Q ss_pred -----------hccCccEEEeecCccccccchhh-----cCCCCCCEEECCCCCCCcccc-c------------------
Q 041082 248 -----------SSQSLEVFSMFNCNISGGILEEI-----SNLTNLTAIYLAGNKLNGSIP-I------------------ 292 (639)
Q Consensus 248 -----------~~~~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~p-~------------------ 292 (639)
...+++.|++++|.+.|.+|..+ +.+++|+.+++++|.+ .+| .
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 02378899999999988888777 6666666666665555 222 0
Q ss_pred ------c-ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc--cCCccccCCCCCCEEeCCCCcCcccch
Q 041082 293 ------T-LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG--SIPTCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 293 ------~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
. +..+++|++|++++|++++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|.+.+.+|
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 1 2678899999999999999999999999999999999999997 556789999999999999999999555
Q ss_pred h-hhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 364 S-TLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 364 ~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
. .+..+++|++|++++|.+++.+|..+. +.|+.|++++|+|+.+..... ....++.++++.+.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV------KLEALQELNVASNQ 455 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG------GCTTCCEEECCSSC
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh------cCCCCCEEECCCCc
Confidence 5 478899999999999999988887665 789999999999986543221 23345666666554
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=329.34 Aligned_cols=369 Identities=21% Similarity=0.207 Sum_probs=294.5
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
.+.++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 444455565 4666664 5799999999999988888999999999999999999998889999999999999999999
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCc-cCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSG-AIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
++..|..|.++++|++|++++|.++.+ .+++|++|++++|.+++ .+|..+.++++|+.|++++|.+.+..|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 998889999999999999999999874 36899999999999987 57999999999999999999999998888
Q ss_pred cCCCCCC----CEEEccCCCCCCCCCcchhhccc----------------------cC----------------------
Q 041082 210 FGNLINL----KRLNLYDNYLTSSTPELSFLYSL----------------------SN---------------------- 241 (639)
Q Consensus 210 ~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~l----------------------~~---------------------- 241 (639)
++.+++| +.+++++|.+++.++.......+ .+
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 8888888 89999999887654421100000 00
Q ss_pred -----Cc-------------c-------hhhhccCccEEEeecCcccc---------------------ccch-h-----
Q 041082 242 -----CK-------------Y-------LEQSSQSLEVFSMFNCNISG---------------------GILE-E----- 269 (639)
Q Consensus 242 -----l~-------------~-------l~~~~~~l~~l~l~~n~l~~---------------------~~~~-~----- 269 (639)
+. . .-....+++.+++++|.+.+ .+|. .
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~ 328 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCC
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccC
Confidence 00 0 00001233333333333321 1111 0
Q ss_pred --------------hcCCCCCCEEECCCCCCCccc--cccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCc
Q 041082 270 --------------ISNLTNLTAIYLAGNKLNGSI--PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333 (639)
Q Consensus 270 --------------~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 333 (639)
...+++|+.|++++|.+++.. |..+..+++|+.|++++|++.+..+. +..+++|+.|++++|.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred EEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 046789999999999998654 67788999999999999999876555 9999999999999999
Q ss_pred CcccCC-ccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCC-CCCccccccccccccccccCCCCCCcCc
Q 041082 334 LSGSIP-TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI-SPLPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 334 l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++...
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 998776 57899999999999999999999999999999999999999997 5789999999999999999999987532
Q ss_pred ceEEEecCCceeeeEEechhhhh
Q 041082 412 IYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 412 vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
... +....++.++++.+.
T Consensus 488 ~~~-----~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 488 TAF-----NSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTT-----TTCTTCCEEECCSSC
T ss_pred hhh-----hcccCCCEEeCCCCc
Confidence 111 123345666665543
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=344.73 Aligned_cols=345 Identities=25% Similarity=0.241 Sum_probs=204.7
Q ss_pred CcEEEEEeCCCCCcccC-CcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCcc--ccCCCCCcE
Q 041082 52 YRVTTLNISGLSLTSTI-PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE--LGNLAELET 128 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~ 128 (639)
.+++.|+|++|...+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+|.. |+++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 35677778777655555 566777788888888888777777777777888888888888777766654 777777888
Q ss_pred EecccccCccccC-ccccCCCCCCEEecCCCCCCCCC------C--CC------------------------------cc
Q 041082 129 LWLQNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTDVQ------I--PN------------------------------LE 169 (639)
Q Consensus 129 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~------l--~~------------------------------L~ 169 (639)
|+|++|.+++..+ ..|.++++|++|+|++|.+++.. + ++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 8888887776654 46777777777777777765421 1 23 55
Q ss_pred EEEccCCccCccCCccccC--------------------------------------CCCCcEEEcccCCCcccCccccC
Q 041082 170 NLLLWGNNFSGAIPHFIFN--------------------------------------ASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 170 ~L~L~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
.|++++|.+++.+|..+.. .++|+.|++++|.+.+..|..|.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 5555555554443332211 14566666666666666666666
Q ss_pred CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc
Q 041082 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 291 (639)
.+++|+.|+|++|++++..+.. +.. ..+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~-----~~~-------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEA-----FYG-------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTT-----TTT-------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred cCCCCCEEECCCCcCCCCChHH-----hcC-------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 6666666666666666543321 111 2356666666666666656666666666666666666665555
Q ss_pred ccccCCcCCcEEEccCCcCCCCC----------------------------------------chhhcCCCCCcEEECCC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPI----------------------------------------PYEFCRLASLYELDLSG 331 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~----------------------------------------p~~~~~l~~L~~L~Ls~ 331 (639)
..|..+++|+.|++++|.+++.. +..++.+++|+.|++++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 55666666666666666554321 01123455666666666
Q ss_pred CcCcccCCc-cccCCCCCCEEeCCCCcCc-----ccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCC
Q 041082 332 NKLSGSIPT-CFGNQTSLRILSLDSNKLI-----SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 332 N~l~~~~p~-~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
|.+++..+. .+..+++|+.|++++|.+. +..|..|..+++|+.|+|++|.+++..|..+..+++|+.|++++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 666543222 2223344444444444443 2222334444555555555555555555555555555555555555
Q ss_pred CCC
Q 041082 406 FSG 408 (639)
Q Consensus 406 l~g 408 (639)
|++
T Consensus 516 l~~ 518 (844)
T 3j0a_A 516 LTV 518 (844)
T ss_dssp CSS
T ss_pred CCc
Confidence 544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.6e-35 Score=324.50 Aligned_cols=360 Identities=22% Similarity=0.175 Sum_probs=277.3
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++++++ +|..+. ++|++|+|++|.+.+..|..|.++++|++|++++|++++..|..|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999986 777665 89999999999999888899999999999999999999999999999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCccccCCCCC--cEEEcccCCC--c
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIFNASKL--SILELQKNSF--F 203 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~ 203 (639)
+++ .+|.. .+++|++|+|++|.++++. +++|++|+|++|++++. .+..+++| +.|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 45655 8999999999999998753 67999999999999863 34455556 9999999999 7
Q ss_pred ccCccccCCCC--CCCEEEccCCCCCCCCCcch---------------------------hhccccCCcchhh-------
Q 041082 204 DLIPNTFGNLI--NLKRLNLYDNYLTSSTPELS---------------------------FLYSLSNCKYLEQ------- 247 (639)
Q Consensus 204 ~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~---------------------------~~~~l~~l~~l~~------- 247 (639)
+..|..|..+. .+ .+++++|.+.+..+... .+..+..+..+..
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 77777776544 11 23444444433221100 0011111111110
Q ss_pred ----------hccCccEEEeecCccccccchhh-----cCC--------------------------CCCCEEECCCCCC
Q 041082 248 ----------SSQSLEVFSMFNCNISGGILEEI-----SNL--------------------------TNLTAIYLAGNKL 286 (639)
Q Consensus 248 ----------~~~~l~~l~l~~n~l~~~~~~~~-----~~l--------------------------~~L~~L~Ls~N~l 286 (639)
...++++|++++|.+.|.+|..+ ..+ .+|+.|++++|.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 01378899999999988777665 222 3466777777766
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCccc--CCccccCCCCCCEEeCCCCcCcccch-
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGS--IPTCFGNQTSLRILSLDSNKLISIIP- 363 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~p- 363 (639)
.... ....+++|++|++++|++++.+|..+..+++|+.|++++|++++. +|..|..+++|++|++++|++.+.+|
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 4221 126789999999999999999999999999999999999999974 35678999999999999999999444
Q ss_pred hhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+..+++|++|++++|.+++.+|..+. +.|+.|++++|+++.+.... .....++.++++++.
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~------~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV------THLQALQELNVASNQ 484 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT------TSSCCCSEEECCSSC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh------cCCCCCCEEECCCCC
Confidence 4588899999999999999887776654 68999999999998543321 123456666666654
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7e-35 Score=325.00 Aligned_cols=305 Identities=17% Similarity=0.170 Sum_probs=254.4
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+.+++.|++++|.+....+..|.++++|+.|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788888888888886655667788888888888888888888888888888888888888888888788888888888
Q ss_pred ecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 154 DLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 154 ~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
+|++|.|+.+. +++|++|+|++|.+++..|..+..+++|+.|++++|.+.+.. ++.+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888887643 678888999999998888888999999999999999998763 556788999999999887
Q ss_pred CCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC
Q 041082 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 307 (639)
+... ..+++.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++
T Consensus 206 ~l~~-----------------~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 TLAI-----------------PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp EEEC-----------------CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred cccC-----------------CchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 5311 236788899999887543322 3689999999999986 46788899999999999
Q ss_pred CcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 308 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
|.+.+.+|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+++.
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-- 339 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-- 339 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC--
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc--
Confidence 99999999999999999999999999986 46677788999999999999985 667788899999999999998764
Q ss_pred cccccccccccccccCCCCCC
Q 041082 388 LEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g 408 (639)
.+..++.|+.|++++|+|.+
T Consensus 340 -~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 340 -KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCCTTCCCSEEECCSSCEEH
T ss_pred -ChhhcCCCCEEEeeCCCCCC
Confidence 26677889999999999865
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.7e-35 Score=323.07 Aligned_cols=371 Identities=21% Similarity=0.203 Sum_probs=285.4
Q ss_pred ecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCC
Q 041082 46 SCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAE 125 (639)
Q Consensus 46 ~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 125 (639)
.|.. ..+ .+.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|..|+++++
T Consensus 3 ~C~~--~~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDA--SGV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECT--TSE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCC--Cce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 5654 334 789999998 5677665 79999999999999988999999999999999999999999999999999
Q ss_pred CcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCC-ccccCCCCCcEEEc
Q 041082 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIP-HFIFNASKLSILEL 197 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L 197 (639)
|++|+|++|++++..|..|.++++|++|+|++|.++++ .+++|++|++++|++.+.+| ..+.++++|+.|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 99999999999998888899999999999999999853 26799999999999555555 68999999999999
Q ss_pred ccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhh-----------------hccCccEEEeecC
Q 041082 198 QKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ-----------------SSQSLEVFSMFNC 260 (639)
Q Consensus 198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~-----------------~~~~l~~l~l~~n 260 (639)
++|.+.+..|..++.+++|++|+++.|.+...+... ...+.+++.+.. ...+++.+++++|
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHH--HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cCCcccccChhhhhccccCceEecccCcccccchhh--HhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 999999999999999999999999999876432211 111222221110 1123333444333
Q ss_pred ccccccchh---------------------------------------------------------------hcCCCCCC
Q 041082 261 NISGGILEE---------------------------------------------------------------ISNLTNLT 277 (639)
Q Consensus 261 ~l~~~~~~~---------------------------------------------------------------~~~l~~L~ 277 (639)
.+.+..+.. +...++|+
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 332211110 11235688
Q ss_pred EEECCCCCCCccccccc-cCCcCCcEEEccCCcCCCCCch---hhcCCCCCcEEECCCCcCcccCC--ccccCCCCCCEE
Q 041082 278 AIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGPIPY---EFCRLASLYELDLSGNKLSGSIP--TCFGNQTSLRIL 351 (639)
Q Consensus 278 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 351 (639)
.|++++|.+. .+|..+ ..+++|+.|++++|++.+.+|. .++.+++|+.|++++|++++..+ ..+..+++|++|
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 8888888886 567665 5799999999999999987653 37889999999999999987543 568899999999
Q ss_pred eCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccc------------------cccccccccccccCCCCCCcCcce
Q 041082 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE------------------IGNLKVLVGIDLSMNNFSGFGSIY 413 (639)
Q Consensus 352 ~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~------------------~~~l~~L~~l~ls~N~l~g~g~vy 413 (639)
++++|+++. +|..+..+++|++|++++|.+... |.. +..++.|+.|++++|+|+.+...
T Consensus 393 ~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~- 469 (549)
T 2z81_A 393 DISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA- 469 (549)
T ss_dssp ECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-
T ss_pred ECCCCCCcc-CChhhcccccccEEECCCCCcccc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-
Confidence 999999985 677788888888888888887532 221 12577888889999988765431
Q ss_pred EEEecCCceeeeEEechhhhhh
Q 041082 414 KARIQDGMKVAVKVFDLQYERA 435 (639)
Q Consensus 414 ~~~l~~g~~vavK~l~~~~~~~ 435 (639)
+....++.++++++..
T Consensus 470 ------~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 470 ------SLFPVLLVMKISRNQL 485 (549)
T ss_dssp ------GGCTTCCEEECCSSCC
T ss_pred ------ccCccCCEEecCCCcc
Confidence 1234567777776643
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-34 Score=306.37 Aligned_cols=305 Identities=17% Similarity=0.175 Sum_probs=260.0
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.++++++|++++|.+....+..|..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999886555557889999999999999988888889999999999999999998888889999999999
Q ss_pred ecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 154 DLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 154 ~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
+|++|.++.+. +++|++|++++|++++..|..+..+++|+.|++++|.+.+.. ++.+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 99999888643 678999999999999888888999999999999999998763 567889999999999887
Q ss_pred CCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC
Q 041082 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 307 (639)
+.. ...+++.+++++|.+... +. ...++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 200 ~~~-----------------~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 200 TLA-----------------IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp EEE-----------------CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ccC-----------------CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 531 123688899999988764 32 2357899999999999864 5788899999999999
Q ss_pred CcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 308 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
|++.+..|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++.+ +|..+..+++|++|++++|.++.. |
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred CcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C
Confidence 99999889999999999999999999986 46667888999999999999986 566678899999999999998764 3
Q ss_pred cccccccccccccccCCCCCC
Q 041082 388 LEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g 408 (639)
+..++.|+.|++++|+|.+
T Consensus 335 --~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEH
T ss_pred --chhhccCCEEEcCCCCccc
Confidence 6778899999999999865
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-33 Score=306.06 Aligned_cols=320 Identities=29% Similarity=0.384 Sum_probs=216.4
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++|.+++..| ++++++|++|++++|.+.+..| +.++++|++|++++|.+.+..+ +.++++|++|+|+
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 56666666666665433 6666666666666666664433 6666666666666666665433 6666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+|.+++. + .+..+++|++|+++ |.+... .+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 143 ~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 143 SNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCccCCC-h-hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 6666643 2 36666666666665 333332 356677777777776643 235666777777777777766554
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
++.+++|+.|++++|.+++.+ .+. ...+|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~-------~l~-------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIG-------TLA-------SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-------GGG-------GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred -ccccCCCCEEECCCCCcccch-------hhh-------cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 566777777777777766531 111 12467778888887776544 6777888888888888776
Q ss_pred cccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc
Q 041082 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN 368 (639)
Q Consensus 289 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 368 (639)
..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+.+. ..+..
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 351 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 351 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc
Confidence 544 6677788888888888776544 6777888888888888877655 66778888888888887775 35677
Q ss_pred CCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCc
Q 041082 369 LKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 369 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|+.|++++|++++..| +..++.|+.|++++|++++...
T Consensus 352 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 7888888888888777666 6777788888888888776543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.6e-34 Score=297.24 Aligned_cols=277 Identities=18% Similarity=0.226 Sum_probs=186.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccccCC----CCCCCCcCccceecCC--------CCCcEEEEEeCCCCCcccCCcCCC
Q 041082 6 DNNHLSFQVFVLKGHVTDDPTNFLAKNW----NTSSTVCHWTGVSCDV--------RSYRVTTLNISGLSLTSTIPSELG 73 (639)
Q Consensus 6 ~~~~~~~~ll~~k~~~~~~~~~~l~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~p~~l~ 73 (639)
...++.+||++||+.+..|+.+++.. | ....++|.|.|+.|.. ...+|+.|+|++|.++ .+|..++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 34678899999999876688788877 9 3456899999999952 2357888888888887 6787888
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
++++|++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..|+++++|++|+|++|++.+.+|..+...
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------
Confidence 8888888888888888 78888888888888888888887 678888888888888888888877777655431
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
.++..+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++.
T Consensus 174 ---------------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l---- 221 (328)
T 4fcg_A 174 ---------------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL---- 221 (328)
T ss_dssp ---------------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC----
T ss_pred ---------------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC----
Confidence 01122334555666666666555 3455555666666666666555432
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.
T Consensus 222 ---------------------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 222 ---------------------------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ---------------------------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ---------------------------------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 22234455555556665555555555555555555555555555555
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 357 (639)
+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++..|.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 55555555555555555555555555555555555555555443
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-33 Score=313.79 Aligned_cols=395 Identities=22% Similarity=0.248 Sum_probs=287.3
Q ss_pred cccccCCCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 27 NFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 27 ~~l~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..++. |+.. .|..|..-.|.... ...+-++.+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+
T Consensus 11 ~~~~~-~~~~-~p~~~~~c~~~~~~---~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~ 82 (635)
T 4g8a_A 11 DKLAA-ANSS-IPESWEPCVEVVPN---ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 82 (635)
T ss_dssp ----------------CCSEEEETT---TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred chhhc-ccCC-CCCCCCCccccCCC---CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEE
Confidence 34555 5433 34456543343222 23477888887 5777665 5899999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSG 180 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~ 180 (639)
|++|++.+..|..|.+|++|++|+|++|+|++..+..|.++++|++|+|++|.++++. +++|++|+|++|++++
T Consensus 83 Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 83 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 9999999988889999999999999999999888889999999999999999998753 6899999999999976
Q ss_pred -cCCccccCCCCCcEEEcccCCCcccCccccCCCCCC----CEEEccCCCCCCCCCcchhh-------------------
Q 041082 181 -AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL----KRLNLYDNYLTSSTPELSFL------------------- 236 (639)
Q Consensus 181 -~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~------------------- 236 (639)
.+|..+..+++|+.|++++|++.+..|..|..+.++ ..++++.|.++..++.....
T Consensus 163 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~ 242 (635)
T 4g8a_A 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 242 (635)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHH
T ss_pred CCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccc
Confidence 468888999999999999999999988887665544 36788888776443211000
Q ss_pred ---ccccCC---------------------------------------------------------cchh----------
Q 041082 237 ---YSLSNC---------------------------------------------------------KYLE---------- 246 (639)
Q Consensus 237 ---~~l~~l---------------------------------------------------------~~l~---------- 246 (639)
..+..+ ..+.
T Consensus 243 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (635)
T 4g8a_A 243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK 322 (635)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG
T ss_pred hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc
Confidence 000000 0000
Q ss_pred --hhccCccEEEeecCccccccch-------------------hhcCCCCCCEEECCCCCCCcc--cc------------
Q 041082 247 --QSSQSLEVFSMFNCNISGGILE-------------------EISNLTNLTAIYLAGNKLNGS--IP------------ 291 (639)
Q Consensus 247 --~~~~~l~~l~l~~n~l~~~~~~-------------------~~~~l~~L~~L~Ls~N~l~~~--~p------------ 291 (639)
.....++.+++.+|.+.+..+. ....+++|+.|+++.|.+... .+
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhh
Confidence 0012455666666655432211 123467788888888876421 12
Q ss_pred -----------ccccCCcCCcEEEccCCcCCCCC-chhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcC-
Q 041082 292 -----------ITLCKLQKLQLLSFVDNKLEGPI-PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL- 358 (639)
Q Consensus 292 -----------~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l- 358 (639)
..+..+++|+.+++..|+..... +..|..+.+++.++++.|.+.+..|..+..+++|+.|++++|.+
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 23344556666666665554443 35678899999999999999999999999999999999999985
Q ss_pred cccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 359 ISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 359 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
.+..|..|..+++|++|++++|++++..|..+.++++|+.|+|++|+|++...... +....++.++++.+.
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-----KCLNSLQVLDYSLNH 553 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG-----TTCTTCCEEECTTSC
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH-----hCCCCCCEEECCCCc
Confidence 45678889999999999999999999999999999999999999999987543211 123456677777654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-32 Score=295.32 Aligned_cols=311 Identities=20% Similarity=0.158 Sum_probs=249.1
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+.+. | ++++++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4688999999999874 5 699999999999999999974 4 89999999999999999875 4 899999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC---CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
++|++++. | +..+++|++|++++|.++++. +++|+.|++++|+..+.+ .+..+++|+.|++++|++++. |
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~- 186 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D- 186 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c-
Confidence 99999974 4 899999999999999998864 678999999999776666 477899999999999999885 4
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
++.+++|+.|++++|.+++.. +.. ..+|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~--------l~~-------l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLD--------LNQ-------NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--------CTT-------CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred -cccCCCCCEEECcCCcCCeec--------ccc-------CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 889999999999999998752 122 2478899999999998 45 7889999999999999998
Q ss_pred cccccccCCc-------CCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCc--------cccCCCCCCEEeC
Q 041082 289 SIPITLCKLQ-------KLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT--------CFGNQTSLRILSL 353 (639)
Q Consensus 289 ~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~l 353 (639)
..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 6554444443 45566666666666665 46778889999998887666553 2445567788888
Q ss_pred CCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCc
Q 041082 354 DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409 (639)
Q Consensus 354 ~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 409 (639)
++|++++. + +..+++|+.|++++|++++ ++.|..+++++|.|.|.
T Consensus 326 ~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 326 NNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp TTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred CCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 88888774 2 6777788888888887765 23455566677766653
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-32 Score=281.30 Aligned_cols=302 Identities=25% Similarity=0.359 Sum_probs=208.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.+.. +| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+... +.|.++++|++|+|+
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECc
Confidence 45566666666653 23 25566666666666666653 232 66666666666666665542 246666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGN 212 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 212 (639)
+|.+++..+ +..+++|++|++++| .....++. +..+++|+.|++++|.+.+..+ +..
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n------------------~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~ 175 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGAN------------------HNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IAN 175 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTC------------------TTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred CCcccCchh--hccCCceeEEECCCC------------------CCcccccc-hhhCCCCcEEEecCCCcCCchh--hcc
Confidence 666654322 555555555555555 33322222 5566667777777766655443 566
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+++|+.|++++|.+++.++ +. ...+++.+++++|.+.+..+ +..+++|+.|++++|.+++..+
T Consensus 176 l~~L~~L~l~~n~l~~~~~-------~~-------~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-------LA-------SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-------GG-------GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCEEEccCCccccccc-------cc-------CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 6777777777776655321 11 12356667777776665433 6778899999999999886544
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCC
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 372 (639)
+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 78889999999999998864 4688899999999999999865 458889999999999999999999999999999
Q ss_pred cEEEcccCCCCCCCccccccccccccccccCCCCC
Q 041082 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 373 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
++|++++|++++..| +..++.|+.+|+++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999988766 888999999999999875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9e-33 Score=299.97 Aligned_cols=294 Identities=20% Similarity=0.214 Sum_probs=246.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
+.++.+++.++ .+|..+. +.++.|+|++|++.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56788888887 6787665 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCc
Q 041082 159 NLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232 (639)
Q Consensus 159 ~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 232 (639)
.++.+. +++|++|+|++|++++..|..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 887642 455666666666666655666666666666666666666555555666666666665555544
Q ss_pred chhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 233 ~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 166 -------------------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 166 -------------------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp -------------------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred -------------------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 3345567889999999999999998888899999999999999999888
Q ss_pred CCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccc
Q 041082 313 PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392 (639)
Q Consensus 313 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 392 (639)
.+|..+....+|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 88877777779999999999999766678999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCcCc
Q 041082 393 LKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 393 l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|+.|++++|+|+++..
T Consensus 295 l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CTTCCEEECCSSCCSCCCG
T ss_pred cccCCEEECCCCcCceeCH
Confidence 9999999999999987654
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.7e-33 Score=297.62 Aligned_cols=322 Identities=27% Similarity=0.289 Sum_probs=224.0
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccc-------------ceeeccCCcCCCCCCc
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL-------------LSIYFNNNTLFGEIPE 118 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~ 118 (639)
.+++.|++++|.+ |.+|.+|+++++|++|++++|.+.|.+|.+++++++| +.|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4688899999999 8999999999999999999999999999999999875 999999999886 344
Q ss_pred cccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-C-CCccEEEccCCccCccCCccccCCCCCcEEE
Q 041082 119 ELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-I-PNLENLLLWGNNFSGAIPHFIFNASKLSILE 196 (639)
Q Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 196 (639)
. .++|++|+|++|++++ +|.. +++|++|++++|.++++. + ++|++|++++|++++ +| .+.++++|++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 2 3789999999999997 5643 478999999999998753 3 689999999999986 67 588899999999
Q ss_pred cccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh----------hhccCccEEEeecCcccccc
Q 041082 197 LQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE----------QSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~----------~~~~~l~~l~l~~n~l~~~~ 266 (639)
+++|++++ +|.. .++|++|++++|.+++.+ .+ ..+.+++.+. ....+++.|++++|.+. .+
T Consensus 160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~---~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-EL---QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CC---TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SC
T ss_pred CCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cc---cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cc
Confidence 99998886 3443 357888888888887753 22 2222222221 22347888999998888 45
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc--cCCccc--
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG--SIPTCF-- 342 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~-- 342 (639)
| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|.. +++|+.|++++|.+++ ..|..+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred c-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCE
Confidence 6 47888899999999998885 4432 3677888888888776 3332 3566777777776665 222211
Q ss_pred -----------cCC-CCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 343 -----------GNQ-TSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 343 -----------~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
..+ ++|++|++++|++.+ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|+++++.
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCC
Confidence 122 478889999998887 4443 5789999999999874 565 4788999999999998843
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.8e-32 Score=292.48 Aligned_cols=296 Identities=28% Similarity=0.390 Sum_probs=259.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..| ++++++|++|+|++|.+.+..| +..+++|++|++++|.+.+. | .++.+++|++|++
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeec
Confidence 478999999999987655 9999999999999999996533 99999999999999998864 4 5999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
+ |.+.+.. .+.++++|++|++++|.++.+ .+++|+.|++++|++++..| +..+++|+.|++++|.+.+.
T Consensus 164 ~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 164 G-NQVTDLK--PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp E-ESCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred C-CcccCch--hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--
Confidence 7 5665443 389999999999999999875 37899999999999998766 67799999999999999875
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
..+..+++|+.|++++|.+++.++ +.. ..+|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~-------~~~-------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP-------LSG-------LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-------GTT-------CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred hhhhcCCCCCEEECCCCccccchh-------hhc-------CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 358899999999999999987542 112 3478999999999987554 889999999999999999
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+..| +.
T Consensus 301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence 7655 7889999999999999998776 78899999999999999975 478899999999999999999887 88
Q ss_pred cCCCCcEEEcccCCCCC
Q 041082 368 NLKDILYLNLSSNFFIS 384 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~ 384 (639)
.+++|+.|++++|.+++
T Consensus 373 ~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeccCCcccC
Confidence 99999999999999987
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-32 Score=291.78 Aligned_cols=306 Identities=19% Similarity=0.206 Sum_probs=258.8
Q ss_pred ccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCcccc
Q 041082 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145 (639)
Q Consensus 66 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 145 (639)
+..+..++++++|++|++++|.+++ +| .+..+++|++|++++|++++. | ++.+++|++|+|++|++++. | +.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3445567889999999999999996 46 799999999999999999885 4 89999999999999999975 3 89
Q ss_pred CCCCCCEEecCCCCCCCCC---CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEcc
Q 041082 146 NLSSLSDLDLSHNNLTDVQ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222 (639)
Q Consensus 146 ~l~~L~~L~Ls~N~l~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 222 (639)
++++|++|++++|.++++. +++|+.|++++|++++. + +..+++|+.|++++|...+.+ .++.+++|++|+++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 9999999999999999864 67999999999999984 3 788999999999999766655 48899999999999
Q ss_pred CCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcE
Q 041082 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL 302 (639)
Q Consensus 223 ~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 302 (639)
+|++++.+ +.. ..+++.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.
T Consensus 179 ~n~l~~l~--------l~~-------l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 179 FNKITELD--------VSQ-------NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp SSCCCCCC--------CTT-------CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred CCccceec--------ccc-------CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 99998753 112 24788999999999985 47889999999999999998 56 788999999
Q ss_pred EEccCCcCCCCCchhhcCCC-------CCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh--------hh
Q 041082 303 LSFVDNKLEGPIPYEFCRLA-------SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST--------LW 367 (639)
Q Consensus 303 L~l~~N~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--------~~ 367 (639)
|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. +.
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99999999987665554444 45666667776666666 567899999999999987776643 45
Q ss_pred cCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 368 NLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
.+++|++|++++|++++. .+..++.|+.||+++|+|+++.
T Consensus 316 ~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCT
T ss_pred hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCcc
Confidence 567899999999999884 3889999999999999998853
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-32 Score=290.40 Aligned_cols=304 Identities=20% Similarity=0.200 Sum_probs=265.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..++.|+++++.++...+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..|..|+++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 35778999999988655556889999999999999999888889999999999999999999999999999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
++|+++...+..|.++++|++|++++|.++++ .+++|+.|++++|++++.. +..+++|+.|++++|.+.+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence 99999966666679999999999999999875 3689999999999998652 55678999999999998754
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCC
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 285 (639)
...++|+.|++++|.++..+.. ...+++.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred -----CCCCcceEEECCCCeeeecccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc
Confidence 3456899999999999865321 124789999999999874 578899999999999999
Q ss_pred CCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh
Q 041082 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365 (639)
Q Consensus 286 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 365 (639)
+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++...
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--- 334 (390)
T 3o6n_A 260 LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--- 334 (390)
T ss_dssp CCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---
T ss_pred CCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---
Confidence 999889999999999999999999986 4666778999999999999998 46667888999999999999998763
Q ss_pred hhcCCCCcEEEcccCCCCCC
Q 041082 366 LWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 366 ~~~l~~L~~L~ls~N~l~~~ 385 (639)
+..+++|+.|++++|++...
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred chhhccCCEEEcCCCCccch
Confidence 66788999999999998653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.4e-33 Score=307.81 Aligned_cols=326 Identities=19% Similarity=0.197 Sum_probs=279.1
Q ss_pred cccCCCCCCCCcC----ccceecCC------C----------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC
Q 041082 29 LAKNWNTSSTVCH----WTGVSCDV------R----------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88 (639)
Q Consensus 29 l~~~w~~~~~~c~----w~gv~c~~------~----------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l 88 (639)
+++ |.++.+||. |.++.|+. . -..++.++++++.++...+..|+++++|++|+|++|.+
T Consensus 9 l~~-~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 9 VKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp --C-CCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred ccC-CCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 455 877666663 66655442 1 02467899999999876666788999999999999999
Q ss_pred CccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-----
Q 041082 89 SGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----- 163 (639)
Q Consensus 89 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----- 163 (639)
++..|..|..+++|+.|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.++++
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 998888999999999999999999999999999999999999999999977777789999999999999999875
Q ss_pred -CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCC
Q 041082 164 -QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNC 242 (639)
Q Consensus 164 -~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l 242 (639)
.+++|+.|+|++|.+++.. +..+++|+.|++++|.+.+. ...++|+.|++++|.++..++..
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--------- 230 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--------- 230 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---------
T ss_pred hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---------
Confidence 3689999999999998753 45678999999999998764 34578999999999998653321
Q ss_pred cchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCC
Q 041082 243 KYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322 (639)
Q Consensus 243 ~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 322 (639)
..+|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++ +|..+..++
T Consensus 231 ------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 231 ------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 2478999999999997 4778999999999999999999999999999999999999999987 566778899
Q ss_pred CCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCC
Q 041082 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 323 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
+|+.|+|++|.++ .+|..+..+++|++|++++|.+.+.. +..++.|+.|++++|++.+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9999999999999 57778889999999999999998864 56778999999999998754
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.4e-31 Score=275.96 Aligned_cols=287 Identities=21% Similarity=0.264 Sum_probs=179.7
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+|++|
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 34556666665 4565554 57888899888888777777888888888888888888877888888888888888888
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcc--cCccccCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD--LIPNTFGN 212 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~ 212 (639)
+++ .+|..+. + +|++|++++|++++..+..+..+++|+.|++++|.+.. ..+..|..
T Consensus 111 ~l~-~l~~~~~--~------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 111 QLK-ELPEKMP--K------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp CCS-BCCSSCC--T------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred cCC-ccChhhc--c------------------cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 887 3444332 3 45555555556655666677888888888888888853 66777888
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+++|++|++++|.++..+... .++|+.|++++|.+++..|.
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~---------------------------------------~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGL---------------------------------------PPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSC---------------------------------------CTTCSEEECTTSCCCEECTG
T ss_pred CCCcCEEECCCCccccCCccc---------------------------------------cccCCEEECCCCcCCccCHH
Confidence 889999999888887643211 02344444444444444444
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc----
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN---- 368 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~---- 368 (639)
.+..+++|+.|++++|++++..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|+++++.+..|..
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 4444455555555555554444444555555555555555554 34444555555555555555555544444432
Q ss_pred --CCCCcEEEcccCCCCC--CCccccccccccccccccCCC
Q 041082 369 --LKDILYLNLSSNFFIS--PLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 369 --l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~l~ls~N~ 405 (639)
...+..+++++|++.. ..|..+..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2455666666666542 345566666667777776663
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.5e-32 Score=279.32 Aligned_cols=286 Identities=20% Similarity=0.243 Sum_probs=176.0
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|+.|++++|.+.+..|..|+++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 44566666665 4555553 56777777777777666666777777777777777776666666777777777777777
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc--ccCccccCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF--DLIPNTFGN 212 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~ 212 (639)
+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+. +..|..|..
T Consensus 113 ~l~-~l~~~~~--------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 113 HLV-EIPPNLP--------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp CCC-SCCSSCC--------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred cCC-ccCcccc--------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 666 3333322 34555555555665555666778888888888888885 366777777
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+ +|++|++++|.+++.+... .++|+.|++++|.+++..+.
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~---------------------------------------~~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL---------------------------------------PETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS---------------------------------------CSSCSCCBCCSSCCCCCCTT
T ss_pred C-ccCEEECcCCCCCccCccc---------------------------------------cCCCCEEECCCCcCCccCHH
Confidence 7 8888888888887643211 03455555555555555445
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc----
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN---- 368 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~---- 368 (639)
.+..+++|+.|++++|++.+..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 5555555555555555555555555555556666666666555 44555555666666666666665555554433
Q ss_pred --CCCCcEEEcccCCCC--CCCccccccccccccccccCCC
Q 041082 369 --LKDILYLNLSSNFFI--SPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 369 --l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
...|+.+++++|++. ...|..+..++.|+.+++++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 244566666666655 4455566666666666666653
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.3e-31 Score=274.43 Aligned_cols=277 Identities=25% Similarity=0.356 Sum_probs=202.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..+ +..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEEC
Confidence 478999999999986433 9999999999999999985 44 69999999999999999986544 899999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|.....++ .+..+++|++|++++|.++.+. +++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch
Confidence 9997665554 4889999999999998887642 5566666666666654332 4555666666666666655433
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
+..+++|++|++++|.+++. .+ +..+++|+.|++++|.++
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~------------------------------------~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDL------------------------------------SP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCC------------------------------------GG--GTTCTTCCEEECCSSCCC
T ss_pred --hhcCCcCCEEEccCCccCCC------------------------------------cc--hhcCCCCCEEECCCCccC
Confidence 55556666666666555432 22 556667777777777776
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| +.
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 53 3466677777777777777654 346777777888888887777777777777788888888888777666 66
Q ss_pred cCCCCcEEEcccCCCC
Q 041082 368 NLKDILYLNLSSNFFI 383 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~ 383 (639)
.+++|++|++++|.++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 7778888888887763
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.2e-32 Score=281.54 Aligned_cols=249 Identities=27% Similarity=0.381 Sum_probs=166.3
Q ss_pred CCCCEEeccCCcCCc--cCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 76 SSLQTLDLSFNWFSG--SIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
.++++|+|++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999998 8999999999999999995 9999999999999999999999999999888888887666555
Q ss_pred EecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCC-CCCEEEccCCCCCCCCC
Q 041082 153 LDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI-NLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 153 L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~ 231 (639)
|+|++ |++++.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|.+++
T Consensus 130 L~Ls~------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--- 188 (313)
T 1ogq_A 130 LDFSY------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--- 188 (313)
T ss_dssp EECCS------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---
T ss_pred EeCCC------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---
Confidence 55544 444456677777777777777777777766676666655 55555555554432
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
.+|..+..++ |+.|++++|.+++..|..+..+++|+.|++++|+++
T Consensus 189 ---------------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 189 ---------------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ---------------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ---------------------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 2333344443 555666665555555555555555555555555554
Q ss_pred CCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccc
Q 041082 312 GPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG 391 (639)
Q Consensus 312 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 391 (639)
+.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. .
T Consensus 235 ~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 235 FDLGK-------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp CBGGG-------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred eecCc-------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 44333 344455555555555555555555555555555555555555555544 5
Q ss_pred cccccccccccCCC
Q 041082 392 NLKVLVGIDLSMNN 405 (639)
Q Consensus 392 ~l~~L~~l~ls~N~ 405 (639)
.++.|+.+++++|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 55666666666665
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-30 Score=268.62 Aligned_cols=286 Identities=21% Similarity=0.259 Sum_probs=190.4
Q ss_pred CCCCcCccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 36 SSTVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..+.|.|..+.|.... .+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 3456889999997531 3689999999999988888999999999999999999998899999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFI 186 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~ 186 (639)
+++|.+. .+|..+. ++|++|+|++|++++..+..|.++++|+.|++++|.++.. +..|..+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~ 169 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------GFEPGAF 169 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------GSCTTSS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------CCCcccc
Confidence 9999998 5666555 8999999999999988777899999999999988887631 1223333
Q ss_pred cCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccccc
Q 041082 187 FNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 187 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~ 266 (639)
..+ +|+.|++++|.+.+. |..+. ++|++|++++|.+++.+
T Consensus 170 ~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~------------------------------------ 209 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIE------------------------------------ 209 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCC------------------------------------
T ss_pred cCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccC------------------------------------
Confidence 333 455555555555442 22221 45555555555544321
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccC--
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN-- 344 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 344 (639)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..|..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 112233444455555555555444444555555555555555554 34444555555555555555555554444433
Q ss_pred ----CCCCCEEeCCCCcCc--ccchhhhhcCCCCcEEEcccCC
Q 041082 345 ----QTSLRILSLDSNKLI--SIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 345 ----l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
..+|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245677777777766 5666677777777777777664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=264.05 Aligned_cols=286 Identities=23% Similarity=0.261 Sum_probs=195.7
Q ss_pred CCCcCccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeec
Q 041082 37 STVCHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYF 107 (639)
Q Consensus 37 ~~~c~w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 107 (639)
.+.|.|+.+.|+.. ...++.|++++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45678999999742 236889999999999887888999999999999999999888999999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCcccc
Q 041082 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIF 187 (639)
Q Consensus 108 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~ 187 (639)
++|.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++.. +..+..+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~ 168 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------GIENGAFQ 168 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------GBCTTGGG
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------CcChhhcc
Confidence 999997 4666554 7999999999999988888899999999999988887641 13344455
Q ss_pred CCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccc
Q 041082 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL 267 (639)
Q Consensus 188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~ 267 (639)
.+++|+.|++++|.+... |..+ .++|++|++++|.+++.. +
T Consensus 169 ~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~------------------------------------~ 209 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVD------------------------------------A 209 (330)
T ss_dssp GCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEEC------------------------------------T
T ss_pred CCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccC------------------------------------H
Confidence 555666666666665543 2222 155666666665554321 2
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccC---
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN--- 344 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--- 344 (639)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 23334445555555555555444445555555555555555555 44445555556666666666665554444432
Q ss_pred ---CCCCCEEeCCCCcCcc--cchhhhhcCCCCcEEEcccCC
Q 041082 345 ---QTSLRILSLDSNKLIS--IIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 345 ---l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~ls~N~ 381 (639)
..+++.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2567777777777753 566777777788888887774
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.3e-29 Score=272.05 Aligned_cols=304 Identities=24% Similarity=0.269 Sum_probs=229.3
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++.+ +| +|+++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 467888888888887 6643 3788899999998875 4432 2689999999999987 77 5999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|++++ +|..+ .+|++|++++|.++++ .+++|+.|++++|++++ +|... ++|+.|++++|.+. .+|
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc
Confidence 9999986 55543 5899999999999875 37899999999999986 45432 58999999999998 456
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
. ++.+++|++|++++|++++.+.. ..+++.|++++|.+.+ +|.. +++|+.|++++|.++
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~l~~~----------------~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKTLPDL----------------PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSSCCSC----------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred c-cCCCCCCCEEECCCCcCCccccc----------------ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 4 89999999999999999875421 2478899999999887 4443 478999999999998
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCC-CCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL-ASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 366 (639)
+. |.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|++|++++|+++++ |.
T Consensus 291 ~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~-- 354 (454)
T 1jl5_A 291 GL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE-- 354 (454)
T ss_dssp EE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC--
T ss_pred cc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc--
Confidence 62 211 26899999999998862 2 23 589999999999986 5554 57899999999999864 44
Q ss_pred hcCCCCcEEEcccCCCCC--CCccccccc-------------cccccccccCCCCCCcCcc
Q 041082 367 WNLKDILYLNLSSNFFIS--PLPLEIGNL-------------KVLVGIDLSMNNFSGFGSI 412 (639)
Q Consensus 367 ~~l~~L~~L~ls~N~l~~--~~p~~~~~l-------------~~L~~l~ls~N~l~g~g~v 412 (639)
.+++|++|++++|++++ .+|..+..+ ++|+.||+++|++++++.+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i 414 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI 414 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc
Confidence 47889999999999998 788888887 7899999999999986543
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.6e-30 Score=266.09 Aligned_cols=281 Identities=22% Similarity=0.243 Sum_probs=185.3
Q ss_pred CCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC
Q 041082 33 WNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112 (639)
Q Consensus 33 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 112 (639)
|......|.|.|+ |+. ++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|+.|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG----------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EEC----------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-eeC----------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 6666788999887 653 456665 4676665 4899999999999977777899999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCc-cCccCCc
Q 041082 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNN-FSGAIPH 184 (639)
Q Consensus 113 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~-l~~~~p~ 184 (639)
.+..|..|.++++|++|+|++|++++..+..+.++++|++|+|++|.++.+. +++|++|++++|+ +.+..|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 9888888999999999999999998766666888888888888888876532 4455666666552 4444455
Q ss_pred cccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccc
Q 041082 185 FIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264 (639)
Q Consensus 185 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~ 264 (639)
.+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.++..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----------------------------------- 213 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL----------------------------------- 213 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-----------------------------------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-----------------------------------
Confidence 555566666666666666655555566666666666655554321
Q ss_pred ccchhhcCCCCCCEEECCCCCCCcccccccc---CCcCCcEEEccCCcCCC----CCchhhcCCCCCcEEECCCCcCccc
Q 041082 265 GILEEISNLTNLTAIYLAGNKLNGSIPITLC---KLQKLQLLSFVDNKLEG----PIPYEFCRLASLYELDLSGNKLSGS 337 (639)
Q Consensus 265 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 337 (639)
....+..+++|+.|++++|.+++..+..+. ....++.++++++.+.+ .+|..+..+++|+.|++++|+++..
T Consensus 214 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 214 -LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp -HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred -hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 111223355566666666665544333221 23455666666666554 2455666777777777777777644
Q ss_pred CCccccCCCCCCEEeCCCCcCcccch
Q 041082 338 IPTCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 338 ~p~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
.+..|..+++|++|++++|.+.+..|
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 33345667777777777777666544
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.3e-33 Score=299.32 Aligned_cols=351 Identities=20% Similarity=0.171 Sum_probs=278.1
Q ss_pred CcEEEEEeCCCCCcccCCcC-CCCCCCCCEEeccCCcCCc----cCCccccCCcccceeeccCCcCCCCCCccc-cCCC-
Q 041082 52 YRVTTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTLFGEIPEEL-GNLA- 124 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~- 124 (639)
.+++.|+|+++.++...... +..+++|++|+|++|.+.+ .+|..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 36899999999987544333 7788999999999999985 467788889999999999999876555443 3455
Q ss_pred ---CCcEEecccccCcc----ccCccccCCCCCCEEecCCCCCCCC-----------CCCCccEEEccCCccCcc----C
Q 041082 125 ---ELETLWLQNNFLTG----TIHSSIFNLSSLSDLDLSHNNLTDV-----------QIPNLENLLLWGNNFSGA----I 182 (639)
Q Consensus 125 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~-----------~l~~L~~L~L~~N~l~~~----~ 182 (639)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++. ..++|++|+|++|++++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 5688899999999999999998752 245799999999999874 3
Q ss_pred CccccCCCCCcEEEcccCCCcccCccccC-----CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEe
Q 041082 183 PHFIFNASKLSILELQKNSFFDLIPNTFG-----NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSM 257 (639)
Q Consensus 183 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l 257 (639)
+..+..+++|+.|++++|.+....+..+. ..++|++|++++|.++..... .....+ ....+|+.|++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l-------~~~~~L~~L~L 234 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIV-------ASKASLRELAL 234 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHH-------HHCTTCCEEEC
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHH-------HhCCCccEEec
Confidence 56667789999999999998765444443 367999999999988753100 011111 12457899999
Q ss_pred ecCccccccch-----hhcCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcCCCCCchhhcC-----CCC
Q 041082 258 FNCNISGGILE-----EISNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLEGPIPYEFCR-----LAS 323 (639)
Q Consensus 258 ~~n~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----l~~ 323 (639)
++|.+.+.... .+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 99998764322 223588999999999999864 5677778999999999999987654444433 369
Q ss_pred CcEEECCCCcCccc----CCccccCCCCCCEEeCCCCcCcccchhhhhc-----CCCCcEEEcccCCCCC----CCcccc
Q 041082 324 LYELDLSGNKLSGS----IPTCFGNQTSLRILSLDSNKLISIIPSTLWN-----LKDILYLNLSSNFFIS----PLPLEI 390 (639)
Q Consensus 324 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~ 390 (639)
|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.++. .+|..+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 99999999999865 4666778899999999999998876665543 6799999999999986 778888
Q ss_pred ccccccccccccCCCCCCcC
Q 041082 391 GNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 391 ~~l~~L~~l~ls~N~l~g~g 410 (639)
..+++|+.||+++|+|++.|
T Consensus 395 ~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHCCCCCEEECCSSSCCHHH
T ss_pred HhCCCccEEECCCCCCCHHH
Confidence 89999999999999998654
No 50
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.96 E-value=2.1e-30 Score=260.94 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=150.0
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.+. ++..||||++........+.|..|+++++. +|||||++|+|.
T Consensus 24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~ 103 (299)
T 4asz_A 24 GAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLN 103 (299)
T ss_dssp --CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred CCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHH
Confidence 469999999874 367899999987666666789999988543 799999999999
Q ss_pred hccccC------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 461 KCLYSS------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 461 ~~l~~~------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++|+.. ...++|.++.+|+.|||+||+||| +.+|+||||||+|||+++++.+||+|||+|+....
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 180 (299)
T 4asz_A 104 KFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYS 180 (299)
T ss_dssp HHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTG
T ss_pred HHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEECCcccceecCC
Confidence 999642 246999999999999999999999 66899999999999999999999999999997654
Q ss_pred cCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecc
Q 041082 529 EDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVN 581 (639)
Q Consensus 529 ~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 581 (639)
..... .. ...+.++||| | | |+.|..+. ....+...+... ..
T Consensus 181 ~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~--~~~~~~~~i~~~---~~------- 248 (299)
T 4asz_A 181 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL--SNNEVIECITQG---RV------- 248 (299)
T ss_dssp GGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CHHHHHHHHHHT---CC-------
T ss_pred CCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHcC---CC-------
Confidence 33210 00 0112378888 6 6 78777532 111222222211 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+..+...+.+++.+||+.+|++||||.||++.|+++.++
T Consensus 249 --------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 249 --------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 011223445678899999999999999999999999988654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.6e-29 Score=254.31 Aligned_cols=288 Identities=22% Similarity=0.243 Sum_probs=205.1
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC--
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG-- 114 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-- 114 (639)
.+.|.|.+|.|+.. +++ .+|..+. ++|++|+|++|.++...+..|.++++|+.|++++|.+..
T Consensus 4 ~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 35678888888642 343 4565554 689999999999985544557899999999999998873
Q ss_pred CCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCC-ccccCCCCCc
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP-HFIFNASKLS 193 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~ 193 (639)
..|..+..+++|++|+|++|.++. +|..+..+++|++|++++|.++++ .+ ..+..+++|+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~------------------~~~~~~~~l~~L~ 129 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM------------------SEFSVFLSLRNLI 129 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESS------------------TTTTTTTTCTTCC
T ss_pred CcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccc------------------ccchhhhhccCCC
Confidence 336777788999999999999874 566677877777777777665532 22 3566677788
Q ss_pred EEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCC
Q 041082 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL 273 (639)
Q Consensus 194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l 273 (639)
.|++++|.+.+..+..|..+++|++|++++|.+++. ..|..+..+
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------------------~~~~~~~~l 174 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------------------------------FLPDIFTEL 174 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-----------------------------------EECSCCTTC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccc-----------------------------------cchhHHhhC
Confidence 888888887777777777777777777777765420 124445667
Q ss_pred CCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCC-CCCEEe
Q 041082 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT-SLRILS 352 (639)
Q Consensus 274 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ 352 (639)
++|++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|..+..++ +|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 7788888888888777777777888888888888888877777788888888888888888888888888774 888888
Q ss_pred CCCCcCcccchh--hhhcCCCCcEEEcccCCCCCCCccccccc
Q 041082 353 LDSNKLISIIPS--TLWNLKDILYLNLSSNFFISPLPLEIGNL 393 (639)
Q Consensus 353 l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 393 (639)
+++|.+.+..+. ....+...+.+.+..+.+....|..+.+.
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 888888764321 11112223334444555555556555543
No 52
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.96 E-value=4e-30 Score=262.50 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=144.0
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.+. ++..||||++........+.|..|+++++. +|||||++|+|.
T Consensus 52 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~ 131 (329)
T 4aoj_A 52 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLN 131 (329)
T ss_dssp CSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred CCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHH
Confidence 569999999875 368899999987666666789999988543 799999999999
Q ss_pred hccccC--------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 461 KCLYSS--------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 461 ~~l~~~--------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++++.. ...++|.++++|+.+||+||+||| ..+|+||||||+|||+|+++.+||+|||+|+.+
T Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~ 208 (329)
T 4aoj_A 132 RFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208 (329)
T ss_dssp HHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-----
T ss_pred HHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcEEEcccccceec
Confidence 998652 135899999999999999999999 678999999999999999999999999999976
Q ss_pred cccCCC--cccc---------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeee
Q 041082 527 LKEDQS--FTQN---------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579 (639)
Q Consensus 527 ~~~~~~--~~~~---------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d 579 (639)
...... .+.. ..+.++||| | | |+.|..+. ....+.+.+....
T Consensus 209 ~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~--~~~~~~~~i~~g~--------- 277 (329)
T 4aoj_A 209 YSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL--SNTEAIDCITQGR--------- 277 (329)
T ss_dssp -----------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS--CHHHHHHHHHHTC---------
T ss_pred cCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC--CHHHHHHHHHcCC---------
Confidence 543211 0000 122378888 6 6 77776532 1112222222110
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.+.+..+...+.+|+.+||+.+|++||||.||+++|+.+.+.
T Consensus 278 ---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 278 ---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 0111223445678899999999999999999999999988653
No 53
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.96 E-value=4.2e-30 Score=259.82 Aligned_cols=199 Identities=23% Similarity=0.411 Sum_probs=145.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.+||.||+|.+. .+..||||++..... ...+.|..|+.+++. +|||||++|+|
T Consensus 37 G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L 116 (308)
T 4gt4_A 37 DRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDL 116 (308)
T ss_dssp CSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBH
T ss_pred CCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcH
Confidence 569999999874 457899999865432 234678888888543 79999999999
Q ss_pred hhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 460 EKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 460 ~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.++|+.. ...++|.++.+|+.+||+||+||| +.+|+||||||+|||+|+++.+||+|||+|+
T Consensus 117 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar 193 (308)
T 4gt4_A 117 HEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKISDLGLFR 193 (308)
T ss_dssp HHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCSCCBC
T ss_pred HHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCCEEECCcccce
Confidence 9998542 135899999999999999999999 6679999999999999999999999999999
Q ss_pred cccccCCC--cccc---------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCccee
Q 041082 525 LLLKEDQS--FTQN---------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEV 577 (639)
Q Consensus 525 ~~~~~~~~--~~~~---------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (639)
.+...+.. .+.. ..+.++||| | | |+.|+.+. ....+.+.+.. ...
T Consensus 194 ~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~--~~~~~~~~i~~---~~~--- 265 (308)
T 4gt4_A 194 EVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY--SNQDVVEMIRN---RQV--- 265 (308)
T ss_dssp GGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC--CHHHHHHHHHT---TCC---
T ss_pred eccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc---CCC---
Confidence 77543321 0111 112378888 6 6 67776532 11222222221 110
Q ss_pred eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 578 VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 578 ~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+.+|...+.+|+.+||+.+|++||||.||+++|+.+
T Consensus 266 ------------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 266 ------------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp ------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ------------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 112234556688899999999999999999999999854
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.4e-28 Score=271.96 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=210.5
Q ss_pred ccccCCCCCCCCcCccceec------CCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 28 FLAKNWNTSSTVCHWTGVSC------DVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 28 ~l~~~w~~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
..+. |....++|.|.|..| .+....++.|++++++++ .+|..+. ++|++|+|++|.++ .+|. .+++
T Consensus 11 ~w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 11 VWSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 4455 887888999976422 211235889999999998 6787776 89999999999998 5776 5789
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC--CCCccEEEccCCccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ--IPNLENLLLWGNNFS 179 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--l~~L~~L~L~~N~l~ 179 (639)
|+.|+|++|++++ +|. .+++|++|+|++|++++. |. .+++|+.|++++|.|+.++ +++|++|+|++|+++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC
Confidence 9999999999875 555 779999999999999864 43 6788999999999998864 578999999999888
Q ss_pred ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeec
Q 041082 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN 259 (639)
Q Consensus 180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~ 259 (639)
+ +|. .+++|+.|++++|.++++ | ..+++|+.|++++|.+++.+.. ..+|+.|++++
T Consensus 155 ~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~----------------~~~L~~L~L~~ 210 (622)
T 3g06_A 155 S-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPTL----------------PSELYKLWAYN 210 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCS
T ss_pred C-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCCc----------------cchhhEEECcC
Confidence 5 343 246788999999988774 3 4568888999998888764321 13566777777
Q ss_pred CccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC
Q 041082 260 CNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339 (639)
Q Consensus 260 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 339 (639)
|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|+++. +|. .+++|+.|+|++|.++ .+|
T Consensus 211 N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 211 NRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp SCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC
T ss_pred Ccccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC
Confidence 77664 332 23567777777777764 34 344667777777777664 333 4566777777777776 456
Q ss_pred ccccCCCCCCEEeCCCCcCcccchhhhhcC
Q 041082 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNL 369 (639)
Q Consensus 340 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 369 (639)
..|..+++|+.|++++|.+++..|..+..+
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 666677777777777777776666655443
No 55
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.96 E-value=6.4e-30 Score=257.39 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=147.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.+.+ .+|||++.... ....+.|..|+.+++. +|||||++|+|.++|+.
T Consensus 47 G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gGsL~~~l~~ 124 (307)
T 3omv_A 47 GSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHV 124 (307)
T ss_dssp CSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHHHHHT
T ss_pred CCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCCCHHHHHhh
Confidence 5699999998764 58999886433 3345678888888543 79999999999999987
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c-----c----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-----T---- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-----~---- 534 (639)
....++|.++.+|+.|||+||+||| +.+|+||||||+|||+|+++.+||+|||+|+........ . +
T Consensus 125 ~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ym 201 (307)
T 3omv_A 125 QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWM 201 (307)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCcc
Confidence 6667999999999999999999999 568999999999999999999999999999876532211 0 0
Q ss_pred --cc-------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 --QN-------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 --~~-------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.. ..+.++||| | ||+.|+.+.- ....+...+... ...|.+. ..+.++
T Consensus 202 APE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~-~~~~~~~~~~~~-------~~~p~~~-------~~~~~~ 266 (307)
T 3omv_A 202 APEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN-NRDQIIFMVGRG-------YASPDLS-------KLYKNC 266 (307)
T ss_dssp CHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHTT-------CCCCCST-------TSCTTS
T ss_pred CHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC-hHHHHHHHHhcC-------CCCCCcc-------cccccc
Confidence 00 113368888 6 8888875321 111111111111 1111111 112234
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+.+++.+||+.+|++||||.||+++|+.++..+
T Consensus 267 ~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 267 PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999886543
No 56
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.96 E-value=3.1e-29 Score=254.03 Aligned_cols=212 Identities=22% Similarity=0.258 Sum_probs=145.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH------------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM------------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------~~Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.+ .|..||||+++...... ..+..|+..+ ..+|||||++|+|.++
T Consensus 14 G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~-~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~ 91 (303)
T 3hmm_A 14 GRFGEVWRGKW-RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY 91 (303)
T ss_dssp CSSSEEEEEEE-TTEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEE-CCEEEEEEEECccchhh-HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHH
Confidence 57999999998 48899999997543221 1222333321 1379999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
++. ..++|..+.+|+.++|+||+|||+.+ .++|+||||||+|||+|.++++||+|||+|+........
T Consensus 92 l~~--~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~ 169 (303)
T 3hmm_A 92 LNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAP 169 (303)
T ss_dssp HHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-
T ss_pred HHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeec
Confidence 975 35899999999999999999999652 569999999999999999999999999999876543211
Q ss_pred ----cc------cc----------ccccccccc--c-------CCCCCCCccCC----------CccchHHHHHhhCCCC
Q 041082 533 ----FT------QN----------TNTCHHRIY--G-------TRRNPQMNFFS----------GEMTLKSWVNDLLPIS 573 (639)
Q Consensus 533 ----~~------~~----------~~~~~~dvy--G-------tg~~p~~~~~~----------~~~~l~~~~~~~~~~~ 573 (639)
.+ .. ..+.++||| | ||+.|...... ......++.......
T Consensus 170 ~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~- 248 (303)
T 3hmm_A 170 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ- 248 (303)
T ss_dssp ----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS-
T ss_pred ccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcc-
Confidence 00 00 012267888 6 66655432110 111122222111111
Q ss_pred cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 574 VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 574 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.++|.+... ....++...+.+|+.+||+.+|++||||.||+++|+++.+.
T Consensus 249 ---~~rp~~p~~-----~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 249 ---KLRPNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp ---CCCCCCCGG-----GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---cCCCCCCcc-----ccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 122222111 11235677889999999999999999999999999988653
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.7e-28 Score=260.12 Aligned_cols=244 Identities=24% Similarity=0.218 Sum_probs=157.7
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
++.++.+++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|++
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 445555555 4565554 5788888888888887788888888888888888888877778888888888888888888
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCcccCccccCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDLIPNTFGNLIN 215 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~ 215 (639)
++..+..|.++++|++|+|++|.++ ...+..|.++++|+.|++++| .+....+..|..+++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE------------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred CccChhhhcccCCCCEEECCCCCcc------------------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 8666666777666666666665554 233445666677777777763 344444445667777
Q ss_pred CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccccc
Q 041082 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295 (639)
Q Consensus 216 L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 295 (639)
|++|+|++|.+++.+ .+..+++|+.|+|++|.+++..|..|.
T Consensus 198 L~~L~L~~n~l~~~~--------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMP--------------------------------------NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp CCEEECTTSCCSSCC--------------------------------------CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred CCEEECCCCcccccc--------------------------------------cccccccccEEECcCCcCcccCccccc
Confidence 777777777665421 123345566666666666655555555
Q ss_pred CCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 041082 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359 (639)
Q Consensus 296 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 359 (639)
.+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5556666666666555555555555556666666666655555555555555555555555543
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.7e-31 Score=284.49 Aligned_cols=326 Identities=20% Similarity=0.249 Sum_probs=258.0
Q ss_pred cEEEEEeCCCCCcc----cCCcCCCCCCCCCEEeccCCcCCccCCcccc-CCc----ccceeeccCCcCCC----CCCcc
Q 041082 53 RVTTLNISGLSLTS----TIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMS----SLLSIYFNNNTLFG----EIPEE 119 (639)
Q Consensus 53 ~v~~L~L~~~~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~----~L~~L~L~~N~l~~----~~p~~ 119 (639)
+++.|+++++.++. .++..+..+++|++|+|++|.+.+..+..+. .++ +|++|++++|.+.. .+|..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 67899999999874 4567788899999999999999865444443 355 69999999999984 56889
Q ss_pred ccCCCCCcEEecccccCccccCcccc-----CCCCCCEEecCCCCCCCC----------CCCCccEEEccCCccCccCCc
Q 041082 120 LGNLAELETLWLQNNFLTGTIHSSIF-----NLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNFSGAIPH 184 (639)
Q Consensus 120 ~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l~~~~p~ 184 (639)
+..+++|++|+|++|.+++..+..+. ..++|++|+|++|.+++. .+++|+.|++++|.++...+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 99999999999999999765444332 367899999999999873 258999999999998765444
Q ss_pred ccc-----CCCCCcEEEcccCCCccc----CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEE
Q 041082 185 FIF-----NASKLSILELQKNSFFDL----IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF 255 (639)
Q Consensus 185 ~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l 255 (639)
.+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.++...... .... +.....+++.|
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~------~~~~~~~L~~L 261 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE-LCPG------LLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-HHHH------HTSTTCCCCEE
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH-HHHH------HhcCCCCceEE
Confidence 443 366999999999999874 4667788999999999999886421000 0000 01123589999
Q ss_pred EeecCccccc----cchhhcCCCCCCEEECCCCCCCccccccccC-----CcCCcEEEccCCcCCCC----CchhhcCCC
Q 041082 256 SMFNCNISGG----ILEEISNLTNLTAIYLAGNKLNGSIPITLCK-----LQKLQLLSFVDNKLEGP----IPYEFCRLA 322 (639)
Q Consensus 256 ~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~~----~p~~~~~l~ 322 (639)
++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 9999999875 5677788999999999999997654444433 26999999999999865 466777889
Q ss_pred CCcEEECCCCcCcccCCccccC-----CCCCCEEeCCCCcCcc----cchhhhhcCCCCcEEEcccCCCCCC
Q 041082 323 SLYELDLSGNKLSGSIPTCFGN-----QTSLRILSLDSNKLIS----IIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 323 ~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
+|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++.+.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999999999998765544432 6799999999999986 7888899999999999999998654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=252.93 Aligned_cols=279 Identities=20% Similarity=0.196 Sum_probs=160.8
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
++.....++++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344456889999998 6787766 5899999999999988777899999999999999999988888899988888888
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEEccCCC-CCCCCCc
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNY-LTSSTPE 232 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 232 (639)
|++|.++.+ .+..+..+++|++|++++|.+.+..+ ..|..+++|++|++++|. ++..++.
T Consensus 107 Ls~n~l~~~------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 107 LSYNYLSNL------------------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CCSSCCSSC------------------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CCCCcCCcC------------------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 888777653 22335555666666666666655433 356666666666666653 3321110
Q ss_pred chhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 233 ~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
.+.+ ..+|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++
T Consensus 169 -----~~~~-------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 169 -----DFAG-------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp -----TTTT-------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred -----HccC-------CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 0000 0122333333333333334445555555556666555543222223345555555555555554
Q ss_pred CCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc----cchhhhhcCCCCcEEEcccCCCCCCCcc
Q 041082 313 PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS----IIPSTLWNLKDILYLNLSSNFFISPLPL 388 (639)
Q Consensus 313 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 388 (639)
..+..+.. ......++.++++++.+.+ .+|..+..+++|++|++++|+++. +|.
T Consensus 237 ~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~ 294 (353)
T 2z80_A 237 FHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPD 294 (353)
T ss_dssp CCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCT
T ss_pred cccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCH
Confidence 33322211 0122334444444444443 234445555555555555555542 333
Q ss_pred c-cccccccccccccCCCCCC
Q 041082 389 E-IGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 389 ~-~~~l~~L~~l~ls~N~l~g 408 (639)
. +..+++|+.|++++|++.+
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcCCCCCEEEeeCCCccC
Confidence 3 3555555555555555544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=252.73 Aligned_cols=245 Identities=23% Similarity=0.221 Sum_probs=170.4
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++.++.+++ .+|..+. +++++|+|++|.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556666676 5676665 689999999999998888899999999999999999988888889999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCcccCccccCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDLIPNTFGNLI 214 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~ 214 (639)
+++..+..|..+++|++|+|++|.++ ...+..|..+++|+.|++++| .+....+..|..++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIE------------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCC------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred CCeeCHhHhhccccCceeeCCCCccc------------------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 98777667877777777766666554 334455667777777777774 34444445677777
Q ss_pred CCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccc
Q 041082 215 NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL 294 (639)
Q Consensus 215 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 294 (639)
+|++|++++|.++..+ .+..+++|+.|+|++|.+++..|..|
T Consensus 186 ~L~~L~L~~n~l~~~~--------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIP--------------------------------------NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp SCCEEECTTSCCSSCC--------------------------------------CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ccCeecCCCCcCcccc--------------------------------------ccCCCcccCEEECCCCccCccChhhh
Confidence 7777777777665421 12344556666666666665555566
Q ss_pred cCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 041082 295 CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359 (639)
Q Consensus 295 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 359 (639)
..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 66666666666666666555555666666666666666666555555555666666666665543
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=244.11 Aligned_cols=249 Identities=24% Similarity=0.299 Sum_probs=188.1
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc--cCccccCCCCCCEEecC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT--IHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls 156 (639)
+.++.+++.++ .+|..+. ++|+.|++++|.+....+..|.++++|++|+|++|.++.. .|..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46788888877 5666554 5788888888888755555577888888888888887633 24555666666666666
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEEccCCCCCCCCCcchh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPELSF 235 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 235 (639)
+|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 140 (306)
T 2z66_A 87 FNGVI-------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------- 140 (306)
T ss_dssp SCSEE-------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------
T ss_pred CCccc-------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------
Confidence 55543 244556677888888888888876654 467777777777777766543
Q ss_pred hccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc-cccccccCCcCCcEEEccCCcCCCCC
Q 041082 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG-SIPITLCKLQKLQLLSFVDNKLEGPI 314 (639)
Q Consensus 236 ~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~ 314 (639)
..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..
T Consensus 141 -----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 141 -----------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp -----------------------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred -----------------------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 234456677889999999998876 57788888888999999999888887
Q ss_pred chhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCC-CCcEEEcccCCCCCC
Q 041082 315 PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK-DILYLNLSSNFFISP 385 (639)
Q Consensus 315 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~ 385 (639)
|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..++ +|++|++++|++.+.
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888888899999999988887777788888888888888888888888887774 888888888888664
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.8e-29 Score=254.19 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=141.2
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC-CCCCCcccc-------CCCCCcEEecccccCccccCcc
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL-FGEIPEELG-------NLAELETLWLQNNFLTGTIHSS 143 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~ 143 (639)
++..++|++|++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567788889999988 678777654 88889999888 456777666 7889999999999998888877
Q ss_pred c--cCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCC-----CCCcEEEcccCCCcccCccccCCCCCC
Q 041082 144 I--FNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA-----SKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 144 ~--~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
+ ..+++|++|+|++|.+++. |..+..+ ++|++|++++|++.+..|..|+.+++|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHHhcCCCccEEEccCCCCcch-------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 6 7777777777777766653 2222222 455555555555555544555555555
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhh--cCCCCCCEEECCCCCCCcc--cc-
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI--SNLTNLTAIYLAGNKLNGS--IP- 291 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~--~p- 291 (639)
++|++++|++.+.. . .+..+ ..+++|++|++++|.+++. ++
T Consensus 176 ~~L~Ls~N~l~~~~---~-------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 176 STLDLSDNPELGER---G-------------------------------LISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp CEEECCSCTTCHHH---H-------------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CEEECCCCCcCcch---H-------------------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 55555555443210 0 00111 2333444444444444311 11
Q ss_pred ccccCCcCCcEEEccCCcCCCCCc-hhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPIP-YEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK 370 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 370 (639)
..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 112233444444444444444332 22333455555555555555 3444433 4555555555555554 33 55555
Q ss_pred CCcEEEcccCCCCC
Q 041082 371 DILYLNLSSNFFIS 384 (639)
Q Consensus 371 ~L~~L~ls~N~l~~ 384 (639)
+|++|++++|++++
T Consensus 297 ~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 297 QVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECTTCTTTC
T ss_pred CCCEEeccCCCCCC
Confidence 55555555555543
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.1e-27 Score=242.85 Aligned_cols=281 Identities=22% Similarity=0.265 Sum_probs=165.0
Q ss_pred CCCCcccccCCCC--CCCCcCccceecCCCC--CcEEEEEeCCCCCcccCCcCC--CCCCCCCEEeccCCcCCccCCccc
Q 041082 23 DDPTNFLAKNWNT--SSTVCHWTGVSCDVRS--YRVTTLNISGLSLTSTIPSEL--GNLSSLQTLDLSFNWFSGSIPSSI 96 (639)
Q Consensus 23 ~~~~~~l~~~w~~--~~~~c~w~gv~c~~~~--~~v~~L~L~~~~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~ 96 (639)
.|+..++.. |.. ..++|.|.++-|.... ..+. ...+.... .++..+ ...+++++|+|++|.+. .+|..+
T Consensus 26 ~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~-~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 26 RPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHH-HHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred chHHHHHHH-HHHhccCCchhhhhhhccccccccccc--ccCCcchh-hhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 345556666 865 3578998877763211 1110 00000000 111111 13467889999998888 778888
Q ss_pred cCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCC
Q 041082 97 FNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGN 176 (639)
Q Consensus 97 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N 176 (639)
+.+++|++|+|++|.+. .+|..|+++++|++|+|++|+++ .+|..+.++++|++|+|++|
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n------------------ 160 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC------------------ 160 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE------------------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC------------------
Confidence 88888888888888887 77888888888888888888887 56766666555544444433
Q ss_pred ccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEE
Q 041082 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFS 256 (639)
Q Consensus 177 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~ 256 (639)
++.+.+|..+.. . ..+..|+.+++|++|++++|.++.
T Consensus 161 ~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~---------------------------- 197 (328)
T 4fcg_A 161 PELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRS---------------------------- 197 (328)
T ss_dssp TTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCC----------------------------
T ss_pred CCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCc----------------------------
Confidence 333344443221 0 011223445555555555554432
Q ss_pred eecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc
Q 041082 257 MFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336 (639)
Q Consensus 257 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 336 (639)
+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+.+|..|+.+++|+.|++++|.+.+
T Consensus 198 ---------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 198 ---------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ---------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred ---------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 33445556666666666666664 44456666666666666666666666666666666666666666666
Q ss_pred cCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCC
Q 041082 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 337 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..|.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 666666666666666666666666666666666666666555443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-26 Score=249.40 Aligned_cols=248 Identities=24% Similarity=0.194 Sum_probs=187.6
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
..+.++.+++.++ .+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3568888888887 5777665 688999999999988888889999999999999999988888888887777766666
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 236 (639)
+|.|+ +..+..+..+++|+.|+|++|.+....+..|..+++|++|++++|...+.
T Consensus 132 ~n~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------- 186 (452)
T 3zyi_A 132 DNWLT------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------- 186 (452)
T ss_dssp SSCCS------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-------
T ss_pred CCcCC------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-------
Confidence 66554 34456677888999999999999888777888888888888887432210
Q ss_pred ccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch
Q 041082 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY 316 (639)
Q Consensus 237 ~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 316 (639)
..+..+..+++|++|++++|.+++. | .+..+++|+.|++++|++++..|.
T Consensus 187 ----------------------------i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 187 ----------------------------ISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp ----------------------------ECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred ----------------------------cChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcc
Confidence 1123456778888888888888753 3 466777778888888877777777
Q ss_pred hhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCC
Q 041082 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 317 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 382 (639)
.|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 777777777777777777777777777777777777777777776666666666666666666655
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=247.68 Aligned_cols=247 Identities=23% Similarity=0.220 Sum_probs=190.1
Q ss_pred CCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 78 LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 78 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.+.++.+++.++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567888888888 6887776 6889999999999988888999999999999999999988888888887777777766
Q ss_pred CCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhc
Q 041082 158 NNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237 (639)
Q Consensus 158 N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 237 (639)
|.|+ +..+..|..+++|+.|+|++|.+....+..|..+++|++|++++|...+.
T Consensus 122 n~l~------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------- 175 (440)
T 3zyj_A 122 NRLT------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-------- 175 (440)
T ss_dssp SCCS------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------
T ss_pred CcCC------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--------
Confidence 6655 34455677888999999999999888888888899999998887533211
Q ss_pred cccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 238 ~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
..+..+..+++|++|++++|.++. +| .+..+++|+.|++++|++++..|..
T Consensus 176 ---------------------------i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 176 ---------------------------ISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp ---------------------------ECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred ---------------------------eCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhh
Confidence 112345677888888888888873 44 3667777777777777777777777
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCC
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 382 (639)
|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77777777777777777777777777777777777777777776666666667777777777665
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-28 Score=252.03 Aligned_cols=255 Identities=21% Similarity=0.173 Sum_probs=156.3
Q ss_pred EEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 80 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
.++++.+.+...++..+..+++|+.|++++|++.+..|..|.++++|++|+|++|++++..+ +..+++|++|+|++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444433333333344455555555555554444455555555555555555544332 4555555555555555
Q ss_pred CCCCC-CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 160 LTDVQ-IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 160 l~~~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
++++. .++|+.|++++|++++..+.. +++|+.|++++|.+.+..+..|+.+++|++|++++|.+++.
T Consensus 92 l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 159 (317)
T 3o53_A 92 VQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------- 159 (317)
T ss_dssp EEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---------
T ss_pred cccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---------
Confidence 44432 345556666666655544332 45677777777777777666777777777777777766542
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhh-cCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
.+..+ ..+++|++|++++|.+++. |. ...+++|+.|++++|++++..+ .
T Consensus 160 ---------------------------~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~ 209 (317)
T 3o53_A 160 ---------------------------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-E 209 (317)
T ss_dssp ---------------------------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-G
T ss_pred ---------------------------cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-h
Confidence 12222 3566788888888877754 22 2246778888888888775444 4
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEccc
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLSS 379 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls~ 379 (639)
|..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++++
T Consensus 210 ~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 7778888888888888874 5667777788888888888887 66677777777777776663
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.3e-27 Score=236.46 Aligned_cols=223 Identities=25% Similarity=0.250 Sum_probs=141.5
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++.++++++. +|..+ .++|++|+|++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456777777763 56544 368899999999998777777888888888888888888777888888888888888888
Q ss_pred c-CccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCC
Q 041082 135 F-LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL 213 (639)
Q Consensus 135 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 213 (639)
. +....|..+..+++|++|++++|.++ +..|..+..+++|+.|++++|.+.+..+..|+.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ------------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCC------------------EECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 6 66555666666655555555554443 3445556666667777777776666655556666
Q ss_pred CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccc
Q 041082 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293 (639)
Q Consensus 214 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 293 (639)
++|++|++++|.+++.+ +..+..+++|+.|++++|.+++..|..
T Consensus 153 ~~L~~L~l~~n~l~~~~------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVP------------------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp TTCCEEECCSSCCCEEC------------------------------------TTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCccEEECCCCcccccC------------------------------------HHHhcCccccCEEECCCCcccccCHhH
Confidence 66666666666554321 122344555666666666555555555
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcC
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 334 (639)
+..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 55555555555555555544444444444444444444444
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.8e-27 Score=238.47 Aligned_cols=267 Identities=25% Similarity=0.295 Sum_probs=205.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
++++.+++.+. .+|..+ .++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 567654 368899999999998887788889999999999999998888888888888888888777
Q ss_pred C-CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhc
Q 041082 159 N-LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237 (639)
Q Consensus 159 ~-l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 237 (639)
. ++. ..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++.+
T Consensus 91 ~~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 145 (285)
T 1ozn_A 91 AQLRS------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------- 145 (285)
T ss_dssp TTCCC------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------
T ss_pred CCccc------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------
Confidence 5 443 34666778889999999999998888888888999999999888876532
Q ss_pred cccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 238 ~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..
T Consensus 146 -----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 146 -----------------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp -----------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred -----------------------------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 223556778889999999888766667888899999999999998888888
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccc--ccc
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN--LKV 395 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~--l~~ 395 (639)
|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. +-...++.+..+.|.+....|..+.+ +..
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~ 275 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhh
Confidence 888999999999999998877777888899999999999887644421 11112333445667777777776654 334
Q ss_pred cccccccC
Q 041082 396 LVGIDLSM 403 (639)
Q Consensus 396 L~~l~ls~ 403 (639)
+...++++
T Consensus 276 l~~~~l~~ 283 (285)
T 1ozn_A 276 LAANDLQG 283 (285)
T ss_dssp SCGGGSCC
T ss_pred cCHHHhcc
Confidence 44444443
No 69
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.94 E-value=7.6e-28 Score=247.64 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=145.5
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.+||.||++...+ ++.||||.+..... ...+.|..|+.+++ .+|||||++|
T Consensus 75 G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G 154 (353)
T 4ase_A 75 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 154 (353)
T ss_dssp CSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTE
T ss_pred CCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCC
Confidence 5699999998653 35799999865432 23456777777643 2689999999
Q ss_pred CchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.++|+.. ...++|.++..|+.+||+||+||| +.+|+||||||+|||+++++.+||+|||+
T Consensus 155 ~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~vKi~DFGl 231 (353)
T 4ase_A 155 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGL 231 (353)
T ss_dssp EHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGG
T ss_pred CHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceeeCCCCCEEECcchh
Confidence 999998642 234899999999999999999999 67899999999999999999999999999
Q ss_pred cccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 523 AKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 523 a~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
|+.+..+.... .. ...+.++||| | | |+.|+.+.-. ...+...+....
T Consensus 232 ar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-~~~~~~~i~~g~----- 305 (353)
T 4ase_A 232 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGT----- 305 (353)
T ss_dssp GSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHTC-----
T ss_pred hhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-HHHHHHHHHcCC-----
Confidence 99775443210 00 0122378888 6 6 7888753211 111222221110
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.+.+..+...+.+++.+||+.+|++||||.||+++|+++.++
T Consensus 306 -------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 306 -------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp -------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 0011222344577899999999999999999999999887553
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.4e-25 Score=248.11 Aligned_cols=268 Identities=24% Similarity=0.335 Sum_probs=223.5
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEec
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 155 (639)
.++++|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|+|++|++++ +|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46899999999999 7888776 899999999999984 555 57899999999999985 554 7899999999
Q ss_pred CCCCCCCCC--CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 156 SHNNLTDVQ--IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 156 s~N~l~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
++|.++.++ +++|+.|++++|++++ +|.. +++|+.|++++|.++++ |. .+++|+.|++++|.+++.+.
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~-- 178 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLPM-- 178 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCcc--
Confidence 999998864 6899999999999986 5543 48999999999999875 33 35789999999999987541
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
...+|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|+.|++++|++++
T Consensus 179 --------------~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 179 --------------LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS- 235 (622)
T ss_dssp --------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-
T ss_pred --------------cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-
Confidence 12478899999999986 443 35789999999999984 4532 4789999999999987
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNL 393 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 393 (639)
+| ..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 44 456899999999999985 554 5688999999999999 467889999999999999999998888877665
Q ss_pred cc
Q 041082 394 KV 395 (639)
Q Consensus 394 ~~ 395 (639)
+.
T Consensus 308 ~~ 309 (622)
T 3g06_A 308 TS 309 (622)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1e-28 Score=252.32 Aligned_cols=253 Identities=20% Similarity=0.173 Sum_probs=194.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC-CccCCcccc-------CCcccceeeccCCcCCCCCCccc--c
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF-SGSIPSSIF-------NMSSLLSIYFNNNTLFGEIPEEL--G 121 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~ 121 (639)
.+++.|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|++++|.+.+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3567788899998 678776654 99999999999 567887776 89999999999999999999986 8
Q ss_pred CCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCC
Q 041082 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201 (639)
Q Consensus 122 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 201 (639)
.+++|++|+|++|++++. |..+..+... .+++|++|+|++|++++..|..+..+++|+.|++++|+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQW-------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTT-------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHh-------------hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 999999999999999987 7777665110 12455555555566666677888889999999999999
Q ss_pred Cccc--Ccccc--CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCC
Q 041082 202 FFDL--IPNTF--GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277 (639)
Q Consensus 202 l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 277 (639)
+.+. .|..+ +.+++|++|++++|.+++.+. .....+..+++|+
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSG---------------------------------VCSALAAARVQLQ 231 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---------------------------------HHHHHHHTTCCCS
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---------------------------------HHHHHHhcCCCCC
Confidence 8765 23334 889999999999998874210 0112234667888
Q ss_pred EEECCCCCCCcccc-ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCC
Q 041082 278 AIYLAGNKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356 (639)
Q Consensus 278 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 356 (639)
.|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 88888888887664 34556788888888888887 5565554 7888888888888876 55 788888888888888
Q ss_pred cCcc
Q 041082 357 KLIS 360 (639)
Q Consensus 357 ~l~~ 360 (639)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8875
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-28 Score=249.66 Aligned_cols=255 Identities=22% Similarity=0.233 Sum_probs=187.3
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
++..++++.+.+...++..+..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.+..| |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 55667777777765555566778899999999999998888899999999999999999987665 9999999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC---CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV---QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
+|++++.. ..++|++|++++|.++++ .+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 99998543 348999999999999875 3789999999999999988889999999999999999999987777
Q ss_pred c-CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 210 F-GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 210 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
+ ..+++|++|++++|.+++.+.. ..+++|+.|++++|.+++
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------------~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ--------------------------------------VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC--------------------------------------CCCTTCCEEECCSSCCCE
T ss_pred HhhccCcCCEEECCCCcCcccccc--------------------------------------cccccCCEEECCCCcCCc
Confidence 6 4789999999999998754211 113344455555555443
Q ss_pred cccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCc-ccCCccccCCCCCCEEeCC
Q 041082 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSLD 354 (639)
Q Consensus 289 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~ 354 (639)
. |..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++
T Consensus 206 l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 206 M-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred c-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 2 2234444555555555555542 3444444555555555555554 4444444455555555444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-27 Score=254.92 Aligned_cols=236 Identities=22% Similarity=0.192 Sum_probs=144.6
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++.+| |+.+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3366666666666666555666666666666666666655444 5666666666666666654322 14444444
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcch
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 234 (639)
|+ +|.+++..+. .+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++.
T Consensus 106 L~------------------~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 159 (487)
T 3oja_A 106 AA------------------NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV----- 159 (487)
T ss_dssp CC------------------SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-----
T ss_pred Cc------------------CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-----
Confidence 44 4444443332 235566666666666666666666666666666666655432
Q ss_pred hhccccCCcchhhhccCccEEEeecCccccccchhhc-CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 235 ~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
.|..+. .+++|+.|+|++|.+++..+ ...+++|+.|++++|++++.
T Consensus 160 -------------------------------~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 160 -------------------------------NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp -------------------------------EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred -------------------------------ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 233332 45667777777777765422 23467777777777777764
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEcc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLS 378 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls 378 (639)
+| .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|..++++
T Consensus 207 ~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44 37777788888888888775 5666777778888888888776 5566666666666555554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=258.53 Aligned_cols=233 Identities=22% Similarity=0.224 Sum_probs=170.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|+.|+|++|.+++..+ .++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 79999999999999888899999999999999999997766 9999999999999999986443 3899999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC-
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG- 211 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~- 211 (639)
+|.+++..+.. + ++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+.
T Consensus 108 ~N~l~~~~~~~---l------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 108 NNNISRVSCSR---G------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp SSCCCCEEECC---C------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCcCCCCCccc---c------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 99999776532 3 3455555556666666677777788888888888888887777775
Q ss_pred CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc
Q 041082 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 291 (639)
.+++|+.|+|++|.+++.++ ...+++|+.|+|++|.+++..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~--------------------------------------~~~l~~L~~L~Ls~N~l~~~~- 207 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG--------------------------------------QVVFAKLKTLDLSSNKLAFMG- 207 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC--------------------------------------CCCCTTCCEEECCSSCCCEEC-
T ss_pred hCCcccEEecCCCccccccc--------------------------------------cccCCCCCEEECCCCCCCCCC-
Confidence 68888888888887765311 112455666666666666433
Q ss_pred ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCc-ccCCccccCCCCCCEEeC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSL 353 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l 353 (639)
..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 335566666666666666664 4555666666777777777665 455555666655555544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.1e-25 Score=220.74 Aligned_cols=170 Identities=29% Similarity=0.420 Sum_probs=125.2
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.+.|.|.|+.|... ..++.+++++++++. +|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36799999999763 245689999999984 676665 68999999999999777778999999999999999988776
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEE
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILE 196 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 196 (639)
+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++. ..|..+..+++|+.|+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS------------------LPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC------------------CCTTTTTTCTTCCEEE
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe------------------eCHHHhCcCcCCCEEE
Confidence 6677889999999999999887766667777666666666665543 3344455556666666
Q ss_pred cccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 197 LQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
+++|.+.+..+..|..+++|++|++++|.+++
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 66666655555555556666666665555544
No 76
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.92 E-value=2e-25 Score=227.50 Aligned_cols=194 Identities=24% Similarity=0.288 Sum_probs=142.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .|..||||+++.........+..|+.+++. +||||+++|+|.+++..
T Consensus 85 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~ 164 (346)
T 4fih_A 85 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH 164 (346)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc
Confidence 569999999864 689999999987665556677888888653 78999999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT-------- 537 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~-------- 537 (639)
..+++.....|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...........
T Consensus 165 --~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP 239 (346)
T 4fih_A 165 --TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 239 (346)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCH
Confidence 35899999999999999999999 66899999999999999999999999999998754432111111
Q ss_pred -------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 538 -------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 538 -------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
.+.++||| | ||+.|..+. ....+...+....+ +.+. ........+.
T Consensus 240 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~~~~--------~~~~--------~~~~~s~~~~ 301 (346)
T 4fih_A 240 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLP--------PRLK--------NLHKVSPSLK 301 (346)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSSC--------CCCS--------CGGGSCHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHcCCC--------CCCC--------ccccCCHHHH
Confidence 12378888 6 888887531 11112222221111 1110 0111223456
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++..+|++.+|++|||+.|+++
T Consensus 302 dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 302 GFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHcCCChhHCcCHHHHhc
Confidence 7888999999999999999875
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.4e-24 Score=212.33 Aligned_cols=147 Identities=28% Similarity=0.299 Sum_probs=100.6
Q ss_pred CCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcccc
Q 041082 61 GLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTI 140 (639)
Q Consensus 61 ~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 140 (639)
+.+++ .+|..+. ++|++|+|++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++|.+++..
T Consensus 16 ~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 33443 4666554 57899999999998777778888888888888888888777778888888888888888888777
Q ss_pred CccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc-CccccCCCCCCCEE
Q 041082 141 HSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRL 219 (639)
Q Consensus 141 p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 219 (639)
+..|.++++|++|++++|.++. ..+..+..+++|+.|++++|.+.+. +|..|+.+++|++|
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred hhhhcCCccccEEECCCCCccc------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 7777776666666666555442 2233455556666666666666543 35555555555555
Q ss_pred EccCCCCCC
Q 041082 220 NLYDNYLTS 228 (639)
Q Consensus 220 ~Ls~N~l~~ 228 (639)
++++|++++
T Consensus 155 ~Ls~N~l~~ 163 (276)
T 2z62_A 155 DLSSNKIQS 163 (276)
T ss_dssp ECCSSCCCE
T ss_pred ECCCCCCCc
Confidence 555555543
No 78
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.91 E-value=9.4e-25 Score=218.08 Aligned_cols=197 Identities=21% Similarity=0.269 Sum_probs=137.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .+..||+|.+.... ......|..|+.+++ .+|||||++|+|
T Consensus 37 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L 116 (290)
T 3fpq_A 37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL 116 (290)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBH
T ss_pred CcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCH
Confidence 579999999864 57899999986543 223456778887743 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS---FT- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~---~~- 534 (639)
.+++.. ...+++.....|+.+|+.||+|||+. .++|+||||||.|||+++ ++.+||+|||+|+........ ++
T Consensus 117 ~~~l~~-~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp 194 (290)
T 3fpq_A 117 KTYLKR-FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194 (290)
T ss_dssp HHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCc
Confidence 999975 34689999999999999999999943 346999999999999985 799999999999865433211 00
Q ss_pred -----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|..+ ...................++ ..+.
T Consensus 195 ~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~----~~~~~~~~~~i~~~~~~~~~~--------------~~~~ 256 (290)
T 3fpq_A 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSE----CQNAAQIYRRVTSGVKPASFD--------------KVAI 256 (290)
T ss_dssp CCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTT----CSSHHHHHHHHTTTCCCGGGG--------------GCCC
T ss_pred cccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC----CCcHHHHHHHHHcCCCCCCCC--------------ccCC
Confidence 0 0112378888 6 88888753 122222222111110000000 0111
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 257 ~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 257 PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 24667889999999999999999875
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=210.51 Aligned_cols=206 Identities=26% Similarity=0.206 Sum_probs=95.8
Q ss_pred ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCc
Q 041082 101 SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSG 180 (639)
Q Consensus 101 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~ 180 (639)
+|+.|++++|.+.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++ +
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------~ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------S 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------E
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------------c
Confidence 4555555555555444444555555555555555555444444444444444444333332 2
Q ss_pred cCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecC
Q 041082 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260 (639)
Q Consensus 181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n 260 (639)
..|..+.++++|+.|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------------ 140 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------------------------------ 140 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC------------------------------
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec------------------------------
Confidence 23334444455555555555555444444555555555555555443310
Q ss_pred ccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCc----EEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc
Q 041082 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ----LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336 (639)
Q Consensus 261 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 336 (639)
+|..+..+++|+.|++++|.+++..+..+..+.+|+ .|++++|++.+..+..+.. .+|+.|++++|.+++
T Consensus 141 -----l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 141 -----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred -----CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 122333344444444444444443333343333333 4444555444433333322 245555555555554
Q ss_pred cCCccccCCCCCCEEeCCCCcCcc
Q 041082 337 SIPTCFGNQTSLRILSLDSNKLIS 360 (639)
Q Consensus 337 ~~p~~~~~l~~L~~L~l~~N~l~~ 360 (639)
..+..|..+++|+.|++++|.+.+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCHhHhcccccccEEEccCCcccc
Confidence 444444555555555555555554
No 80
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.91 E-value=2.4e-25 Score=227.34 Aligned_cols=194 Identities=20% Similarity=0.304 Sum_probs=137.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||++.. ..|..||||++.... ......+..|+.+++. +||||+++|+|.+++
T Consensus 35 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i 114 (350)
T 4b9d_A 35 GSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114 (350)
T ss_dssp ----CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHH
Confidence 46999999985 468999999987543 2234567788877553 789999999999999
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----cc---
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----FT--- 534 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----~~--- 534 (639)
... ...+++.+...|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...... ++
T Consensus 115 ~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~Y 191 (350)
T 4b9d_A 115 NAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYY 191 (350)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTT
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccc
Confidence 653 345788888999999999999999 678999999999999999999999999999977543210 00
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|... .+..+.+........ .+ + +.....
T Consensus 192 mAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~-----~~~~~~~~~i~~~~~----~~-~----------~~~~s~ 251 (350)
T 4b9d_A 192 LSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA-----GSMKNLVLKIISGSF----PP-V----------SLHYSY 251 (350)
T ss_dssp CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHTCC----CC-C----------CTTSCH
T ss_pred cCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHcCCC----CC-C----------CccCCH
Confidence 00112378998 7 89888753 222222222111110 00 0 011122
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++|||+.|+++
T Consensus 252 ~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 252 DLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHccCChhHCcCHHHHhc
Confidence 4667888999999999999999975
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.5e-23 Score=206.95 Aligned_cols=186 Identities=24% Similarity=0.293 Sum_probs=167.0
Q ss_pred CCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCC
Q 041082 38 TVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP 117 (639)
Q Consensus 38 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 117 (639)
+||.|.|.+|.. ..+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 467899999953 3456899999998 5777666 689999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCC
Q 041082 118 EELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASK 191 (639)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~ 191 (639)
..|.++++|++|+|++|++++..+..|..+++|++|+|++|.|+.+. +++|+.|+|++|++++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 89999999999999999999888888999999999999999998743 688999999999999888878999999
Q ss_pred CcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 192 LSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 192 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
|+.|+|++|++.+..+..|..+++|+.|++++|.++..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999998888899999999999999999875
No 82
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=227.28 Aligned_cols=194 Identities=24% Similarity=0.289 Sum_probs=142.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .|..||||+++.........+..|+.+++. +|||||++|+|.+++..
T Consensus 162 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~ 241 (423)
T 4fie_A 162 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH 241 (423)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhc
Confidence 569999999864 689999999987766556678888888653 78999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT-------- 537 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~-------- 537 (639)
..+++.+...|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...........
T Consensus 242 --~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP 316 (423)
T 4fie_A 242 --TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 316 (423)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCH
Confidence 34899999999999999999999 66899999999999999999999999999997754432111111
Q ss_pred -------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 538 -------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 538 -------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
.+.++||| | ||+.|+.+. ....+...+....+ +.+.. .......+.
T Consensus 317 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~~~~--------~~~~~--------~~~~s~~~~ 378 (423)
T 4fie_A 317 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLP--------PRLKN--------LHKVSPSLK 378 (423)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC--------CCCSC--------TTSSCHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHcCCC--------CCCcc--------cccCCHHHH
Confidence 12378888 6 888887531 11112222221111 11100 011122456
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++..+|++.+|++|||+.|+++
T Consensus 379 dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 379 GFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHcCCChhHCcCHHHHhc
Confidence 7888999999999999999875
No 83
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.90 E-value=8e-24 Score=217.49 Aligned_cols=216 Identities=32% Similarity=0.468 Sum_probs=165.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++...++..+|+|++...... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 41 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 3uim_A 41 GGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE 120 (326)
T ss_dssp CSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHC
T ss_pred CCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHh
Confidence 4689999999888999999998754322 2235666776643 268999999999999876
Q ss_pred C---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc------
Q 041082 466 S---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ------ 535 (639)
Q Consensus 466 ~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~------ 535 (639)
. ...++|..+..|+.+++.||+|||..+.++|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 121 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~ 200 (326)
T 3uim_A 121 RPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIG 200 (326)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcC
Confidence 2 2359999999999999999999997767799999999999999999999999999998765332210 00
Q ss_pred ---------cccccccccc--c-------CCCCCCCcc---CCCccchHHHHHhhCCCC-cceeeeccccccccccccch
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNF---FSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~---~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | ||+.|.+.. ......+.+|+....... ....+++.+... ..
T Consensus 201 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 274 (326)
T 3uim_A 201 HIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN------YK 274 (326)
T ss_dssp GCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS------CC
T ss_pred ccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc------cC
Confidence 0123378999 7 899998532 234567788887766554 556666655432 34
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.++...+.+++..|++.+|++||||.||+++|+..
T Consensus 275 ~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 275 DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp HHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 67788899999999999999999999999999753
No 84
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.90 E-value=1.6e-23 Score=214.79 Aligned_cols=215 Identities=29% Similarity=0.453 Sum_probs=164.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++..........+..|+..++ .+|+||+++|+|.+++...
T Consensus 50 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 129 (321)
T 2qkw_B 50 GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGS 129 (321)
T ss_dssp CSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSS
T ss_pred CCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhcc
Confidence 46899999998889999999987665555567777777643 3689999999999998753
Q ss_pred C---ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c-----c--
Q 041082 467 N---YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-----T-- 534 (639)
Q Consensus 467 ~---~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-----~-- 534 (639)
. ..++|.++.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ . +
T Consensus 130 ~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~ 206 (321)
T 2qkw_B 130 DLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLG 206 (321)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETT
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCcc
Confidence 2 35899999999999999999999 568999999999999999999999999999865432111 0 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccC-CCccchHHHHHhhCCC-CcceeeeccccccccccccchHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFF-SGEMTLKSWVNDLLPI-SVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~-~~~~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.++||| | ||+.|..... .....+.+|+...... ...+.+++.+.. ....+
T Consensus 207 y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 280 (321)
T 2qkw_B 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLAD------KIRPE 280 (321)
T ss_dssp TCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTT------CSCHH
T ss_pred ccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcc------ccCHH
Confidence 01123478999 7 8998876543 2345667776543333 345566665543 22467
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+...+.+++.+|++.+|++||+|.||+++|+.+.+
T Consensus 281 ~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 281 SLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 78889999999999999999999999999997753
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.9e-23 Score=203.40 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=174.9
Q ss_pred CCCCCCCc--CccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 33 WNTSSTVC--HWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 33 w~~~~~~c--~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
|.+..+.| .|..|.|+... ..++.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++
T Consensus 7 ~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 7 KDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp GGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 76666556 47788887531 35889999999999877778999999999999999999766667789999
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWG 175 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~ 175 (639)
|++|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++.+. +++|+.|+|++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 999999999999888888999999999999999999988888999999999999999998743 67999999999
Q ss_pred CccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCC
Q 041082 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 176 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
|++++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999888888889999999999999999888888999999999999999887643
No 86
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.90 E-value=1.3e-24 Score=220.94 Aligned_cols=198 Identities=24% Similarity=0.282 Sum_probs=137.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.. ..|..||||+++..... ..|+.+++ ++|||||++|+|.+++..
T Consensus 69 G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~ 143 (336)
T 4g3f_A 69 GSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQ 143 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHH
Confidence 46999999986 46899999999754321 23555532 378999999999999975
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc-----ccccc-
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF-----TQNTN- 538 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~-----~~~~~- 538 (639)
. ..+++.....|+.+|+.||+||| +.+|+||||||.|||++.++ .+||+|||+|+.+..+.... ....+
T Consensus 144 ~-~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT 219 (336)
T 4g3f_A 144 M-GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGT 219 (336)
T ss_dssp H-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccC
Confidence 3 35899999999999999999999 67899999999999999987 69999999999775432110 00011
Q ss_pred --------------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 539 --------------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 539 --------------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+.++||| | ||+.|..+.... .+..-+... +.... +.++.
T Consensus 220 ~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~~-~~~~~---------------~~~~~ 281 (336)
T 4g3f_A 220 ETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCLKIASE-PPPIR---------------EIPPS 281 (336)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHHHHHHS-CCGGG---------------GSCTT
T ss_pred ccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHcC-CCCch---------------hcCcc
Confidence 2267888 6 788887543211 111111110 00000 01122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+...+.++..+|++.+|++|||+.|+++.|..+...
T Consensus 282 ~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 282 CAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 334566788899999999999999999998876544
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.1e-25 Score=248.66 Aligned_cols=357 Identities=13% Similarity=0.113 Sum_probs=238.8
Q ss_pred CcEEEEEeCCCCC---cccCCcCCC------------CCCCCCEEeccCCcCCccCCccccCC--cccceeeccCCcC-C
Q 041082 52 YRVTTLNISGLSL---TSTIPSELG------------NLSSLQTLDLSFNWFSGSIPSSIFNM--SSLLSIYFNNNTL-F 113 (639)
Q Consensus 52 ~~v~~L~L~~~~l---~~~~p~~l~------------~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l-~ 113 (639)
.+++.|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|+.|+|++|.. .
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 5688888877532 245555444 68889999999998887666666653 4488888888762 1
Q ss_pred C-CCCccccCCCCCcEEecccccCccc----cCccccCCCCCCEEecCCCCCCCC----------CCCCccEEEccCCcc
Q 041082 114 G-EIPEELGNLAELETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNF 178 (639)
Q Consensus 114 ~-~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l 178 (639)
. .++....++++|++|+|++|.+++. ++..+..+++|++|+|++|.++++ .+++|+.|+|++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1222334778888888888887655 334556788888888888888732 267888888888877
Q ss_pred CccCCccccCCCCCcEEEcc---------------------------cCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 179 SGAIPHFIFNASKLSILELQ---------------------------KNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~---------------------------~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
.+ +|..+..+++|+.|+++ ++. ...+|..+..+++|++|++++|.++....
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 64 44444455555555554 321 23345566677888888888887643210
Q ss_pred cchhhccccCCcchh--------------hhccCccEEEeec-----------Ccccccc-chhhcCCCCCCEEECCCCC
Q 041082 232 ELSFLYSLSNCKYLE--------------QSSQSLEVFSMFN-----------CNISGGI-LEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~--------------~~~~~l~~l~l~~-----------n~l~~~~-~~~~~~l~~L~~L~Ls~N~ 285 (639)
...+..+.+++.|. ....+|+.|++++ +.+++.. ......+++|++|+++.|.
T Consensus 311 -~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 311 -CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp -HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred -HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 01122333443332 1246788888883 4555432 2234557888888888888
Q ss_pred CCccccccccC-CcCCcEEEcc----CCcCCCC-----CchhhcCCCCCcEEECCCCc--CcccCCcccc-CCCCCCEEe
Q 041082 286 LNGSIPITLCK-LQKLQLLSFV----DNKLEGP-----IPYEFCRLASLYELDLSGNK--LSGSIPTCFG-NQTSLRILS 352 (639)
Q Consensus 286 l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~ 352 (639)
+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++.|. +++..+..+. .+++|++|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 88766666655 7888888885 6677764 34456778889999987543 5544333333 478899999
Q ss_pred CCCCcCcc-cchhhhhcCCCCcEEEcccCCCCCC-CccccccccccccccccCCCCCCcCc
Q 041082 353 LDSNKLIS-IIPSTLWNLKDILYLNLSSNFFISP-LPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 353 l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|.+++ .++..+..+++|++|++++|.++.. ++.....+++|+.|++++|+++..|.
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 99999876 3455567889999999999987644 34445678889999999999887553
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.2e-22 Score=202.85 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
++++++++++++++|.++ .+|..+. +.++.|++++|.+.+..|..|..+++|++|+|++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 455666777777777766 4555443 4666666666666666666666666666666666666644321 3444444
Q ss_pred EEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 152 DLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 152 ~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
+|+|++|.|+ .+|..+..+++|+.|++++|++++..|..|..+++|++|+|++|++++
T Consensus 81 ~L~Ls~N~l~-------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 81 TLDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp EEECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred EEECCCCcCC-------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 4444444433 234444455555555555555555555555555555555555555443
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.6e-23 Score=206.77 Aligned_cols=229 Identities=25% Similarity=0.251 Sum_probs=162.2
Q ss_pred cccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccC
Q 041082 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFS 179 (639)
Q Consensus 100 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~ 179 (639)
..+..+++..+.+... ..+..+++|+.|++++|.++.. ..+..+++|++|+|++|.++++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------------- 78 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI---------------- 78 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC----------------
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc----------------
Confidence 3455566666665443 2345667777777777776632 2456666666666666555431
Q ss_pred ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeec
Q 041082 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN 259 (639)
Q Consensus 180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~ 259 (639)
..+..+++|++|++++|.+++..+..|+.+++|++|++++|++++.+
T Consensus 79 ----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------------- 125 (272)
T 3rfs_A 79 ----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP----------------------------- 125 (272)
T ss_dssp ----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------------------
T ss_pred ----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-----------------------------
Confidence 24556677777777777777776666777777777777777666432
Q ss_pred CccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC
Q 041082 260 CNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339 (639)
Q Consensus 260 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 339 (639)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|
T Consensus 126 -------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 126 -------DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 2234566777777888777776666667778888888888888887777777888888888888888888777
Q ss_pred ccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccc
Q 041082 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKV 395 (639)
Q Consensus 340 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 395 (639)
..|..+++|++|++++|.+.+. ++.|+++++..|.++|.+|.+++.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7788888888888888887754 445778888888888888888877654
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.8e-22 Score=201.03 Aligned_cols=113 Identities=26% Similarity=0.194 Sum_probs=51.4
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCc
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDIL 373 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 373 (639)
+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++.+.+..|..+++|+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 33344444444444444433334444444444444444444444444444444444444444444444444444444444
Q ss_pred EEEcccCCCCCCCccccccccccccccccCCCCC
Q 041082 374 YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 374 ~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
.|++++|++. .+|..+.....|+.+++++|++.
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 4444444443 23444444445555555555553
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.1e-22 Score=203.21 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=132.1
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.++. + ..++.+++|++|+|++|.+.+ + ..+..+++|++|++++|.+.+..|..|+++++|++|+|+
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 57788888888763 2 347788888888888888875 3 478888888888888888888777778888888888888
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 206 (639)
+|++++..+..+..+++|++|+|++|.++++. +++|+.|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 88888777777888888888888888777642 466777777777777666666667777777777777777766
Q ss_pred ccccCCCCCCCEEEccCCCCCC
Q 041082 207 PNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
|..|+.+++|++|++++|.+.+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHHhCCcCCCEEEccCCCccc
Confidence 6666777777777777776654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.7e-22 Score=197.90 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=106.4
Q ss_pred cCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-CCCCCCccccCCCCCcEEeccc-ccCccccCccc
Q 041082 67 TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT-LFGEIPEELGNLAELETLWLQN-NFLTGTIHSSI 144 (639)
Q Consensus 67 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~ 144 (639)
.+|. +. ++|++|+|++|++++..+..|.++++|+.|++++|. +.+..+..|.++++|++|+|++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4565 44 389999999999997777789999999999999997 7777677899999999999998 99987777788
Q ss_pred cCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCc---EEEcccC-CCcccCccccCCCCCCC-EE
Q 041082 145 FNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLS---ILELQKN-SFFDLIPNTFGNLINLK-RL 219 (639)
Q Consensus 145 ~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L 219 (639)
.++++|++|++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|
T Consensus 102 ~~l~~L~~L~l~~n~l~~-------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred CCCCCCCEEeCCCCCCcc-------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 888777777777666653 233 44555665 7777777 77776666677777777 77
Q ss_pred EccCCCCCC
Q 041082 220 NLYDNYLTS 228 (639)
Q Consensus 220 ~Ls~N~l~~ 228 (639)
++++|+++.
T Consensus 162 ~l~~n~l~~ 170 (239)
T 2xwt_C 162 KLYNNGFTS 170 (239)
T ss_dssp ECCSCCCCE
T ss_pred EcCCCCCcc
Confidence 777776653
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=5.1e-24 Score=237.49 Aligned_cols=387 Identities=13% Similarity=0.070 Sum_probs=260.6
Q ss_pred CCc-CccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC---CccCCcccc------------CCcc
Q 041082 38 TVC-HWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF---SGSIPSSIF------------NMSS 101 (639)
Q Consensus 38 ~~c-~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~ 101 (639)
-.| .|.++.+..+ ..+.+.+ .....++..+..+++|++|+|+++.. .+.+|..++ .+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 456 6998865432 2233332 22333344567888999999988542 244554444 7899
Q ss_pred cceeeccCCcCCCCCCccccCC--CCCcEEecccccC-cc-ccCccccCCCCCCEEecCCCCCCCC----------CCCC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNL--AELETLWLQNNFL-TG-TIHSSIFNLSSLSDLDLSHNNLTDV----------QIPN 167 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l-~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~ 167 (639)
|+.|+|++|.+.+..+..++.+ .+|++|+|++|.- +. .++....++++|++|+|++|.+++. .+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 9999999999887777777664 4599999999872 11 1222345789999999999988653 3689
Q ss_pred ccEEEccCCccC----ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCC-CCcchhhccccCC
Q 041082 168 LENLLLWGNNFS----GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS-TPELSFLYSLSNC 242 (639)
Q Consensus 168 L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~l~~l 242 (639)
|+.|++++|.++ +.++..+.++++|+.|++++|.+.+ +|..+..+++|+.|+++....... .+....+..+.++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 999999999997 3455666788999999999999887 467788899999999985322210 1100111111111
Q ss_pred c-------------chhhhccCccEEEeecCccccccc-hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC-
Q 041082 243 K-------------YLEQSSQSLEVFSMFNCNISGGIL-EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD- 307 (639)
Q Consensus 243 ~-------------~l~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~- 307 (639)
. .+.....+|+.|++++|.+++..+ ..+..+++|+.|+++++...+.++..+..+++|+.|++++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 1 112235689999999999776544 3467899999999994332333444456788999999993
Q ss_pred ----------CcCCCC-CchhhcCCCCCcEEECCCCcCcccCCccccC-CCCCCEEeCC----CCcCccc-----chhhh
Q 041082 308 ----------NKLEGP-IPYEFCRLASLYELDLSGNKLSGSIPTCFGN-QTSLRILSLD----SNKLISI-----IPSTL 366 (639)
Q Consensus 308 ----------N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~-----~p~~~ 366 (639)
|.+++. ++..+..+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 555533 2333456889999999888888766666655 8889999995 6778764 45557
Q ss_pred hcCCCCcEEEcccC--CCCCCCccccc-cccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 367 WNLKDILYLNLSSN--FFISPLPLEIG-NLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 367 ~~l~~L~~L~ls~N--~l~~~~p~~~~-~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+++|+.|+++.+ .+++..+..+. .+++|+.|++++|++++.+.... . .....++.++++.+.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~--~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF--S--RGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH--H--TCCTTCCEEEEESCC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH--H--hcCcccCeeeccCCC
Confidence 77899999999743 35544444444 37889999999998875322110 0 012345666666554
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.5e-24 Score=220.33 Aligned_cols=163 Identities=19% Similarity=0.287 Sum_probs=119.4
Q ss_pred CcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCC--CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC-
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNL--SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE- 115 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 115 (639)
+..|.++.|+. ..++.++++++.+. |..+..+ ++++.|++++|.+.+..|. +..+++|+.|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 34699998864 34678999998876 4456666 8999999999999977665 66899999999999998866
Q ss_pred CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC-CCCCCCCCCccEEEccCCccCccCCccccCCCCCcE
Q 041082 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN-NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194 (639)
Q Consensus 116 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 194 (639)
+|..+..+++|++|+|++|.+++..+..+..+++|++|+|++| .+++. .+|..+..+++|+.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------ALQTLLSSCSRLDE 172 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------HHHHHHHHCTTCCE
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------HHHHHHhcCCCCCE
Confidence 8888999999999999999998888888888888888888887 56531 12333444455555
Q ss_pred EEcccC-CCccc-CccccCCCC-CCCEEEccCC
Q 041082 195 LELQKN-SFFDL-IPNTFGNLI-NLKRLNLYDN 224 (639)
Q Consensus 195 L~L~~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N 224 (639)
|++++| .+++. ++..+..++ +|++|++++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 555555 55432 344455555 6666666655
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.2e-24 Score=222.21 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=73.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCC----ccccCCc-ccceeeccCCcCCCCCCccccCC-----CC
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIP----SSIFNMS-SLLSIYFNNNTLFGEIPEELGNL-----AE 125 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 125 (639)
..+++.|+++|.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+.+..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777766666668888888887776555 5666777 77777777777777666666654 77
Q ss_pred CcEEecccccCccccCcccc----CC-CCCCEEecCCCCCCC
Q 041082 126 LETLWLQNNFLTGTIHSSIF----NL-SSLSDLDLSHNNLTD 162 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~ 162 (639)
|++|+|++|.+++..+..+. .+ ++|++|+|++|.+++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 77777777777765555333 33 566666666666654
No 96
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.88 E-value=3.2e-23 Score=205.18 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=128.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. ..|..+|+|+++... ......+..|+.+++. +||||+ +|+|.++
T Consensus 24 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~ 102 (275)
T 3hyh_A 24 GSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDY 102 (275)
T ss_dssp ---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHH
Confidence 46899999985 468999999986432 2234567788877553 689999 6899988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----c----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----T---- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~---- 534 (639)
+... ..++......++.+++.||+||| +.+|+||||||+|||+++++.+||+|||+|+......... +
T Consensus 103 l~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~ 178 (275)
T 3hyh_A 103 IVQR-DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYA 178 (275)
T ss_dssp HHHS-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTS
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccC
Confidence 8653 45899999999999999999999 6689999999999999999999999999998765432210 0
Q ss_pred --c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+ ...+.++||| | ||+.|..+ .+..+..+....... .+.. ....
T Consensus 179 APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~-----~~~~~~~~~i~~~~~--~~p~--------------~~s~ 237 (275)
T 3hyh_A 179 APEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-----ESIPVLFKNISNGVY--TLPK--------------FLSP 237 (275)
T ss_dssp CHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC--CCCT--------------TSCH
T ss_pred ChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCC--CCCC--------------CCCH
Confidence 0 0112367888 7 88888753 122222221111100 0000 0112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++|||+.|+++
T Consensus 238 ~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 238 GAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHccCChhHCcCHHHHHc
Confidence 3567888999999999999999976
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.5e-22 Score=221.06 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=146.5
Q ss_pred cccCCCCCCCCc-----Cccce-ecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccc
Q 041082 29 LAKNWNTSSTVC-----HWTGV-SCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL 102 (639)
Q Consensus 29 l~~~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 102 (639)
+.+ |..+.++| .|.|+ .|.. .+++.|+|++|++++ +|..+. ++|++|+|++|.|+ .+| ..+++|
T Consensus 33 l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 555 87777888 69999 7864 478999999999987 777664 78999999999999 678 457899
Q ss_pred ceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccC
Q 041082 103 LSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAI 182 (639)
Q Consensus 103 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~ 182 (639)
+.|++++|++++ +|. |.+ +|++|+|++|++++ +|. .+++|+.|+|++|.|+++
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l------------------- 155 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML------------------- 155 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------------------
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-------------------
Confidence 999999999988 676 765 89999999999987 554 566677776666666543
Q ss_pred CccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcc
Q 041082 183 PHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262 (639)
Q Consensus 183 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l 262 (639)
|. .+++|+.|+|++|.+++ +|. |. ++|+.|+|++|.++..+. +. . +|
T Consensus 156 p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~-------------~L---------- 202 (571)
T 3cvr_A 156 PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VP--V-------------RN---------- 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------------------------
T ss_pred CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HH--H-------------hh----------
Confidence 33 34667777777777766 444 54 777777777777765432 10 0 11
Q ss_pred ccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCC
Q 041082 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL 321 (639)
Q Consensus 263 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 321 (639)
....+.|+.|+|++|.|+ .+|..+..+++|+.|++++|.+++.+|..++.+
T Consensus 203 -------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 203 -------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 011122455555555555 345555555566666666666655555555543
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=205.39 Aligned_cols=199 Identities=19% Similarity=0.179 Sum_probs=111.3
Q ss_pred cccceeeccCCcCCCCCCccc--cCCCCCcEEecccccCccccC----ccccCCCCCCEEecCCCCCCCC------CCCC
Q 041082 100 SSLLSIYFNNNTLFGEIPEEL--GNLAELETLWLQNNFLTGTIH----SSIFNLSSLSDLDLSHNNLTDV------QIPN 167 (639)
Q Consensus 100 ~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~------~l~~ 167 (639)
++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.++++ .+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555555 555555555555555554333 2233455555555555555442 2455
Q ss_pred ccEEEccCCccCcc--C--CccccCCCCCcEEEcccCCCcccCcc---ccCCCCCCCEEEccCCCCCCCCCcchhhcccc
Q 041082 168 LENLLLWGNNFSGA--I--PHFIFNASKLSILELQKNSFFDLIPN---TFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240 (639)
Q Consensus 168 L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 240 (639)
|++|+|++|++.+. + +..+..+++|++|++++|+++...+. .++.+++|++|+|++|.+++..|.. +.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-----~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-----AP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-----CS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-----HH
Confidence 56666666655431 1 22235667777777777777533211 2456677777777777776642210 00
Q ss_pred CCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcC
Q 041082 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR 320 (639)
Q Consensus 241 ~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 320 (639)
.+..+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..
T Consensus 246 ----------------------------~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 246 ----------------------------RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp ----------------------------SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred ----------------------------hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 0111246666677777666 4455443 5677777777777654 22 456
Q ss_pred CCCCcEEECCCCcCcc
Q 041082 321 LASLYELDLSGNKLSG 336 (639)
Q Consensus 321 l~~L~~L~Ls~N~l~~ 336 (639)
+++|+.|++++|.++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 6777777777777653
No 99
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.87 E-value=2.9e-23 Score=208.38 Aligned_cols=191 Identities=22% Similarity=0.285 Sum_probs=137.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. ..|..+|+|+++... ......+..|+++++. +||||+++|+|.++
T Consensus 43 G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~ 122 (311)
T 4aw0_A 43 GSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKY 122 (311)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHH
Confidence 46899999985 468999999997543 2334567778877543 78999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--cccccc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQNTN-- 538 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~~~~-- 538 (639)
+... ..++......++.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...... .....+
T Consensus 123 i~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp 198 (311)
T 4aw0_A 123 IRKI-GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTA 198 (311)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCG
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCc
Confidence 8753 35888888999999999999999 678999999999999999999999999999987543211 001111
Q ss_pred -------------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 539 -------------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 539 -------------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+.++|+| | ||+.|... .+..+.......... + +... .
T Consensus 199 ~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-----~~~~~~~~~i~~~~~-~-~p~~--------------~ 257 (311)
T 4aw0_A 199 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-----GNEGLIFAKIIKLEY-D-FPEK--------------F 257 (311)
T ss_dssp GGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-C-CCTT--------------C
T ss_pred ccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCC-C-CCcc--------------c
Confidence 2278898 7 89998753 112221111111100 0 0000 1
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
...+.++..+|++.+|++|||+.|+.
T Consensus 258 s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 258 FPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CHHHHHHHHHHccCCHhHCcChHHHc
Confidence 12356788899999999999999874
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=8.9e-24 Score=220.41 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=55.3
Q ss_pred EEeccCCcCCccCCccccCCcccceeeccCCcCCCCCC----ccccCCC-CCcEEecccccCccccCccccCC-----CC
Q 041082 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP----EELGNLA-ELETLWLQNNFLTGTIHSSIFNL-----SS 149 (639)
Q Consensus 80 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 149 (639)
+++|++|.+++.+|..+...++|+.|+|++|.+.+..+ ..|..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677777777777766666667777777777776666 5666777 77777777777776655555543 55
Q ss_pred CCEEecCCCCCC
Q 041082 150 LSDLDLSHNNLT 161 (639)
Q Consensus 150 L~~L~Ls~N~l~ 161 (639)
|++|+|++|.++
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 555555555544
No 101
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.87 E-value=2.4e-22 Score=206.01 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=145.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH------------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|||++....... ..+..|+..++ .+|+||+++|+|.++
T Consensus 35 G~~g~Vy~~~~~-~~~vavK~~~~~~~~~-~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~ 112 (322)
T 3soc_A 35 GRFGCVWKAQLL-NEYVAVKIFPIQDKQS-WQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF 112 (322)
T ss_dssp STTCEEEEEEET-TEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred cCceEEEEEEEC-CCEEEEEEeecCchHH-HHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHH
Confidence 568999999876 7899999987553322 23333444321 478999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccC-------CCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGY-------STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-------~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~ 533 (639)
+... .++|..+.+|+.++++||+|||..+ .++|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 113 l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~ 190 (322)
T 3soc_A 113 LKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT 190 (322)
T ss_dssp HHHC--CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCC
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCcccc
Confidence 8653 4899999999999999999999431 228999999999999999999999999999876543211 0
Q ss_pred -----c------c---------cccccccccc--c-------CCCCCCCccCCCcc-----------chHHHHHhhCCCC
Q 041082 534 -----T------Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEM-----------TLKSWVNDLLPIS 573 (639)
Q Consensus 534 -----~------~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~-----------~l~~~~~~~~~~~ 573 (639)
+ . ...+.++||| | ||+.|......... ...++........
T Consensus 191 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (322)
T 3soc_A 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKK 270 (322)
T ss_dssp TTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSC
T ss_pred ccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhccc
Confidence 0 0 0111256999 7 88888764322111 1222222111111
Q ss_pred cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 574 VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 574 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
. .+.+.. ......+...+.+++.+|++.+|++||||.||+++|+++++.
T Consensus 271 ~----~~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 271 K----RPVLRD-----YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp C----CCCCCG-----GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred C----CCCccc-----cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1 111110 011234566789999999999999999999999999998654
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=202.94 Aligned_cols=219 Identities=19% Similarity=0.182 Sum_probs=169.0
Q ss_pred CcEEEEEeCCCCCcccC-Cc--CCCCCCCCCEEeccCCcCCccCCccc--cCCcccceeeccCCcCCCCCC----ccccC
Q 041082 52 YRVTTLNISGLSLTSTI-PS--ELGNLSSLQTLDLSFNWFSGSIPSSI--FNMSSLLSIYFNNNTLFGEIP----EELGN 122 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~-p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 122 (639)
.+++.+.+.+..++... .. .+..+++|++|+|++|.+.+..|..+ ..+++|++|++++|.+.+..| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45788888888775311 10 12245679999999999999999998 899999999999999998766 45668
Q ss_pred CCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC----------CCCCCccEEEccCCccCccC--Cc-cccCC
Q 041082 123 LAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD----------VQIPNLENLLLWGNNFSGAI--PH-FIFNA 189 (639)
Q Consensus 123 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----------~~l~~L~~L~L~~N~l~~~~--p~-~~~~l 189 (639)
+++|++|+|++|++++..|..+..+++|++|+|++|.+.+ ..+++|++|+|++|+++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 9999999999999999888999999999999999999754 25789999999999997322 12 35678
Q ss_pred CCCcEEEcccCCCcccCccccCCC---CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccccc
Q 041082 190 SKLSILELQKNSFFDLIPNTFGNL---INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 190 ~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~ 266 (639)
++|++|+|++|.+.+..|..+..+ ++|++|+|++|+++..+..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---------------------------------- 269 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG---------------------------------- 269 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC----------------------------------
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh----------------------------------
Confidence 999999999999999888777776 6999999999998854321
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+ .++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 270 ---~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 270 ---L--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ---C--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred ---h--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 1 13556666666666643 22 445566666666666654
No 103
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.87 E-value=7.8e-22 Score=200.07 Aligned_cols=207 Identities=24% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .+..+|||++..... ..+..+.+... .+|+||+++|+|.
T Consensus 19 G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 94 (301)
T 3q4u_A 19 GRYGEVWRGSW-QGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLY 94 (301)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHH
T ss_pred CCCcEEEEEEE-CCEEEEEEEeccccc---hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHH
Confidence 56899999987 588999999865432 23333333311 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+++.. ..+++..+.+|+.++|.||+|||... ..+|+||||||+||+++.++.+||+|||+|+........
T Consensus 95 ~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~ 172 (301)
T 3q4u_A 95 DYLQL--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV 172 (301)
T ss_dssp HHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEEC
T ss_pred HHHhh--cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccc
Confidence 99954 45899999999999999999999432 678999999999999999999999999999765432211
Q ss_pred ------c------ccc----------ccccccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 533 ------F------TQN----------TNTCHHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 533 ------~------~~~----------~~~~~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
. +.. ..+.++||| | || +.|..+..........+......
T Consensus 173 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~ 252 (301)
T 3q4u_A 173 GNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCV 252 (301)
T ss_dssp CCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred cccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhc
Confidence 0 000 111367888 6 77 55554433333333332222211
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.... +.+.. ......+...+.+++.+|++.+|++||||.||+++|+++
T Consensus 253 ~~~~----~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 253 DQQR----PNIPN-----RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCCC----CCCCG-----GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCC----CCCCh-----hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 1111 11100 011234667788999999999999999999999999876
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=220.73 Aligned_cols=251 Identities=20% Similarity=0.201 Sum_probs=144.1
Q ss_pred CCcCCCCCCCCCEEeccCCcCCccC----CccccCCcccceeeccCC---cCCCCCCccc-------cCCCCCcEEeccc
Q 041082 68 IPSELGNLSSLQTLDLSFNWFSGSI----PSSIFNMSSLLSIYFNNN---TLFGEIPEEL-------GNLAELETLWLQN 133 (639)
Q Consensus 68 ~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~~ 133 (639)
++..+..+++|++|+|++|.+.+.. +..+..+++|+.|+|++| ++.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4455666777888888888777553 334667777777777774 4445556554 5777778888888
Q ss_pred ccCcc----ccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCC---------CCCcEEEcccC
Q 041082 134 NFLTG----TIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA---------SKLSILELQKN 200 (639)
Q Consensus 134 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---------~~L~~L~L~~N 200 (639)
|.+++ .+|..+..+++|++|+|++|.++.... ..++..+..+ ++|+.|++++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--------------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--------------AKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--------------HHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH--------------HHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 77776 456667777777777777776653110 0011111111 45555555555
Q ss_pred CCc-ccCc---cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCC
Q 041082 201 SFF-DLIP---NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNL 276 (639)
Q Consensus 201 ~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L 276 (639)
.+. +.+| ..+..+++|++|++++|.++.. . +....+..+..+++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----g---------------------------~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----G---------------------------IEHLLLEGLAYCQEL 218 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH----H---------------------------HHHHHHTTGGGCTTC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh----H---------------------------HHHHHHHHhhcCCCc
Confidence 554 2222 2344566666666666655410 0 000011133444555
Q ss_pred CEEECCCCCCC----ccccccccCCcCCcEEEccCCcCCCC----Cchhh--cCCCCCcEEECCCCcCcc----cCCccc
Q 041082 277 TAIYLAGNKLN----GSIPITLCKLQKLQLLSFVDNKLEGP----IPYEF--CRLASLYELDLSGNKLSG----SIPTCF 342 (639)
Q Consensus 277 ~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~ 342 (639)
+.|+|++|.++ +.+|..+..+++|+.|++++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 55555555553 34455555555666666666655543 34444 236677777777777776 355555
Q ss_pred -cCCCCCCEEeCCCCcCcccch
Q 041082 343 -GNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 343 -~~l~~L~~L~l~~N~l~~~~p 363 (639)
.++++|++|++++|.+++..+
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSH
T ss_pred HhcCCCceEEEccCCcCCcchh
Confidence 456777788888887776654
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.9e-23 Score=220.06 Aligned_cols=137 Identities=20% Similarity=0.291 Sum_probs=88.1
Q ss_pred CccEEEeecCccc-cccc---hhhcCCCCCCEEECCCCCCC--c---cccccccCCcCCcEEEccCCcCC----CCCchh
Q 041082 251 SLEVFSMFNCNIS-GGIL---EEISNLTNLTAIYLAGNKLN--G---SIPITLCKLQKLQLLSFVDNKLE----GPIPYE 317 (639)
Q Consensus 251 ~l~~l~l~~n~l~-~~~~---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~ 317 (639)
+|+.|++++|.++ +.++ ..+..+++|+.|++++|.++ | ..|..+..+++|+.|++++|.++ +.+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 3444444444443 2223 34556777888888888776 2 23436667777788888877775 456666
Q ss_pred hcCCCCCcEEECCCCcCccc----CCccc--cCCCCCCEEeCCCCcCcc----cchhhh-hcCCCCcEEEcccCCCCCCC
Q 041082 318 FCRLASLYELDLSGNKLSGS----IPTCF--GNQTSLRILSLDSNKLIS----IIPSTL-WNLKDILYLNLSSNFFISPL 386 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~l~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 386 (639)
+..+++|+.|+|++|.+++. +|..+ +.+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777777777777777654 34444 336777777777777776 355555 55677777777777776555
Q ss_pred c
Q 041082 387 P 387 (639)
Q Consensus 387 p 387 (639)
+
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 3
No 106
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.87 E-value=2.7e-23 Score=208.58 Aligned_cols=187 Identities=22% Similarity=0.254 Sum_probs=123.8
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.+||.||++.-. .+..+|+|+++.... .....+..|+++++ ++||||+++|+|.
T Consensus 35 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~ 114 (304)
T 3ubd_A 35 GSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLF 114 (304)
T ss_dssp GGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEH
T ss_pred CCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHH
Confidence 468999998752 357899999864432 12234555655532 3799999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT--- 537 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~--- 537 (639)
+++... ..+++.....++.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.............
T Consensus 115 ~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~ 190 (304)
T 3ubd_A 115 TRLSKE-VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTV 190 (304)
T ss_dssp HHHHHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCG
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCc
Confidence 998753 35899999999999999999999 66899999999999999999999999999986543221111111
Q ss_pred ------------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 538 ------------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 538 ------------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+.++||| | ||+.|... .+..+.......... .. +...
T Consensus 191 ~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~-----~~~~~~~~~i~~~~~------~~----------p~~~ 249 (304)
T 3ubd_A 191 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG-----KDRKETMTMILKAKL------GM----------PQFL 249 (304)
T ss_dssp GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CC----------CTTS
T ss_pred ccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCC-----cCHHHHHHHHHcCCC------CC----------CCcC
Confidence 12378888 6 88888753 122222211111100 00 0011
Q ss_pred HHHHHHHHhhccCCCCCCCCCH
Q 041082 597 LSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m 618 (639)
...+.++..+|++.+|++|||+
T Consensus 250 s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 250 SPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp CHHHHHHHHHHTCSSGGGSTTC
T ss_pred CHHHHHHHHHHcccCHHHCCCC
Confidence 1245678889999999999985
No 107
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.86 E-value=6.5e-23 Score=206.55 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=128.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------------------~Lv~e 452 (639)
.+||.||++.. .+|..+|||++...... ....+..|+.+++ ++|||
T Consensus 16 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE 95 (299)
T 4g31_A 16 GGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQ 95 (299)
T ss_dssp CC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEe
Confidence 57899999986 46899999998754432 3356777777732 36899
Q ss_pred cCCCCCchhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 453 YMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 453 y~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
|+++|+|.+++.... ...++.....|+.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+..+.
T Consensus 96 ~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~ 172 (299)
T 4g31_A 96 LCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDE 172 (299)
T ss_dssp CCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCCCC-------
T ss_pred cCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEccCccceecCCCc
Confidence 999999999987532 34677778899999999999999 6689999999999999999999999999999876543
Q ss_pred CCccc------------ccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCc-ceeeec--ccccccccccc
Q 041082 531 QSFTQ------------NTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDV--NLLSMEDKYFT 591 (639)
Q Consensus 531 ~~~~~------------~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~--~l~~~~~~~~~ 591 (639)
...+. ..+|. ...++ |.+-.+..|+|+-|..+.+.+ .|... .+.+.. .+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell---~Pf~~~~~~~~~~~~~~~~--~~p~ 247 (299)
T 4g31_A 173 EEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL---YPFSTQMERVRTLTDVRNL--KFPP 247 (299)
T ss_dssp -------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHH---SCCSSHHHHHHHHHHHHTT--CCCH
T ss_pred cccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHc---cCCCCccHHHHHHHHHhcC--CCCC
Confidence 21100 01111 00011 111122234445555555443 23210 000000 00000 0011
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+......++..+|++.+|++|||+.|+++
T Consensus 248 ~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 248 LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 12233344567889999999999999999986
No 108
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.86 E-value=1.2e-22 Score=205.63 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=144.2
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.+ ..+..+|+|++..........+..|+..++ .+|+||+++|+|
T Consensus 21 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L 100 (295)
T 3ugc_A 21 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100 (295)
T ss_dssp CSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBH
T ss_pred cCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCH
Confidence 56899999974 357899999987665555566777777633 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~- 535 (639)
.+++......+++..+.+++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 177 (295)
T 3ugc_A 101 RDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPG 177 (295)
T ss_dssp HHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CT
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCC
Confidence 9999765556999999999999999999999 6689999999999999999999999999998765432110 00
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeee----ccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD----VNLLSMEDK 588 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d----~~l~~~~~~ 588 (639)
...+.++||| | ||..|..... .++.............. ..+.. ..
T Consensus 178 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 249 (295)
T 3ugc_A 178 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKN--NG 249 (295)
T ss_dssp TCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH------HHHHHHHCTTCCTHHHHHHHHHHHHT--TC
T ss_pred CCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh------HHHHhhhcCccccchhHHHHHHHHhc--cC
Confidence 0112367888 5 6666654211 11111111000000000 00000 00
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+..+...+.+++..|++.+|++|||+.|++++|+++++.+
T Consensus 250 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 250 RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred cCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 01112234456788999999999999999999999999987654
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.8e-23 Score=211.02 Aligned_cols=256 Identities=20% Similarity=0.216 Sum_probs=143.1
Q ss_pred CCCEEeccCCcCCccCCccccCC--cccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc-cCccccCCCCCCEE
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNM--SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT-IHSSIFNLSSLSDL 153 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 153 (639)
.++.+++++|.+. |..+..+ +.++.|++++|.+.+..|. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 4455555 6677777777776665554 44567777777777766544 55555555444444
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCccc-CccccCCCCCCCEEEccCC-CCCCCC
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDL-IPNTFGNLINLKRLNLYDN-YLTSST 230 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~ 230 (639)
+|++| ++++..|..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 124 ~L~~~------------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 124 SLEGL------------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp ECTTC------------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred eCcCc------------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 44443 333445555666667777777776 45432 4444556666666666666 54421
Q ss_pred CcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCC-CCCEEECCCC--CCC-ccccccccCCcCCcEEEcc
Q 041082 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT-NLTAIYLAGN--KLN-GSIPITLCKLQKLQLLSFV 306 (639)
Q Consensus 231 ~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~ 306 (639)
.++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+++
T Consensus 185 ----------------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 185 ----------------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ----------------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ----------------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 1233445555 6666666666 333 3344455556666666666
Q ss_pred CCc-CCCCCchhhcCCCCCcEEECCCCc-CcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 307 DNK-LEGPIPYEFCRLASLYELDLSGNK-LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 307 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
+|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++...-..+. ..+..|+++.|.+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 666 454555556666666666666663 22111124556666667766666 3221111111 123444566677766
Q ss_pred CCcccccc
Q 041082 385 PLPLEIGN 392 (639)
Q Consensus 385 ~~p~~~~~ 392 (639)
..|..++.
T Consensus 308 ~~~~~~~~ 315 (336)
T 2ast_B 308 IARPTIGN 315 (336)
T ss_dssp TTCSSCSS
T ss_pred ccCCcccc
Confidence 66655543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.4e-21 Score=184.32 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=140.1
Q ss_pred CCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC
Q 041082 36 SSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 115 (639)
..+.|.|.+|.|+.. +++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++.+.
T Consensus 3 ~~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp TTCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 346688999999753 233 345444 35899999999999977777788999999999999999987
Q ss_pred CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEE
Q 041082 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSIL 195 (639)
Q Consensus 116 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 195 (639)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.++ +..+..+..+++|+.|
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ------------------SLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEE
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc------------------ccCHhHhccCCcCCEE
Confidence 7777899999999999999999777767778777777776666555 3445567778889999
Q ss_pred EcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCC
Q 041082 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT 274 (639)
Q Consensus 196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 274 (639)
++++|.+++..+..|..+++|++|++++|.+.+..+ .++.++++.|+++|.+|..++.++
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------------------~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------------------GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------------------TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------------------CHHHHHHHHHhCCceeeccCcccc
Confidence 999998888777778888999999999887765321 233444555556666665555443
No 111
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.86 E-value=4.2e-22 Score=208.90 Aligned_cols=202 Identities=25% Similarity=0.348 Sum_probs=145.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..||+|.+..... .....|..|+..++ .+|+||+++|+|.+++.
T Consensus 125 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~ 204 (377)
T 3cbl_A 125 GNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204 (377)
T ss_dssp ETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred CCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHH
Confidence 468999999986 688999999864322 22345666776643 37899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---------- 534 (639)
.....+++..+..++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 205 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y 281 (377)
T 3cbl_A 205 TEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKW 281 (377)
T ss_dssp HHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGG
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCc
Confidence 65556899999999999999999999 56799999999999999999999999999986543211100
Q ss_pred ---c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ---Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ---~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | | |+.|.... ......+++..... . ..+..+.
T Consensus 282 ~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~--~~~~~~~~~~~~~~-----~-------------~~~~~~~ 341 (377)
T 3cbl_A 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL--SNQQTREFVEKGGR-----L-------------PCPELCP 341 (377)
T ss_dssp SCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS--CHHHHHHHHHTTCC-----C-------------CCCTTCC
T ss_pred CCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC-----C-------------CCCCCCC
Confidence 0 0112378888 6 5 77776532 11112222221100 0 0112233
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+.+++.+|++.+|++||||.+|+++|+++++.
T Consensus 342 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 342 DAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 4577889999999999999999999999988654
No 112
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=203.92 Aligned_cols=224 Identities=22% Similarity=0.281 Sum_probs=145.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... ++..+|+|.+..........+..|+..++. +|+||+++|+|.+++..
T Consensus 21 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 100 (310)
T 3s95_A 21 GCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS 100 (310)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHh
Confidence 568999999874 588999998865545556677788877542 68999999999999986
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----------- 534 (639)
....++|.++..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 101 ~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~ 177 (310)
T 3s95_A 101 MDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRK 177 (310)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccc
Confidence 5567999999999999999999999 56799999999999999999999999999987654322100
Q ss_pred ---cccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCC--cceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 535 ---QNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPIS--VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 535 ---~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...++. ...++ |....+..|+|+-|..+.+.+....+.. ..+..+.............+..+...+.+++.
T Consensus 178 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 257 (310)
T 3s95_A 178 KRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITV 257 (310)
T ss_dssp --CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHH
T ss_pred cccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHH
Confidence 000000 00000 1111122233444444444443322211 00000000000000000001122345778899
Q ss_pred hccCCCCCCCCCHHHHHHHHHHhHHHHH
Q 041082 606 ECTAESPKQRINAKESVTRLLKIRDLLL 633 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~~l~~~~~~~~ 633 (639)
+|++.+|++||++.|+++.|+.++....
T Consensus 258 ~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 258 RCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987653
No 113
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.8e-21 Score=188.17 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=100.2
Q ss_pred cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc-CccccCccccCCCCCCEEecCC-CCCCCCCCCCc
Q 041082 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF-LTGTIHSSIFNLSSLSDLDLSH-NNLTDVQIPNL 168 (639)
Q Consensus 91 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~l~~L 168 (639)
.+|. +. .+|+.|++++|++++..+..|.++++|++|+|++|+ +++..+..|.++++|++|++++ |.++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------- 94 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT------- 94 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-------
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-------
Confidence 4555 33 377788888888777766677777888888888876 7655555666655555555544 4433
Q ss_pred cEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCC---EEEccCC-CCCCCCCcchhhccccCCcc
Q 041082 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLK---RLNLYDN-YLTSSTPELSFLYSLSNCKY 244 (639)
Q Consensus 169 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~~~l~~l~~ 244 (639)
+..+..|.++++|+.|++++|.+++ +|. |..+++|+ +|++++| .+++
T Consensus 95 -----------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~---------------- 145 (239)
T 2xwt_C 95 -----------YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS---------------- 145 (239)
T ss_dssp -----------EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE----------------
T ss_pred -----------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh----------------
Confidence 2334445556666666666666655 233 44444444 4444444 3332
Q ss_pred hhhhccCccEEEeecCccccccchhhcCCCCCC-EEECCCCCCCccccccccCCcCCcEEEccCCc-CCCCCchhhcCC-
Q 041082 245 LEQSSQSLEVFSMFNCNISGGILEEISNLTNLT-AIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK-LEGPIPYEFCRL- 321 (639)
Q Consensus 245 l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l- 321 (639)
..+..+..+++|+ .|++++|.++ .+|......++|+.|++++|+ +++..+..|..+
T Consensus 146 --------------------i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 146 --------------------IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp --------------------ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred --------------------cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 2223344555566 6666666655 233222122445555555552 444444444444
Q ss_pred CCCcEEECCCCcCc
Q 041082 322 ASLYELDLSGNKLS 335 (639)
Q Consensus 322 ~~L~~L~Ls~N~l~ 335 (639)
++|+.|++++|+++
T Consensus 205 ~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 205 SGPSLLDVSQTSVT 218 (239)
T ss_dssp BCCSEEECTTCCCC
T ss_pred cCCcEEECCCCccc
Confidence 44444554444444
No 114
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.86 E-value=2.5e-21 Score=197.05 Aligned_cols=212 Identities=27% Similarity=0.362 Sum_probs=152.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhh----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY----ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 42 G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 120 (307)
T 2nru_A 42 GGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDR 120 (307)
T ss_dssp CSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHH
Confidence 46889999987 57899999886432 223456667776643 268999999999998
Q ss_pred ccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------c
Q 041082 463 LYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------F 533 (639)
Q Consensus 463 l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~ 533 (639)
+.. ....++|..+.+|+.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ .
T Consensus 121 l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g 197 (307)
T 2nru_A 121 LSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVG 197 (307)
T ss_dssp HHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCS
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCC
Confidence 864 2346899999999999999999999 568999999999999999999999999999865432211 0
Q ss_pred cc---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC--Ccceeeeccccccccccccch
Q 041082 534 TQ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI--SVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ~~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ...+.++||| | ||+.|..... ....+..+....... ...+.+++.+.. ..
T Consensus 198 ~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (307)
T 2nru_A 198 TTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHR-EPQLLLDIKEEIEDEEKTIEDYIDKKMND-------AD 269 (307)
T ss_dssp CGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTB-SSSBTTHHHHHHHTTSCCHHHHSCSSCSC-------CC
T ss_pred CcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCc-chHHHHHHHHHhhhhhhhhhhhccccccc-------cc
Confidence 00 0123378999 6 8888876432 222233333322211 123334443321 23
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
..+...+.+++.+|++.+|++||++.+|+++|+++..
T Consensus 270 ~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 5667788999999999999999999999999998854
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=192.04 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+++|++|++++|.+.. +| .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|++++. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 44556666666665553 33 45556666666666665554333 55666666666666665542 2 45555555555
Q ss_pred ecCCCCCCC
Q 041082 154 DLSHNNLTD 162 (639)
Q Consensus 154 ~Ls~N~l~~ 162 (639)
+|++|.+++
T Consensus 113 ~l~~n~l~~ 121 (308)
T 1h6u_A 113 DLTSTQITD 121 (308)
T ss_dssp ECTTSCCCC
T ss_pred ECCCCCCCC
Confidence 555555443
No 116
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.85 E-value=2.3e-22 Score=210.28 Aligned_cols=202 Identities=22% Similarity=0.423 Sum_probs=137.0
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+.... ......|..|+.+++ .+||||+++|+|.+
T Consensus 56 G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~ 135 (373)
T 2qol_A 56 GEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135 (373)
T ss_dssp CSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHH
Confidence 468999999865 46789999987543 233456777777743 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ--- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~--- 535 (639)
+++.....++|.++..|+.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 136 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 212 (373)
T 2qol_A 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI 212 (373)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------------------
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCc
Confidence 99876667999999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 536 ------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | | |+.|.... ....+.+.+.. . ... ..+
T Consensus 213 ~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~--~~~~~~~~i~~---~---------~~~------~~~ 272 (373)
T 2qol_A 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM--SNQDVIKAVDE---G---------YRL------PPP 272 (373)
T ss_dssp -CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC--CHHHHHHHHHT---T---------EEC------CCC
T ss_pred CCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc---C---------CCC------CCC
Confidence 0112367888 6 4 77776431 11111111110 0 000 011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+...+.+++.+|++.+|++||+|.||+++|+++...
T Consensus 273 ~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 273 MDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp TTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 22344678899999999999999999999999988643
No 117
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.85 E-value=7.7e-22 Score=212.08 Aligned_cols=200 Identities=22% Similarity=0.385 Sum_probs=146.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++....+..||||.+..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 199 G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 277 (454)
T 1qcf_A 199 GQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDE 277 (454)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHHSHH
T ss_pred CCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCCcHHHHHHhcc
Confidence 568999999998889999999875432 34677778877542 689999999999999753
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~------ 534 (639)
...+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++........ .+
T Consensus 278 ~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP 354 (454)
T 1qcf_A 278 GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 354 (454)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCH
Confidence 235889999999999999999999 567999999999999999999999999999876432110 00
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ....+...+..... ...+..+...+
T Consensus 355 E~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~--~~~~~~~~i~~~~~------------------~~~~~~~~~~l 414 (454)
T 1qcf_A 355 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNPEVIRALERGYR------------------MPRPENCPEEL 414 (454)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHHTCC------------------CCCCTTSCHHH
T ss_pred HHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 77776531 11112222211110 01112334567
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++.+|++.+|++||||.+|+++|+.+..
T Consensus 415 ~~li~~cl~~dp~~RPt~~~i~~~L~~~~~ 444 (454)
T 1qcf_A 415 YNIMMRCWKNRPEERPTFEYIQSVLDDFYT 444 (454)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence 889999999999999999999999987743
No 118
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.85 E-value=5e-21 Score=197.46 Aligned_cols=210 Identities=24% Similarity=0.334 Sum_probs=138.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++... +..+|||++..... ..+..+.+.. ..+|+||+++|+|.
T Consensus 48 G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 123 (337)
T 3mdy_A 48 GRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLY 123 (337)
T ss_dssp ETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHH
T ss_pred CCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHH
Confidence 468999999876 88999999864432 1222222221 13789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT- 534 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~- 534 (639)
+++... .+++..+..++.+++.||+|||..+ .++|+||||||+||+++.++.+||+|||+|+..........
T Consensus 124 ~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~ 201 (337)
T 3mdy_A 124 DYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDI 201 (337)
T ss_dssp HHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred HHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccC
Confidence 998643 5899999999999999999999431 33899999999999999999999999999976543321100
Q ss_pred ---ccccc---------------c------ccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 535 ---QNTNT---------------C------HHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 535 ---~~~~~---------------~------~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
...++ . ++||| | || +.|.............+......
T Consensus 202 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 281 (337)
T 3mdy_A 202 PPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCI 281 (337)
T ss_dssp -CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred CCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhh
Confidence 00000 1 26887 5 66 33333222222222222111111
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
......+.. .....++...+.+++.+|++.+|++|||+.||+++|+.+.+.
T Consensus 282 ~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 282 KKLRPSFPN---------RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp SCCCCCCCG---------GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred hccCccccc---------cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 111111100 011246778899999999999999999999999999988764
No 119
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.85 E-value=2.2e-21 Score=193.47 Aligned_cols=201 Identities=24% Similarity=0.384 Sum_probs=145.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 21 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 99 (269)
T 4hcu_A 21 GQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ 99 (269)
T ss_dssp CSSCEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTT
T ss_pred CCccEEEEEEecCCCeEEEEEecccccC-HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhc
Confidence 5689999999988889999998754322 345677777643 2689999999999999765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ . +
T Consensus 100 ~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 176 (269)
T 4hcu_A 100 RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 176 (269)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCH
Confidence 667899999999999999999999 667999999999999999999999999999866432110 0 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ...+.+...... .....+. .....+
T Consensus 177 E~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~-----~~~~~~~~~~~~--~~~~~~~-------------~~~~~~ 236 (269)
T 4hcu_A 177 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTG--FRLYKPR-------------LASTHV 236 (269)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTT--CCCCCCT-------------TSCHHH
T ss_pred HHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHhcC--ccCCCCC-------------cCCHHH
Confidence 0 1123378888 6 6 77776531 111111111111 0011111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+++..|++.+|++||++.|++++|+++.+.
T Consensus 237 ~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 237 YQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 7788899999999999999999999998753
No 120
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.85 E-value=5.4e-21 Score=199.76 Aligned_cols=203 Identities=25% Similarity=0.352 Sum_probs=143.2
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++
T Consensus 92 G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 171 (370)
T 2psq_A 92 GCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171 (370)
T ss_dssp CSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred CCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCC
Confidence 468999999753 346799999865432 234556677766442 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..++|..+.+++.++++||+||| ..+|+||||||.||+++.++.+||+|||
T Consensus 172 g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG 248 (370)
T 2psq_A 172 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFG 248 (370)
T ss_dssp CBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCS
T ss_pred CCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEECCCCCEEEcccc
Confidence 99999886422 34899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++........ ... ...+.++||| | | |+.|.... ....+...+.....
T Consensus 249 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~--- 323 (370)
T 2psq_A 249 LARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGHR--- 323 (370)
T ss_dssp SCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCC---
T ss_pred CCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHhcCCC---
Confidence 99866543211 000 0122367888 6 6 77776532 11122222211100
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+.+..+...+.+++..|++.+|++||++.|+++.|+++....
T Consensus 324 ---------------~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 324 ---------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp ---------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0011223345778899999999999999999999999987543
No 121
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.84 E-value=6e-22 Score=206.75 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=141.8
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhhhhhhhHH-----------HHHHHH-----------------------
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYERAFKSFD-----------VACDMM----------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~~~~~~f~-----------~e~~~~----------------------- 446 (639)
.++|.||++.... +..+|+|++.........+.. .++...
T Consensus 46 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~ 125 (364)
T 3op5_A 46 GGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS 125 (364)
T ss_dssp C-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEE
T ss_pred CCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcc
Confidence 5689999998764 478999998654322111111 111110
Q ss_pred -HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeecccccc
Q 041082 447 -KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMA 523 (639)
Q Consensus 447 -~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla 523 (639)
..+||||+ +|+|.+++......++|..+..|+.+++.||+||| ..+|+||||||+||+++ .++.+||+|||+|
T Consensus 126 ~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a 201 (364)
T 3op5_A 126 YRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA 201 (364)
T ss_dssp EEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSCTTCEEECCCTTC
T ss_pred eEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCCCCeEEEEECCcc
Confidence 24789999 99999998765567999999999999999999999 56899999999999999 8899999999999
Q ss_pred ccccccCCCcc-------c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC
Q 041082 524 KLLLKEDQSFT-------Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI 572 (639)
Q Consensus 524 ~~~~~~~~~~~-------~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~ 572 (639)
+.+........ . ...+.++||| | ||+.|....... .....+.......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~~~~~~~~~~~~~ 280 (364)
T 3op5_A 202 YRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-PKYVRDSKIRYRE 280 (364)
T ss_dssp EESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-HHHHHHHHHHHHH
T ss_pred eecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-HHHHHHHHHHhhh
Confidence 87654321100 0 0112367888 6 888887643222 1222222222222
Q ss_pred CcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 573 SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 573 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+.. ..+...+.+++..|++.+|++||+|.+|++.|+++...
T Consensus 281 ~~~~~~~~~~~~---------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~ 330 (364)
T 3op5_A 281 NIASLMDKCFPA---------ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA 330 (364)
T ss_dssp CHHHHHHHHSCT---------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccc---------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 222222222210 11234577888899999999999999999999987654
No 122
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.9e-20 Score=183.32 Aligned_cols=156 Identities=27% Similarity=0.242 Sum_probs=98.5
Q ss_pred cEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCC
Q 041082 253 EVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332 (639)
Q Consensus 253 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 332 (639)
+.|++++|.+.+..+..+..+++|++|+|++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|+|++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 33333334443334444556666666666666666665656666666666666666666666666666666666666666
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 333 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.+++..+..|..+++|++|++++|++.++.+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|+|.+
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666555556666666666666666666666566666666666666666666555566666666666666666654
No 123
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2e-20 Score=190.29 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=108.6
Q ss_pred EEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 128 TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 128 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
.+.+..+.++..+ .+..+++|++|++++|.++.+ | .+..+++|+.|++++|.+.+..+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-------------------~-~~~~l~~L~~L~L~~n~i~~~~~ 80 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-------------------E-GVQYLNNLIGLELKDNQITDLAP 80 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-------------------T-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-------------------h-hhhccCCCCEEEccCCcCCCChh
Confidence 3344555554432 234556666666666666543 2 23445555555555555554433
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
+..+++|++|++++|.+++.+ .+.. ..+|+.|++++|.+.+. + .+..+++|+.|++++|.++
T Consensus 81 --~~~l~~L~~L~L~~n~l~~~~-------~~~~-------l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 81 --LKNLTKITELELSGNPLKNVS-------AIAG-------LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp --GTTCCSCCEEECCSCCCSCCG-------GGTT-------CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred --HccCCCCCEEEccCCcCCCch-------hhcC-------CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC
Confidence 555555555555555554321 0000 11223333333333221 1 2455666666666666665
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..| +.
T Consensus 143 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 143 NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 4333 5556666666666666654333 5566666666666666654433 5556666666666666655443 55
Q ss_pred cCCCCcEEEcccCCCCC
Q 041082 368 NLKDILYLNLSSNFFIS 384 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~ 384 (639)
.+++|+.|++++|++++
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 55666666666665543
No 124
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.84 E-value=6.4e-22 Score=203.09 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=143.7
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|||.+.... ......+..|+..++ .+||||+++|+|.+
T Consensus 60 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 139 (325)
T 3kul_A 60 GDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139 (325)
T ss_dssp TTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHH
T ss_pred CCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHH
Confidence 568999999874 34569999987543 233456777777643 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ--- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~--- 535 (639)
++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 140 ~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 216 (325)
T 3kul_A 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKI 216 (325)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---C
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCC
Confidence 99765567999999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 536 ------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | | |+.|.... ....+...+...... ..+
T Consensus 217 t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~ 276 (325)
T 3kul_A 217 PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM--TNRDVISSVEEGYRL------------------PAP 276 (325)
T ss_dssp CGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS--CHHHHHHHHHTTCCC------------------CCC
T ss_pred cccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHHcCCCC------------------CCC
Confidence 0112267888 6 5 77776431 111111111111000 001
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+...+.+++..|++.+|++||+|.||+++|+.+...
T Consensus 277 ~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 277 MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 12234577889999999999999999999999988653
No 125
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.84 E-value=3.4e-21 Score=196.17 Aligned_cols=204 Identities=26% Similarity=0.354 Sum_probs=135.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. .|..+|+|++.... ......+..|+..++ .+|+||+++|+|.+++.
T Consensus 48 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 126 (309)
T 3p86_A 48 GSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLH 126 (309)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHH
T ss_pred CCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHh
Confidence 46899999987 57889999986443 223345667776644 26899999999999987
Q ss_pred cCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 465 SSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 465 ~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
... ..+++..+..++.++++||+|||.. .++|+||||||+||+++.++.+||+|||+++..........
T Consensus 127 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y 205 (309)
T 3p86_A 127 KSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEW 205 (309)
T ss_dssp STTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTT
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccc
Confidence 633 2489999999999999999999942 23499999999999999999999999999986543321100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ........+.. ..... +.+..+..
T Consensus 206 ~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~--~~~~~~~~~~~--~~~~~---------------~~~~~~~~ 266 (309)
T 3p86_A 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL--NPAQVVAAVGF--KCKRL---------------EIPRNLNP 266 (309)
T ss_dssp SCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS--CHHHHHHHHHH--SCCCC---------------CCCTTSCH
T ss_pred cChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHh--cCCCC---------------CCCccCCH
Confidence 01123367777 5 777776431 11111111110 00000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+++.+|++.+|++||++.||++.|+.+...
T Consensus 267 ~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 267 QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999988654
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.5e-22 Score=225.75 Aligned_cols=344 Identities=14% Similarity=0.133 Sum_probs=213.1
Q ss_pred CcEEEEEeCCCCCc---ccCCcC------------CCCCCCCCEEeccCCcCCccCCcccc-CCcccceeeccCC-cCCC
Q 041082 52 YRVTTLNISGLSLT---STIPSE------------LGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNN-TLFG 114 (639)
Q Consensus 52 ~~v~~L~L~~~~l~---~~~p~~------------l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~ 114 (639)
.+++.|+++++... +..|.. ...+++|++|+|++|.+++..+..+. .+++|+.|++++| .+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 35778888876532 122222 23577899999999988877776775 6889999999988 4433
Q ss_pred C-CCccccCCCCCcEEecccccCccccCccc----cCCCCCCEEecCCCC--CCC-------CCCCCccEEEccCCccCc
Q 041082 115 E-IPEELGNLAELETLWLQNNFLTGTIHSSI----FNLSSLSDLDLSHNN--LTD-------VQIPNLENLLLWGNNFSG 180 (639)
Q Consensus 115 ~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~Ls~N~--l~~-------~~l~~L~~L~L~~N~l~~ 180 (639)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|+.|++++|. ++. ..+++|+.|+|++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 44445578999999999998876544433 367789999999886 322 125889999999883323
Q ss_pred cCCccccCCCCCcEEEcccCC--------------------------Ccc----cCccccCCCCCCCEEEccCCCCCCCC
Q 041082 181 AIPHFIFNASKLSILELQKNS--------------------------FFD----LIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 181 ~~p~~~~~l~~L~~L~L~~N~--------------------------l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
.+|..+..+++|+.|+++.+. +.. .++..+..+++|++|++++|.++..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~- 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY- 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH-
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH-
Confidence 366666677777777755442 111 1222233567888888888875531
Q ss_pred CcchhhccccCCcchhhhccCccEEEeecCccccc-cchhhcCCCCCCEEECC---------CCCCCcccccccc-CCcC
Q 041082 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG-ILEEISNLTNLTAIYLA---------GNKLNGSIPITLC-KLQK 299 (639)
Q Consensus 231 ~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~-~~~~~~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l~~ 299 (639)
.... +....++|+.|++++| +... ++.....+++|+.|+++ .+.+++.....+. .+++
T Consensus 305 ---~l~~-------~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 305 ---DLVK-------LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ---HHHH-------HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred ---HHHH-------HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 0000 0112346777777776 3322 22223347778888773 3444433222222 3677
Q ss_pred CcEEEccCCcCCCCCchhhc-CCCCCcEEECC--C----CcCcccC-----CccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 300 LQLLSFVDNKLEGPIPYEFC-RLASLYELDLS--G----NKLSGSI-----PTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 300 L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
|+.|.+..|++++.....+. .+++|+.|+++ + |.++... +..+..+++|+.|++++ .+++..+..+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 77777777777655444443 46778888877 3 4444211 12245667778888866 55555444444
Q ss_pred c-CCCCcEEEcccCCCCCCCcccc-ccccccccccccCCCCCC
Q 041082 368 N-LKDILYLNLSSNFFISPLPLEI-GNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 368 ~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~l~ls~N~l~g 408 (639)
. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 4 6777888888777655444444 556777778888777743
No 127
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.84 E-value=3.9e-21 Score=208.66 Aligned_cols=198 Identities=21% Similarity=0.355 Sum_probs=145.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..||||.+..... ....|..|+..++. +|+||+++|+|.+++..
T Consensus 231 G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~ 309 (495)
T 1opk_A 231 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 309 (495)
T ss_dssp GTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred CCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHh
Confidence 4689999999865 78999999875432 34567777777543 68999999999999875
Q ss_pred -CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc--------
Q 041082 466 -SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ-------- 535 (639)
Q Consensus 466 -~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~-------- 535 (639)
....+++..+..|+.++|+||+||| ..+|+||||||+|||++.++.+||+|||+++......... ..
T Consensus 310 ~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~ 386 (495)
T 1opk_A 310 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 386 (495)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGC
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCccee
Confidence 3346899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred -------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | | |+.|.... ....+.+.+..... ...+..+..
T Consensus 387 aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~ 446 (495)
T 1opk_A 387 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYR------------------MERPEGCPE 446 (495)
T ss_dssp CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCC------------------CCCCTTCCH
T ss_pred CHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCCCCH
Confidence 0112378888 6 6 77776532 11122222221110 011122344
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+++.+|++.+|++||+|.+|+++|+.+
T Consensus 447 ~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 447 KVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 677889999999999999999999999886
No 128
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.84 E-value=7.6e-22 Score=211.77 Aligned_cols=198 Identities=26% Similarity=0.348 Sum_probs=143.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +..+|||.+.... ....|..|+..++ .+|+||+++|+|.+++..
T Consensus 204 G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~ 280 (450)
T 1k9a_A 204 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 280 (450)
T ss_dssp CSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHH
T ss_pred cCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHh
Confidence 468999999886 6799999987543 3456777777743 268999999999999976
Q ss_pred CC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c--------
Q 041082 466 SN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T-------- 534 (639)
Q Consensus 466 ~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~-------- 534 (639)
.. ..+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 281 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~ 357 (450)
T 1k9a_A 281 RGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 357 (450)
T ss_dssp HCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHH
Confidence 33 34799999999999999999999 5689999999999999999999999999998654321110 0
Q ss_pred --ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 --QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 --~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.++||| | | |+.|..... ...+...+..... ...+..+...+.+
T Consensus 358 ~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~~~~------------------~~~p~~~~~~l~~ 417 (450)
T 1k9a_A 358 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEKGYK------------------MDAPDGCPPAVYD 417 (450)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--TTTHHHHHHTTCC------------------CCCCTTCCHHHHH
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCC------------------CCCCCcCCHHHHH
Confidence 01123378888 6 5 777765321 1122222221100 0111233456778
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
++..|++.+|++|||+.++++.|+.+..
T Consensus 418 li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 418 VMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 8999999999999999999999998865
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.1e-20 Score=180.31 Aligned_cols=164 Identities=24% Similarity=0.267 Sum_probs=139.2
Q ss_pred CCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC
Q 041082 33 WNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112 (639)
Q Consensus 33 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 112 (639)
|....+.|+|.+|.|+.. +++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 667789999999999752 233 4666554 8999999999999998899999999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCC
Q 041082 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKL 192 (639)
Q Consensus 113 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 192 (639)
....+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.|+ .+|..+..+++|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------------~lp~~~~~l~~L 137 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-------------------ELPRGIERLTHL 137 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------SCCTTGGGCTTC
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-------------------ccCcccccCCCC
Confidence 8777778899999999999999999887777888888887777777665 456667788899
Q ss_pred cEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCC
Q 041082 193 SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
+.|+|++|++.+..+..|..+++|+.|++++|.+....
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999998888788999999999999999887643
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.3e-20 Score=195.41 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCcCccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCc-cccCCcccce-ee
Q 041082 38 TVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLS-IY 106 (639)
Q Consensus 38 ~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~-L~ 106 (639)
+.|.|..|.|+... ..++.|+|++|.|+...+..|.++++|++|+|++|.+.+.+|. .|.++++|+. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 44678788886421 2345555555555543334455555555555555555443432 3445554443 33
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC-CCCCCCC------C-CCccEEEccCCcc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH-NNLTDVQ------I-PNLENLLLWGNNF 178 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~------l-~~L~~L~L~~N~l 178 (639)
++.|++....|..|..+++|++|++++|++++..+..+....++..|++.. |.++.+. + ..++.|+|++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 444555555555555555555555555555544444444444455555432 3333321 1 2344555555555
Q ss_pred CccCCccccCCCCCcEEEccc-CCCcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 179 SGAIPHFIFNASKLSILELQK-NSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+. +|...+...+|+.+++++ |.+..+.++.|+.+++|++|++++|+++..
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 43 222223334455555543 333333334455555555555555555443
No 131
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.84 E-value=4.2e-22 Score=202.19 Aligned_cols=210 Identities=22% Similarity=0.336 Sum_probs=130.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... +..+|||++..... ..+..+.+.+. .+|+||+++|+|.
T Consensus 14 G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 89 (303)
T 3gxj_A 14 GRFGEVWRGKWR-GEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLF 89 (303)
T ss_dssp CSSSEEEEC-CT-TSCEEEEECC-TTH---HHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEEEEECCTTCCHH
T ss_pred CCCeEEEEEEEc-CcceEEEEecccch---hhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEEEEeccCCCCHH
Confidence 568999998875 88999999864332 33344444321 3789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
+++.. ..+++..+.+++.++|.||+|||... ..+|+||||||+||+++.++.+||+|||+|+.........
T Consensus 90 ~~l~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a~~~~~~~~~~~~ 167 (303)
T 3gxj_A 90 DYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 167 (303)
T ss_dssp HHHHH--CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-CCEETTTTEESC
T ss_pred HHHhc--cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcceeccCCCccccc
Confidence 99864 35788888999999999999999432 5689999999999999999999999999997654332110
Q ss_pred -------c------cc----------ccccccccc--c-------CCCC----------CCCccCCCccchHHHHHhhCC
Q 041082 534 -------T------QN----------TNTCHHRIY--G-------TRRN----------PQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 534 -------~------~~----------~~~~~~dvy--G-------tg~~----------p~~~~~~~~~~l~~~~~~~~~ 571 (639)
+ .. ..+.++||| | ||+. |..+.........++......
T Consensus 168 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 247 (303)
T 3gxj_A 168 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE 247 (303)
T ss_dssp C-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTT
T ss_pred ccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCCccHHHHHHHHHH
Confidence 0 00 011257888 6 6633 222111111111011110000
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
. ...+.+.. .....++...+.+++.+|++.+|++|||+.||+++|+++.+.
T Consensus 248 ~----~~~~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 248 Q----KLRPNIPN-----RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp S----CCCCCCCG-----GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred h----hcCCCccc-----cccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 0 11111110 011236677899999999999999999999999999988644
No 132
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.84 E-value=2.9e-21 Score=198.40 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=140.3
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+. .+++|.+.... ......+..|+..++. +|++|+++|+|.+
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~g~L~~ 105 (327)
T 3poz_A 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 105 (327)
T ss_dssp ETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCcHHH
Confidence 468999999854 444 35778775332 2334567777766543 6889999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+......... ..
T Consensus 106 ~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t 182 (327)
T 3poz_A 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 182 (327)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCcc
Confidence 99876667999999999999999999999 5689999999999999999999999999998765432210 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+...+...... ..+.
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~ 242 (327)
T 3poz_A 183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERL------------------PQPP 242 (327)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCC------------------CCCT
T ss_pred ccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC--CHHHHHHHHHcCCCC------------------CCCc
Confidence 0112378888 6 6 77777532 122233332211100 0011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++.+|++.+|++||+|.||+++|+.+...
T Consensus 243 ~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 243 ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 2234577899999999999999999999999987643
No 133
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.84 E-value=3.9e-21 Score=195.59 Aligned_cols=206 Identities=23% Similarity=0.381 Sum_probs=141.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... .+++|.+.... ......+..|+..++ .+|+||+++|+|.+++..
T Consensus 47 G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 124 (307)
T 3lb7_A 47 GSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHV 124 (307)
T ss_dssp CSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHHHHHT
T ss_pred CCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCcEEEEEecCCCCcHHHHHHh
Confidence 5689999998653 57888775432 223456777777643 268999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------- 532 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------- 532 (639)
....+++.++..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+........
T Consensus 125 ~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~gt~~y~ 201 (307)
T 3lb7_A 125 QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWM 201 (307)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------------CCCCTTSC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccccccccCCCCCcceE
Confidence 6667999999999999999999999 567999999999999999999999999999865321100
Q ss_pred cc-------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 FT-------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 ~~-------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+ ....+.++||| | ||+.|...... ...+...+..... .+.+.. ....+
T Consensus 202 aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~-~~~~~~~~~~~~~-------~~~~~~-------~~~~~ 266 (307)
T 3lb7_A 202 APEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RDQIIFMVGRGYA-------SPDLSK-------LYKNC 266 (307)
T ss_dssp CHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHHHTCC-------CCCSTT-------SCSSS
T ss_pred CcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCc-HHHHHHHHhcCCC-------Ccchhh-------hhcCC
Confidence 00 00112367888 6 78877753211 1111111111111 111100 01123
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+.+++..|++.+|++||++.||++.|+.+...+
T Consensus 267 ~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 267 PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 345778889999999999999999999999887654
No 134
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.84 E-value=8e-21 Score=194.56 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=139.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..||||++..........+..|+..++ .+||||+++|+|.+++..
T Consensus 56 G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 135 (321)
T 2c30_A 56 GSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ 135 (321)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT
T ss_pred CCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh
Confidence 468999999876 68999999998765555566777777643 278999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 136 --~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP 210 (321)
T 2c30_A 136 --VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP 210 (321)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCH
Confidence 35899999999999999999999 568999999999999999999999999999876543211000
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|.... ........+....+ +.+.. .......+.
T Consensus 211 E~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~l~ 272 (321)
T 2c30_A 211 EVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD--SPVQAMKRLRDSPP--------PKLKN--------SHKVSPVLR 272 (321)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSSC--------CCCTT--------GGGSCHHHH
T ss_pred hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhcCCC--------CCcCc--------cccCCHHHH
Confidence 1122367888 6 788776531 11111111211111 11100 011123466
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||++.|+++
T Consensus 273 ~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 273 DFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHccCChhhCcCHHHHhc
Confidence 7888999999999999999986
No 135
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.84 E-value=3e-21 Score=207.25 Aligned_cols=199 Identities=23% Similarity=0.371 Sum_probs=141.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++...++..+|||.+..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 195 G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~gsL~~~l~~~~ 273 (452)
T 1fmk_A 195 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGET 273 (452)
T ss_dssp CSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHH
T ss_pred CCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCCCHHHHHHhcC
Confidence 468999999998888899999875432 23567777777543 689999999999999752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------------ 534 (639)
...+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 274 ~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aP 350 (452)
T 1fmk_A 274 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCH
Confidence 245899999999999999999999 56899999999999999999999999999987653321100
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... .-.+.......... ...+..+...+
T Consensus 351 E~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~-----~~~~~~~~i~~~~~---------------~~~~~~~~~~l 410 (452)
T 1fmk_A 351 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGYR---------------MPCPPECPESL 410 (452)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCC---------------CCCCTTSCHHH
T ss_pred hHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCC---------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 77776531 11111111111100 01112334467
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+++.+|++.+|++||||.++++.|+.+.
T Consensus 411 ~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 411 HDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 78999999999999999999999998764
No 136
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=200.92 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=140.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++.. .+..+|||++...... .+..+.++. ..+|+||+++|+|
T Consensus 24 G~~g~Vy~~~~-~~~~vavK~~~~~~~~---~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L 99 (336)
T 3g2f_A 24 GRYGAVYKGSL-DERPVAVKVFSFANRQ---NFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSL 99 (336)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEEEGGGHH---HHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBH
T ss_pred CCCeEEEEEEE-CCeEEEEEEeeccchh---hHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcH
Confidence 56899999976 5789999998754322 222232221 0378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccC------CCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGY------STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~------~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
.+++... ..+|..+.+|+.++++||+|||..+ .++|+||||||+||+++.++.+||+|||+++.+......
T Consensus 100 ~~~l~~~--~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~ 177 (336)
T 3g2f_A 100 XKYLSLH--TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVR 177 (336)
T ss_dssp HHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC-
T ss_pred HHHHhhc--ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccC
Confidence 9998643 3589999999999999999999542 228999999999999999999999999999876432110
Q ss_pred ------------c------cc-----------cccccccccc--c-------CCCCCCCccCCC-c--c----------c
Q 041082 533 ------------F------TQ-----------NTNTCHHRIY--G-------TRRNPQMNFFSG-E--M----------T 561 (639)
Q Consensus 533 ------------~------~~-----------~~~~~~~dvy--G-------tg~~p~~~~~~~-~--~----------~ 561 (639)
. +. ...+.++||| | ||+.|....... . . .
T Consensus 178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 257 (336)
T 3g2f_A 178 PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPT 257 (336)
T ss_dssp --------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCC
T ss_pred ccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCch
Confidence 0 00 0011257888 6 665543221110 0 0 0
Q ss_pred hHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHhh
Q 041082 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 562 l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
..++......... .+.+.. .......+...+.+++.+|++.+|++|||+.||+++|+++...+.++-
T Consensus 258 ~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~ 324 (336)
T 3g2f_A 258 FEDMQVLVSREKQ----RPKFPE----AWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK 324 (336)
T ss_dssp HHHHHHHHTTSCC----CCCCCT----TCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhhhccccc----CCCCCc----ccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence 0000000000000 000000 011123456678999999999999999999999999999987765543
No 137
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=197.79 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=148.3
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. ..+..+|+|.+..........+..|+..++ .+|+||+++|+|
T Consensus 52 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L 131 (326)
T 2w1i_A 52 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 131 (326)
T ss_dssp CSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBH
T ss_pred CCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCH
Confidence 46889999974 357899999987655555566777777643 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~- 535 (639)
.+++......+++..+.+++.++++||+||| ..+|+||||||.||+++.++.+||+|||+++........ ...
T Consensus 132 ~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~ 208 (326)
T 2w1i_A 132 RDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPG 208 (326)
T ss_dssp HHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCC
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCC
Confidence 9999765556899999999999999999999 568999999999999999999999999999876543211 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc--------ceeeeccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV--------MEVVDVNLLS 584 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~--------~~~~d~~l~~ 584 (639)
...+.++||| | ||+.|.... ..++......... .+.+....
T Consensus 209 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 280 (326)
T 2w1i_A 209 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP------PAEFMRMIGNDKQGQMIVFHLIELLKNNG-- 280 (326)
T ss_dssp SCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH------HHHHHHHHCTTCCTHHHHHHHHHHHHTTC--
T ss_pred CCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC------HHHHHHhhccccchhhhHHHHHHHhhcCC--
Confidence 0112368888 6 777665421 0111111000000 00000000
Q ss_pred cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 585 MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+..+...+.+++.+|++.+|++||++.||+++|+.+++.+
T Consensus 281 ----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 281 ----RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp ----CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 00111223456778999999999999999999999999998765
No 138
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.83 E-value=2.7e-20 Score=192.35 Aligned_cols=210 Identities=22% Similarity=0.325 Sum_probs=146.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .+..+|+|.+..... ..+..|.+.++ .+|+||+++|+|.
T Consensus 53 G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 128 (342)
T 1b6c_B 53 GRFGEVWRGKW-RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLF 128 (342)
T ss_dssp ETTEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHH
T ss_pred CCCcEEEEEEE-cCccEEEEEeCchhH---HHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHH
Confidence 46889999987 488999999865432 33444444321 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+++.. ..+++..+.+++.++|+||+|||... ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 129 ~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~ 206 (342)
T 1b6c_B 129 DYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 206 (342)
T ss_dssp HHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEE
T ss_pred HHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceecccccccccc
Confidence 99864 35899999999999999999999432 468999999999999999999999999999766543210
Q ss_pred ------c------ccc----------ccccccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 533 ------F------TQN----------TNTCHHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 533 ------~------~~~----------~~~~~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
. +.. ..+.++||| | || ..|.............+......
T Consensus 207 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 286 (342)
T 1b6c_B 207 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE 286 (342)
T ss_dssp CCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred ccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHH
Confidence 0 000 011367888 6 77 44544333233334444333222
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
... .+.+... ....++...+.+++.+|++.+|++||++.||+++|+++.+.
T Consensus 287 ~~~----~~~~~~~-----~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 287 QKL----RPNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SCC----CCCCCGG-----GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHh----CCCCccc-----ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 211 1111110 01235677889999999999999999999999999998654
No 139
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.83 E-value=6.7e-21 Score=191.44 Aligned_cols=200 Identities=23% Similarity=0.356 Sum_probs=142.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 35 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 113 (283)
T 3gen_A 35 GQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM 113 (283)
T ss_dssp --CEEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCG
T ss_pred CCCceEEEEEEcCCCeEEEEEecCCCCC-HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHh
Confidence 4688999999998889999998754322 345667776643 2689999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++.++..++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........ . +
T Consensus 114 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 190 (283)
T 3gen_A 114 RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 190 (283)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCH
Confidence 556999999999999999999999 568999999999999999999999999999866432110 0 0
Q ss_pred ----ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | | |+.|.... .-.+........ .....+. .....+
T Consensus 191 E~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~-----~~~~~~~~~~~~--~~~~~~~-------------~~~~~l 250 (283)
T 3gen_A 191 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-----TNSETAEHIAQG--LRLYRPH-------------LASEKV 250 (283)
T ss_dssp HHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTT--CCCCCCT-------------TCCHHH
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc-----ChhHHHHHHhcc--cCCCCCC-------------cCCHHH
Confidence 01123367888 6 6 77776531 111111111110 0000111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++..|++.+|++||++.|+++.|+++.+
T Consensus 251 ~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 251 YTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 778899999999999999999999998864
No 140
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.83 E-value=4.9e-21 Score=199.45 Aligned_cols=203 Identities=20% Similarity=0.295 Sum_probs=140.9
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|||++..... .....+..|+.+++ .+|+||+++|
T Consensus 33 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g 112 (359)
T 3vhe_A 33 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 112 (359)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTE
T ss_pred CCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCC
Confidence 56899999974 3457899999875432 22345666666533 2679999999
Q ss_pred CchhccccCC-----------------------------------------------------------------ccCCH
Q 041082 458 SLEKCLYSSN-----------------------------------------------------------------YILDI 472 (639)
Q Consensus 458 sL~~~l~~~~-----------------------------------------------------------------~~l~~ 472 (639)
+|.+++.... ..+++
T Consensus 113 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (359)
T 3vhe_A 113 NLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTL 192 (359)
T ss_dssp EHHHHHHTTTTSBCSCC------------------------------------------------------CTTTTCBCH
T ss_pred cHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCH
Confidence 9999886522 12889
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--ccc---------------
Q 041082 473 FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQ--------------- 535 (639)
Q Consensus 473 ~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~--------------- 535 (639)
..+.+++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 193 ~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 269 (359)
T 3vhe_A 193 EHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD 269 (359)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcC
Confidence 999999999999999999 568999999999999999999999999999866433211 000
Q ss_pred cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 536 NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 536 ~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...+.++||| | | |+.|....... ..+...+....... . +..+...+.+++.
T Consensus 270 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~-----~-------------~~~~~~~l~~li~ 330 (359)
T 3vhe_A 270 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-----A-------------PDYTTPEMYQTML 330 (359)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCC-----C-------------CTTCCHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHHHHcCCCCC-----C-------------CCCCCHHHHHHHH
Confidence 1122378888 6 6 77776532111 11111111111000 0 0112234677889
Q ss_pred hccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 606 ECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.|++.+|++||+|.||+++|+++..+
T Consensus 331 ~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 331 DCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHccCChhhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988654
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=9.5e-20 Score=188.89 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=79.5
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCc-cccCCCCCcE-Eeccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPE-ELGNLAELET-LWLQN 133 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~-L~L~~ 133 (639)
.++.++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.++++|++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4678888887 5677663 6889999999999865556788899999999999988776654 5788888765 66677
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|+++...|..|..+++|++|++++|.++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred CcccccCchhhhhcccccccccccccccc
Confidence 88887777778877777777766666553
No 142
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.83 E-value=8.5e-22 Score=196.31 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=144.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|.+...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 19 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 97 (268)
T 3sxs_A 19 GQFGVVKLGKWKGQYDVAVKMIKEGSMS-EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH 97 (268)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECBTTBC-HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHH
T ss_pred CCCceEEEEEecCceeEEEEEeccCCCc-HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHc
Confidence 4688999999988889999998754322 345666666643 2789999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc--------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ-------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~-------- 535 (639)
...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 98 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 174 (268)
T 3sxs_A 98 GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAP 174 (268)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCH
Confidence 556899999999999999999999 5689999999999999999999999999998665432110 00
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | | |+.|.... .-.+......... ....+. .....+
T Consensus 175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~--~~~~~~-------------~~~~~l 234 (268)
T 3sxs_A 175 EVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY-----TNSEVVLKVSQGH--RLYRPH-------------LASDTI 234 (268)
T ss_dssp HHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTTC--CCCCCT-------------TSCHHH
T ss_pred HHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc-----ChHHHHHHHHcCC--CCCCCC-------------cChHHH
Confidence 0122378888 6 6 77776421 1111111111110 011111 112246
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+++..|++.+|++|||+.|+++.|+.+++.
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 235 YQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 7788999999999999999999999988654
No 143
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=197.67 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=141.6
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..... .....+..|++.++. +|+||+++
T Consensus 80 G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 159 (382)
T 3tt0_A 80 GAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 159 (382)
T ss_dssp CSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred CCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCC
Confidence 568999999853 235799999865432 233456666666432 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..+++..+.+|+.++++||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 160 g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DFG 236 (382)
T 3tt0_A 160 GNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFG 236 (382)
T ss_dssp CBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSCS
T ss_pred CcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEcCCCcEEEcccC
Confidence 99999886422 35899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+|+........ ... ...+.++||| | | |+.|.... ....+.+.+......
T Consensus 237 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~-- 312 (382)
T 3tt0_A 237 LARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--PVEELFKLLKEGHRM-- 312 (382)
T ss_dssp CCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCCC--
T ss_pred cccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCCC--
Confidence 99876543211 000 0112368888 6 6 77776531 111122222111100
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+ .+..+...+.+++..|++.+|++||+|.||++.|+++...
T Consensus 313 -~---------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 353 (382)
T 3tt0_A 313 -D---------------KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 353 (382)
T ss_dssp -C---------------CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -C---------------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 0 0111233577888999999999999999999999988654
No 144
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=192.34 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=138.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH------------------hhhhhcCCCCCchhccccCC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------KLVLEYMPHGSLEKCLYSSN- 467 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------~Lv~ey~~~gsL~~~l~~~~- 467 (639)
.++|.||++... +..+|+|.+... .....|..|+..++ .+|+||+++|+|.+++....
T Consensus 19 G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~ 95 (307)
T 2eva_A 19 GAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEP 95 (307)
T ss_dssp CSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSS
T ss_pred CCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCC
Confidence 468999999875 678999998643 23356667776643 26899999999999987633
Q ss_pred -ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-eeeccccccccccccCCC--c------c---
Q 041082 468 -YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-AHLSDFGMAKLLLKEDQS--F------T--- 534 (639)
Q Consensus 468 -~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-~~i~dfgla~~~~~~~~~--~------~--- 534 (639)
..+++..+.+++.++++||+|||+....+|+||||||+||+++.++. +||+|||+++........ . +
T Consensus 96 ~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~ 175 (307)
T 2eva_A 96 LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVF 175 (307)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhh
Confidence 24789999999999999999999644478999999999999998876 799999999765432111 0 0
Q ss_pred -ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHH
Q 041082 535 -QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604 (639)
Q Consensus 535 -~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~ 604 (639)
....+.++||| | ||+.|..........+ .|... .... +.. ...+...+.+++
T Consensus 176 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~--~~~~-----~~~----------~~~~~~~l~~li 237 (307)
T 2eva_A 176 EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-MWAVH--NGTR-----PPL----------IKNLPKPIESLM 237 (307)
T ss_dssp TCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH-HHHHH--TTCC-----CCC----------BTTCCHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH-HHHHh--cCCC-----CCc----------ccccCHHHHHHH
Confidence 01123478888 6 8888876422111111 11111 0000 000 011223467788
Q ss_pred hhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 605 MECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 605 ~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+|++.+|++||||.||+++|+.+.+.
T Consensus 238 ~~~l~~dp~~Rps~~ell~~L~~~~~~ 264 (307)
T 2eva_A 238 TRCWSKDPSQRPSMEEIVKIMTHLMRY 264 (307)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHGGG
T ss_pred HHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999988643
No 145
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.83 E-value=1.2e-20 Score=193.72 Aligned_cols=202 Identities=22% Similarity=0.318 Sum_probs=139.9
Q ss_pred CCcCcceEEEec-CCce----eeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK----VAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+.. +++|.+.... ......+..++..++ .+|+||+++|+|.+
T Consensus 24 G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~ 103 (325)
T 3kex_A 24 GVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLD 103 (325)
T ss_dssp CSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECCTTCBSHH
T ss_pred cCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeCCCCCHHH
Confidence 568999999864 4444 6777764332 222334445555432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 104 ~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 180 (325)
T 3kex_A 104 HVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTP 180 (325)
T ss_dssp HHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CC
T ss_pred HHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCc
Confidence 98765557899999999999999999999 5679999999999999999999999999998775432210 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|....- ...+.+.+..... ...+.
T Consensus 181 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~~~-----~~~~~------------- 240 (325)
T 3kex_A 181 IKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR--LAEVPDLLEKGER-----LAQPQ------------- 240 (325)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--TTHHHHHHHTTCB-----CCCCT-------------
T ss_pred ccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC--HHHHHHHHHcCCC-----CCCCC-------------
Confidence 1123378888 6 7 888876421 1222222221110 00010
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||++.||+++|+++...
T Consensus 241 ~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 241 ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 1112356688899999999999999999999987543
No 146
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=215.79 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=147.6
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||++... .+..||||++..... .....|..|+.+++. +||||+++|+|.+++
T Consensus 347 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L~~~l 426 (613)
T 2ozo_A 347 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFL 426 (613)
T ss_dssp CSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHH
T ss_pred CCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcHHHHH
Confidence 468999999874 456799999875432 234677788877542 789999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......+++..+..|+.+||+||+||| ..+|+||||||+|||++.++.+||+|||+|+.+....... ..
T Consensus 427 ~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~ 503 (613)
T 2ozo_A 427 VGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 503 (613)
T ss_dssp TTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CC
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCcc
Confidence 766667999999999999999999999 5689999999999999999999999999998765332110 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | | |+.|.... ....+.+.+..... ...+..
T Consensus 504 ~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~~~~~------------------~~~p~~ 563 (613)
T 2ozo_A 504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGKR------------------MECPPE 563 (613)
T ss_dssp TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CSHHHHHHHHTTCC------------------CCCCTT
T ss_pred ceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCc
Confidence 1122378888 6 6 77776532 12222222221100 011123
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+...+.+++..||+.+|++||+|.+|+++|+.+....
T Consensus 564 ~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~ 600 (613)
T 2ozo_A 564 CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 600 (613)
T ss_dssp CCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999876554
No 147
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.83 E-value=1.3e-20 Score=189.76 Aligned_cols=204 Identities=25% Similarity=0.428 Sum_probs=141.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-------hhhHHHHHHHHH------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-------FKSFDVACDMMK------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-------~~~f~~e~~~~~------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .++..+|+|.+....... ...+..|+..++ .+|+||+++|+|.
T Consensus 30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~lv~e~~~~~~L~ 109 (287)
T 4f0f_A 30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLY 109 (287)
T ss_dssp CSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEEEEECCTTCBHH
T ss_pred CCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeEEEEecCCCCHH
Confidence 46899999987 468899999986443221 245667776643 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~--- 532 (639)
+.+......+++..+..++.+++.||+|||.. .++|+||||||+||+++.++. +||+|||+++........
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g 188 (287)
T 4f0f_A 110 HRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLG 188 (287)
T ss_dssp HHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCC
T ss_pred HHHhcccCCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCC
Confidence 98876666799999999999999999999932 233999999999999988776 999999999855432111
Q ss_pred -----cccc------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 -----FTQN------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 -----~~~~------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+.. ..+.++||| | ||+.|..............+.. ... .+.+
T Consensus 189 ~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~---~~~----~~~~---------- 251 (287)
T 4f0f_A 189 NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE---EGL----RPTI---------- 251 (287)
T ss_dssp CCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHH---SCC----CCCC----------
T ss_pred CccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhc---cCC----CCCC----------
Confidence 1111 112367888 6 7887775422221111111111 100 0000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+..+...+.+++..|++.+|++||++.||+++|+++
T Consensus 252 ~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 252 PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 112234577888999999999999999999999753
No 148
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.83 E-value=3.2e-21 Score=198.16 Aligned_cols=210 Identities=24% Similarity=0.329 Sum_probs=145.5
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. ..+..+|+|++..........+..|++.++ .+|+||+++|+|
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L 113 (327)
T 3lxl_A 34 GNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCL 113 (327)
T ss_dssp ETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBH
T ss_pred CCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCH
Confidence 46889999984 467899999997665555566777777743 278999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~- 535 (639)
.+++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 114 ~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 190 (327)
T 3lxl_A 114 RDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPG 190 (327)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCC
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccC
Confidence 9998764456899999999999999999999 668999999999999999999999999999876533211 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC-C---c---ceeeecccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI-S---V---MEVVDVNLLSM 585 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~-~---~---~~~~d~~l~~~ 585 (639)
...+.+.||| | ||+.|..... .++....... . . .+.+.....
T Consensus 191 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (327)
T 3lxl_A 191 QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS------AEFLRMMGCERDVPALSRLLELLEEGQR-- 262 (327)
T ss_dssp CSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHCC----CCHHHHHHHHHHTTCC--
T ss_pred CccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc------chhhhhcccccccccHHHHHHHhhcccC--
Confidence 0112378888 6 7877754211 0111100000 0 0 000100000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+..+...+.+++..|++.+|++|||+.|++++|+.+...
T Consensus 263 ----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 263 ----LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred ----CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 011123345677889999999999999999999999988643
No 149
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.82 E-value=2.6e-20 Score=186.91 Aligned_cols=206 Identities=19% Similarity=0.332 Sum_probs=143.7
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|.+.... ......+..|+..++. +|+||+++|+|.++
T Consensus 23 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~ 102 (281)
T 3cc6_A 23 GFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHY 102 (281)
T ss_dssp CSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEEEECCTTCBHHHH
T ss_pred cCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEEEecCCCCCHHHH
Confidence 4689999998643 2469999986542 2234556666666432 68999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~-- 534 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ .+
T Consensus 103 l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 179 (281)
T 3cc6_A 103 LERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIK 179 (281)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGG
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcc
Confidence 8765556899999999999999999999 668999999999999999999999999999876543211 00
Q ss_pred ----c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ----Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ----~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++||| | | |+.|.... ....+.+.+....... . +..+
T Consensus 180 y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~--~~~~~~~~~~~~~~~~-----~-------------~~~~ 239 (281)
T 3cc6_A 180 WMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--ENKDVIGVLEKGDRLP-----K-------------PDLC 239 (281)
T ss_dssp GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CGGGHHHHHHHTCCCC-----C-------------CTTC
T ss_pred eeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC--ChHHHHHHHhcCCCCC-----C-------------CCCC
Confidence 0 1112368888 6 6 88776532 1222222222111000 0 0112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
...+.+++.+|++.+|++||++.|+++.|+.+.+.....
T Consensus 240 ~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~i 278 (281)
T 3cc6_A 240 PPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDI 278 (281)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhhhh
Confidence 234677889999999999999999999999997765443
No 150
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.82 E-value=1.6e-20 Score=190.05 Aligned_cols=194 Identities=24% Similarity=0.322 Sum_probs=136.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..+..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 31 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 110 (297)
T 3fxz_A 31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 110 (297)
T ss_dssp ETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhh
Confidence 46899999974 568899999997665555556666776643 278999999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
. .+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 111 ~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP 185 (297)
T 3fxz_A 111 T--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185 (297)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred c--CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccCh
Confidence 3 5889999999999999999999 568999999999999999999999999999876543321110
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|...... ...+........+. . ..+......+.
T Consensus 186 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~ 247 (297)
T 3fxz_A 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-LRALYLIATNGTPE----L-------------QNPEKLSAIFR 247 (297)
T ss_dssp HHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHHCSCC----C-------------SCGGGSCHHHH
T ss_pred hhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhCCCCC----C-------------CCccccCHHHH
Confidence 0112367888 6 77777643100 00000011100000 0 00112223467
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++|||+.|+++
T Consensus 248 ~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 248 DFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHccCChhHCcCHHHHhh
Confidence 7888999999999999999985
No 151
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.82 E-value=9.6e-21 Score=195.87 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=142.9
Q ss_pred CCcCcceEEEecC------CceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++...+ +..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 58 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 137 (343)
T 1luf_A 58 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137 (343)
T ss_dssp CSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred cCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcH
Confidence 4689999998753 4789999987543 223456777777754 268999999999
Q ss_pred hhccccC-----------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSS-----------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+++... ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~k 214 (343)
T 1luf_A 138 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVK 214 (343)
T ss_dssp HHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEE
T ss_pred HHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEECCCCeEE
Confidence 9988642 146899999999999999999999 56899999999999999999999
Q ss_pred eccccccccccccCCC--c-----c------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQS--F-----T------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~--~-----~------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++........ . + . ...+.++||| | | |+.|.... .-.+.....
T Consensus 215 l~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-----~~~~~~~~~ 289 (343)
T 1luf_A 215 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM-----AHEEVIYYV 289 (343)
T ss_dssp ECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHH
T ss_pred EeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC-----ChHHHHHHH
Confidence 9999999865432211 0 0 0 1122378888 6 6 77776531 111111111
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
....... .+..+...+.+++.+|++.+|++||++.+|++.|+++.+.+...
T Consensus 290 ~~~~~~~---------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~~ 340 (343)
T 1luf_A 290 RDGNILA---------------CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEGT 340 (343)
T ss_dssp HTTCCCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-----
T ss_pred hCCCcCC---------------CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhhh
Confidence 1111000 01122335778899999999999999999999999987766443
No 152
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=196.79 Aligned_cols=117 Identities=29% Similarity=0.421 Sum_probs=95.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.+||.||++.. ..|..||||++..... ...+.+..|+.+++ ++|||||+ |
T Consensus 65 G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g 143 (398)
T 4b99_A 65 GAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-S 143 (398)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-E
T ss_pred ccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-C
Confidence 56999999985 5689999999864432 22345666777643 37899996 7
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+++.. ...+++.....|+.+++.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+..
T Consensus 144 ~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~ 210 (398)
T 4b99_A 144 DLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT 210 (398)
T ss_dssp EHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC--
T ss_pred CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeeccc
Confidence 89888875 346899999999999999999999 67899999999999999999999999999987643
No 153
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.82 E-value=1.2e-20 Score=187.78 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=144.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|.+...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 19 G~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~ 97 (267)
T 3t9t_A 19 GQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQ 97 (267)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECTTTBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHT
T ss_pred CCceeEEEEEecCCCeEEEEEccccCCC-HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhC
Confidence 4688999999888889999998755332 345666776643 2689999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++..+..++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........ . +
T Consensus 98 ~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aP 174 (267)
T 3t9t_A 98 RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 174 (267)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccCh
Confidence 556899999999999999999999 567999999999999999999999999999865432100 0 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ...+.+....... ....+. .....+
T Consensus 175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~i~~~~--~~~~~~-------------~~~~~l 234 (267)
T 3t9t_A 175 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTGF--RLYKPR-------------LASTHV 234 (267)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTTC--CCCCCT-------------TSCHHH
T ss_pred hhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC-----CHHHHHHHHhcCC--cCCCCc-------------cCcHHH
Confidence 0 1123378888 6 6 77776531 1112211111110 001111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++.+|++.+|++||++.|++++|+++.+
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 235 YQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 778899999999999999999999998865
No 154
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.82 E-value=1.9e-20 Score=187.91 Aligned_cols=203 Identities=20% Similarity=0.297 Sum_probs=135.5
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|...... ......+..|+..++ .+|+||+++|+|.++
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~ 105 (281)
T 1mp8_A 26 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 105 (281)
T ss_dssp CSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHH
T ss_pred cCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCCCCCHHHH
Confidence 4689999998643 4569999876432 223345666666643 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ------ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~------ 535 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 106 l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 182 (281)
T 1mp8_A 106 LQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 182 (281)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGG
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCccc
Confidence 8765556899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred ---------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ---------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | | |+.|..... ...+...+...... .+ +..+
T Consensus 183 y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~i~~~~~~----~~--------------~~~~ 242 (281)
T 1mp8_A 183 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIENGERL----PM--------------PPNC 242 (281)
T ss_dssp GCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCCC----CC--------------CTTC
T ss_pred ccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHHHHcCCCC----CC--------------CCCC
Confidence 0112367888 6 4 777765321 12222222211100 00 1122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+.+++.+|++.+|++||++.|+++.|+.+.+..
T Consensus 243 ~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 243 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 335677889999999999999999999999886553
No 155
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.82 E-value=2.5e-20 Score=192.86 Aligned_cols=207 Identities=20% Similarity=0.264 Sum_probs=139.4
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhh-hhhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQY-ERAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++. +|+||+++|+
T Consensus 56 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~ 135 (344)
T 1rjb_A 56 GAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGD 135 (344)
T ss_dssp CSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred CCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCc
Confidence 46889999986 235689999986432 2233456666665432 6899999999
Q ss_pred chhccccCC----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 459 LEKCLYSSN----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 459 L~~~l~~~~----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
|.+++.... ..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 136 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~k 212 (344)
T 1rjb_A 136 LLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVK 212 (344)
T ss_dssp HHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTTEEE
T ss_pred HHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEEcCCCcEE
Confidence 999886532 23799999999999999999999 56899999999999999999999
Q ss_pred eccccccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++......... .. ...+.++||| | | |+.|..... ....+...+...
T Consensus 213 L~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-~~~~~~~~~~~~ 291 (344)
T 1rjb_A 213 ICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP-VDANFYKLIQNG 291 (344)
T ss_dssp ECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-CSHHHHHHHHTT
T ss_pred eCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC-cHHHHHHHHhcC
Confidence 99999998765432210 00 0122368888 6 6 777765421 111222222211
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
.... .+..+...+.+++.+|++.+|++||++.||++.|+.+.....+.
T Consensus 292 ~~~~------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 292 FKMD------------------QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred CCCC------------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 1100 00112235677889999999999999999999999987665443
No 156
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.1e-19 Score=198.50 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=139.9
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
+|++|+|++|.+++ +|..+. ++|+.|+|++|+++ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 776664 67888888888887 466 446788888888888876 555 443 55555555
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 236 (639)
+|. +++ +|. .+++|+.|++++|.+++ +|. .+++|++|+|++|.+++.+
T Consensus 129 ~N~------------------l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp------ 176 (571)
T 3cvr_A 129 NNQ------------------LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLP------ 176 (571)
T ss_dssp SSC------------------CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC------
T ss_pred CCc------------------CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcc------
Confidence 554 444 444 46899999999999987 454 5788999999998887632
Q ss_pred ccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCC-------cEEEccCCc
Q 041082 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKL-------QLLSFVDNK 309 (639)
Q Consensus 237 ~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~l~~N~ 309 (639)
. +. ++|+.|+|++|.|+ .+|. +.. +| +.|++++|+
T Consensus 177 -------------------------------~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 177 -------------------------------E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -------------------------------C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred -------------------------------h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 1 22 56777888888877 4555 443 66 999999999
Q ss_pred CCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 310 LEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 310 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
|+. +|..+..+++|+.|+|++|.+++.+|..+..+..
T Consensus 219 l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 994 6777778999999999999999998887766543
No 157
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.82 E-value=3.4e-20 Score=186.72 Aligned_cols=205 Identities=21% Similarity=0.332 Sum_probs=148.1
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|.+++
T Consensus 21 G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l 100 (287)
T 1u59_A 21 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFL 100 (287)
T ss_dssp CTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHH
T ss_pred cCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCCHHHHH
Confidence 468899999754 567899999876432 234556677766442 689999999999998
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~ 177 (287)
T 1u59_A 101 VGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 177 (287)
T ss_dssp TTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCG
T ss_pred HhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccc
Confidence 765567999999999999999999999 5689999999999999999999999999998764332110 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | | |+.|.... ....+...+...... .+ +..
T Consensus 178 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~i~~~~~~----~~--------------~~~ 237 (287)
T 1u59_A 178 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGKRM----EC--------------PPE 237 (287)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CTHHHHHHHHTTCCC----CC--------------CTT
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHhcCCcC----CC--------------CCC
Confidence 0112378888 6 6 88887532 122222222211100 00 112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLK 634 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~ 634 (639)
+...+.+++..|++.+|++||++.||+++|+.+..+...
T Consensus 238 ~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 238 CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 233577888999999999999999999999998776543
No 158
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.82 E-value=3.3e-20 Score=187.71 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=139.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+.... ....+..|+..++ .+|+||+ +|+|.+++.
T Consensus 21 G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~ 97 (298)
T 1csn_A 21 GSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLD 97 (298)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred cCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHH
Confidence 46889999985 578999999885432 2234555554432 2689999 999999997
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCCc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~~------ 533 (639)
.....+++..+.+|+.++++||+||| ..+|+||||||+||+++.++. +||+|||+++.........
T Consensus 98 ~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 174 (298)
T 1csn_A 98 LCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE 174 (298)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccC
Confidence 65556999999999999999999999 678999999999999987776 9999999998765432110
Q ss_pred -cc---------------cccccccccc--c-------CCCCCCCccCCCc-cchHHHHH-hhCCCCcceeeeccccccc
Q 041082 534 -TQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGE-MTLKSWVN-DLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 -~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~-~~l~~~~~-~~~~~~~~~~~d~~l~~~~ 586 (639)
.. ...+.++||| | ||+.|........ ......+. ...+... +
T Consensus 175 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----~------ 243 (298)
T 1csn_A 175 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL-----R------ 243 (298)
T ss_dssp CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH-----H------
T ss_pred ccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH-----H------
Confidence 00 0112356777 5 6776665321110 00000000 0000000 0
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+....+...+.+++..|++.+|++||++.+|++.|+++....
T Consensus 244 ----~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~ 285 (298)
T 1csn_A 244 ----ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL 285 (298)
T ss_dssp ----HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred ----HHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence 000122346778999999999999999999999999886543
No 159
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.82 E-value=2.4e-20 Score=186.92 Aligned_cols=202 Identities=23% Similarity=0.359 Sum_probs=144.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~~ 467 (639)
.++|.||++...++..+|+|.+..... ....+..|+..++. +|+||+++|+|.+++....
T Consensus 24 G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~ 102 (279)
T 1qpc_A 24 GQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPS 102 (279)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHH
T ss_pred CCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCCCHHHHHhcCC
Confidence 468999999988888999999865432 23566677766442 6899999999999987522
Q ss_pred -ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc----------
Q 041082 468 -YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ---------- 535 (639)
Q Consensus 468 -~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~---------- 535 (639)
..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 103 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 179 (279)
T 1qpc_A 103 GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179 (279)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccCh
Confidence 35899999999999999999999 6689999999999999999999999999998765432110 00
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | | |+.|.... ....+...+..... ... +..+...+
T Consensus 180 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~~~-----~~~-------------~~~~~~~l 239 (279)
T 1qpc_A 180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM--TNPEVIQNLERGYR-----MVR-------------PDNCPEEL 239 (279)
T ss_dssp HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTCC-----CCC-------------CTTCCHHH
T ss_pred hhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc--CHHHHHHHHhcccC-----CCC-------------cccccHHH
Confidence 0112367888 6 6 77776431 11111111111100 000 01122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+++..|++.+|++||++.++++.|+++....
T Consensus 240 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 240 YQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999887654
No 160
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.82 E-value=7e-21 Score=208.59 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=144.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.+||.||++...++..||||++..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 278 G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~ 356 (535)
T 2h8h_A 278 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGET 356 (535)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTEEHHHHHSHHH
T ss_pred CCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCCcHHHHHhhcC
Confidence 468999999998888899999875432 23567778777553 689999999999999752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~------ 534 (639)
...+++..+.+|+.+|++||+||| ..+|+|||||++|||++.++.+||+|||+++........ .+
T Consensus 357 ~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP 433 (535)
T 2h8h_A 357 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 433 (535)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCH
Confidence 245899999999999999999999 568999999999999999999999999999876432110 00
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|..... ...+.+.+.... . ...+..+...+
T Consensus 434 E~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~--~~~~~~~i~~~~---~---------------~~~~~~~~~~l 493 (535)
T 2h8h_A 434 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVERGY---R---------------MPCPPECPESL 493 (535)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC--HHHHHHHHHTTC---C---------------CCCCTTCCHHH
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC---C---------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 777765321 111111111110 0 00112234457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+++.+|++.+|++||+|.+|++.|+.+.
T Consensus 494 ~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 494 HDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 78999999999999999999999998764
No 161
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=196.44 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=139.2
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|||++.... ......+..|+..++ .+|+||+++|+|
T Consensus 82 G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L 161 (367)
T 3l9p_A 82 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDL 161 (367)
T ss_dssp CSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEH
T ss_pred CCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCH
Confidence 568999999854 35689999985432 223345666666543 278999999999
Q ss_pred hhccccC------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeeccccccccccccC
Q 041082 460 EKCLYSS------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++ .+||+|||+|+......
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~ 238 (367)
T 3l9p_A 162 KSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG 238 (367)
T ss_dssp HHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHS
T ss_pred HHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECCCcccccccccc
Confidence 9988652 135899999999999999999999 56899999999999999554 59999999998653322
Q ss_pred CC--cc---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QS--FT---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~--~~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.. .. ....+.++||| | | |+.|.... ....+.+.+..... .
T Consensus 239 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~--~~~~~~~~i~~~~~---~-------- 305 (367)
T 3l9p_A 239 YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFVTSGGR---M-------- 305 (367)
T ss_dssp SCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCC---C--------
T ss_pred ccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC---C--------
Confidence 11 00 00122367888 6 5 77776531 11122222211110 0
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+..+...+.+++.+|++.+|++||++.||+++|+.+.+.
T Consensus 306 -------~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 306 -------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp -------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 00112233577889999999999999999999999988654
No 162
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.82 E-value=4.9e-20 Score=186.24 Aligned_cols=205 Identities=18% Similarity=0.199 Sum_probs=138.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... ...+..|...++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (296)
T 4hgt_A 20 GSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFN 96 (296)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHH
Confidence 46899999985 5688999998654332 234555555432 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCc-------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSF-------T 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~-------~ 534 (639)
.....+++..+..++.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+++......... .
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~ 173 (296)
T 4hgt_A 97 FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 173 (296)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCccc
Confidence 55556999999999999999999999 5679999999999999 788999999999998765432210 0
Q ss_pred cc---------------ccccccccc--c-------CCCCCCCccCCC-c-cchHHHHHhhCCCCcceeeeccccccccc
Q 041082 535 QN---------------TNTCHHRIY--G-------TRRNPQMNFFSG-E-MTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 535 ~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~-~-~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
.. ..+.++||| | ||+.|....... . ..+........+... +
T Consensus 174 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 240 (296)
T 4hgt_A 174 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-E------------ 240 (296)
T ss_dssp CCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-H------------
T ss_pred ccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchh-h------------
Confidence 00 112256777 5 666665432111 0 011111000000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.........+.+++..|++.+|++||++.+|++.|+++....
T Consensus 241 --~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~ 282 (296)
T 4hgt_A 241 --VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp --HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred --hhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 000111346778899999999999999999999999887654
No 163
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.81 E-value=3.4e-20 Score=188.04 Aligned_cols=212 Identities=20% Similarity=0.349 Sum_probs=141.0
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||++.+ ..+..+|+|.+..... .....+..|+..++ .+|+||+++|+
T Consensus 32 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~ 111 (302)
T 4e5w_A 32 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGS 111 (302)
T ss_dssp CSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCB
T ss_pred CCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCc
Confidence 56899999984 4678999999875432 22355666766633 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~ 535 (639)
|.+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 112 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~ 188 (302)
T 4e5w_A 112 LKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDD 188 (302)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCC
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCC
Confidence 99998665556899999999999999999999 668999999999999999999999999999876543211 000
Q ss_pred ---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc---ceeeeccccccccc
Q 041082 536 ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV---MEVVDVNLLSMEDK 588 (639)
Q Consensus 536 ---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~ 588 (639)
...+.++||| | ||+.|.... ...+.....+... .+.+...+... .
T Consensus 189 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 260 (302)
T 4e5w_A 189 RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP------MALFLKMIGPTHGQMTVTRLVNTLKEG--K 260 (302)
T ss_dssp TTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH------HHHHHHHHCSCCGGGHHHHHHHHHHTT--C
T ss_pred CCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch------hhHHhhccCCcccccCHHHHHHHHhcc--C
Confidence 0112267888 6 777664321 1111111111100 00000000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
....+..+...+.+++.+|++.+|++|||+.|++++|+++.
T Consensus 261 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 261 RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 00111223345778999999999999999999999998763
No 164
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.81 E-value=4.5e-20 Score=186.53 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=139.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|++..... ...+..|...++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (296)
T 3uzp_A 20 GSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFN 96 (296)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHH
Confidence 46889999985 6789999998765432 234555555532 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCc-------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSF-------T 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~-------~ 534 (639)
.....+++..+..++.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+++......... .
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~ 173 (296)
T 3uzp_A 97 FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 173 (296)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSC
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccccccc
Confidence 55557999999999999999999999 5689999999999999 588999999999998765432210 0
Q ss_pred c---------------cccccccccc--c-------CCCCCCCccCC-Cccc-hHHHHHhhCCCCcceeeeccccccccc
Q 041082 535 Q---------------NTNTCHHRIY--G-------TRRNPQMNFFS-GEMT-LKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 535 ~---------------~~~~~~~dvy--G-------tg~~p~~~~~~-~~~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
. ...+.++||| | ||+.|...... .... +............ +
T Consensus 174 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 240 (296)
T 3uzp_A 174 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-E------------ 240 (296)
T ss_dssp CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-H------------
T ss_pred ccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch-H------------
Confidence 0 0112256777 5 77777653211 1111 1111111000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.....+...+.+++.+|++.+|++||++.+|++.|+++...
T Consensus 241 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 281 (296)
T 3uzp_A 241 --VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp --HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred --HHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence 00011234577889999999999999999999999988654
No 165
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.81 E-value=3.8e-21 Score=200.89 Aligned_cols=203 Identities=21% Similarity=0.371 Sum_probs=135.3
Q ss_pred CCcCcceEEEecC--C--ceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD--G--MKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g--~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.... + ..+|+|.+.... ......|..|+..++ .+|+||+++|+|.
T Consensus 100 G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~ 179 (373)
T 3c1x_A 100 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR 179 (373)
T ss_dssp CSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHH
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHH
Confidence 4689999998643 2 468999875432 223455666665532 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----cc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~- 535 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 180 ~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~ 256 (373)
T 3c1x_A 180 NFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 256 (373)
T ss_dssp HHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC--------------------
T ss_pred HHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCC
Confidence 999876667899999999999999999999 5689999999999999999999999999998664322110 00
Q ss_pred --------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | | |..|.... ....+...+.... ....
T Consensus 257 ~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~--~~~~~~~~~~~~~-----~~~~------------ 317 (373)
T 3c1x_A 257 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGR-----RLLQ------------ 317 (373)
T ss_dssp -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CSSCHHHHHHTTC-----CCCC------------
T ss_pred CCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC--CHHHHHHHHHcCC-----CCCC------------
Confidence 0112367888 6 6 44454332 1122222222110 0011
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++||++.|+++.|+++...+
T Consensus 318 -p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~ 357 (373)
T 3c1x_A 318 -PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 357 (373)
T ss_dssp -CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred -CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 1122345778899999999999999999999999887654
No 166
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.81 E-value=5.7e-20 Score=187.50 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=141.9
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. .++..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 113 (314)
T 2ivs_A 34 GEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113 (314)
T ss_dssp CSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred cCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCH
Confidence 46899999975 235789999986433 223355666776643 268999999999
Q ss_pred hhccccCC-----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSSN-----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~~-----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+++.... ..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp~NIli~~~~~~k 190 (314)
T 2ivs_A 114 RGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMK 190 (314)
T ss_dssp HHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTEEE
T ss_pred HHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccchheEEEcCCCCEE
Confidence 99886422 24889999999999999999999 56799999999999999999999
Q ss_pred eccccccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++........ ... ...+.++||| | | |+.|..... ...+...+...
T Consensus 191 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~~ 268 (314)
T 2ivs_A 191 ISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP--PERLFNLLKTG 268 (314)
T ss_dssp ECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTT
T ss_pred EccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHhhcC
Confidence 9999999876433211 000 0112378888 6 6 777765321 12222222211
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.... .+..+...+.+++.+|++.+|++||++.||+++|+++..
T Consensus 269 ~~~~------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 269 HRME------------------RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp CCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CcCC------------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1000 011123357788899999999999999999999998743
No 167
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.81 E-value=2.5e-20 Score=190.69 Aligned_cols=210 Identities=21% Similarity=0.331 Sum_probs=144.3
Q ss_pred CCcCcceEEEec-----CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-----DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-----~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||++.+. .+..+|+|++..... .....+..|+..++ .+|+||+++|+
T Consensus 42 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~ 121 (318)
T 3lxp_A 42 GHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGS 121 (318)
T ss_dssp CSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCB
T ss_pred CCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCc
Confidence 568899887653 578899999875432 23445667776643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~ 535 (639)
|.+++... .+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 122 L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 196 (318)
T 3lxp_A 122 LRDYLPRH--SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRED 196 (318)
T ss_dssp HHHHGGGS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccC
Confidence 99998653 4899999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC------cceeeecccccc
Q 041082 536 ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------VMEVVDVNLLSM 585 (639)
Q Consensus 536 ---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------~~~~~d~~l~~~ 585 (639)
...+.++||| | ||+.|....... ...+. ..... ..+.++....
T Consensus 197 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 269 (318)
T 3lxp_A 197 GDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTK---FLELI--GIAQGQMTVLRLTELLERGER-- 269 (318)
T ss_dssp CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH---HHHHH--CSCCHHHHHHHHHHHHHTTCC--
T ss_pred CCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchh---hhhhh--cccccchhHHHHHHHHhcccC--
Confidence 0112367888 6 888776432100 00000 00000 0011111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+..+...+.+++.+|++.+|++||++.|+++.|+.+.+.+
T Consensus 270 ----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 312 (318)
T 3lxp_A 270 ----LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY 312 (318)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence 0111223446778899999999999999999999999998776
No 168
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.81 E-value=8.6e-20 Score=188.02 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=141.3
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++. +|+||+++
T Consensus 46 G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 125 (334)
T 2pvf_A 46 GAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125 (334)
T ss_dssp CSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTT
T ss_pred cCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCC
Confidence 468999999863 467899999865432 233456666665432 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||
T Consensus 126 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 202 (334)
T 2pvf_A 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFG 202 (334)
T ss_dssp CBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEEcCCCCEEEcccc
Confidence 99999886532 24899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++........ ... ...+.++||| | | |+.|.... ....+...+.......
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~~- 279 (334)
T 2pvf_A 203 LARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGHRMD- 279 (334)
T ss_dssp TCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHHTCCCC-
T ss_pred ccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC--CHHHHHHHHhcCCCCC-
Confidence 99876543211 000 0122378888 6 6 77776531 1111112221111000
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+..+...+.+++..|++.+|++||++.||++.|+++....
T Consensus 280 -----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 280 -----------------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp -----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -----------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 01122335778889999999999999999999999987653
No 169
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.81 E-value=5.7e-20 Score=183.34 Aligned_cols=200 Identities=23% Similarity=0.345 Sum_probs=130.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh----hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER----AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|+|++...... ....+..|+..++ .+|+||+++|+|.++
T Consensus 18 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 96 (271)
T 3dtc_A 18 GGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRV 96 (271)
T ss_dssp ETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHH
T ss_pred CCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHH
Confidence 468899999875 788999998654322 2345666666643 278999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--------CcceeeccccccccccccCCCc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--------NMVAHLSDFGMAKLLLKEDQSF- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--------~~~~~i~dfgla~~~~~~~~~~- 533 (639)
+.. ..+++..+..++.++++||+|||.....+|+||||||+||+++. ++.+|++|||+++.........
T Consensus 97 ~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~ 174 (271)
T 3dtc_A 97 LSG--KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSA 174 (271)
T ss_dssp HTS--SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC------------
T ss_pred hhc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCC
Confidence 853 46899999999999999999999654456999999999999986 6779999999998654332110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... ..... ............+
T Consensus 175 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~---~~~~~~~~~~~~~-------------- 235 (271)
T 3dtc_A 175 AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI--DGLAV---AYGVAMNKLALPI-------------- 235 (271)
T ss_dssp -CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS--CHHHH---HHHHHTSCCCCCC--------------
T ss_pred CCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHH---HHhhhcCCCCCCC--------------
Confidence 0 01123368888 6 788776531 11111 1111111100000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+..+...+.+++.+|++.+|++||++.||+++|+++
T Consensus 236 ~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 236 PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 112233577888999999999999999999999754
No 170
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=190.28 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=141.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH------------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.. ..+..+|+|++..........+..|+..++ .+|+||+++|+|.+
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~ 119 (317)
T 2buj_A 40 GGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWN 119 (317)
T ss_dssp --CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHH
Confidence 46889999986 568999999886554444556667776633 26889999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC--------
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED-------- 530 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~-------- 530 (639)
++.. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......
T Consensus 120 ~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 196 (317)
T 2buj_A 120 EIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALT 196 (317)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhccccccccccccc
Confidence 8865 3456899999999999999999999 5689999999999999999999999999887543210
Q ss_pred ------------CCcccc-------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 531 ------------QSFTQN-------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 531 ------------~~~~~~-------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
+..+.. ..+.++||| | ||+.|.......+..+...+...... +
T Consensus 197 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-------~-- 267 (317)
T 2buj_A 197 LQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI-------P-- 267 (317)
T ss_dssp HHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--C-------C--
T ss_pred ccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCC-------C--
Confidence 000110 113367888 6 77777643222222222221110000 0
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
........+.+++.+|++.+|++||++.||++.|+.++.
T Consensus 268 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 268 ---------QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp ---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred ---------ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 001122357788899999999999999999999998753
No 171
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.81 E-value=3.9e-20 Score=189.64 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=133.3
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcC
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~ 454 (639)
.++|.||++..... ..+|+|.+.... ......+..|+..++ .+|+||+
T Consensus 34 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~ 113 (323)
T 3qup_A 34 GEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFM 113 (323)
T ss_dssp ETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECC
T ss_pred cCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEec
Confidence 46899999987543 279999986542 233456666766632 4688999
Q ss_pred CCCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 455 PHGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 455 ~~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
++|+|.+++.. ....+++..+.+|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 114 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~ 190 (323)
T 3qup_A 114 KHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSG 190 (323)
T ss_dssp TTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred cCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEEeecccccccccc
Confidence 99999998854 1225899999999999999999999 568999999999999999999999999999876443
Q ss_pred CCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 530 DQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 530 ~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
.... .. ...+.++||| | | |+.|.... ....+...+......
T Consensus 191 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~---------- 258 (323)
T 3qup_A 191 DYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI--ENAEIYNYLIGGNRL---------- 258 (323)
T ss_dssp ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCC----------
T ss_pred ccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc--ChHHHHHHHhcCCCC----------
Confidence 2110 00 0123378888 6 6 77776532 112222221110000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+..+...+.+++.+|++.+|++||++.++++.|+++...
T Consensus 259 --------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 259 --------KQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp --------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --------CCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00112234577899999999999999999999999988653
No 172
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.81 E-value=1.4e-20 Score=189.74 Aligned_cols=203 Identities=22% Similarity=0.371 Sum_probs=135.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... .+|+|++.... ......+..|+..++ .+|+||+++|+|.+++..
T Consensus 35 G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (289)
T 3og7_A 35 GSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHA 112 (289)
T ss_dssp CSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHTT
T ss_pred CCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCcHHHHHhh
Confidence 4689999998653 58999886543 223456777777744 268999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------- 532 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------- 532 (639)
....+++..+.+++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 113 ~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~ 189 (289)
T 3og7_A 113 SETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWM 189 (289)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCcccc
Confidence 6667999999999999999999999 567999999999999999999999999999765421110
Q ss_pred cc-------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 FT-------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 ~~-------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+ ....+.++||| | ||+.|..... ....+.+.+..... .+.+.. ....+
T Consensus 190 aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~-------~~~~~~-------~~~~~ 254 (289)
T 3og7_A 190 APEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRGSL-------SPDLSK-------VRSNC 254 (289)
T ss_dssp CHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHHHTSC-------CCCTTS-------SCTTS
T ss_pred CchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhccccc-------Ccchhh-------ccccC
Confidence 00 00112367888 6 7777765321 11112222211110 000000 01123
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
...+.+++.+|++.+|++||++.|++++|+++.
T Consensus 255 ~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 255 PKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 346778899999999999999999999999874
No 173
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.81 E-value=5.6e-20 Score=190.26 Aligned_cols=112 Identities=26% Similarity=0.308 Sum_probs=90.9
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++.-. .+..||+|.+..... ...+..|++.++ .+||||+++|+|.+
T Consensus 32 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~ 109 (361)
T 4f9c_A 32 GTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLD 109 (361)
T ss_dssp CSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHH
T ss_pred ccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHH
Confidence 468999999742 467899998864432 234555665533 26899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeecccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLL 527 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~ 527 (639)
++. .+++.....++.+++.||+||| +.+|+||||||.|||++.+ +.+||+|||+|+...
T Consensus 110 ~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~ 169 (361)
T 4f9c_A 110 ILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH 169 (361)
T ss_dssp HHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred HHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence 884 3888888999999999999999 6789999999999999976 799999999998654
No 174
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.81 E-value=9.1e-20 Score=185.99 Aligned_cols=203 Identities=24% Similarity=0.419 Sum_probs=135.7
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~ 455 (639)
.++|.||++.... +..+|+|.+.... ......+..|+..++ .+|+||++
T Consensus 45 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~ 124 (313)
T 3brb_A 45 GEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMK 124 (313)
T ss_dssp -CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCT
T ss_pred cCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEeccc
Confidence 4689999997642 4579999986543 223345666666532 46899999
Q ss_pred CCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 456 HGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 456 ~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+|+|.+++.. ....+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......
T Consensus 125 ~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~ 201 (313)
T 3brb_A 125 YGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGD 201 (313)
T ss_dssp TCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEECSCSCC-------
T ss_pred CCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEEeecCcceeccccc
Confidence 9999988742 3356899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CCc-------c----------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF-------T----------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~-------~----------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... + ....+.++||| | | |+.|.... ....+.+.+......
T Consensus 202 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~~~~----------- 268 (313)
T 3brb_A 202 YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV--QNHEMYDYLLHGHRL----------- 268 (313)
T ss_dssp ---------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC-----------
T ss_pred ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC--CHHHHHHHHHcCCCC-----------
Confidence 110 0 00112367888 6 6 66665432 112222222111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+..+...+.+++.+|++.+|++||++.+++++|+++.+.+
T Consensus 269 -------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 269 -------KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp -------CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -------CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 001122345778889999999999999999999999887653
No 175
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.81 E-value=9.1e-20 Score=185.72 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=135.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 43 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 122 (310)
T 2wqm_A 43 GQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRM 122 (310)
T ss_dssp C--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHH
T ss_pred CCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHH
Confidence 46889999986 568999999986532 223445666666643 268999999999998
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
+.. ....+++..+.+++.++++||+||| ..+++||||||+||+++.++.+||+|||+++.........
T Consensus 123 l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 199 (310)
T 2wqm_A 123 IKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT 199 (310)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC------------------C
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCC
Confidence 864 3456899999999999999999999 5689999999999999999999999999998664322110
Q ss_pred -----c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 -----T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 -----~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+ ....+.++||| | ||+.|.... .....++........... .. ...
T Consensus 200 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~---~~~~~~~~~~~~~~~~~~-----~~---------~~~ 262 (310)
T 2wqm_A 200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD---KMNLYSLCKKIEQCDYPP-----LP---------SDH 262 (310)
T ss_dssp CSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC------CCHHHHHHHHHTTCSCC-----CC---------TTT
T ss_pred eeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc---chhHHHHHHHhhcccCCC-----Cc---------ccc
Confidence 0 01123378888 6 788776432 222222222111111000 00 011
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+.+++.+|++.+|++||++.+|++.|++++...
T Consensus 263 ~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~ 299 (310)
T 2wqm_A 263 YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299 (310)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence 1234677888999999999999999999999997653
No 176
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=4.6e-22 Score=221.72 Aligned_cols=344 Identities=15% Similarity=0.158 Sum_probs=241.8
Q ss_pred CcEEEEEeCCCCCcccCCcCCC-CCCCCCEEeccCC-cCCcc-CCccccCCcccceeeccCCcCCCCCCcccc----CCC
Q 041082 52 YRVTTLNISGLSLTSTIPSELG-NLSSLQTLDLSFN-WFSGS-IPSSIFNMSSLLSIYFNNNTLFGEIPEELG----NLA 124 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~ 124 (639)
.+++.|+|+++.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3688999999988876666665 6899999999999 45432 455556899999999999998776555444 677
Q ss_pred CCcEEeccccc--Ccc-ccCccccCCCCCCEEecCCC-CCCCC-----CCCCccEEEccCCc------------------
Q 041082 125 ELETLWLQNNF--LTG-TIHSSIFNLSSLSDLDLSHN-NLTDV-----QIPNLENLLLWGNN------------------ 177 (639)
Q Consensus 125 ~L~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~-----~l~~L~~L~L~~N~------------------ 177 (639)
+|++|+|++|. +.. .++..+..+++|++|+|++| .++++ .+++|+.|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 99999999997 221 12222345799999999988 33321 25678888755441
Q ss_pred --------cC----ccCCccccCCCCCcEEEcccCCCcccC-ccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcc
Q 041082 178 --------FS----GAIPHFIFNASKLSILELQKNSFFDLI-PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKY 244 (639)
Q Consensus 178 --------l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~ 244 (639)
+. +.+|..+..+++|+.|++++|.+.+.. +..+..+++|++|++++| ++. .. +..
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~------l~~ 332 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AG------LEV 332 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HH------HHH
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HH------HHH
Confidence 11 123334446789999999999976432 223568999999999987 331 00 111
Q ss_pred hhhhccCccEEEeec---------Cccccccchhhc-CCCCCCEEECCCCCCCcccccccc-CCcCCcEEEcc--C----
Q 041082 245 LEQSSQSLEVFSMFN---------CNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFV--D---- 307 (639)
Q Consensus 245 l~~~~~~l~~l~l~~---------n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~--~---- 307 (639)
+....++|+.|++.. +.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 222345788888843 455544333443 488999999999998876555554 58899999998 4
Q ss_pred CcCCCC-----CchhhcCCCCCcEEECCCCcCcccCCccccC-CCCCCEEeCCCCcCcccchhhh-hcCCCCcEEEcccC
Q 041082 308 NKLEGP-----IPYEFCRLASLYELDLSGNKLSGSIPTCFGN-QTSLRILSLDSNKLISIIPSTL-WNLKDILYLNLSSN 380 (639)
Q Consensus 308 N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N 380 (639)
|.+++. ++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 555532 223367789999999987 666554444544 7899999999999877665555 67899999999999
Q ss_pred CCCCCCcc-ccccccccccccccCCCCCC
Q 041082 381 FFISPLPL-EIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 381 ~l~~~~p~-~~~~l~~L~~l~ls~N~l~g 408 (639)
.++..... ....+++|+.|++++|+++.
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 98544333 34568899999999999854
No 177
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.81 E-value=4.8e-20 Score=188.87 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=135.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 97 (323)
T 3tki_A 18 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97 (323)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSB
T ss_pred CCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHh
Confidence 468999999865 688999999865432 22345666666643 37899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc---
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT--- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~--- 534 (639)
.. ..+++..+..++.++++||+||| ..+|+||||||.||+++.++.+||+|||+++.+...... .+
T Consensus 98 ~~-~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y 173 (323)
T 3tki_A 98 PD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173 (323)
T ss_dssp TT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGG
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCc
Confidence 43 45899999999999999999999 668999999999999999999999999999865422110 00
Q ss_pred ---c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ---Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ---~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.............|........ + .....
T Consensus 174 ~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~------~------------~~~~~ 235 (323)
T 3tki_A 174 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN------P------------WKKID 235 (323)
T ss_dssp SCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST------T------------GGGSC
T ss_pred cCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC------c------------cccCC
Confidence 0 0113368888 6 888887643222223333332111000 0 01112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 236 ~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 236 SAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhh
Confidence 34567889999999999999999975
No 178
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.81 E-value=1e-20 Score=210.98 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=144.0
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++... .+..+|||++..... .....+..|+.+++. +||||+++|+|.++
T Consensus 380 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~ 459 (635)
T 4fl3_A 380 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKY 459 (635)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHH
T ss_pred CCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCCCHHHH
Confidence 468999999653 457899999875432 234567777777543 68999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ---- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~---- 535 (639)
+.. ...+++..+..|+.+|+.||+||| ..+|+||||||+||+++.++.+||+|||+|+.+..+... ...
T Consensus 460 l~~-~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t 535 (635)
T 4fl3_A 460 LQQ-NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWP 535 (635)
T ss_dssp HHH-CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------C
T ss_pred Hhh-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCc
Confidence 864 345899999999999999999999 567999999999999999999999999999877543211 000
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+.+.+.... .. ..+.
T Consensus 536 ~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~~~~---~~---------------~~p~ 595 (635)
T 4fl3_A 536 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAMLEKGE---RM---------------GCPA 595 (635)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTC---CC---------------CCCT
T ss_pred eeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCC---CC---------------CCCC
Confidence 0122378888 6 6 77776532 1111222221110 00 0112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||+|.+|+++|+.+...
T Consensus 596 ~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 596 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 2344677899999999999999999999999987544
No 179
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.81 E-value=6e-20 Score=187.25 Aligned_cols=203 Identities=20% Similarity=0.307 Sum_probs=142.1
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++. +|+||+++|+
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 113 (313)
T 1t46_A 34 GAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGD 113 (313)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEE
T ss_pred cCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCC
Confidence 46899999975 3467899999875432 223456666665432 6799999999
Q ss_pred chhccccCC-----------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 459 LEKCLYSSN-----------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 459 L~~~l~~~~-----------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|.+++.... ..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||
T Consensus 114 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg 190 (313)
T 1t46_A 114 LLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFG 190 (313)
T ss_dssp HHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCG
T ss_pred HHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEcCCCCEEEcccc
Confidence 999886532 24899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++......... .. ...+.++||| | | |+.|...... ...+...+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~-- 267 (313)
T 1t46_A 191 LARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-DSKFYKMIKEGFRM-- 267 (313)
T ss_dssp GGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-SHHHHHHHHHTCCC--
T ss_pred ccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-hhHHHHHhccCCCC--
Confidence 998765433210 00 0122368888 6 6 7777653211 11122222211110
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.. +......+.+++.+|++.+|++||++.||+++|+++...
T Consensus 268 --~~--------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 268 --LS--------------PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp --CC--------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CC--------------cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 00 011223567788999999999999999999999987654
No 180
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.80 E-value=2.3e-20 Score=204.94 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=139.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.. ..|..+|+|.+..........+..|+.+++. +|||||++|+|.+++..
T Consensus 168 G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~ 247 (573)
T 3uto_A 168 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVAD 247 (573)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTC
T ss_pred ccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHH
Confidence 45899999986 4689999999876554445567777777543 68999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC--cceeeccccccccccccCCCccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN--MVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~--~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
....+++.....++.+|+.||+||| ..+|+||||||.|||++.+ +.+||+|||+|+.+.......+.
T Consensus 248 ~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~A 324 (573)
T 3uto_A 248 EHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA 324 (573)
T ss_dssp TTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccC
Confidence 5556899999999999999999999 6789999999999999854 78999999999987654321000
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++|+| | +|+.|+.+. +-.+.......... .+++.. .......+
T Consensus 325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-----~~~~~~~~i~~~~~--~~~~~~----------~~~~s~~~ 387 (573)
T 3uto_A 325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-----NDDETLRNVKSCDW--NMDDSA----------FSGISEDG 387 (573)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTCC--CCCSGG----------GTTSCHHH
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHhCCC--CCCccc----------ccCCCHHH
Confidence 0112367888 6 788887531 11111111111100 001110 01112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.++..+|++.+|++|||+.|+++
T Consensus 388 ~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 388 KDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67888999999999999999986
No 181
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.5e-19 Score=168.86 Aligned_cols=181 Identities=26% Similarity=0.272 Sum_probs=128.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
+.++.+++.+. .+|..+ .++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46777888777 456554 357888888888888777777888888888888888888666666666666666666555
Q ss_pred CCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 159 NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 159 ~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
.++ +..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++.++
T Consensus 87 ~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------- 141 (208)
T 2o6s_A 87 QLQ------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------- 141 (208)
T ss_dssp CCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------
T ss_pred cCC------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-------
Confidence 544 3445556777888888888888887777777788888888888877765322
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 318 (639)
..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..+
T Consensus 142 -----------------------------~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 142 -----------------------------GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -----------------------------TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -----------------------------HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence 234556677777777776653 34567777777777777777766
Q ss_pred cCCCC
Q 041082 319 CRLAS 323 (639)
Q Consensus 319 ~~l~~ 323 (639)
+.++.
T Consensus 186 ~~l~~ 190 (208)
T 2o6s_A 186 GSVAP 190 (208)
T ss_dssp SSBCT
T ss_pred ccccC
Confidence 65543
No 182
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=188.92 Aligned_cols=202 Identities=23% Similarity=0.338 Sum_probs=136.7
Q ss_pred CCcCcceEEEec-CCce----eeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK----VAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+.. +++|.+.... ......+..|+..++. +|++|+++|+|.+
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v~~~~~~g~L~~ 105 (327)
T 3lzb_A 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 105 (327)
T ss_dssp CSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEEECCCSSCBHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEEEEecCCCcHHH
Confidence 468999999854 4544 4666664322 2334566677766432 6789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 106 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t 182 (327)
T 3lzb_A 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 182 (327)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCcc
Confidence 98765567899999999999999999999 5689999999999999999999999999998764332110 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+...+....... .+.
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~~------------------~~~ 242 (327)
T 3lzb_A 183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERLP------------------QPP 242 (327)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCCC------------------CCT
T ss_pred ccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCCCC------------------CCc
Confidence 0112367888 6 6 77777532 1222222222111000 011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||++.|+++.|+++...
T Consensus 243 ~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 243 ICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 1223567788999999999999999999999988643
No 183
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.9e-19 Score=170.62 Aligned_cols=151 Identities=24% Similarity=0.272 Sum_probs=125.0
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
+++++++++ .+|..+. ++|++|+|++|.|++..|..|..+++|+.|+|++|++.+..|..|.++++|++|+|++|++
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 334445565 4666665 6899999999999987778899999999999999999998899999999999999999999
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
+...+..|.++++|++|+|++|.|+ +..|..|..+++|+.|+|++|.+++..+..|..+++|
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKIN------------------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CccCHhHccCCCCCCEEECCCCCCC------------------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 9776666777766666666665554 4567778888999999999999999888889999999
Q ss_pred CEEEccCCCCCC
Q 041082 217 KRLNLYDNYLTS 228 (639)
Q Consensus 217 ~~L~Ls~N~l~~ 228 (639)
+.|+|++|.+..
T Consensus 155 ~~L~L~~N~~~c 166 (220)
T 2v9t_B 155 QTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEeCCCCcCC
Confidence 999999998865
No 184
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=192.63 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=138.6
Q ss_pred CCcCcceEEEecC---------CceeeeEEechhhhhhhhhHHHHHHHH-------------------------------
Q 041082 407 SGFGSIYKARIQD---------GMKVAVKVFDLQYERAFKSFDVACDMM------------------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~---------g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------------- 446 (639)
.++|.||++.... +..+|+|.+... ..+..|+..+
T Consensus 53 G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~ 127 (352)
T 2jii_A 53 DNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGV 127 (352)
T ss_dssp ETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEE
T ss_pred CCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccc
Confidence 4689999998763 789999998643 1222222221
Q ss_pred -----HhhhhhcCCCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc--ceeec
Q 041082 447 -----KKLVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--VAHLS 518 (639)
Q Consensus 447 -----~~Lv~ey~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--~~~i~ 518 (639)
..+|+||+ +|+|.+++... ...+++..+..|+.+++.||+||| ..+|+||||||+||+++.++ .+||+
T Consensus 128 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~~~~~~~~~kl~ 203 (352)
T 2jii_A 128 HQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFVDPEDQSQVTLA 203 (352)
T ss_dssp ETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEEETTEEEEEEEC
T ss_pred cCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEEcCCCCceEEEe
Confidence 13789999 99999998753 356999999999999999999999 56899999999999999998 99999
Q ss_pred cccccccccccCCC------------cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHH
Q 041082 519 DFGMAKLLLKEDQS------------FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN 567 (639)
Q Consensus 519 dfgla~~~~~~~~~------------~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~ 567 (639)
|||+++.+...... .+ ....+.++||| | ||+.|..........+..+..
T Consensus 204 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~ 283 (352)
T 2jii_A 204 GYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQ 283 (352)
T ss_dssp CGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHH
T ss_pred cCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHH
Confidence 99999876533210 00 00122368888 6 788877643222222222221
Q ss_pred hhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 568 DLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 568 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
... ....+..+..... ......+.+++..|++.+|++||++.+|+++|+++....
T Consensus 284 ~~~-~~~~~~~~~~~~~---------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 284 KFV-DKPGPFVGPCGHW---------IRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp HHH-HSCCCEECTTSCE---------ECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred hcc-CChhhhhhhcccc---------CCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence 111 1111111111100 011235677888999999999999999999999886553
No 185
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=181.63 Aligned_cols=219 Identities=19% Similarity=0.204 Sum_probs=147.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 99 (319)
T 4euu_A 20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTV 99 (319)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHH
Confidence 568999999875 488999999875432 22345556666532 278999999999999
Q ss_pred cccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccccCCCc---
Q 041082 463 LYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 463 l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+.... ..+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+.........
T Consensus 100 l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~ 176 (319)
T 4euu_A 100 LEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176 (319)
T ss_dssp HHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCC
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecc
Confidence 87632 23899999999999999999999 5689999999999999 888999999999998765432210
Q ss_pred -------c------------ccccccccccc--c-------CCCCCCCccCCCccchHHHH---HhhCCCCcceeeeccc
Q 041082 534 -------T------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWV---NDLLPISVMEVVDVNL 582 (639)
Q Consensus 534 -------~------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~---~~~~~~~~~~~~d~~l 582 (639)
+ ....+.++||| | ||+.|...... .....+.+ ....+....+.+....
T Consensus 177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~ 255 (319)
T 4euu_A 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG-PRRNKEVMYKIITGKPSGAISGVQKAE 255 (319)
T ss_dssp SCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTC-GGGCHHHHHHHHHHCCTTCCEEEECST
T ss_pred cCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc-cchhHHHHHHHhcCCCcccchhhhccc
Confidence 0 01123478999 6 88888753221 11111221 1122222111111000
Q ss_pred cc------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 583 LS------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 583 ~~------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.. ...............+.++...|++.+|++|||+.|+++...+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 256 NGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp TCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred CCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 00 000011223455667788999999999999999999999887654
No 186
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.80 E-value=1.8e-20 Score=189.82 Aligned_cols=203 Identities=22% Similarity=0.367 Sum_probs=139.3
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++..... ..+|+|.+.... ......+..|...++ .+|+||+++|+|.
T Consensus 36 G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~ 115 (298)
T 3f66_A 36 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR 115 (298)
T ss_dssp ETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHH
T ss_pred cCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHH
Confidence 46899999986432 358889876432 223455666666643 2689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----ccc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----FTQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~~~- 535 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 116 ~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~ 192 (298)
T 3f66_A 116 NFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192 (298)
T ss_dssp HHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----C
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCC
Confidence 999766667899999999999999999999 568999999999999999999999999999866432211 000
Q ss_pred --------------cccccccccc--c-------CCCC-CCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRN-PQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | ||.. |.... ....+...+..... ...+
T Consensus 193 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~----------- 254 (298)
T 3f66_A 193 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGRR-----LLQP----------- 254 (298)
T ss_dssp CBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS--CTTTHHHHHHTTCC-----CCCC-----------
T ss_pred CCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC--CHHHHHHHHhcCCC-----CCCC-----------
Confidence 0112367888 6 6443 33221 11122222211100 0001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+...+.+++..|++.+|++||++.|++++|+++...+
T Consensus 255 --~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 255 --EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred --ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 112235778889999999999999999999999886543
No 187
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.80 E-value=7.7e-20 Score=188.07 Aligned_cols=205 Identities=18% Similarity=0.170 Sum_probs=138.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... ...+..|+..++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (330)
T 2izr_A 20 GNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFD 96 (330)
T ss_dssp -CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred cCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHH
Confidence 46899999985 5689999999865432 235566665543 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCCc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~~------ 533 (639)
.....+++..+..|+.+++.||+||| ..+|+||||||+||+++.++. +||+|||+|+.+.......
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~ 173 (330)
T 2izr_A 97 LCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYRE 173 (330)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccc
Confidence 65567999999999999999999999 568999999999999999887 9999999998764432110
Q ss_pred -ccc---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 534 -TQN---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 534 -~~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
... ..+.++||| | ||+.|....- ...+.+...... +........
T Consensus 174 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~--------~~~~~~~~~- 242 (330)
T 2izr_A 174 HKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--ADTLKERYQKIG--------DTKRATPIE- 242 (330)
T ss_dssp CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CSSHHHHHHHHH--------HHHHHSCHH-
T ss_pred cCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc--cccHHHHHHHHH--------hhhccCCHH-
Confidence 000 012256666 5 6666654321 111111111000 000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.....+. .+.+++..|++.+|++||++.+|++.|+++.+.
T Consensus 243 --~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 243 --VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp --HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred --HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 0000122 788899999999999999999999999877544
No 188
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.80 E-value=7.2e-20 Score=196.98 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=139.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..||||++..... ...+..|..+++ .+||||+ +|+|.+++.
T Consensus 18 G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~ 94 (483)
T 3sv0_A 18 GSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFN 94 (483)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHH
Confidence 46899999985 5689999998765432 234555555532 2789999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCcc-------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFT------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~~------- 534 (639)
.....++|..+..|+.+|+.||+||| ..+|+||||||.|||+ +.++.+||+|||+++.+........
T Consensus 95 ~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~ 171 (483)
T 3sv0_A 95 FCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENK 171 (483)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCC
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccccccc
Confidence 55567999999999999999999999 5689999999999999 6889999999999987654332100
Q ss_pred cc---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 QN---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 ~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
.. ..+.+.||| | ||+.|....... ...+.............++
T Consensus 172 ~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~~----------- 238 (483)
T 3sv0_A 172 NLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG--TKKQKYEKISEKKVATSIE----------- 238 (483)
T ss_dssp CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS--SHHHHHHHHHHHHHHSCHH-----------
T ss_pred ccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch--hHHHHHHHHhhccccccHH-----------
Confidence 00 012256777 5 666666532111 1111100000000000000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.....+...+.+++..|++.+|++||+|.+|++.|+.+..
T Consensus 239 ~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 239 ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 0001123467889999999999999999999999998854
No 189
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.80 E-value=7.1e-20 Score=182.48 Aligned_cols=203 Identities=22% Similarity=0.342 Sum_probs=139.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|+|++.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 21 G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 99 (271)
T 3kmu_A 21 NHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNV 99 (271)
T ss_dssp ETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHH
T ss_pred CCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHH
Confidence 468899999985 7889999987543 222345666665522 378999999999999
Q ss_pred cccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------c
Q 041082 463 LYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------Q 535 (639)
Q Consensus 463 l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------~ 535 (639)
+.... ..+++..+..++.+++.||+|||.. .++|+||||||+||+++.++.++++|||++..........+ .
T Consensus 100 l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE 178 (271)
T 3kmu_A 100 LHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPE 178 (271)
T ss_dssp HHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHH
T ss_pred HhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccccChh
Confidence 97643 3589999999999999999999932 33499999999999999999999999888765432221110 0
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | ||+.|.... .-.+......... ..+.+ +..+...
T Consensus 179 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~----~~~~~----------~~~~~~~ 239 (271)
T 3kmu_A 179 ALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-----SNMEIGMKVALEG----LRPTI----------PPGISPH 239 (271)
T ss_dssp HHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS-----CHHHHHHHHHHSC----CCCCC----------CTTCCHH
T ss_pred hhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc-----ChHHHHHHHHhcC----CCCCC----------CCCCCHH
Confidence 0111258888 6 788877532 1111111111010 00000 1112234
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+.+++..|++.+|++|||+.||++.|+++++
T Consensus 240 ~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 240 VSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 6778889999999999999999999998753
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=3.7e-22 Score=219.14 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=120.5
Q ss_pred CCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 73 GNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 73 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
..+++|+.|+|++|.+. .+|.+++++++|+.|++++|......|. .+..+.+.+.+|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 56677777777777776 6777777777777777765541000000 00111133444555555555555
Q ss_pred Ee-cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 153 LD-LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 153 L~-Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
|+ ++.|.+ ..|..+.+++|.++...+ ..|+.|+|++|.++++ |. |+.+++|+.|+|++|.++.
T Consensus 414 L~~l~~n~~-----~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~--- 477 (567)
T 1dce_A 414 VDPMRAAYL-----DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA--- 477 (567)
T ss_dssp HCGGGHHHH-----HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC---
T ss_pred Ccchhhccc-----chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc---
Confidence 55 444432 234444445555443221 1356666666666653 43 6666666666666665553
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|++++|+++
T Consensus 478 ----------------------------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 478 ----------------------------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp ----------------------------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred ----------------------------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 23334455566666666666664 44 5666666666666666666
Q ss_pred CCC-chhhcCCCCCcEEECCCCcCcccCCcc---ccCCCCCCEEeC
Q 041082 312 GPI-PYEFCRLASLYELDLSGNKLSGSIPTC---FGNQTSLRILSL 353 (639)
Q Consensus 312 ~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~l 353 (639)
+.+ |..|+.+++|+.|+|++|.+++.+|.. +..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 655 666666666666666666666554422 223566666653
No 191
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.80 E-value=5.4e-20 Score=185.35 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=139.8
Q ss_pred CCcCcceEEEecC-C-------ceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD-G-------MKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g-------~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.... + ..+++|.+..........+..|+..++ .+|+||+++|+
T Consensus 19 G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 98 (289)
T 4fvq_A 19 GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGS 98 (289)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCB
T ss_pred CCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCC
Confidence 4688999987653 2 469999987666555667777777744 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--------eeeccccccccccccC
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--------AHLSDFGMAKLLLKED 530 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--------~~i~dfgla~~~~~~~ 530 (639)
|.+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++. +|++|||+++......
T Consensus 99 L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~ 175 (289)
T 4fvq_A 99 LDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD 175 (289)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCcc
Confidence 99999865556899999999999999999999 567999999999999998887 9999999997654321
Q ss_pred C-------Cccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 531 Q-------SFTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 531 ~-------~~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
. ..+. ...+.++||| | ||+.|...... .......... ........
T Consensus 176 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~-~~~~~~~~~~--~~~~~~~~----------- 241 (289)
T 4fvq_A 176 ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD-SQRKLQFYED--RHQLPAPK----------- 241 (289)
T ss_dssp HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-HHHHHHHHHT--TCCCCCCS-----------
T ss_pred ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc-hHHHHHHhhc--cCCCCCCC-----------
Confidence 1 0010 1234478888 6 65444322111 1111111110 00000000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
...+.+++..|++.+|++|||+.|+++.|+++..
T Consensus 242 -------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 242 -------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp -------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred -------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 1135668889999999999999999999998854
No 192
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.80 E-value=6.8e-20 Score=187.95 Aligned_cols=192 Identities=20% Similarity=0.254 Sum_probs=135.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..|..+|+|++.... ......+..|+..++. +|+||+++|+|.+++
T Consensus 26 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l 105 (328)
T 3fe3_A 26 GNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYL 105 (328)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHH
Confidence 56899999986 578999999986543 2233456667766442 689999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----c-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 106 ~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a 181 (328)
T 3fe3_A 106 VAH-GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAA 181 (328)
T ss_dssp HHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCC
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeC
Confidence 643 35889999999999999999999 5689999999999999999999999999998665332110 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|... .+..+.......... .+ +......
T Consensus 182 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~-----~~~~~~~~~i~~~~~------~~----------p~~~s~~ 240 (328)
T 3fe3_A 182 PELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-----QNLKELRERVLRGKY------RI----------PFYMSTD 240 (328)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CC----------CTTSCHH
T ss_pred cccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC------CC----------CCCCCHH
Confidence 00112367888 6 78777653 222222211111100 00 0011224
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.++..+|++.+|++|||+.|+++
T Consensus 241 ~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 241 CENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 567888999999999999999975
No 193
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.80 E-value=1.1e-19 Score=182.92 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=143.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..+|+|.+..... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 24 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~ 102 (288)
T 3kfa_A 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 102 (288)
T ss_dssp GTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHH
T ss_pred CCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHh
Confidence 4689999998764 78899999865432 3456666776644 268999999999999875
Q ss_pred -CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-c--------
Q 041082 466 -SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-Q-------- 535 (639)
Q Consensus 466 -~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-~-------- 535 (639)
....+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.......... .
T Consensus 103 ~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~ 179 (288)
T 3kfa_A 103 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179 (288)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGC
T ss_pred cccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcC
Confidence 3345899999999999999999999 55799999999999999999999999999987654332100 0
Q ss_pred -------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | | |+.|.... ....+.+.+...... ..+..+..
T Consensus 180 aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~ 239 (288)
T 3kfa_A 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYRM------------------ERPEGCPE 239 (288)
T ss_dssp CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC------------------CCCTTCCH
T ss_pred ChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhccCCC------------------CCCCCCCH
Confidence 0112367888 6 6 66666431 112222222211100 00112234
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+++..|++.+|++||++.||++.|+.+...
T Consensus 240 ~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 240 KVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 577888999999999999999999999988654
No 194
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.80 E-value=4.5e-20 Score=186.76 Aligned_cols=204 Identities=22% Similarity=0.373 Sum_probs=141.6
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhhh-hhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQYE-RAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++...+. ..+|+|.+..... .....+..|+..++ .+|+||+.+|+|.
T Consensus 32 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~ 111 (298)
T 3pls_A 32 GHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLL 111 (298)
T ss_dssp ETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHH
T ss_pred CCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHH
Confidence 46899999986432 3699998864332 23456666766643 3688999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----ccc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----FTQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~~~- 535 (639)
+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++........ ...
T Consensus 112 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 188 (298)
T 3pls_A 112 QFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188 (298)
T ss_dssp HHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCT
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCC
Confidence 999876667899999999999999999999 567999999999999999999999999999865432210 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | ||+.|.... .....+...+....... .
T Consensus 189 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~------------------~ 249 (298)
T 3pls_A 189 RLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-IDPFDLTHFLAQGRRLP------------------Q 249 (298)
T ss_dssp TCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCGGGHHHHHHTTCCCC------------------C
T ss_pred CCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-CCHHHHHHHhhcCCCCC------------------C
Confidence 0112367777 5 544443211 11222222222111100 0
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++|||+.+++++|+++...+
T Consensus 250 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l 289 (298)
T 3pls_A 250 PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL 289 (298)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence 1112235778889999999999999999999999987664
No 195
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.80 E-value=1e-19 Score=185.78 Aligned_cols=204 Identities=20% Similarity=0.295 Sum_probs=140.7
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++|
T Consensus 38 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~ 117 (316)
T 2xir_A 38 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117 (316)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTE
T ss_pred CCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCC
Confidence 46899999974 3468899999865432 22345556665532 2678999999
Q ss_pred CchhccccCCc---------------cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSSNY---------------ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~~~---------------~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.+++..... .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+
T Consensus 118 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~ 194 (316)
T 2xir_A 118 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGL 194 (316)
T ss_dssp EHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGG
T ss_pred cHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEECCCcc
Confidence 99998875322 2889999999999999999999 56899999999999999999999999999
Q ss_pred cccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 523 AKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 523 a~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
++......... .. ...+.++||| | | |+.|....... ..+...+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~~~~~~~~~~-- 271 (316)
T 2xir_A 195 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-- 271 (316)
T ss_dssp GSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHHHHHHHHTCCCC--
T ss_pred ccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHHHHHhccCccCC--
Confidence 98764332110 00 0122378888 6 6 77776532111 11111111111000
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
. +..+...+.+++.+|++.+|++||++.||++.|+.+.+..
T Consensus 272 ------~----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 272 ------A----------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp ------C----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------C----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 0 0111234677889999999999999999999999887543
No 196
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.79 E-value=6.1e-20 Score=191.86 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=136.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..|..+|+|++..........+..|+..++ .+||||+++|+|.+++..
T Consensus 100 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~ 179 (373)
T 2x4f_A 100 GRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIID 179 (373)
T ss_dssp ----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHH
T ss_pred CcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHh
Confidence 46899999986 468899999987655445567777877754 378999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee--cCCcceeeccccccccccccCCCcc---------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL--GNNMVAHLSDFGMAKLLLKEDQSFT--------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill--~~~~~~~i~dfgla~~~~~~~~~~~--------- 534 (639)
....+++..+..++.++++||+||| ..+|+||||||+||++ ++++.+||+|||+++..........
T Consensus 180 ~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a 256 (373)
T 2x4f_A 180 ESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLA 256 (373)
T ss_dssp TGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeC
Confidence 5567899999999999999999999 5679999999999999 5678999999999987654321100
Q ss_pred -c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | ||+.|....- ....+..+...... +.+. ........+
T Consensus 257 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~-~~~~~~~i~~~~~~------~~~~----------~~~~~~~~~ 319 (373)
T 2x4f_A 257 PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN-DAETLNNILACRWD------LEDE----------EFQDISEEA 319 (373)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS-HHHHHHHHHHTCCC------SCSG----------GGTTSCHHH
T ss_pred hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHhccCC------CChh----------hhccCCHHH
Confidence 0 1122368888 6 8888765310 01111111111000 0000 001122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 320 ~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 320 KEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcCCChhhCCCHHHHhc
Confidence 77889999999999999999986
No 197
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=186.96 Aligned_cols=219 Identities=19% Similarity=0.208 Sum_probs=147.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|++.++ .+|+||+++|+|.++
T Consensus 20 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~ 99 (396)
T 4eut_A 20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTV 99 (396)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHH
Confidence 568999999875 488999999875432 22345556666533 278999999999999
Q ss_pred cccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccccCCCc---
Q 041082 463 LYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 463 l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+.... ..+++..+..++.+++.||+||| ..+|+||||||.||++ ++++.+||+|||+|+.........
T Consensus 100 l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~ 176 (396)
T 4eut_A 100 LEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176 (396)
T ss_dssp TTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSS
T ss_pred HHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcccccc
Confidence 87632 23899999999999999999999 5679999999999999 888899999999998765432110
Q ss_pred -------cc------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHh---hCCCCcceeeeccc
Q 041082 534 -------TQ------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND---LLPISVMEVVDVNL 582 (639)
Q Consensus 534 -------~~------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~---~~~~~~~~~~d~~l 582 (639)
+. ...+.++||| | ||+.|.......... .+.+.. ..+......+....
T Consensus 177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ 255 (396)
T 4eut_A 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN-KEVMYKIITGKPSGAISGVQKAE 255 (396)
T ss_dssp SCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC-HHHHHHHHHSCCTTCCEEEECST
T ss_pred CCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch-HHHHHHHhcCCCcccchhheecc
Confidence 00 1112378999 7 899887643221211 122211 11221111111100
Q ss_pred cc------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 583 LS------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 583 ~~------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+ ...............+.++...|++.+|++||++.|+++.+.++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il 308 (396)
T 4eut_A 256 NGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (396)
T ss_dssp TCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHH
T ss_pred CCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHh
Confidence 00 000011122456667788999999999999999999999987764
No 198
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.79 E-value=1.8e-19 Score=185.48 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=141.6
Q ss_pred CCcCcceEEEecC-C-----ceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD-G-----MKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g-----~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.... + ..+|+|.+..... .....+..|+..++. +|+||+++|+
T Consensus 57 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 136 (333)
T 2i1m_A 57 GAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGD 136 (333)
T ss_dssp CSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEE
T ss_pred CCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCc
Confidence 4689999998643 2 4799999865432 233456666666432 5799999999
Q ss_pred chhccccC-------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 459 LEKCLYSS-------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 459 L~~~l~~~-------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
|.+++... ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.
T Consensus 137 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 213 (333)
T 2i1m_A 137 LLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARD 213 (333)
T ss_dssp HHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGGGEEEBCCCGGGCC
T ss_pred HHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCCCeEEECccccccc
Confidence 99988641 235789999999999999999999 56899999999999999999999999999986
Q ss_pred ccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceee
Q 041082 526 LLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVV 578 (639)
Q Consensus 526 ~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (639)
........ .. ...+.++||| | | |+.|...... ...+...+.......
T Consensus 214 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~----- 287 (333)
T 2i1m_A 214 IMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-NSKFYKLVKDGYQMA----- 287 (333)
T ss_dssp GGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-SHHHHHHHHHTCCCC-----
T ss_pred cccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch-hHHHHHHHhcCCCCC-----
Confidence 64332110 00 1123378888 6 6 7777653211 111222222211110
Q ss_pred eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 579 DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 579 d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+ ..+...+.+++..|++.+|++||++.||++.|+++....
T Consensus 288 ~~-------------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 328 (333)
T 2i1m_A 288 QP-------------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQED 328 (333)
T ss_dssp CC-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CC-------------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence 01 111235677889999999999999999999999886654
No 199
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.79 E-value=3.6e-20 Score=190.73 Aligned_cols=203 Identities=24% Similarity=0.433 Sum_probs=137.8
Q ss_pred CCcCcceEEEecC-----CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD-----GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.... +..+|+|.+..... .....+..|+..++ .+|+||+++|+|.
T Consensus 55 G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~ 134 (333)
T 1mqb_A 55 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALD 134 (333)
T ss_dssp CSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHH
T ss_pred CCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHH
Confidence 5689999998653 24599999875432 22345666776643 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---cc---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FT--- 534 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~--- 534 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ..
T Consensus 135 ~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 211 (333)
T 1mqb_A 135 KFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK 211 (333)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------C
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCC
Confidence 998765567999999999999999999999 567999999999999999999999999999876533211 00
Q ss_pred ------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 535 ------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 535 ------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
....+.++||| | | |+.|..... ...+.+.+..... . ..
T Consensus 212 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--~~~~~~~~~~~~~-----~-------------~~ 271 (333)
T 1mqb_A 212 IPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS--NHEVMKAINDGFR-----L-------------PT 271 (333)
T ss_dssp CCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHHTTCC-----C-------------CC
T ss_pred ccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHHCCCc-----C-------------CC
Confidence 00112367888 6 6 777764321 1111111111000 0 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++||++.||+++|+++....
T Consensus 272 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 272 PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1122335678899999999999999999999999886543
No 200
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.79 E-value=1.6e-19 Score=182.21 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=142.5
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|.++
T Consensus 28 G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~ 107 (291)
T 1xbb_A 28 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKY 107 (291)
T ss_dssp CSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHH
T ss_pred ccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEEEEeCCCCCHHHH
Confidence 468999999642 467899999865432 224566677776442 68999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ---- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~---- 535 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 108 l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 183 (291)
T 1xbb_A 108 LQQN-RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWP 183 (291)
T ss_dssp HHHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCC
T ss_pred HHhC-cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCC
Confidence 8753 35899999999999999999999 5689999999999999999999999999998764432110 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+.+.+...... . .+.
T Consensus 184 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~~~~--------~----------~~~ 243 (291)
T 1xbb_A 184 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAMLEKGERM--------G----------CPA 243 (291)
T ss_dssp GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTCCC--------C----------CCT
T ss_pred ceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCC--------C----------CCC
Confidence 0112378998 6 7 88887532 112222222211100 0 011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+...+.+++..|++.+|++||++.+|+++|+++-...
T Consensus 244 ~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 244 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 22335778889999999999999999999999886554
No 201
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.79 E-value=1.9e-19 Score=183.37 Aligned_cols=212 Identities=22% Similarity=0.254 Sum_probs=137.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++...+|..+|+|++..... .....+..|+..++ .+|+||++ |++.+.+.
T Consensus 32 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 110 (311)
T 3niz_A 32 GTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLD 110 (311)
T ss_dssp CSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHH
T ss_pred CCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHH
Confidence 568999999988899999999865432 22345666666644 26899998 47888777
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 111 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a 187 (311)
T 3niz_A 111 ENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRA 187 (311)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCC
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCC
Confidence 65566899999999999999999999 5689999999999999999999999999998764321110
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC---CCcceeeecc-----ccccccc--c
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP---ISVMEVVDVN-----LLSMEDK--Y 589 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~---~~~~~~~d~~-----l~~~~~~--~ 589 (639)
+. ...+.++||| | ||+.|...... ...+.......-. ....+.-+.. ....... .
T Consensus 188 PE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (311)
T 3niz_A 188 PDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD-DDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPW 266 (311)
T ss_dssp HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST-TTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCH
T ss_pred HHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcH
Confidence 00 1123478999 6 88888764322 1222222221111 0000000000 0000000 0
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.++..+|++.+|++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 267 SSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0000112235678999999999999999999985
No 202
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.79 E-value=2.2e-19 Score=181.00 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=136.6
Q ss_pred CCcCcceEEEec--CC--ceeeeEEechhh---hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ--DG--MKVAVKVFDLQY---ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g--~~vavK~l~~~~---~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~ 460 (639)
.++|.||++... ++ ..+|+|.+.... ......+..|+..++. +|+||+++|+|.
T Consensus 29 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~ 108 (291)
T 1u46_A 29 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLL 108 (291)
T ss_dssp ---CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHH
T ss_pred CCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCceeeEecccCCCHH
Confidence 468899999863 23 368999886442 2334566677766442 689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ-- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~-- 535 (639)
+++......+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 185 (291)
T 1u46_A 109 DRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRK 185 (291)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----
T ss_pred HHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCC
Confidence 988765456899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred -------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 -------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 -------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | | |+.|.... .-.+.+........... .
T Consensus 186 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~~--------------~ 246 (291)
T 1u46_A 186 VPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-----NGSQILHKIDKEGERLP--------------R 246 (291)
T ss_dssp CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTSCCCCC--------------C
T ss_pred CCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-----CHHHHHHHHHccCCCCC--------------C
Confidence 0112378888 6 6 78776532 11222221111110000 0
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+..+...+.+++.+|++.+|++||++.++++.|+++...
T Consensus 247 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 247 PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 112234577888999999999999999999999988643
No 203
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.79 E-value=4.5e-20 Score=188.11 Aligned_cols=196 Identities=21% Similarity=0.182 Sum_probs=124.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHH---------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMM---------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|||++...... ....+..+.... ..+||||+ +|+|.++
T Consensus 68 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~ 146 (311)
T 3p1a_A 68 GSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQH 146 (311)
T ss_dssp ETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHH
T ss_pred CCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHH
Confidence 568999999876 6899999987543221 111222222221 13689999 6789888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+......++|..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 147 ~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~ 223 (311)
T 3p1a_A 147 CEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYM 223 (311)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGC
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCcccc
Confidence 7765556999999999999999999999 557999999999999999999999999999876533211000
Q ss_pred ------cccccccccccCCCCCCCccCCCccchHHHHHhhC-CCCc---ceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 536 ------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLL-PISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 536 ------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~-~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...+.++||| +-|..+.+.+.... +... ..+....... +........+.+++.
T Consensus 224 aPE~~~~~~~~~~Diw-----------slG~il~el~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~li~ 286 (311)
T 3p1a_A 224 APELLQGSYGTAADVF-----------SLGLTILEVACNMELPHGGEGWQQLRQGYLPP------EFTAGLSSELRSVLV 286 (311)
T ss_dssp CGGGGGTCCSTHHHHH-----------HHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCH------HHHTTSCHHHHHHHH
T ss_pred CHhHhcCCCCchhhHH-----------HHHHHHHHHHhCCCCCCCccHHHHHhccCCCc------ccccCCCHHHHHHHH
Confidence 0112245555 22333333322211 1100 0000000000 001112345778889
Q ss_pred hccCCCCCCCCCHHHHHH
Q 041082 606 ECTAESPKQRINAKESVT 623 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~ 623 (639)
+|++.+|++|||+.|+++
T Consensus 287 ~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 287 MMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHSCSSTTTSCCHHHHHT
T ss_pred HHcCCChhhCcCHHHHHh
Confidence 999999999999999985
No 204
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.79 E-value=1.4e-19 Score=197.74 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=130.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHH---HHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVA---CDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e---~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .|..+|+|+++..... .......+ +..++ ++||||+++|+|
T Consensus 200 G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL 279 (689)
T 3v5w_A 200 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL 279 (689)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred ccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcH
Confidence 469999999864 5899999999754321 11222222 22221 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T-- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~-- 534 (639)
.+++... ..++......++.+|+.||+||| ..+|+||||||.|||+|.++.+||+|||+|+.+....... +
T Consensus 280 ~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~ 355 (689)
T 3v5w_A 280 HYHLSQH-GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG 355 (689)
T ss_dssp HHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGG
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcC
Confidence 9998753 35888888999999999999999 7789999999999999999999999999998775443210 0
Q ss_pred ----c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ----Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ----~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++|+| | ||+.|..+.-. .+..+......... +.. +...
T Consensus 356 YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~--~~~~~i~~~i~~~~------~~~----------p~~~ 417 (689)
T 3v5w_A 356 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--KDKHEIDRMTLTMA------VEL----------PDSF 417 (689)
T ss_dssp GCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGC--CCHHHHHHHHHHCC------CCC----------CTTS
T ss_pred ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhhcCCC------CCC----------CccC
Confidence 0 0112367888 6 88888753211 11111111111000 000 0011
Q ss_pred HHHHHHHHhhccCCCCCCCCC-----HHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRIN-----AKESV 622 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~-----m~~v~ 622 (639)
...+.++..+|++.+|++|++ +.||.
T Consensus 418 S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 418 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred CHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 123567888999999999998 56665
No 205
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=181.20 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--------------------------hhhhHHHHHHHHH------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--------------------------AFKSFDVACDMMK------------ 447 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--------------------------~~~~f~~e~~~~~------------ 447 (639)
.++|.||++.. .++..+|+|++...... ....+..|+.+++
T Consensus 24 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 103 (298)
T 2zv2_A 24 GSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVE 103 (298)
T ss_dssp --CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 46899999986 46789999998643211 1234566666643
Q ss_pred ----------hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceee
Q 041082 448 ----------KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHL 517 (639)
Q Consensus 448 ----------~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i 517 (639)
.+|+||+++|+|.+++.. ..+++.....++.++++||+||| ..+|+||||||.||+++.++.+||
T Consensus 104 ~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl 178 (298)
T 2zv2_A 104 VLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKI 178 (298)
T ss_dssp EEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCCEEE
Confidence 268999999999887643 46899999999999999999999 568999999999999999999999
Q ss_pred ccccccccccccCCC-----------ccccc-------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhC
Q 041082 518 SDFGMAKLLLKEDQS-----------FTQNT-------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL 570 (639)
Q Consensus 518 ~dfgla~~~~~~~~~-----------~~~~~-------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~ 570 (639)
+|||+++........ .+... .+.++||| | ||+.|..+. ....+.....
T Consensus 179 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-----~~~~~~~~~~ 253 (298)
T 2zv2_A 179 ADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE-----RIMCLHSKIK 253 (298)
T ss_dssp CCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHH
T ss_pred ecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc-----cHHHHHHHHh
Confidence 999999876533210 00000 12356888 6 787776531 1112211111
Q ss_pred CCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 571 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... +. +. .......+.+++.+|++.+|++||++.||++
T Consensus 254 ~~~~-~~--~~-----------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 254 SQAL-EF--PD-----------QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HCCC-CC--CS-----------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccC-CC--CC-----------ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 0000 00 00 0011234677889999999999999999875
No 206
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.79 E-value=1.6e-20 Score=188.08 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=135.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... |..+|+|.+.... ..+.+..|+..++ .+|+||+++|+|.+++..
T Consensus 32 G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 108 (278)
T 1byg_A 32 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 108 (278)
T ss_dssp CSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHH
T ss_pred CCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHh
Confidence 468899999875 7899999986432 3345666666632 268999999999998865
Q ss_pred CC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------cc-
Q 041082 466 SN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------TQ- 535 (639)
Q Consensus 466 ~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------~~- 535 (639)
.. ..+++..+.+++.++++||+||| ..+++||||||+||+++.++.+||+|||+++......... +.
T Consensus 109 ~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~ 185 (278)
T 1byg_A 109 RGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 185 (278)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHH
Confidence 32 23789999999999999999999 5679999999999999999999999999998654322110 00
Q ss_pred ---cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 536 ---NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 536 ---~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
...+.++||| | | |+.|.... ....+...+..... +. .+..+...+.+
T Consensus 186 ~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~--------~~----------~~~~~~~~l~~ 245 (278)
T 1byg_A 186 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGYK--------MD----------APDGCPPAVYE 245 (278)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTCC--------CC----------CCTTCCHHHHH
T ss_pred hCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhcCCC--------CC----------CcccCCHHHHH
Confidence 1123378888 6 6 77776532 11122222111100 00 01122335677
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
++..|++.+|++||++.|+++.|++++..
T Consensus 246 li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 246 VMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999998754
No 207
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=184.55 Aligned_cols=200 Identities=25% Similarity=0.278 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------------~Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..........+..|+..++ .+|+||+.
T Consensus 39 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~- 117 (337)
T 3ll6_A 39 GGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK- 117 (337)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-
T ss_pred CCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-
Confidence 468899999864 68899999885444433445555554422 25677885
Q ss_pred CCchhcccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--
Q 041082 457 GSLEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-- 532 (639)
Q Consensus 457 gsL~~~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-- 532 (639)
|+|.+++.. ....+++..+.+|+.+++.||+|||.. .++|+||||||.||+++.++.+||+|||+++........
T Consensus 118 g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~ 196 (337)
T 3ll6_A 118 GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSW 196 (337)
T ss_dssp EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC----
T ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccc
Confidence 788887754 344689999999999999999999932 234999999999999999999999999999876532110
Q ss_pred ---------------------ccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 533 ---------------------FTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 533 ---------------------~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
.+. ...+.++||| | ||+.|..+.. ..
T Consensus 197 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-----------------~~ 259 (337)
T 3ll6_A 197 SAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA-----------------KL 259 (337)
T ss_dssp ---------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred cccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh-----------------HH
Confidence 000 0012255666 4 5555543210 01
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
++++....... ...+...+.+++..|++.+|++||++.|+++.|+.+...
T Consensus 260 ~~~~~~~~~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 260 RIVNGKYSIPP------HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp ------CCCCT------TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhhcCcccCCc------ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 11111110000 001112356788899999999999999999999988764
No 208
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.79 E-value=1.4e-19 Score=181.81 Aligned_cols=197 Identities=21% Similarity=0.332 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH------------------------------------Hhh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM------------------------------------KKL 449 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------------------~~L 449 (639)
.++|.||++... ++..+|+|.+..... .+..|+..+ ..+
T Consensus 22 G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (284)
T 2a19_B 22 GGFGQVFKAKHRIDGKTYVIKRVKYNNE----KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFI 97 (284)
T ss_dssp SSSCCEEEEEETTTCCEEEEEEEECCSG----GGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEeccccH----HHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEE
Confidence 468899999875 689999999875432 333444442 137
Q ss_pred hhhcCCCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 450 VLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 450 v~ey~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|+||+++|+|.+++... ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 174 (284)
T 2a19_B 98 QMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKN 174 (284)
T ss_dssp EECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEESSC
T ss_pred EEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEEECcchhheeccc
Confidence 88999999999998652 346899999999999999999999 56899999999999999999999999999987654
Q ss_pred cCCCccc--------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 529 EDQSFTQ--------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 529 ~~~~~~~--------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
....... ...+.++||| | ||..|.... ..+....... .+. .
T Consensus 175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~~~~~~----~~~----~- 238 (284)
T 2a19_B 175 DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFTDLRDG----IIS----D- 238 (284)
T ss_dssp CSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHHHHHTT----CCC----T-
T ss_pred cccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHHHhhcc----ccc----c-
Confidence 3211000 0112356666 4 555443210 0111110000 000 0
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
.....+.+++.+|++.+|++||++.|+++.|..++....++
T Consensus 239 ---------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~ 279 (284)
T 2a19_B 239 ---------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKN 279 (284)
T ss_dssp ---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-----
T ss_pred ---------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCcc
Confidence 01123567888999999999999999999999987665443
No 209
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.79 E-value=1.1e-19 Score=185.88 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=137.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... ++..+|+|.+..... ....+..|+..++. +|+||+++|+|.+++..
T Consensus 16 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~ 94 (321)
T 1tki_A 16 GEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINT 94 (321)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTS
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecCcc-cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHh
Confidence 468999999865 578999999865432 23456667766442 68999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCc----c-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
....+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+|++|||+++......... +
T Consensus 95 ~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a 171 (321)
T 1tki_A 95 SAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYA 171 (321)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcC
Confidence 5567999999999999999999999 568999999999999997 7899999999998765432110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... .-.+.+........ .+++. ...+....+
T Consensus 172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~--~~~~~----------~~~~~s~~~ 234 (321)
T 1tki_A 172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-----TNQQIIENIMNAEY--TFDEE----------AFKEISIEA 234 (321)
T ss_dssp HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCC--CCCHH----------HHTTSCHHH
T ss_pred cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-----CHHHHHHHHHcCCC--CCChh----------hhccCCHHH
Confidence 00113378888 6 888887531 11111111110000 00000 011123456
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++|||+.|+++
T Consensus 235 ~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 235 MDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 78889999999999999999986
No 210
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.78 E-value=2.8e-19 Score=200.08 Aligned_cols=202 Identities=20% Similarity=0.306 Sum_probs=141.9
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|.+.... ......|..|+..++ .+||||+++|+|.++
T Consensus 401 G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~ 480 (656)
T 2j0j_A 401 GQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 480 (656)
T ss_dssp CSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHH
T ss_pred CCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCCCcHHHH
Confidence 4689999998743 4578999876432 223355666776644 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ------ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~------ 535 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 481 l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~ 557 (656)
T 2j0j_A 481 LQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 557 (656)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGG
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcc
Confidence 9765556899999999999999999999 568999999999999999999999999999876543211 000
Q ss_pred ---------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ---------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | | |+.|.... ....+...+...... ..+..+
T Consensus 558 y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~--~~~~~~~~i~~~~~~------------------~~~~~~ 617 (656)
T 2j0j_A 558 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGERL------------------PMPPNC 617 (656)
T ss_dssp GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHHHHHHTCCC------------------CCCTTC
T ss_pred eeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHcCCCC------------------CCCccc
Confidence 0112367888 6 4 77666431 111122222111000 011122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+|++.+|++||++.||+++|+.+.+.
T Consensus 618 ~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 618 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999988654
No 211
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=166.49 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=129.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCC-ccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIP-SSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.++++++.++. +|..+. ..+++|+|++|.+++..| ..|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 56777778764 677665 457899999999998755 45889999999999999999888889999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI 214 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 214 (639)
++++..+..|.++++|++|+|++|.|+ +..|..|..+++|+.|+|++|.+++..|..|..++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRIT------------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCC------------------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCC------------------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 999888888888777776666666554 56677888899999999999999999899999999
Q ss_pred CCCEEEccCCCCCCC
Q 041082 215 NLKRLNLYDNYLTSS 229 (639)
Q Consensus 215 ~L~~L~Ls~N~l~~~ 229 (639)
+|+.|++++|.+...
T Consensus 154 ~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 154 SLSTLNLLANPFNCN 168 (220)
T ss_dssp TCCEEECCSCCEECS
T ss_pred CCCEEEecCcCCcCC
Confidence 999999999988764
No 212
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=187.44 Aligned_cols=192 Identities=21% Similarity=0.270 Sum_probs=131.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..|..+|+|++..... .....+..|+..++. +|+||+++|+|.+++.
T Consensus 21 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~ 100 (347)
T 3zgw_A 21 GGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLEYCPGGELFDYII 100 (347)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEeCCCCCCHHHHHH
Confidence 46899999985 5789999999865432 223456677777542 7899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-c-----c----
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-F-----T---- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~-----~---- 534 (639)
.. ..+++.....++.+++.||+||| ..+|+||||||+||++++++.+||+|||+++........ . +
T Consensus 101 ~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~y~ 176 (347)
T 3zgw_A 101 SQ-DRLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKDYHLQTCCGSLAYA 176 (347)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC--------------CGGGC
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCCccccccCCccCcc
Confidence 43 35899999999999999999999 568999999999999999999999999998765432210 0 0
Q ss_pred --c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++||| | ||+.|..+ .+..+.......... .+ +.....
T Consensus 177 aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~------~~----------p~~~s~ 235 (347)
T 3zgw_A 177 APELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDD-----DNVMALYKKIMRGKY------DV----------PKWLSP 235 (347)
T ss_dssp CHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC------CC----------CTTCCH
T ss_pred CHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCC------CC----------CCCCCH
Confidence 0 0013367888 6 77777653 112221111111100 00 001112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.||++
T Consensus 236 ~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 236 SSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHcccCHhHCcCHHHHhc
Confidence 3566888999999999999999986
No 213
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.78 E-value=2.1e-19 Score=186.01 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=134.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|++.... ......+..|+..++. +|+||+. |++.+.
T Consensus 65 G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~ 143 (348)
T 1u5q_A 65 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDL 143 (348)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHH
T ss_pred CCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHH
Confidence 56899999985 578999999986543 2233456677766432 6899997 688887
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-c------c-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-F------T- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~------~- 534 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ . +
T Consensus 144 l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE 220 (348)
T 1u5q_A 144 LEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPE 220 (348)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHh
Confidence 7654556899999999999999999999 567999999999999999999999999999876543221 0 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|.... .-.+.+....... .+.... ......
T Consensus 221 ~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~-----~~~~~~~~~~~~~-----~~~~~~---------~~~~~~ 281 (348)
T 1u5q_A 221 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNE-----SPALQS---------GHWSEY 281 (348)
T ss_dssp HHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSC-----CCCCCC---------TTSCHH
T ss_pred hhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHhcC-----CCCCCC---------CCCCHH
Confidence 01123367888 6 787776431 1111111111110 010100 011224
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|++.+|++|||+.++++
T Consensus 282 l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 282 FRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcccChhhCcCHHHHhh
Confidence 567888999999999999999985
No 214
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.78 E-value=1.6e-19 Score=189.34 Aligned_cols=197 Identities=17% Similarity=0.270 Sum_probs=138.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .|..+|+|.+..........+..|+.+++ .+|+||+++|+|.+++..
T Consensus 62 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~ 141 (387)
T 1kob_A 62 GAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAA 141 (387)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTC
T ss_pred CCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHh
Confidence 468999999864 57899999987654444456677777754 268999999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCc----c-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
....+++.....++.+++.||+||| ..+|+||||||+||+++. ++.+||+|||+|+......... +
T Consensus 142 ~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~a 218 (387)
T 1kob_A 142 EDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA 218 (387)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccC
Confidence 5557899999999999999999999 568999999999999974 5779999999998765432110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ........+.... . .+++... ......+
T Consensus 219 PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~--~~~~~~~~i~~~~-~----~~~~~~~----------~~~s~~~ 281 (387)
T 1kob_A 219 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE--DDLETLQNVKRCD-W----EFDEDAF----------SSVSPEA 281 (387)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS--SHHHHHHHHHHCC-C----CCCSSTT----------TTSCHHH
T ss_pred chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC-C----CCCcccc----------ccCCHHH
Confidence 00122368888 6 888887531 1111111111100 0 0111110 1112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++..|++.+|++|||+.|+++
T Consensus 282 ~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 282 KDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhh
Confidence 77889999999999999999986
No 215
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.78 E-value=6.6e-19 Score=182.41 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=148.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhh-----------------hhHHHHHHHHH--------------------hh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAF-----------------KSFDVACDMMK--------------------KL 449 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~-----------------~~f~~e~~~~~--------------------~L 449 (639)
.++|.||++.. ++..+|+|.+........ ..+..|+..++ .+
T Consensus 42 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 120 (348)
T 2pml_X 42 GKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYI 120 (348)
T ss_dssp CSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEE
T ss_pred CCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEE
Confidence 46899999998 899999999876543211 56777777743 26
Q ss_pred hhhcCCCCCchhc------cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 450 VLEYMPHGSLEKC------LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 450 v~ey~~~gsL~~~------l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
|+||+++|+|.++ +... ...+++..+..++.+++.||+|||. ..+|+||||||+||+++.++.+||+|||+
T Consensus 121 v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 198 (348)
T 2pml_X 121 IYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGE 198 (348)
T ss_dssp EEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred EEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcCCCcEEEecccc
Confidence 8999999999998 5542 4568999999999999999999994 27899999999999999999999999999
Q ss_pred cccccccCCC---------ccc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCcc
Q 041082 523 AKLLLKEDQS---------FTQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISVM 575 (639)
Q Consensus 523 a~~~~~~~~~---------~~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~~ 575 (639)
++........ .+. ...+.++||| | ||+.|...... ...+.+.+.... +....
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~i~~~~~~~~~~~~ 277 (348)
T 2pml_X 199 SEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-LVELFNNIRTKNIEYPLDRN 277 (348)
T ss_dssp CEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-SHHHHHHHTSCCCCCCCSSS
T ss_pred ccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHhccCcCCccchh
Confidence 9875432110 010 0112278999 6 88888764211 122222222111 10000
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH----------HHHHhHHHHHHhhhc
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT----------RLLKIRDLLLKNVKR 638 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~----------~l~~~~~~~~~~~~~ 638 (639)
....+..... ...........+.+++.+|++.+|++||++.|+++ .++++...+.+++|+
T Consensus 278 ~~~~~~~~~~---~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T 2pml_X 278 HFLYPLTNKK---STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNIEDLREFSKELYKKRKK 347 (348)
T ss_dssp SSTTTTCC-----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHHHHHHHHHHHHHHTTC
T ss_pred hhhccccccc---cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCCHHHHHHHHHHHHHHhhc
Confidence 0000000000 00000122345678889999999999999999995 355555555565554
No 216
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.78 E-value=1.2e-19 Score=185.74 Aligned_cols=201 Identities=20% Similarity=0.349 Sum_probs=139.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|
T Consensus 36 G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 115 (322)
T 1p4o_A 36 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 115 (322)
T ss_dssp CSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred CCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcH
Confidence 468999998764 367899999864332 223456677776442 68999999999
Q ss_pred hhccccC---------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYSS---------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~---------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...+++..+.+++.++++||+||| ..+|+||||||.||+++.++.+|++|||+++......
T Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~ 192 (322)
T 1p4o_A 116 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 192 (322)
T ss_dssp HHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGG
T ss_pred HHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeEEECcCcccccccccc
Confidence 9988641 135689999999999999999999 5689999999999999999999999999998664332
Q ss_pred CCc--c---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF--T---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~--~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... . ....+.++||| | | |+.|.... ...+............
T Consensus 193 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~~------- 260 (322)
T 1p4o_A 193 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-----SNEQVLRFVMEGGLLD------- 260 (322)
T ss_dssp CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CHHHHHHHHHTTCCCC-------
T ss_pred ccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC-----CHHHHHHHHHcCCcCC-------
Confidence 110 0 00122367888 6 5 66665421 1112211111111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+..+...+.+++.+|++.+|++||++.|+++.|+++..
T Consensus 261 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 261 --------KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred --------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 011223356778899999999999999999999987744
No 217
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.3e-18 Score=192.16 Aligned_cols=145 Identities=28% Similarity=0.451 Sum_probs=78.6
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
+..|++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. | .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence 3456667777777777663 33 46667777777777777665544 66677777777777776642 2 466666666
Q ss_pred EEecCCCCCCCCC----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCC
Q 041082 152 DLDLSHNNLTDVQ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226 (639)
Q Consensus 152 ~L~Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 226 (639)
.|+|++|.|+++. +++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666666655431 33444444444444332 233344444444444444444333 44444444444444443
No 218
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.78 E-value=1.9e-19 Score=181.87 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=138.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~ 101 (294)
T 4eqm_A 22 GGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEY 101 (294)
T ss_dssp ETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHH
Confidence 46889999985 467899999885432 223456667776643 278999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------c--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------T-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------~-- 534 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 102 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~ 177 (294)
T 4eqm_A 102 IESH-GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQ 177 (294)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCS
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCcc
Confidence 8643 35899999999999999999999 5679999999999999999999999999998764332110 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | ||+.|.... .-.+............. ... ......
T Consensus 178 y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~~-~~~----------~~~~~~ 241 (294)
T 4eqm_A 178 YFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE-----TAVSIAIKHIQDSVPNV-TTD----------VRKDIP 241 (294)
T ss_dssp SCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS-----CHHHHHHHHHSSCCCCH-HHH----------SCTTSC
T ss_pred ccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhhccCCCc-chh----------cccCCC
Confidence 00112367888 6 777776421 11111111111110000 000 011123
Q ss_pred HHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhH
Q 041082 598 SFVFNLAMECTAESPKQRI-NAKESVTRLLKIR 629 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP-~m~~v~~~l~~~~ 629 (639)
..+.+++.+|++.+|++|| ++.++.+.|+.+.
T Consensus 242 ~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 242 QSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 4567788999999999999 8999999988764
No 219
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.78 E-value=6.1e-19 Score=176.27 Aligned_cols=195 Identities=20% Similarity=0.242 Sum_probs=137.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+|+|.++.... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 97 (276)
T 2yex_A 18 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97 (276)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB
T ss_pred CCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHh
Confidence 468899999875 688999999875432 23345666666643 27899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------ 532 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------ 532 (639)
. ...+++.....++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 98 ~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y 173 (276)
T 2yex_A 98 P-DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173 (276)
T ss_dssp T-TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGG
T ss_pred h-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCc
Confidence 4 345899999999999999999999 568999999999999999999999999999765322100
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|..........+..|....... .+ .....
T Consensus 174 ~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~------------~~~~~ 235 (276)
T 2yex_A 174 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------NP------------WKKID 235 (276)
T ss_dssp CCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTS------TT------------GGGSC
T ss_pred cChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccccc------Cc------------hhhcC
Confidence 000 0113368888 6 88888764322222333333211100 00 01112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.++..+|++.+|++|||+.||++
T Consensus 236 ~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 236 SAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 24567889999999999999999975
No 220
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.77 E-value=4.7e-19 Score=181.93 Aligned_cols=202 Identities=27% Similarity=0.432 Sum_probs=138.3
Q ss_pred CCcCcceEEEec-CCce--eeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK--VAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~--vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++.. +++|.+.... ......+..|+..++ .+|+||+++|+|.+
T Consensus 36 G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 115 (327)
T 1fvr_A 36 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLD 115 (327)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred CCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHH
Confidence 468899999864 4543 4888875422 223445666766643 26899999999999
Q ss_pred ccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++.... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~ 192 (327)
T 1fvr_A 116 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 192 (327)
T ss_dssp HHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESS
T ss_pred HHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeEEEcccCcCccc
Confidence 886532 36899999999999999999999 668999999999999999999999999999754
Q ss_pred cccCCC----cc------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 527 LKEDQS----FT------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 527 ~~~~~~----~~------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
...... .+ . ...+.++||| | | |+.|... ....+......... .+.
T Consensus 193 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~-----~~~- 261 (327)
T 1fvr_A 193 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGY-----RLE- 261 (327)
T ss_dssp CEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHGGGTC-----CCC-
T ss_pred cccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC-----CcHHHHHHHhhcCC-----CCC-
Confidence 322111 00 0 0123378898 6 6 8877653 12222221111110 000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+..+...+.+++.+|++.+|++||++.|+++.|.++.+.
T Consensus 262 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 262 ---------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp ---------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ---------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 0111223567888999999999999999999999987654
No 221
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.77 E-value=4e-19 Score=182.42 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=137.1
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 41 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 120 (327)
T 2yfx_A 41 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDL 120 (327)
T ss_dssp -CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEH
T ss_pred CCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcH
Confidence 468999998743 46789999985332 223345666666543 278999999999
Q ss_pred hhccccCC------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccC
Q 041082 460 EKCLYSSN------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~~------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~ 530 (639)
.+++.... ..+++..+..++.+++.||+||| ..+|+||||||+||+++. +..+|++|||+++......
T Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~ 197 (327)
T 2yfx_A 121 KSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAS 197 (327)
T ss_dssp HHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC--
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECcccccccccccc
Confidence 99987532 35899999999999999999999 568999999999999984 4569999999997653322
Q ss_pred CC--cc---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QS--FT---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~--~~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.. .. ....+.++||| | | |+.|.... ....+.+++.......
T Consensus 198 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~~---------- 265 (327)
T 2yfx_A 198 YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFVTSGGRMD---------- 265 (327)
T ss_dssp ----CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCCCC----------
T ss_pred ccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc--CHHHHHHHHhcCCCCC----------
Confidence 11 00 01123378888 6 6 77766431 1112222222111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+..+...+.+++.+|++.+|++||++.||+++|+.+...
T Consensus 266 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 266 --------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 0111223567888999999999999999999999988653
No 222
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.77 E-value=5.4e-20 Score=192.85 Aligned_cols=198 Identities=16% Similarity=0.062 Sum_probs=130.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechh---hhhhhhhHHHHHHH---------------H---------------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQ---YERAFKSFDVACDM---------------M--------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~---~~~~~~~f~~e~~~---------------~--------------------- 446 (639)
.++|.||++.. .+|..+|||++... .......+..|+.+ .
T Consensus 84 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T 3byv_A 84 EDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 163 (377)
T ss_dssp ETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCcccccc
Confidence 46899999986 56899999998632 22223445555522 1
Q ss_pred -----------HhhhhhcCCCCCchhccccC------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee
Q 041082 447 -----------KKLVLEYMPHGSLEKCLYSS------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL 509 (639)
Q Consensus 447 -----------~~Lv~ey~~~gsL~~~l~~~------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill 509 (639)
..+||||+ +|+|.+++... ...++|..+.+|+.++++||+||| ..+|+||||||+||++
T Consensus 164 ~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll 239 (377)
T 3byv_A 164 RLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVL 239 (377)
T ss_dssp ------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred ccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEE
Confidence 23677888 68999888641 234557889999999999999999 5679999999999999
Q ss_pred cCCcceeeccccccccccccCCCc-------cc----c-----------ccccccccc--c-------CCCCCCCccCCC
Q 041082 510 GNNMVAHLSDFGMAKLLLKEDQSF-------TQ----N-----------TNTCHHRIY--G-------TRRNPQMNFFSG 558 (639)
Q Consensus 510 ~~~~~~~i~dfgla~~~~~~~~~~-------~~----~-----------~~~~~~dvy--G-------tg~~p~~~~~~~ 558 (639)
+.++.+||+|||+|+......... +. . ..+.++||| | ||+.|......
T Consensus 240 ~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~- 318 (377)
T 3byv_A 240 DQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAA- 318 (377)
T ss_dssp CTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred cCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccc-
Confidence 999999999999998643321100 00 0 123356676 5 66665432100
Q ss_pred ccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHhHHHHH
Q 041082 559 EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT--RLLKIRDLLL 633 (639)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~--~l~~~~~~~~ 633 (639)
.+........ .......+.+++.+|++.+|++||++.|+++ .+..+++...
T Consensus 319 ----------------~~~~~~~~~~--------~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~ 371 (377)
T 3byv_A 319 ----------------LGGSEWIFRS--------CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371 (377)
T ss_dssp -----------------CCSGGGGSS--------CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHHH
T ss_pred ----------------ccchhhhhhh--------ccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHHH
Confidence 0000000000 0111234677889999999999999999996 5555555543
No 223
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=187.35 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=132.0
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhhhhh-----------hhHHHHHHHH------------------------H
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYERAF-----------KSFDVACDMM------------------------K 447 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~~~~-----------~~f~~e~~~~------------------------~ 447 (639)
.++|.||++... .+..+|+|.......... ..+..++... .
T Consensus 48 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~ 127 (345)
T 2v62_A 48 GGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYR 127 (345)
T ss_dssp ----CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEE
T ss_pred cCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEE
Confidence 468999999875 568899998865432111 1122222221 1
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc--ceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--VAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--~~~i~dfgla~~ 525 (639)
.+|+||+ +|+|.+++.... .+++..+.+|+.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+|+.
T Consensus 128 ~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~ 202 (345)
T 2v62_A 128 FMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYR 202 (345)
T ss_dssp EEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTSEEECCCTTCEE
T ss_pred EEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCcEEEEeCCCcee
Confidence 3789999 899999987533 6899999999999999999999 56899999999999999877 999999999987
Q ss_pred ccccCCCc-------cc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 526 LLKEDQSF-------TQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 526 ~~~~~~~~-------~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+....... .. ...+.++||| | ||+.|..........+........+. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-~ 281 (345)
T 2v62_A 203 YCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDE-L 281 (345)
T ss_dssp SSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHT-T
T ss_pred cccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhccc-c
Confidence 64322100 00 0112367888 6 77777653222211111111111000 0
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+..... ...+...+.+++.+|++.+|++||++.+|++.|+.+
T Consensus 282 ~~~~~~~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 282 PQSVLKWAP---------SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp THHHHHHSC---------TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred cHHHHhhcc---------ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 000000000 002234677888999999999999999999999865
No 224
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=185.56 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++....+..+|+|++.... ......+..|+..++. +||| +.+|+|.++
T Consensus 20 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~ 98 (343)
T 3dbq_A 20 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 98 (343)
T ss_dssp CSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHH
T ss_pred CCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CCCCCHHHH
Confidence 56899999998889999999986543 2233556666666432 5677 457799888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+.. ...+++..+..|+.++++||+||| ..+|+||||||+||+++ ++.+||+|||+++........
T Consensus 99 l~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 173 (343)
T 3dbq_A 99 LKK-KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 173 (343)
T ss_dssp HHH-SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCC
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCc
Confidence 875 346899999999999999999999 56799999999999997 678999999999876433211
Q ss_pred ---ccc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 533 ---FTQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 533 ---~~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|..+.... ....... +++.....
T Consensus 174 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~----~~~~~~~--------~~~~~~~~ 241 (343)
T 3dbq_A 174 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ----ISKLHAI--------IDPNHEIE 241 (343)
T ss_dssp SSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH----HHHHHHH--------HCTTSCCC
T ss_pred CcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH----HHHHHHH--------hcCCcccC
Confidence 000 0112357888 6 777776532111 1111111 11111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +..+...+.+++..|++.+|++||||.|+++.
T Consensus 242 ~------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 242 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 0 00111246678889999999999999999853
No 225
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.77 E-value=6.8e-19 Score=178.60 Aligned_cols=193 Identities=25% Similarity=0.353 Sum_probs=135.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++++|.+++.
T Consensus 33 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 112 (303)
T 3a7i_A 33 GSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE 112 (303)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT
T ss_pred cCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh
Confidence 46899999975 4688999999875542 23456666766643 26899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---------- 534 (639)
. ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 113 ~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a 187 (303)
T 3a7i_A 113 P--GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 187 (303)
T ss_dssp T--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCC
T ss_pred c--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccC
Confidence 4 45899999999999999999999 56899999999999999999999999999987654321100
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ........+....+ +.+. ......+
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~--------~~~~----------~~~~~~l 247 (303)
T 3a7i_A 188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL--HPMKVLFLIPKNNP--------PTLE----------GNYSKPL 247 (303)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC--------CCCC----------SSCCHHH
T ss_pred HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc--CHHHHHHHhhcCCC--------CCCc----------cccCHHH
Confidence 01122367887 5 777776431 11111111111100 0000 0112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++..|++.+|++|||+.||++.
T Consensus 248 ~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 248 KEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHHHHcCCChhhCcCHHHHhhC
Confidence 778899999999999999999864
No 226
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.77 E-value=4.6e-20 Score=192.99 Aligned_cols=209 Identities=14% Similarity=0.096 Sum_probs=134.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHH---HHHH---------------------------------
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVA---CDMM--------------------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e---~~~~--------------------------------- 446 (639)
.++|.||++... ++..+|+|++..... .....+..| +..+
T Consensus 73 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~ 152 (371)
T 3q60_A 73 GDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLS 152 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCS
T ss_pred CCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeecc
Confidence 568999999864 789999999876432 112233333 1111
Q ss_pred ----------HhhhhhcCCCCCchhccccCCccCCHHHH------HHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec
Q 041082 447 ----------KKLVLEYMPHGSLEKCLYSSNYILDIFQR------LNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510 (639)
Q Consensus 447 ----------~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~------~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~ 510 (639)
..+||||++ |+|.+++......+.+..+ ..++.++++||+||| ..+|+||||||+|||++
T Consensus 153 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll~ 228 (371)
T 3q60_A 153 PGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIM 228 (371)
T ss_dssp CC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEC
T ss_pred CCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCccCcCCHHHEEEC
Confidence 257889999 8999998753334566666 889999999999999 56799999999999999
Q ss_pred CCcceeeccccccccccccCCC--cc------c------cccccccccc--c-------CCCCCCCccCCCccchHHHHH
Q 041082 511 NNMVAHLSDFGMAKLLLKEDQS--FT------Q------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN 567 (639)
Q Consensus 511 ~~~~~~i~dfgla~~~~~~~~~--~~------~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~ 567 (639)
.++.+||+|||+|+........ .+ . ...+.++||| | ||+.|........... |..
T Consensus 229 ~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~--~~~ 306 (371)
T 3q60_A 229 PDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGS--WKR 306 (371)
T ss_dssp TTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTC--CCB
T ss_pred CCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccc--hhh
Confidence 9999999999999876543211 00 0 1123478888 6 7887776432111100 000
Q ss_pred hhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHhHHH
Q 041082 568 DLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT--RLLKIRDL 631 (639)
Q Consensus 568 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~--~l~~~~~~ 631 (639)
.. ........... .........+.+++.+|++.+|++|||+.|+++ .+.++.+.
T Consensus 307 ~~----~~~~~~~~~~~------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~ 362 (371)
T 3q60_A 307 PS----LRVPGTDSLAF------GSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNE 362 (371)
T ss_dssp CC----TTSCCCCSCCC------TTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHH
T ss_pred hh----hhhccccccch------hhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHH
Confidence 00 00000000000 001122345677888999999999999999985 34444443
No 227
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.77 E-value=4.9e-19 Score=179.53 Aligned_cols=196 Identities=22% Similarity=0.302 Sum_probs=134.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+++|.+..........+..|+..++. +|+||+++|+|.+++..
T Consensus 30 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~ 109 (302)
T 2j7t_A 30 GAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLE 109 (302)
T ss_dssp STTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHh
Confidence 568999999876 478999999876655555667777766442 68999999999988865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC-----------CCcc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED-----------QSFT 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~-----------~~~~ 534 (639)
....+++..+..++.++++||+||| ..+++||||||+||+++.++.+||+|||++....... +..+
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP 186 (302)
T 2j7t_A 110 LDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAP 186 (302)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCC
Confidence 4556899999999999999999999 5689999999999999999999999999975432110 0000
Q ss_pred ---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
....+.++||| | ||+.|.... .-.+.............. .+...
T Consensus 187 E~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~~~ 248 (302)
T 2j7t_A 187 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLL-------------TPSKW 248 (302)
T ss_dssp HHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCS-------------SGGGS
T ss_pred eeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHHhccCCcccC-------------Ccccc
Confidence 01123367888 6 777776531 111111111000000000 01112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++|||+.|+++
T Consensus 249 ~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 249 SVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp CHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 235677889999999999999999985
No 228
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.7e-18 Score=173.01 Aligned_cols=164 Identities=25% Similarity=0.382 Sum_probs=108.3
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.++.. + .+..+++|++|+|++|.+++..| +..+++|+.|++++|.+.+ + ..+..+++|++|+|+
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 466777777777643 3 36677777777777777775433 7777777777777777765 2 237777777777777
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+|++++. ..+..+++|++|++++|.++++ .+++|+.|++++|++++..| +..+++|+.|++++|.+++. |
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~- 194 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R- 194 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-
Confidence 7777653 3566777777777777777654 25566666666666665444 55666666666666666554 2
Q ss_pred ccCCCCCCCEEEccCCCCCC
Q 041082 209 TFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~ 228 (639)
.+..+++|+.|++++|.++.
T Consensus 195 ~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEECcCCcccC
Confidence 25666666666666666554
No 229
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=179.93 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=133.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. .++..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (295)
T 2clq_A 33 GTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRS 112 (295)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHH
T ss_pred cCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHh
Confidence 46899999985 467899999987655444566777776643 268999999999998875
Q ss_pred CC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC-----c----
Q 041082 466 SN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS-----F---- 533 (639)
Q Consensus 466 ~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~-----~---- 533 (639)
.. ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+|||+++........ .
T Consensus 113 ~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y 189 (295)
T 2clq_A 113 KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQY 189 (295)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGG
T ss_pred hccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccc
Confidence 32 34678888999999999999999 568999999999999997 899999999999866432110 0
Q ss_pred --cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 --TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 --~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+. ...+.++||| | ||+.|....-...... +...... ..+.+ +...
T Consensus 190 ~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~------~~~~~----------~~~~ 251 (295)
T 2clq_A 190 MAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM--FKVGMFK------VHPEI----------PESM 251 (295)
T ss_dssp CCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH--HHHHHHC------CCCCC----------CTTS
T ss_pred cChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH--Hhhcccc------ccccc----------cccC
Confidence 00 0123467888 6 7877764321110000 0000000 00111 1112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++||++.|+++
T Consensus 252 ~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 252 SAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp CHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 235667889999999999999999985
No 230
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.77 E-value=1e-18 Score=187.61 Aligned_cols=192 Identities=22% Similarity=0.274 Sum_probs=137.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 27 G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~ 106 (476)
T 2y94_A 27 GTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDY 106 (476)
T ss_dssp CSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHH
Confidence 468999999865 689999999875432 22345667777644 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.........+
T Consensus 107 l~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~ 182 (476)
T 2y94_A 107 ICK-NGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 182 (476)
T ss_dssp TTS-SSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTC
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeE
Confidence 874 345899999999999999999999 67899999999999999999999999999987654321100
Q ss_pred --c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++||| | ||+.|.++. ...+.......... ..| .....
T Consensus 183 aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~~---~~p-------------~~~s~ 241 (476)
T 2y94_A 183 APEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD-----HVPTLFKKICDGIF---YTP-------------QYLNP 241 (476)
T ss_dssp CHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SSHHHHHHHHTTCC---CCC-------------TTCCH
T ss_pred ChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCCc---CCC-------------ccCCH
Confidence 0 0112367888 6 788777532 11122111111100 000 01112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.||++
T Consensus 242 ~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 242 SVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHh
Confidence 4667888999999999999999986
No 231
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1e-18 Score=181.87 Aligned_cols=169 Identities=27% Similarity=0.229 Sum_probs=123.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCcccc-CCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.+++++++++. +|..+. +.+++|+|++|.|++..+..|. ++++|+.|+|++|++.+..|..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46667777764 676665 4689999999999987777777 8999999999999999888888999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccc---cCCCCCcEEEcccCCCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFI---FNASKLSILELQKNSFFDL 205 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~ 205 (639)
+|++..+..|.++++|++|+|++|.|+.+ .+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++.++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99988777888888888888888887753 24566666666666654433333 3456666666666666655
Q ss_pred CccccCCCCC--CCEEEccCCCCC
Q 041082 206 IPNTFGNLIN--LKRLNLYDNYLT 227 (639)
Q Consensus 206 ~p~~~~~l~~--L~~L~Ls~N~l~ 227 (639)
.+..|..++. ++.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555555554 255666666554
No 232
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.77 E-value=6.2e-19 Score=178.59 Aligned_cols=189 Identities=20% Similarity=0.169 Sum_probs=130.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH-------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM-------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|.+... ..+..|+..+ ..+|+||+++|+|.
T Consensus 29 G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~ 103 (299)
T 3m2w_A 29 GINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELF 103 (299)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHH
Confidence 46889999986 46789999998632 2233333331 13789999999999
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCcccc
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQN 536 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~~~~ 536 (639)
+++... ...+++..+..++.+++.||+||| ..+|+||||||+||+++. ++.+||+|||+|+......
T Consensus 104 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~------ 174 (299)
T 3m2w_A 104 SRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEK------ 174 (299)
T ss_dssp HHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCG------
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccccccccccc------
Confidence 998753 346899999999999999999999 667999999999999998 7889999999998764322
Q ss_pred ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhc
Q 041082 537 TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607 (639)
Q Consensus 537 ~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C 607 (639)
.+.++||| | ||+.|........ .. ..... .+....... ...........+.+++.+|
T Consensus 175 -~~~~~DiwslG~il~el~tg~~pf~~~~~~~-----~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~li~~~ 240 (299)
T 3m2w_A 175 -YDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-----IS-PGMKT---RIRMGQYEF----PNPEWSEVSEEVKMLIRNL 240 (299)
T ss_dssp -GGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCC---SSCTTCCSS----CHHHHTTSCHHHHHHHHHH
T ss_pred -CCchhhHHHHHHHHHHHHHCCCCCCCCcchh-----hh-HHHHH---HHhhccccC----CchhcccCCHHHHHHHHHH
Confidence 33478999 6 8888875321100 00 00000 000000000 0000012234577888999
Q ss_pred cCCCCCCCCCHHHHHH
Q 041082 608 TAESPKQRINAKESVT 623 (639)
Q Consensus 608 ~~~~p~~RP~m~~v~~ 623 (639)
++.+|++|||+.|+++
T Consensus 241 l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 241 LKTEPTQRMTITEFMN 256 (299)
T ss_dssp TCSSTTTSCCHHHHHT
T ss_pred cccChhhCCCHHHHhc
Confidence 9999999999999986
No 233
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=178.11 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=131.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..|..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 22 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (278)
T 3cok_A 22 GSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRY 101 (278)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHH
T ss_pred CCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHH
Confidence 46889999986 5688999999865432 22345666666643 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++.........
T Consensus 102 l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y 178 (278)
T 3cok_A 102 LKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNY 178 (278)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---------------
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCc
Confidence 8765567899999999999999999999 5689999999999999999999999999998654221100
Q ss_pred --cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|...... .+.+........ ..+.....
T Consensus 179 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----------------~~~~~~~~~~~~----~~~~~~~~ 237 (278)
T 3cok_A 179 ISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV-----------------KNTLNKVVLADY----EMPSFLSI 237 (278)
T ss_dssp -------------CTHHHHHHHHHHHHHHSSCSSCCCSC-----------------C-----CCSSCC----CCCTTSCH
T ss_pred CCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH-----------------HHHHHHHhhccc----CCccccCH
Confidence 00 0112366777 5 66666542110 000000000000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++||++.+|++
T Consensus 238 ~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 238 EAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHcccCHhhCCCHHHHhc
Confidence 5678889999999999999999986
No 234
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.9e-20 Score=206.11 Aligned_cols=188 Identities=23% Similarity=0.227 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCCCCcccccCCCC-CCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC
Q 041082 10 LSFQVFVLKGHVTDDPTNFLAKNWNT-SSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88 (639)
Q Consensus 10 ~~~~ll~~k~~~~~~~~~~l~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l 88 (639)
+.++|+++...........-.. |.. .+..+.|.+++++. .+++.|+|.++.+... +.. .|+.++|+.|.|
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i 203 (727)
T 4b8c_D 133 TKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSI 203 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred chhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCcccc
Confidence 3456666665431111111112 533 34566798888875 5789999999888753 332 345556666655
Q ss_pred Cc---------cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 89 SG---------SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 89 ~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
.+ ..|..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 43 23444444444555555544444 33444444444444444444444 344444444333333333333
Q ss_pred CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 160 l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
| + .+|..++.+++|+.|+|++|.+. .+|..|+.+++|++|+|++|.+++
T Consensus 282 l------------------~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 282 L------------------T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp C------------------S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred C------------------C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 2 2 33444555555555555555554 234445555555555555555543
No 235
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.76 E-value=2.3e-19 Score=184.42 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=104.2
Q ss_pred hhhhhcCCCCCchhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+|+||+++|+|.+++.... ...++..+.+++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.
T Consensus 137 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 213 (332)
T 3qd2_B 137 YIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTA 213 (332)
T ss_dssp EEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccc
Confidence 47889999999999987632 34678888999999999999999 56899999999999999999999999999987
Q ss_pred ccccCCCcc------------cccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCC-cceeeeccccccccc
Q 041082 526 LLKEDQSFT------------QNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDK 588 (639)
Q Consensus 526 ~~~~~~~~~------------~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 588 (639)
......... ...++. ...++ |....+..|+|+-|..+.+.+....+.. ..+.........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~--- 290 (332)
T 3qd2_B 214 MDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLK--- 290 (332)
T ss_dssp CSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTC---
T ss_pred cccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccC---
Confidence 754421100 000010 00000 1111222233344444443332111110 000000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...........+.+++.+|++.+|++||++.|+++
T Consensus 291 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 291 FPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp CCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred CCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 00112334455678999999999999999999986
No 236
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.76 E-value=6.2e-19 Score=185.42 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=129.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++....+..+|||++.... ......+..|+..++. +||| +.+|+|.++
T Consensus 67 G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~ 145 (390)
T 2zmd_A 67 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 145 (390)
T ss_dssp CSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHH
Confidence 56899999988889999999986543 2334556667666432 5677 457789888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~- 534 (639)
+... ..+++..+..|+.++++||+||| ..+|+||||||.||+++ ++.+||+|||+++.+...... .+
T Consensus 146 l~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 220 (390)
T 2zmd_A 146 LKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAV 220 (390)
T ss_dssp HHHC-SSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCC
Confidence 8653 36889899999999999999999 67899999999999995 588999999999876433210 00
Q ss_pred -----c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 535 -----Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 535 -----~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
. ...+.++||| | ||+.|..... .-...+... +++.....
T Consensus 221 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~----~~~~~~~~~--------~~~~~~~~ 288 (390)
T 2zmd_A 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII----NQISKLHAI--------IDPNHEIE 288 (390)
T ss_dssp GGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC----CHHHHHHHH--------HCTTSCCC
T ss_pred CccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh----HHHHHHHHH--------hCccccCC
Confidence 0 0122357887 6 7777765321 111111111 11111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +......+.+++.+|++.+|++||++.||++.
T Consensus 289 ~------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 289 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------CccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 0 00012246678889999999999999999853
No 237
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=181.71 Aligned_cols=210 Identities=17% Similarity=0.164 Sum_probs=131.1
Q ss_pred CCcCcceEEE------ecCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKAR------IQDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~------l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~g 457 (639)
.++|.||++. ...+..+|+|++..... ..+..+...++ .+||||+++|
T Consensus 76 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g 152 (365)
T 3e7e_A 76 GAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYG 152 (365)
T ss_dssp CSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSC
T ss_pred cCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCC
Confidence 5689999993 55688999999875433 23444443321 3789999999
Q ss_pred Cchhcccc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----------Ccceeeccccc
Q 041082 458 SLEKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-----------NMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-----------~~~~~i~dfgl 522 (639)
+|.+++.. ....++|..+..|+.++++||+||| ..+|+||||||+|||++. ++.+||+|||+
T Consensus 153 ~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~ 229 (365)
T 3e7e_A 153 TLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQ 229 (365)
T ss_dssp BHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTT
T ss_pred cHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccccCCEEEeeCch
Confidence 99999864 3456999999999999999999999 678999999999999998 89999999999
Q ss_pred cccccccCCC--cccccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCc----ceeeeccccccccccccc
Q 041082 523 AKLLLKEDQS--FTQNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 523 a~~~~~~~~~--~~~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~d~~l~~~~~~~~~~ 592 (639)
|+.+...... .....++. ...++ |....+..|+|+-|..+.+.+....|... ...++...... .
T Consensus 230 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~-----~- 303 (365)
T 3e7e_A 230 SIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRL-----P- 303 (365)
T ss_dssp CEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTC-----S-
T ss_pred hhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeechhcccc-----C-
Confidence 9765421110 00001110 00000 11112222334444444444444333210 01111111110 1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHHHhHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQR-INAKESVTRLLKIRDL 631 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~R-P~m~~v~~~l~~~~~~ 631 (639)
..+ .+-++...|++.+|.+| |++.++.+.|+++.+.
T Consensus 304 ~~~---~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 304 HLD---MWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp SHH---HHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cHH---HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 122 33456668888999888 6788888888877543
No 238
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.76 E-value=1.6e-18 Score=174.25 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=131.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|++.++ .+|+||+++|+|.+.+.
T Consensus 33 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 112 (285)
T 3is5_A 33 GAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIV 112 (285)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHH
T ss_pred CCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHH
Confidence 568999999864 5789999998765422 3456677777644 26899999999998875
Q ss_pred c---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCc----c
Q 041082 465 S---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSF----T 534 (639)
Q Consensus 465 ~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~----~ 534 (639)
. ....+++..+..|+.++++||+||| ..+|+||||||+||+++ .++.+||+|||+++......... +
T Consensus 113 ~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t 189 (285)
T 3is5_A 113 SAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGT 189 (285)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTT
T ss_pred hhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccc
Confidence 4 2356899999999999999999999 56899999999999994 46889999999998765332110 0
Q ss_pred c---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCCcceeeeccccccccccccchHH
Q 041082 535 Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
. ...+.++||| | ||+.|.... ...+...... ....... .. . .
T Consensus 190 ~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~~~-~~--~-----------~ 250 (285)
T 3is5_A 190 ALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGT-----SLEEVQQKATYKEPNYAV-EC--R-----------P 250 (285)
T ss_dssp GGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCCCC-----C-----------C
T ss_pred cCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCC-----CHHHHHhhhccCCccccc-cc--C-----------c
Confidence 0 0122378888 6 788876531 1211111110 0000000 00 0 0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++||++.||++
T Consensus 251 ~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 251 LTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1124567888999999999999999985
No 239
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.76 E-value=1.1e-18 Score=183.59 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=96.7
Q ss_pred CcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
++|.||++... .+..+|+|++.... ......+..|+.+++. +|+||+++|+|.+++.
T Consensus 39 ~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 118 (389)
T 3gni_B 39 DLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLIC 118 (389)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH
T ss_pred CceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHh
Confidence 68899999875 68999999997654 2234556667766543 6899999999999886
Q ss_pred cC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.. ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 119 THFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 53 345899999999999999999999 567999999999999999999999999988654
No 240
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.76 E-value=1.3e-18 Score=175.52 Aligned_cols=213 Identities=23% Similarity=0.253 Sum_probs=134.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++ ++.+.+
T Consensus 13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~ 91 (292)
T 3o0g_A 13 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYF 91 (292)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHH
T ss_pred CCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHH
Confidence 468999999875 578999999865432 22345566666643 268999975 555555
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----c----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----T---- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----~---- 534 (639)
......+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 92 ~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~ 168 (292)
T 3o0g_A 92 DSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYR 168 (292)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGC
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCc
Confidence 544456899999999999999999999 5689999999999999999999999999998764322110 0
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC-C-c---ceeeecccccc---cccc
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI-S-V---MEVVDVNLLSM---EDKY 589 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~-~-~---~~~~d~~l~~~---~~~~ 589 (639)
....+.++||| | ||+.|..........+....+... +. . . .+..+..-... ....
T Consensus 169 aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (292)
T 3o0g_A 169 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSL 248 (292)
T ss_dssp CHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCC
T ss_pred ChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcch
Confidence 01124478999 7 677775322111111112211111 10 0 0 00000000000 0000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.++..+|++.+|++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 249 VNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0001122345668889999999999999999975
No 241
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.76 E-value=5.1e-19 Score=178.16 Aligned_cols=212 Identities=21% Similarity=0.229 Sum_probs=137.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++....|..+|+|++..... .....+..|+..++. +|+||+++ +|.+++.
T Consensus 13 G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~ 91 (288)
T 1ob3_A 13 GTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLD 91 (288)
T ss_dssp ETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHH
T ss_pred CCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHH
Confidence 468899999988899999999865432 223456667766442 68899885 8888876
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------F 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~ 533 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ .
T Consensus 92 ~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a 168 (288)
T 1ob3_A 92 VCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRA 168 (288)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCC
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccC
Confidence 65556899999999999999999999 568999999999999999999999999999865422110 0
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC--Cc---c--eeeeccccccccc-cc
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI--SV---M--EVVDVNLLSMEDK-YF 590 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~--~~---~--~~~d~~l~~~~~~-~~ 590 (639)
+. ...+.++||| | ||+.|..... ....+....+... +. .. . ..+++........ ..
T Consensus 169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (288)
T 1ob3_A 169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS-EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWE 247 (288)
T ss_dssp HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGG
T ss_pred chheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHH
Confidence 00 1123478999 7 8888875321 1111111111111 00 00 0 0111111100000 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.........+.+++.+|++.+|++|||+.|+++
T Consensus 248 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 248 SFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp GTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000112235678889999999999999999875
No 242
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.76 E-value=1.6e-18 Score=184.00 Aligned_cols=197 Identities=21% Similarity=0.252 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--------hhhhhHHHHHHHHH-------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--------RAFKSFDVACDMMK-------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~-------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+||||+++|+
T Consensus 146 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~lv~e~~~~g~ 225 (419)
T 3i6u_A 146 GACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGE 225 (419)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSEEEEEEECCTTCB
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCceEEEEEcCCCCc
Confidence 468999999864 578999999865421 11234666776644 27899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCC---
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~--- 532 (639)
|.+++... ..+++.....++.++++||+||| ..+|+||||||+||+++. +..+||+|||+|+........
T Consensus 226 L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~ 301 (419)
T 3i6u_A 226 LFDKVVGN-KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTL 301 (419)
T ss_dssp GGGGTSSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeecccceecCCCcccccc
Confidence 99988743 46899999999999999999999 567999999999999965 445999999999876543211
Q ss_pred -------ccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 533 -------FTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 533 -------~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
.+. ...+.++||| | ||+.|.... .....+.+.+...... ..+.
T Consensus 302 ~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~-~~~~~~~~~i~~~~~~-----~~~~-------- 367 (419)
T 3i6u_A 302 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH-RTQVSLKDQITSGKYN-----FIPE-------- 367 (419)
T ss_dssp ---CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC-SSSCCHHHHHHTTCCC-----CCHH--------
T ss_pred CCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC-cchHHHHHHHhcCCCC-----CCch--------
Confidence 011 0112367888 6 777776532 1222232222211100 0000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.|+++
T Consensus 368 --~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 368 --VWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp --HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred --hhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 01112345778899999999999999999986
No 243
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.76 E-value=7.8e-19 Score=187.29 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=133.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.- ..|..+|+|.+..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 22 G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i 101 (444)
T 3soa_A 22 GAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDI 101 (444)
T ss_dssp C--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHH
Confidence 56899999875 5688999999865432 223456677776542 689999999999888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCccc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSFTQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~~~----- 535 (639)
... ..+++.....++.+++.||+||| ..+|+||||||+||+++ .++.+||+|||+|+...........
T Consensus 102 ~~~-~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~ 177 (444)
T 3soa_A 102 VAR-EYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTP 177 (444)
T ss_dssp HHC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCG
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCc
Confidence 653 35899999999999999999999 56899999999999998 4578999999999876543221000
Q ss_pred ----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | +|+.|..+. ....+..-+..... +.-.+. ....
T Consensus 178 ~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~--~~~~~~~~i~~~~~----~~~~~~-----------~~~~ 240 (444)
T 3soa_A 178 GYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE--DQHRLYQQIKAGAY----DFPSPE-----------WDTV 240 (444)
T ss_dssp GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHTCC----CCCTTT-----------TTTS
T ss_pred ccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHhCCC----CCCccc-----------cccC
Confidence 0122367888 6 788776431 11111111111000 000000 0112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++..|++.+|++|||+.|+++
T Consensus 241 s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 241 TPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 234667888999999999999999986
No 244
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1e-17 Score=168.73 Aligned_cols=189 Identities=25% Similarity=0.305 Sum_probs=99.6
Q ss_pred CcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
+..+.+..+.+++..+ +..+++|+.|++++|.++.+ | .+..+++|+.|++++|.+.+.
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-------------------~-~~~~l~~L~~L~L~~n~l~~~ 83 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-------------------Q-GIQYLPNVTKLFLNGNKLTDI 83 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-------------------T-TGGGCTTCCEEECCSSCCCCC
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-------------------h-hHhcCCCCCEEEccCCccCCC
Confidence 4444555565554322 34555666666666655542 1 144455666666666666554
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCC
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 285 (639)
.+ +..+++|++|++++|.+++. +.+..+++|+.|++++|.
T Consensus 84 ~~--l~~l~~L~~L~l~~n~l~~~--------------------------------------~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 84 KP--LANLKNLGWLFLDENKVKDL--------------------------------------SSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCG--------------------------------------GGGTTCTTCCEEECTTSC
T ss_pred cc--cccCCCCCEEECCCCcCCCC--------------------------------------hhhccCCCCCEEECCCCc
Confidence 43 55666666666666655431 113344455555555555
Q ss_pred CCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh
Q 041082 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365 (639)
Q Consensus 286 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 365 (639)
+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++. | .
T Consensus 124 i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~ 195 (291)
T 1h6t_A 124 ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-A 195 (291)
T ss_dssp CCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-G
T ss_pred CCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-h
Confidence 5432 2344455555555555555543 345555555555555555554433 55555666666666655553 2 2
Q ss_pred hhcCCCCcEEEcccCCCCC
Q 041082 366 LWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 366 ~~~l~~L~~L~ls~N~l~~ 384 (639)
+..+++|+.|++++|++..
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 5555666666666665543
No 245
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.76 E-value=7.2e-19 Score=177.23 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=134.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 37 G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L 116 (290)
T 1t4h_A 37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL 116 (290)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBH
T ss_pred CCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCH
Confidence 568999999864 56789999886543 223345666666632 368899999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCC------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
.+++... ..+++..+..++.++++||+|||.. .++|+||||||+||+++ .++.+||+|||++.........
T Consensus 117 ~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~ 194 (290)
T 1t4h_A 117 KTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194 (290)
T ss_dssp HHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCc
Confidence 9988642 4588999999999999999999943 23499999999999998 7899999999999765433211
Q ss_pred ---ccc---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 ---FTQ---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 ---~~~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|.... .....+............++ ....
T Consensus 195 ~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~----~~~~~~~~~~~~~~~~~~~~--------------~~~~ 256 (290)
T 1t4h_A 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTSGVKPASFD--------------KVAI 256 (290)
T ss_dssp CCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHHHHTTTCCCGGGG--------------GCCC
T ss_pred CcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCc----CcHHHHHHHHhccCCccccC--------------CCCC
Confidence 000 0123367888 6 787776531 12222222211111000000 0112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++..|++.+|++|||+.||++
T Consensus 257 ~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 257 PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhhCCCHHHHhh
Confidence 34778889999999999999999985
No 246
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.75 E-value=7.6e-19 Score=178.94 Aligned_cols=208 Identities=20% Similarity=0.209 Sum_probs=135.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .|..+|+|++..... .....+..|+..++ .+|+||+++++|..++
T Consensus 14 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 93 (311)
T 4agu_A 14 GSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELD 93 (311)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH
T ss_pred cCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHH
Confidence 468899999875 488999998854432 22344556666643 2689999999988876
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 94 ~~-~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~ 169 (311)
T 4agu_A 94 RY-QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYR 169 (311)
T ss_dssp HT-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGC
T ss_pred hh-hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCcccc
Confidence 54 345899999999999999999999 568999999999999999999999999999876532211
Q ss_pred cc-----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC------------C---cceeeecccc
Q 041082 533 FT-----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI------------S---VMEVVDVNLL 583 (639)
Q Consensus 533 ~~-----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~------------~---~~~~~d~~l~ 583 (639)
.+ ....+.++||| | ||+.|..... .......+...... . ....-++.-.
T Consensus 170 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 4agu_A 170 SPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS--DVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDM 247 (311)
T ss_dssp CHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSC
T ss_pred ChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhcccccccccccccccccccCcCCCcccc
Confidence 00 01123478998 6 8888875321 11111111111100 0 0011111100
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... ...+.....+.+++..|++.+|++|||+.|+++
T Consensus 248 ~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 248 EPLE---LKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CCHH---HHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred chhh---hhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000 000122345778999999999999999999985
No 247
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.75 E-value=2.9e-19 Score=183.26 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=129.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+.... ...+..|+..++ .+|+||+++|+|.+++.
T Consensus 22 G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 98 (325)
T 3kn6_A 22 GSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIK 98 (325)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHH
Confidence 468999999875 57899999986432 234444554432 27899999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeeccccccccccccCCCccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
.. ..+++..+..|+.++++||+||| ..+|+||||||+||+++.++ .+||+|||+++...........
T Consensus 99 ~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~ 174 (325)
T 3kn6_A 99 KK-KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLH 174 (325)
T ss_dssp HC-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------------
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcC
Confidence 53 46899999999999999999999 66899999999999997655 8999999999865433211000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCC--ccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSG--EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~--~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | ||+.|....... .....+.......... . ++ .+....
T Consensus 175 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~-~~----------~~~~~~ 242 (325)
T 3kn6_A 175 YAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-S-FE----------GEAWKN 242 (325)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-C-CC----------SHHHHT
T ss_pred ccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-C-CC----------cccccC
Confidence 0112367888 6 788887542111 1111222211111110 0 00 001122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
....+.+++..|++.+|++|||+.|++
T Consensus 243 ~s~~~~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 243 VSQEAKDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp SCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred CCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence 234577888999999999999999887
No 248
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.75 E-value=4.7e-19 Score=177.44 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+++|.+..... .....+..|+..++ .+|+||+++|+|.+
T Consensus 17 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~ 96 (279)
T 2w5a_A 17 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLAS 96 (279)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHH
T ss_pred CCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHH
Confidence 468899999875 688999999875432 22345666666533 26899999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccC--CCCeEeecCCCCceeecCCcceeeccccccccccccCCC----
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGY--STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---- 532 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~--~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---- 532 (639)
++.. ....+++..+.+++.+++.||+|||... ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~ 176 (279)
T 2w5a_A 97 VITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTF 176 (279)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHH
T ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeecccccccccc
Confidence 8865 2345899999999999999999999543 234999999999999999999999999999876533210
Q ss_pred -------ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 -------FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 -------~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+. ...+.++||| | ||+.|.... ....+.+.+...... .+
T Consensus 177 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~i~~~~~~----~~-------------- 236 (279)
T 2w5a_A 177 VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKIREGKFR----RI-------------- 236 (279)
T ss_dssp HSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CC--------------
T ss_pred CCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc--CHHHHHHHHhhcccc----cC--------------
Confidence 000 1123368888 6 787776532 111122211111000 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+......+.+++.+|++.+|++||++.||++.+.
T Consensus 237 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 237 PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 0112235677889999999999999999997653
No 249
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.4e-18 Score=187.87 Aligned_cols=167 Identities=25% Similarity=0.371 Sum_probs=148.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..++.|+++++.+.. +| .|..+++|++|+|++|.+.+..| +..+++|+.|+|++|.+.+. | .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence 357789999999875 34 58999999999999999997655 99999999999999999863 3 7999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|.+++. ..+..+++|+.|+|++|.|+++ .+++|+.|+|++|++++..| +..+++|+.|+|++|.+.++ |
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~ 191 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R 191 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h
Confidence 99999864 4689999999999999999985 47899999999999998777 88999999999999999886 3
Q ss_pred cccCCCCCCCEEEccCCCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
.+..+++|+.|+|++|.+...+
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEECCC
T ss_pred -HHccCCCCCEEEccCCcCcCCc
Confidence 5899999999999999998754
No 250
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.75 E-value=8.8e-19 Score=181.93 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=135.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+...... ....+..|+.+++ .+|+||+++|+|
T Consensus 23 G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L 102 (361)
T 2yab_A 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGEL 102 (361)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred CcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcH
Confidence 468999999865 5889999998754322 1345677777743 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+++.........
T Consensus 103 ~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~ 178 (361)
T 2yab_A 103 FDFLAQ-KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNI 178 (361)
T ss_dssp HHHHTT-CSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccC
Confidence 999864 346899999999999999999999 56899999999999998776 79999999998765432110
Q ss_pred --cc----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --TQ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+. ...+.++|+| | +|+.|.... .-.+......... -.+++..
T Consensus 179 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-----~~~~~~~~i~~~~--~~~~~~~---------- 241 (361)
T 2yab_A 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITAVS--YDFDEEF---------- 241 (361)
T ss_dssp CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTC--CCCCHHH----------
T ss_pred CCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhcC--CCCCchh----------
Confidence 00 0112367888 6 777776431 1111111111100 0011110
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++..|+..+|++|||+.|+++
T Consensus 242 ~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 242 FSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0111234667888999999999999999984
No 251
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.75 E-value=6.1e-19 Score=181.29 Aligned_cols=191 Identities=21% Similarity=0.276 Sum_probs=131.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|++..... .....+..|+..++ .+|+||+ +|+|.++
T Consensus 20 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~ 98 (336)
T 3h4j_B 20 GSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDY 98 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHH
Confidence 46899999986 5688999999865432 22345667777644 2689999 6888887
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||++++++.+||+|||+++.........
T Consensus 99 l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~ 174 (336)
T 3h4j_B 99 IVEK-KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYA 174 (336)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTS
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcC
Confidence 7642 35899999999999999999999 5579999999999999999999999999998765432110
Q ss_pred -cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 -TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 -~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|.++..... ..+.+..... ..+.....
T Consensus 175 aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--------------~~~~i~~~~~-------~~p~~~s~ 233 (336)
T 3h4j_B 175 APEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--------------LFKKVNSCVY-------VMPDFLSP 233 (336)
T ss_dssp CGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT--------------CBCCCCSSCC-------CCCTTSCH
T ss_pred CHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH--------------HHHHHHcCCC-------CCcccCCH
Confidence 00 0012356777 5 6666664321100 0000000000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 234 ~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 234 GAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp HHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHcCCChhHCcCHHHHHh
Confidence 4667889999999999999999975
No 252
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.75 E-value=1.5e-18 Score=178.58 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=131.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|...++ .+|+||+++|+|..+
T Consensus 16 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~ 95 (337)
T 1o6l_A 16 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFH 95 (337)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHH
Confidence 468999999865 588999999875432 22344555665543 278999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 96 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y 171 (337)
T 1o6l_A 96 LSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEY 171 (337)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhh
Confidence 8642 35889999999999999999999 56899999999999999999999999999986432211100
Q ss_pred ---c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 ---Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 ---~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++|+| | ||+.|.... +..+......... . .. +.....
T Consensus 172 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~---~---~~----------p~~~s~ 230 (337)
T 1o6l_A 172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFELILMEE---I---RF----------PRTLSP 230 (337)
T ss_dssp CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCC---C---CC----------CTTSCH
T ss_pred CChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHHHHHHHHHcCC---C---CC----------CCCCCH
Confidence 0 0112367777 5 777776421 1111111111010 0 00 001122
Q ss_pred HHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.+.++..+|++.+|++|| ++.||++
T Consensus 231 ~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 456788899999999999 8888875
No 253
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.75 E-value=4.7e-19 Score=183.74 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=133.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-----hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-----AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... ++..+|+|++...... ....+..|+.+++ .+|+||+++|+|.
T Consensus 35 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~ 114 (351)
T 3c0i_A 35 GPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLC 114 (351)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHH
Confidence 468999999864 6899999998754321 2345677777644 3789999999998
Q ss_pred hcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCcc
Q 041082 461 KCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSFT 534 (639)
Q Consensus 461 ~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~~ 534 (639)
+.+.. ....+++.....++.+++.||+||| ..+|+||||||+||+++.+.. +|++|||+++..........
T Consensus 115 ~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~ 191 (351)
T 3c0i_A 115 FEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAG 191 (351)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCC
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeec
Confidence 87754 2335899999999999999999999 568999999999999987654 99999999987654322100
Q ss_pred c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 ~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. ...+.++||| | ||+.|.... ...+...+.. .. . ..++..
T Consensus 192 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~i~~---~~-~-~~~~~~-------- 255 (351)
T 3c0i_A 192 GRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLFEGIIK---GK-Y-KMNPRQ-------- 255 (351)
T ss_dssp CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHHHHHHH---TC-C-CCCHHH--------
T ss_pred CCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHc---CC-C-CCCccc--------
Confidence 0 0122367888 6 777776531 1111111110 00 0 001100
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++|||+.|+++
T Consensus 256 --~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 256 --WSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp --HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0112235677889999999999999999985
No 254
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=175.52 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=132.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..+|+|.+.... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 40 G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 117 (314)
T 3com_A 40 GSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRL 117 (314)
T ss_dssp ---CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHh
Confidence 468899999875 48899999986543 2345666666643 368999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
....+++..+..++.+++.||+||| ..+++||||||+||+++.++.+||+|||+++...........
T Consensus 118 ~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP 194 (314)
T 3com_A 118 RNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP 194 (314)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccCh
Confidence 4456899999999999999999999 568999999999999999999999999999766433211000
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|..+.. .......+.. .+. +... .+......+.
T Consensus 195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~-~~~-------~~~~--------~~~~~~~~l~ 256 (314)
T 3com_A 195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH--PMRAIFMIPT-NPP-------PTFR--------KPELWSDNFT 256 (314)
T ss_dssp HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHH-SCC-------CCCS--------SGGGSCHHHH
T ss_pred hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHhc-CCC-------cccC--------CcccCCHHHH
Confidence 0113367777 5 7777664311 0000000000 000 0000 0111223567
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||++.++++
T Consensus 257 ~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 257 DFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHccCChhhCcCHHHHHh
Confidence 7889999999999999999985
No 255
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.75 E-value=9.1e-19 Score=181.37 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=123.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+|+|++.... ..+.+..|+..++ .+|+||+++|+|.+++..
T Consensus 64 G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 141 (349)
T 2w4o_A 64 GATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVE 141 (349)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHh
Confidence 468999999876 46889999986543 2234555655543 278999999999998875
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----c----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----T---- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~---- 534 (639)
. ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+|||+++......... +
T Consensus 142 ~-~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~ 217 (349)
T 2w4o_A 142 K-GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYC 217 (349)
T ss_dssp C-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGS
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCcc
Confidence 3 45899999999999999999999 567999999999999975 8999999999998764332110 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|..+..... .+.. ...... .....+. ..+....
T Consensus 218 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~---~i~~~~-~~~~~~~-----------~~~~~~~ 281 (349)
T 2w4o_A 218 APEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-FMFR---RILNCE-YYFISPW-----------WDEVSLN 281 (349)
T ss_dssp CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-HHHH---HHHTTC-CCCCTTT-----------TTTSCHH
T ss_pred CHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-HHHH---HHHhCC-CccCCch-----------hhhCCHH
Confidence 01123378888 6 7887765321111 0111 111110 0000000 0112235
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|++.+|++|||+.|+++
T Consensus 282 ~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 282 AKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 677889999999999999999986
No 256
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.75 E-value=4.4e-19 Score=178.70 Aligned_cols=196 Identities=22% Similarity=0.250 Sum_probs=120.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh--hhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA--FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~--~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..+..+|+|++....... ...+..+....+ .+|+||++ |+|.+++
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l 96 (290)
T 3fme_A 18 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFY 96 (290)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHH
T ss_pred CCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHH
Confidence 46899999986 578999999986542211 111222222111 37899997 5887766
Q ss_pred cc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------
Q 041082 464 YS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 464 ~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
.. ....+++..+..|+.+++.||+|||.. .+|+||||||.||+++.++.+||+|||+++........
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~ 174 (290)
T 3fme_A 97 KQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKP 174 (290)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC---------------CCCCC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCcc
Confidence 53 345689999999999999999999942 27999999999999999999999999999866433211
Q ss_pred --ccc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 533 --FTQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 533 --~~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
.+. ...+.++||| | ||+.|..........+...+....+. .. .
T Consensus 175 y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---------~~---------~ 236 (290)
T 3fme_A 175 YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ---------LP---------A 236 (290)
T ss_dssp CSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC---------CC---------T
T ss_pred ccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC---------cc---------c
Confidence 000 0123367888 6 78877653111111111111111100 00 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++|||+.||++
T Consensus 237 ~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 237 DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 111234677889999999999999999986
No 257
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.75 E-value=8.4e-19 Score=175.47 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=135.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..+|+|.+..........+..|+..++. +|+||+++++|.+++..
T Consensus 20 G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 99 (277)
T 3f3z_A 20 GSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH 99 (277)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH
T ss_pred cCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHH
Confidence 4688999998754 67899999876655555677777777542 68999999999888764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCccc-------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
. ..+++..+.+|+.+++.||+||| ..+|+||||||+||++ +.++.+|++|||+++...........
T Consensus 100 ~-~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~ 175 (277)
T 3f3z_A 100 K-RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYV 175 (277)
T ss_dssp H-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCcc
Confidence 2 35899999999999999999999 5679999999999999 78899999999999876543221000
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|..... .......+...... . .. .........+
T Consensus 176 aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~----~-~~----------~~~~~~~~~~ 238 (277)
T 3f3z_A 176 SPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPT--DSEVMLKIREGTFT----F-PE----------KDWLNVSPQA 238 (277)
T ss_dssp CHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHCCCC----C-CH----------HHHTTSCHHH
T ss_pred ChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHhCCCC----C-Cc----------hhhhcCCHHH
Confidence 0123367777 5 7777764311 11111111100000 0 00 0000123456
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 239 ESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 77889999999999999999985
No 258
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.75 E-value=2.9e-18 Score=172.37 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=128.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+..... .....+..++..+. .+|+||+++|+|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (289)
T 1x8b_A 22 GEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADA 101 (289)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHH
T ss_pred CCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHH
Confidence 468899999875 689999999865322 22234444444322 268999999999999
Q ss_pred cccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------Ccceeeccc
Q 041082 463 LYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------NMVAHLSDF 520 (639)
Q Consensus 463 l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------~~~~~i~df 520 (639)
+... ...+++..+..|+.++++||+||| ..+|+||||||+||+++. ...+|++||
T Consensus 102 l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Df 178 (289)
T 1x8b_A 102 ISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDL 178 (289)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC--------------------CCCEEECCC
T ss_pred HHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEccc
Confidence 8652 245899999999999999999999 568999999999999984 447899999
Q ss_pred cccccccccCCCc-c-----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeee
Q 041082 521 GMAKLLLKEDQSF-T-----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579 (639)
Q Consensus 521 gla~~~~~~~~~~-~-----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d 579 (639)
|+++......... + ....+.++||| | +|+.+.. .+...........+
T Consensus 179 g~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~----~~~~~~~~~~~~~~-------- 246 (289)
T 1x8b_A 179 GHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR----NGDQWHEIRQGRLP-------- 246 (289)
T ss_dssp TTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS----SSHHHHHHHTTCCC--------
T ss_pred ccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc----chhHHHHHHcCCCC--------
Confidence 9998765433210 0 00122378888 6 5554432 11111111111110
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+. ......+.+++.+|++.+|++||++.|+++
T Consensus 247 -~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 247 -RIP----------QVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp -CCS----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -CCC----------cccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 000 011234677888999999999999999985
No 259
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.75 E-value=2.6e-18 Score=178.79 Aligned_cols=198 Identities=19% Similarity=0.193 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+|+|++..... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 31 G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 109 (361)
T 3uc3_A 31 GNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICN 109 (361)
T ss_dssp STTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHh
Confidence 568999999875 688999999865432 2244556666543 268999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--eeeccccccccccccCCC----cc-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKLLLKEDQS----FT----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~~~~~~~~----~~----- 534 (639)
. ..+++.....++.++++||+||| ..+|+||||||+||+++.++. +||+|||+|+........ .+
T Consensus 110 ~-~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a 185 (361)
T 3uc3_A 110 A-GRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIA 185 (361)
T ss_dssp H-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCC
Confidence 2 35899999999999999999999 667999999999999987765 999999999743322110 00
Q ss_pred -c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 -Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 -~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
. ...+.++||| | ||+.|....- ........+......... . .. .......
T Consensus 186 PE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-~~~~~~~~~~~~~~~~~~-~-~~------------~~~~s~~ 250 (361)
T 3uc3_A 186 PEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE-EPRDYRKTIQRILSVKYS-I-PD------------DIRISPE 250 (361)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHHTTCCC-C-CT------------TSCCCHH
T ss_pred hhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc-cHHHHHHHHHHHhcCCCC-C-CC------------cCCCCHH
Confidence 0 0111247888 6 7888775321 112222222221111100 0 00 0001124
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|++|||+.|+++.
T Consensus 251 ~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 251 CCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHccCChhHCcCHHHHHhC
Confidence 5678899999999999999999863
No 260
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.75 E-value=7.6e-19 Score=180.22 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+...... ....+..|+..++. +|+||+++|+|
T Consensus 22 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 101 (326)
T 2y0a_A 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101 (326)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCH
Confidence 468999999865 5889999998654321 23456677776442 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+++.........
T Consensus 102 ~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 177 (326)
T 2y0a_A 102 FDFLAE-KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNI 177 (326)
T ss_dssp HHHHTT-SSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCC
T ss_pred HHHHHh-cCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccc
Confidence 999864 346899999999999999999999 66899999999999999877 79999999998765322110
Q ss_pred --c------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ . ...+.++||| | ||+.|.... .-.+......... .+ +.+..
T Consensus 178 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~-~~-~~~~~---------- 240 (326)
T 2y0a_A 178 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANVSAVN-YE-FEDEY---------- 240 (326)
T ss_dssp CSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHHTC-CC-CCHHH----------
T ss_pred cCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHHhcC-CC-cCccc----------
Confidence 0 0 1122367888 6 777776421 1111111100000 00 00000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++|||+.|+++
T Consensus 241 ~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 241 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0112234667888999999999999999986
No 261
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=173.86 Aligned_cols=212 Identities=21% Similarity=0.215 Sum_probs=132.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-----hhhhHHHHHHHHH----------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-----AFKSFDVACDMMK----------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~----------------------------~Lv~e 452 (639)
.++|.||++.. ..+..+|+|++...... ....+..|+..++ .+|+|
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e 99 (308)
T 3g33_A 20 GAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFE 99 (308)
T ss_dssp SSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEE
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEeh
Confidence 56899999985 56889999998643211 1123333333311 36788
Q ss_pred cCCCCCchhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC
Q 041082 453 YMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 453 y~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~ 531 (639)
|+. |+|.+++.... ..+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.......
T Consensus 100 ~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~ 175 (308)
T 3g33_A 100 HVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA 175 (308)
T ss_dssp CCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC
T ss_pred hhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc
Confidence 887 59988887533 34899999999999999999999 56799999999999999999999999999987653322
Q ss_pred Ccc--------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-C-CC-cceee--ecccc
Q 041082 532 SFT--------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-P-IS-VMEVV--DVNLL 583 (639)
Q Consensus 532 ~~~--------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~-~~-~~~~~--d~~l~ 583 (639)
... ....+.++||| | ||+.|..... ....+...+...- + .. ..+.+ .....
T Consensus 176 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 254 (308)
T 3g33_A 176 LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS-EADQLGKIFDLIGLPPEDDWPRDVSLPRGAF 254 (308)
T ss_dssp SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS-HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGS
T ss_pred cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCChhhccchhhcccccc
Confidence 100 01123478999 7 8888875321 1111111111111 1 11 10000 00000
Q ss_pred cccccc--ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKY--FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~--~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... ....++....+.+++.+|++.+|++|||+.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 255 PPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 000000 0000112345678889999999999999999985
No 262
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.75 E-value=1.6e-18 Score=176.98 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=94.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|||++..........+..|+..++ .+|+||+++|+|.+++.
T Consensus 24 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 103 (316)
T 2ac3_A 24 GAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIH 103 (316)
T ss_dssp CSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH
T ss_pred CceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHh
Confidence 46889999985 468899999987654444456666666543 26899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeecccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~ 527 (639)
.. ..+++.....++.++++||+||| ..+|+||||||+||+++.++. +||+|||+++...
T Consensus 104 ~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 104 KR-RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK 165 (316)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred cc-CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence 53 35889999999999999999999 568999999999999998766 9999999987653
No 263
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=9.6e-18 Score=174.49 Aligned_cols=157 Identities=23% Similarity=0.230 Sum_probs=124.8
Q ss_pred ccEEEeecCccccccchhhc-CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECC
Q 041082 252 LEVFSMFNCNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330 (639)
Q Consensus 252 l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 330 (639)
++.|++++|++++..+..+. .+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34455555555544455555 77888889999998887777788888899999999999888777788888999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh---hcCCCCcEEEcccCCCCCCCccccccccc--cccccccCCC
Q 041082 331 GNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL---WNLKDILYLNLSSNFFISPLPLEIGNLKV--LVGIDLSMNN 405 (639)
Q Consensus 331 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~p~~~~~l~~--L~~l~ls~N~ 405 (639)
+|.+++..|..|..+++|+.|+|++|+++.+.+..| ..+++|+.|+|++|.+.+..+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999988888889999999999999999988766666 56888999999999988766677777776 4788999998
Q ss_pred CCC
Q 041082 406 FSG 408 (639)
Q Consensus 406 l~g 408 (639)
+..
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 864
No 264
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.75 E-value=1.3e-18 Score=181.30 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=132.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--------hhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--------AFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--------~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||++... +|..||||++...... ....+..|...++ .+||||+++
T Consensus 105 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g 184 (365)
T 2y7j_A 105 GVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184 (365)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTT
T ss_pred CCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCC
Confidence 458899999875 6899999998654311 1234445554432 268999999
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
|+|.+++.. ...+++..+..++.++++||+||| ..+|+||||||.||+++.++.+|++|||++..+.......
T Consensus 185 ~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~ 260 (365)
T 2y7j_A 185 GELFDYLTE-KVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELC 260 (365)
T ss_dssp CBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCC
T ss_pred CcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCC
Confidence 999998864 235899999999999999999999 5689999999999999999999999999998765432110
Q ss_pred -c------c----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 534 -T------Q----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 534 -~------~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
+ . ...+.++||| | ||+.|.... ........+..... ....+.
T Consensus 261 gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~----~~~~~~------ 328 (365)
T 2y7j_A 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR--RQILMLRMIMEGQY----QFSSPE------ 328 (365)
T ss_dssp SCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----CCCHHH------
T ss_pred CCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhCCC----CCCCcc------
Confidence 0 0 0122356777 5 666665421 11111111110000 000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 329 -----~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 329 -----WDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp -----HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0112235778889999999999999999986
No 265
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=180.35 Aligned_cols=187 Identities=22% Similarity=0.230 Sum_probs=126.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+||||+++|+|..
T Consensus 34 G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 113 (353)
T 3txo_A 34 GSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMF 113 (353)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999865 578999999875421 22233444444432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 114 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~ 189 (353)
T 3txo_A 114 HIQKS-RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPD 189 (353)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGG
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcC
Confidence 88653 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | ||+.|.... +-.+......... ..-| ....
T Consensus 190 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~---~~~p-------------~~~~ 248 (353)
T 3txo_A 190 YIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-----NEDDLFEAILNDE---VVYP-------------TWLH 248 (353)
T ss_dssp GCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCC---CCCC-------------TTSC
T ss_pred eEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCC---CCCC-------------CCCC
Confidence 0112367888 6 788887531 1111111111110 0000 0111
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.++..+|++.+|++||++
T Consensus 249 ~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 249 EDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHHHHHHHHHTCSSGGGSTTS
T ss_pred HHHHHHHHHHhhhCHHHccCC
Confidence 235678889999999999998
No 266
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=159.15 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=99.8
Q ss_pred EEEeecCccccccc-hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCC
Q 041082 254 VFSMFNCNISGGIL-EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332 (639)
Q Consensus 254 ~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 332 (639)
.|++++|.+++..+ ..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 33444444433322 23567778888888888888776777888888888888888888777777888888888888888
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCC
Q 041082 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL 386 (639)
Q Consensus 333 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 386 (639)
.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++....
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 888777888888888888888888888877888888888888888888776543
No 267
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.74 E-value=5.7e-19 Score=180.50 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=128.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.... .+++|.+..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 44 G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~ 121 (319)
T 2y4i_B 44 GRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVR 121 (319)
T ss_dssp SSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTT
T ss_pred CCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHH
Confidence 4688999998754 588998764321 11223334443322 37899999999999998
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------ 532 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------ 532 (639)
.....+++..+..++.++++||+||| ..+|+||||||+||+++ ++.+|++|||+++........
T Consensus 122 ~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~ 197 (319)
T 2y4i_B 122 DAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGW 197 (319)
T ss_dssp SSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGG
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCc
Confidence 76567899999999999999999999 56899999999999998 679999999998764321100
Q ss_pred ----ccc-------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 533 ----FTQ-------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 533 ----~~~-------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ..+......... .+....
T Consensus 198 ~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~~-----~~~~~~-- 265 (319)
T 2y4i_B 198 LCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP-----AEAIIWQMGTGM-----KPNLSQ-- 265 (319)
T ss_dssp GGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC-----HHHHHHHHHTTC-----CCCCCC--
T ss_pred ccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHhccCC-----CCCCCc--
Confidence 000 0013357777 5 7777764311 111111111110 010000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+...+.+++..|++.+|++||++.+|+++|+.+....
T Consensus 266 -------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 266 -------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp -------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred -------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 001123667889999999999999999999999887653
No 268
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.74 E-value=1.6e-18 Score=180.30 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=134.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|.+..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 40 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l 119 (362)
T 2bdw_A 40 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 119 (362)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHH
Confidence 468999999864 578999999865432 233456667766442 689999999999888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC---cceeeccccccccccccCCCc----c--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN---MVAHLSDFGMAKLLLKEDQSF----T-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~---~~~~i~dfgla~~~~~~~~~~----~-- 534 (639)
... ..+++.....++.++++||+||| ..+|+||||||+||+++.+ +.+||+|||+++......... +
T Consensus 120 ~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~ 195 (362)
T 2bdw_A 120 VAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPG 195 (362)
T ss_dssp TTC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTT
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCcc
Confidence 643 45899999999999999999999 5689999999999999865 459999999998765432110 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | ||+.|..+. ....+...+...... .-.+ ......
T Consensus 196 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~--~~~~~~~~i~~~~~~----~~~~-----------~~~~~~ 258 (362)
T 2bdw_A 196 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--DQHRLYAQIKAGAYD----YPSP-----------EWDTVT 258 (362)
T ss_dssp TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CCTT-----------GGGGSC
T ss_pred ccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhCCCC----CCcc-----------cccCCC
Confidence 00123368888 6 888876531 111122212111100 0000 001122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.+++.+|++.+|++||++.|+++.
T Consensus 259 ~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 259 PEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 346778889999999999999998853
No 269
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.74 E-value=9.3e-19 Score=181.78 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=130.6
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhhh----hhhhhHHHHHHHHH---------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQYE----RAFKSFDVACDMMK---------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~~----~~~~~f~~e~~~~~---------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|++..... .....+..|+..++ .+||||+++|
T Consensus 65 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~ 144 (355)
T 1vzo_A 65 GAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGG 144 (355)
T ss_dssp TTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSC
T ss_pred CCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCC
Confidence 46899999987 3678999999864321 11222333333321 2789999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
+|.+++... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 145 ~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~ 220 (355)
T 1vzo_A 145 ELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 220 (355)
T ss_dssp BHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGG
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCc
Confidence 999988743 35889999999999999999999 5679999999999999999999999999998654321110
Q ss_pred --------cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 --------TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 --------~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
+. ...+.++||| | ||+.|..... .......+........ +.
T Consensus 221 ~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~------~~--------- 284 (355)
T 1vzo_A 221 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG-EKNSQAEISRRILKSE------PP--------- 284 (355)
T ss_dssp GSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT-SCCCHHHHHHHHHHCC------CC---------
T ss_pred ccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC-ccchHHHHHHHHhccC------CC---------
Confidence 00 0112357777 5 7777764321 1112222222111000 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRI-----NAKESVTR 624 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP-----~m~~v~~~ 624 (639)
.+.+....+.+++.+|++.+|++|| ++.|+++.
T Consensus 285 -~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 285 -YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp -CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred -CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 0111223466788999999999999 89998864
No 270
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1e-20 Score=207.65 Aligned_cols=217 Identities=19% Similarity=0.156 Sum_probs=146.2
Q ss_pred cCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEE-ccc
Q 041082 121 GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILE-LQK 199 (639)
Q Consensus 121 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~-L~~ 199 (639)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|..- ..+.. .+..+++.+.+|..+..+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l----~~l~~-ll~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL----LTIIL-LMRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH----HHHHH-HHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh----hhHHH-HHHhcccccCCHHHHHHHHhcccCcchhh
Confidence 45667777777777775 56777777777777777554310 00000 0112233445566666666666666 444
Q ss_pred CCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEE
Q 041082 200 NSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279 (639)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L 279 (639)
|.+. .|+.+.+++|.++..++ ..++.|++++|.+++ +|. ++.+++|+.|
T Consensus 420 n~~~-----------~L~~l~l~~n~i~~l~~------------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 420 AYLD-----------DLRSKFLLENSVLKMEY------------------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHH------------------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred cccc-----------hhhhhhhhcccccccCc------------------cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 4321 11122222222222110 012333333333333 343 6778899999
Q ss_pred ECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccC-CccccCCCCCCEEeCCCCcC
Q 041082 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI-PTCFGNQTSLRILSLDSNKL 358 (639)
Q Consensus 280 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l 358 (639)
+|++|.|+ .+|..++.+++|+.|++++|++++ +| .++.+++|+.|+|++|.+++.. |..|+.+++|+.|++++|.+
T Consensus 469 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 99999999 789999999999999999999997 56 8999999999999999999887 99999999999999999999
Q ss_pred cccchh---hhhcCCCCcEEEc
Q 041082 359 ISIIPS---TLWNLKDILYLNL 377 (639)
Q Consensus 359 ~~~~p~---~~~~l~~L~~L~l 377 (639)
++.+|. .+..+++|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 987663 3445889998874
No 271
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.74 E-value=3.8e-19 Score=182.33 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=131.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh-hhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA-FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~-~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++....... ...+..|+..++ .+||||++ |+|.+++.
T Consensus 13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 91 (324)
T 3mtl_A 13 GTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLD 91 (324)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHH
Confidence 568999999875 67899999986543221 112223444422 37899998 58888887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
.....+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.........
T Consensus 92 ~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a 168 (324)
T 3mtl_A 92 DCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRP 168 (324)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCC
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccC
Confidence 65567899999999999999999999 5689999999999999999999999999998654322110
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC----cceeeecccc---cccccc---
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLL---SMEDKY--- 589 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~---~~~~~~--- 589 (639)
+. ...+.++||| | ||+.|.... ........+....... ..+..+..-. ......
T Consensus 169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
T 3mtl_A 169 PDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEA 246 (324)
T ss_dssp HHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCC
T ss_pred hhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchh
Confidence 00 1123478998 6 888887532 1111222222111110 1111100000 000000
Q ss_pred -ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 -FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 -~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.+++.+|++.+|++|||+.||++
T Consensus 247 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 247 LLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 0000112245678899999999999999999985
No 272
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.74 E-value=2e-18 Score=177.42 Aligned_cols=207 Identities=16% Similarity=0.232 Sum_probs=133.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|.+.... .+.+..|+.+++ .+|+||+++++|.++
T Consensus 47 G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~ 123 (330)
T 3nsz_A 47 GKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQL 123 (330)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHH
T ss_pred cCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHH
Confidence 46899999975 568999999986432 244555555532 268899999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc----c---
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF----T--- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~----~--- 534 (639)
+. .+++..+..++.++++||+||| ..+|+||||||+||+++.++ .+||+|||+|+......... +
T Consensus 124 ~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y 196 (330)
T 3nsz_A 124 YQ----TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYF 196 (330)
T ss_dssp GG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGG
T ss_pred HH----hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccc
Confidence 74 3788999999999999999999 66799999999999999776 89999999998765432210 0
Q ss_pred ---c-----cccccccccc--c-------CCCCCCCccCCCccch------------HHHHHhhCCCC---cceeeeccc
Q 041082 535 ---Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTL------------KSWVNDLLPIS---VMEVVDVNL 582 (639)
Q Consensus 535 ---~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l------------~~~~~~~~~~~---~~~~~d~~l 582 (639)
. ...+.++||| | ||+.|..........+ .+|+....... ..+.+....
T Consensus 197 ~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (330)
T 3nsz_A 197 KGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHS 276 (330)
T ss_dssp CCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCC
T ss_pred cChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhcc
Confidence 0 1123478999 6 8888874322111111 11211110000 000000000
Q ss_pred cccccc--cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 583 LSMEDK--YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 583 ~~~~~~--~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... ...........+.+++.+|++.+|++|||+.|+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 277 RKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 000000 00001112345778899999999999999999986
No 273
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.74 E-value=1.3e-18 Score=179.53 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .|..+|+|++..... .....+..|...+. .+|+||+++|+|.+
T Consensus 28 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 107 (345)
T 1xjd_A 28 GSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMY 107 (345)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 578999999875431 12233444444322 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 108 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~ 183 (345)
T 1xjd_A 108 HIQSC-HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPD 183 (345)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGG
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | ||+.|.... ....+..-+.. .. +.. +....
T Consensus 184 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~--~~~~~~~~i~~---~~------~~~----------p~~~s 242 (345)
T 1xjd_A 184 YIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ--DEEELFHSIRM---DN------PFY----------PRWLE 242 (345)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHH---CC------CCC----------CTTSC
T ss_pred cCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHh---CC------CCC----------CcccC
Confidence 0113367888 6 787776531 11111111111 00 000 00112
Q ss_pred HHHHHHHhhccCCCCCCCCCHH-HHH
Q 041082 598 SFVFNLAMECTAESPKQRINAK-ESV 622 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~-~v~ 622 (639)
..+.+++.+|++.+|++||++. ||.
T Consensus 243 ~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 243 KEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 2466788899999999999997 554
No 274
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.74 E-value=7.7e-19 Score=188.32 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=125.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..|..+|+|++..... .....+..|...++ .+||||+++|+|.++
T Consensus 159 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~ 238 (446)
T 4ejn_A 159 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH 238 (446)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHH
T ss_pred CcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHH
Confidence 46899999885 4688999999875422 12233344444421 378999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+... ..+++..+..++.++++||+|||. ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 239 l~~~-~~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y 315 (446)
T 4ejn_A 239 LSRE-RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEY 315 (446)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccc
Confidence 8643 358999999999999999999994 167999999999999999999999999999864332211000
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... ...+.......... .. +.....
T Consensus 316 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~~~ 374 (446)
T 4ejn_A 316 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEI------RF----------PRTLGP 374 (446)
T ss_dssp CCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTSCH
T ss_pred cCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CccCCH
Confidence 0112367777 5 777776421 11111111110100 00 011123
Q ss_pred HHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.+.+++.+|++.+|++|| ++.|+++
T Consensus 375 ~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 375 EAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 466788899999999999 9999875
No 275
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.74 E-value=2e-18 Score=176.37 Aligned_cols=211 Identities=22% Similarity=0.273 Sum_probs=133.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .|..+|+|.+...... ....+..|+..++ .+|+||++ |+|.+++.
T Consensus 16 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~ 94 (317)
T 2pmi_A 16 GTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMD 94 (317)
T ss_dssp ---CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHH
Confidence 468899999864 5789999998654322 2345666776643 26899998 68988775
Q ss_pred cC-----CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 465 SS-----NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 465 ~~-----~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t 171 (317)
T 2pmi_A 95 SRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVT 171 (317)
T ss_dssp HHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSC
T ss_pred hccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCccc
Confidence 41 235899999999999999999999 568999999999999999999999999999876432111
Q ss_pred ----ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--C-CCcc-e-----eeecccccc
Q 041082 533 ----FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--P-ISVM-E-----VVDVNLLSM 585 (639)
Q Consensus 533 ----~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~-~~~~-~-----~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|.... ........+.... + .... . ..++.+...
T Consensus 172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (317)
T 2pmi_A 172 LWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT--NDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQR 249 (317)
T ss_dssp CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCC
T ss_pred ccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccc
Confidence 000 1123478999 7 888887532 1111111111111 0 0000 0 001111000
Q ss_pred ccc------cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDK------YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... ...........+.++..+|++.+|++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 250 PPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp CCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 000 00000011235778999999999999999999975
No 276
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.6e-17 Score=160.00 Aligned_cols=132 Identities=25% Similarity=0.328 Sum_probs=64.0
Q ss_pred CCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCC
Q 041082 275 NLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLD 354 (639)
Q Consensus 275 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 354 (639)
+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|+|++|.++...+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444444433444444444444444444444444444444455555555555444444444444555555555
Q ss_pred CCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 355 SNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 355 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
+|++.+..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|+|
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555544444444455555555555554444444444455555555555544
No 277
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.74 E-value=3.6e-18 Score=181.47 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=98.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 85 G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~ 164 (437)
T 4aw2_A 85 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTL 164 (437)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHH
Confidence 4689999999764 78999999865322 12234666666543 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||+||| ..+|+||||||+|||+|.++.+||+|||+|+....
T Consensus 165 l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~ 227 (437)
T 4aw2_A 165 LSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME 227 (437)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhccc
Confidence 9764556899999999999999999999 66899999999999999999999999999976643
No 278
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.74 E-value=7.3e-19 Score=181.52 Aligned_cols=196 Identities=23% Similarity=0.270 Sum_probs=130.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-hhhhHHHHHHH-HH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-AFKSFDVACDM-MK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-~~~~f~~e~~~-~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..|..+|||++...... ....+..+... ++ .+|+||+++ +|.+++
T Consensus 62 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l 140 (340)
T 3an0_A 62 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFY 140 (340)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEECCCSE-EHHHHH
T ss_pred cCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEHHHhhC-cHHHHH
Confidence 46889999986 57899999998654321 12233333322 11 278999975 888877
Q ss_pred cc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC---------
Q 041082 464 YS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ--------- 531 (639)
Q Consensus 464 ~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~--------- 531 (639)
.. ....+++..+..|+.++++||+|||.. .+|+||||||.||+++.++.+||+|||+++.......
T Consensus 141 ~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~ 218 (340)
T 3an0_A 141 KQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKP 218 (340)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTCEEECCCSHHHHHSCHHHHHHSSCCCC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeCCCceecccccccccCCCCcc
Confidence 53 345789999999999999999999942 3799999999999999999999999999986543210
Q ss_pred -Cccc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 532 -SFTQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 532 -~~~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
..+. ...+.++||| | ||+.|..........+...+.... +... .
T Consensus 219 y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~---------~~~~---------~ 280 (340)
T 3an0_A 219 YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS---------PQLP---------A 280 (340)
T ss_dssp CCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC---------CCCC---------G
T ss_pred ccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCC---------CCCC---------c
Confidence 0000 0123478888 6 788777531111111111111100 0000 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+...+.+++.+|++.+|++||++.||++
T Consensus 281 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 281 DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp GGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 112235778889999999999999999986
No 279
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.74 E-value=6.8e-19 Score=181.23 Aligned_cols=195 Identities=22% Similarity=0.247 Sum_probs=130.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--------hhhhhHHHHHHHHH--------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--------RAFKSFDVACDMMK--------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~--------------------~Lv~ey~~~g 457 (639)
.++|.||++.. .++..+|+|.+..... .....+..|+..++ .+|+||+..|
T Consensus 35 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g 114 (335)
T 3dls_A 35 GAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSG 114 (335)
T ss_dssp SSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTS
T ss_pred cCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCC
Confidence 46899999985 5688999999875431 12234455665543 2689999877
Q ss_pred -CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-
Q 041082 458 -SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ- 535 (639)
Q Consensus 458 -sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~- 535 (639)
+|.+++... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 115 ~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~ 190 (335)
T 3dls_A 115 LDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFC 190 (335)
T ss_dssp CBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEEC
T ss_pred ccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccC
Confidence 998888643 35899999999999999999999 568999999999999999999999999999876543321000
Q ss_pred --------------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCC-cceeeeccccccccccccchHHHHHHH
Q 041082 536 --------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 --------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| +-|..+.+.+....|.. ..+.+....... ......+
T Consensus 191 gt~~y~aPE~~~~~~~~~~~~Diw-----------slG~il~el~~g~~pf~~~~~~~~~~~~~~--------~~~~~~l 251 (335)
T 3dls_A 191 GTIEYCAPEVLMGNPYRGPELEMW-----------SLGVTLYTLVFEENPFCELEETVEAAIHPP--------YLVSKEL 251 (335)
T ss_dssp SCGGGCCHHHHTTCCBCSHHHHHH-----------HHHHHHHHHHHSSCSCSSGGGGTTTCCCCS--------SCCCHHH
T ss_pred CCccccChhhhcCCCCCCCcccch-----------hHHHHHHHHHhCCCchhhHHHHHhhccCCC--------cccCHHH
Confidence 0012245555 33333333332222221 111111111100 0112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++..|++.+|++|||+.|+++.
T Consensus 252 ~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 252 MSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HHHHHHHccCChhhCcCHHHHhcC
Confidence 778889999999999999999874
No 280
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=176.30 Aligned_cols=118 Identities=24% Similarity=0.357 Sum_probs=97.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+.+++ .+|+||+++|+|..+
T Consensus 26 G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~ 105 (384)
T 4fr4_A 26 GSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYH 105 (384)
T ss_dssp CTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHH
Confidence 568999999865 578899999865432 22345556666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+.. ...+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+|+.+..
T Consensus 106 l~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 106 LQQ-NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 875 345899999999999999999999 66899999999999999999999999999987654
No 281
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.73 E-value=9.7e-19 Score=179.57 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=131.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+...... ....+..|+..++ .+|+||+++|+|.++
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 119 (327)
T 3lm5_A 40 GKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSL 119 (327)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGG
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHH
Confidence 468899999865 5899999998654322 2345555555532 268999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----c
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----T 534 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~ 534 (639)
+... ...+++..+..++.+++.||+||| ..+|+||||||.||+++. ++.+||+|||+++......... +
T Consensus 120 ~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt 196 (327)
T 3lm5_A 120 CLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGT 196 (327)
T ss_dssp GSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCC
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCC
Confidence 8653 356899999999999999999999 568999999999999998 7899999999998765432110 0
Q ss_pred ----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.+.||| | ||+.|.... .......-+...... ..+ +....
T Consensus 197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~-----~~~----------~~~~~ 259 (327)
T 3lm5_A 197 PEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE--DNQETYLNISQVNVD-----YSE----------ETFSS 259 (327)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC-----CCT----------TTTTT
T ss_pred cCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CchHHHHHHHhcccc-----cCc----------hhhcc
Confidence 01122367777 5 777776421 111110001100000 000 00112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...+.+++..|++.+|++|||+.|+++
T Consensus 260 ~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 260 VSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 2334677889999999999999999975
No 282
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.73 E-value=1.2e-18 Score=177.31 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=134.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+...... ....+..|+..++ .+|+||+++++|.++
T Consensus 45 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 124 (309)
T 2h34_A 45 GGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAM 124 (309)
T ss_dssp CSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHH
T ss_pred CCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHH
Confidence 468899999865 6789999998654322 2345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 125 l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 200 (309)
T 2h34_A 125 LRRQ-GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLY 200 (309)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcC
Confidence 8642 35899999999999999999999 568999999999999999999999999998766433211
Q ss_pred --ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 --FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 --~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|..... ...+...+....+. +. .......
T Consensus 201 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~-------~~---------~~~~~~~ 262 (309)
T 2h34_A 201 YMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ--LSVMGAHINQAIPR-------PS---------TVRPGIP 262 (309)
T ss_dssp GCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH--HHHHHHHHHSCCCC-------GG---------GTSTTCC
T ss_pred ccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch--HHHHHHHhccCCCC-------cc---------ccCCCCC
Confidence 000 1112367777 5 7777764210 00111111110000 00 0011122
Q ss_pred HHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhHH
Q 041082 598 SFVFNLAMECTAESPKQRI-NAKESVTRLLKIRD 630 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP-~m~~v~~~l~~~~~ 630 (639)
..+.+++.+|++.+|++|| ++.++++.|+.+..
T Consensus 263 ~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 263 VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 3466788899999999999 99999999998754
No 283
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.73 E-value=1.6e-18 Score=182.91 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=129.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH-------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM-------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++... .+..+|+|++... ..+..|+..+ ..+||||+++|+|.
T Consensus 73 G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~ 147 (400)
T 1nxk_A 73 GINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELF 147 (400)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHH
Confidence 468999999864 5789999998632 1223333321 13689999999999
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc---
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+++... ...+++..+..|+.++++||+||| ..+|+||||||.||+++. ++.+||+|||+++.........
T Consensus 148 ~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~ 224 (400)
T 1nxk_A 148 SRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC 224 (400)
T ss_dssp HHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCC
Confidence 999763 346899999999999999999999 568999999999999997 7899999999998764322110
Q ss_pred -------cc----cccccccccc--c-------CCCCCCCccCCCcc--chHHHHHhhCCCCcceeeecccccccccccc
Q 041082 534 -------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEM--TLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 534 -------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~--~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
+. ...+.++||| | ||+.|......... .+...+.... .+.-.+
T Consensus 225 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~----~~~~~~----------- 289 (400)
T 1nxk_A 225 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ----YEFPNP----------- 289 (400)
T ss_dssp --CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC----CCCCTT-----------
T ss_pred CCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc----ccCCCc-----------
Confidence 00 1122367888 6 78777654221110 1111111100 000000
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
........+.+++.+|++.+|++|||+.||++.
T Consensus 290 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 290 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 001122356778899999999999999999863
No 284
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.73 E-value=2.8e-18 Score=171.47 Aligned_cols=193 Identities=22% Similarity=0.264 Sum_probs=133.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +|..+++|.+..... .....+..|+..++ .+|+||+++++|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (276)
T 2h6d_A 22 GTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDY 101 (276)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHH
T ss_pred CCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHH
Confidence 467899999875 688999999865432 22345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 102 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~ 177 (276)
T 2h6d_A 102 ICKH-GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 177 (276)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------C
T ss_pred Hhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCcccc
Confidence 8643 35889999999999999999999 557999999999999999999999999999876543211
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
.+. ...+.++||| | ||+.|.... ....+.+.+...... + + .....
T Consensus 178 aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~-----~-~-------------~~~~~ 236 (276)
T 2h6d_A 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE--HVPTLFKKIRGGVFY-----I-P-------------EYLNR 236 (276)
T ss_dssp CTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHCCCC-----C-C-------------TTSCH
T ss_pred CHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHhhcCccc-----C-c-------------hhcCH
Confidence 000 0113468888 6 777776531 111111111110000 0 0 01123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||++.||++.
T Consensus 237 ~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 237 SVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhC
Confidence 46678899999999999999999873
No 285
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.73 E-value=3.2e-18 Score=172.82 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++++|.++
T Consensus 26 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 105 (294)
T 2rku_A 26 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLEL 105 (294)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred cCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHH
Confidence 468899999875 468899998865431 22345666666643 278999999999987
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++..........
T Consensus 106 ~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y 181 (294)
T 2rku_A 106 HKR-RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNY 181 (294)
T ss_dssp HHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSS
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCc
Confidence 754 235899999999999999999999 56899999999999999999999999999987643221100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ...+.......... .+ +.....
T Consensus 182 ~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~------~~----------~~~~~~ 240 (294)
T 2rku_A 182 IAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNEY------SI----------PKHINP 240 (294)
T ss_dssp CCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCC------CC----------CTTSCH
T ss_pred CCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhhccC------CC----------ccccCH
Confidence 01123367888 6 777776531 11111111111100 00 001112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||++.|+++.
T Consensus 241 ~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 241 VAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred HHHHHHHHHcccChhhCcCHHHHhhC
Confidence 46678889999999999999999863
No 286
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.73 E-value=1.3e-17 Score=174.99 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=105.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..||||++..... ....+..|+..++ .+||||++ |+|
T Consensus 65 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L 142 (382)
T 2vx3_A 65 GSFGQVVKAYDRVEQEWVAIKIIKNKKA-FLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNL 142 (382)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEECSSHH-HHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBH
T ss_pred cCCEEEEEEEEcCCCcEEEEEEEeccHH-HHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCH
Confidence 468999999864 578999999864321 1233333333311 26899996 599
Q ss_pred hhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeeccccccccccccCCC--cc
Q 041082 460 EKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAKLLLKEDQS--FT 534 (639)
Q Consensus 460 ~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla~~~~~~~~~--~~ 534 (639)
.+++.... ..+++..+..++.+++.||+|||.. ..+|+||||||+||+++ +++.+||+|||+|+........ .+
T Consensus 143 ~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t 221 (382)
T 2vx3_A 143 YDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQS 221 (382)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSC
T ss_pred HHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCC
Confidence 98887533 4589999999999999999999942 46799999999999994 5788999999999876543221 00
Q ss_pred ----------ccccccccccc--c-------CCCCCCCc
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 222 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 222 RFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred ccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 01123479999 7 89988763
No 287
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.73 E-value=3.1e-18 Score=176.46 Aligned_cols=200 Identities=18% Similarity=0.208 Sum_probs=126.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------HhhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------KKLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++.... .....+....... ..+|+||+++|+|.+++.
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~ 118 (336)
T 3fhr_A 40 GVNGKVLECFHRRTGQKCALKLLYDSP-KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQ 118 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEESSH-HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEecCcH-HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHH
Confidence 468999999875 68999999986432 1222222222221 137899999999999987
Q ss_pred cCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc-------
Q 041082 465 SSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 465 ~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
... ..+++..+..++.++++||+||| ..+|+||||||.||+++. ++.+||+|||+++.........
T Consensus 119 ~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y 195 (336)
T 3fhr_A 119 ERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYY 195 (336)
T ss_dssp TC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCc
Confidence 633 46999999999999999999999 568999999999999976 4559999999998664332110
Q ss_pred --cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|........ ................-. ........
T Consensus 196 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 262 (336)
T 3fhr_A 196 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA--ISPGMKRRIRLGQYGFPN-----------PEWSEVSE 262 (336)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCT-----------TTSTTCCH
T ss_pred cChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh--hhhhHHHhhhccccccCc-----------hhhccCCH
Confidence 00 0112367888 6 8888865321111 000000000000000000 00112233
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++..|++.+|++|||+.|+++
T Consensus 263 ~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 263 DAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHCCCChhHCcCHHHHhc
Confidence 5677889999999999999999986
No 288
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.73 E-value=1.3e-18 Score=176.49 Aligned_cols=202 Identities=23% Similarity=0.297 Sum_probs=124.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 26 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 105 (303)
T 2vwi_A 26 GATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIK 105 (303)
T ss_dssp --CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHH
T ss_pred ccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHH
Confidence 46789999975 4678999998865432 22334445554422 37899999999999885
Q ss_pred c-------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 465 S-------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 465 ~-------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~ 182 (303)
T 2vwi_A 106 HIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182 (303)
T ss_dssp HHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC----------
T ss_pred HHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhh
Confidence 3 2345899999999999999999999 568999999999999999999999999999765432100
Q ss_pred -----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc-ceeeeccccccc
Q 041082 533 -----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDVNLLSME 586 (639)
Q Consensus 533 -----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ............+... ....++....
T Consensus 183 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (303)
T 2vwi_A 183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP--PMKVLMLTLQNDPPSLETGVQDKEMLK-- 258 (303)
T ss_dssp -----CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC--GGGHHHHHHTSSCCCTTC-----CCCC--
T ss_pred hcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc--hhhHHHHHhccCCCccccccccchhhh--
Confidence 000 1123478888 6 8888875421 1111111111111111 1111111111
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....+.+++.+|++.+|++||++.|+++
T Consensus 259 --------~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 259 --------KYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp --------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred --------hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 11234677888999999999999999986
No 289
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.73 E-value=3e-18 Score=177.32 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=126.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... +..+|+|++..... .....+..|...+. .+|+||+++|+|.+
T Consensus 31 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 110 (353)
T 2i0e_A 31 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 110 (353)
T ss_dssp ETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHH
Confidence 4689999998754 78999999875432 22234445554432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++...........
T Consensus 111 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~ 186 (353)
T 2i0e_A 111 HIQQV-GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPD 186 (353)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGG
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCcc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | +|+.|.... +-.+.......... .. +....
T Consensus 187 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~s 245 (353)
T 2i0e_A 187 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHNV------AY----------PKSMS 245 (353)
T ss_dssp GCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTSC
T ss_pred ccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CCCCC
Confidence 0112367888 6 787776531 11111111111100 00 00112
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.+++.+|++.+|++||++
T Consensus 246 ~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 246 KEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHHHHHHTCSCTTSCTTC
T ss_pred HHHHHHHHHHhhcCHHHcCCC
Confidence 346678889999999999964
No 290
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.73 E-value=2.5e-18 Score=171.79 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=121.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|++.... ......+..|+..++ .+|+||+ +|++.+.
T Consensus 24 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~ 102 (275)
T 2eue_A 24 GSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDY 102 (275)
T ss_dssp -----EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEEECC-CEEHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEehhc-CCcHHHH
Confidence 46889999975 468899999986532 222345666666643 2688998 5677777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+... ..+++..+.+++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++.........
T Consensus 103 ~~~~-~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~ 178 (275)
T 2eue_A 103 IVQR-DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYA 178 (275)
T ss_dssp HHTS-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC---------------CTTC
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCcccccCCCCCcCcC
Confidence 6543 45899999999999999999999 5679999999999999999999999999998665432110
Q ss_pred -cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 -TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 -~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|.... ............. .. + +.....
T Consensus 179 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~-~~-~--------------~~~~~~ 237 (275)
T 2eue_A 179 APEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFKNISNGV-YT-L--------------PKFLSP 237 (275)
T ss_dssp CHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTC-CC-C--------------CTTSCH
T ss_pred CceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC-CC-C--------------CccCCH
Confidence 00 0113467888 6 777776531 1111111110000 00 0 011123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 238 ~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 238 GAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 4667889999999999999999975
No 291
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.73 E-value=3.1e-18 Score=176.72 Aligned_cols=195 Identities=20% Similarity=0.247 Sum_probs=130.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+....... ..|++.+. .+|+||+++|+|.+++.
T Consensus 33 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~ 108 (342)
T 2qr7_A 33 GSYSVCKRCIHKATNMEFAVKIIDKSKRDP----TEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKIL 108 (342)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEETTTCCC----HHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEcccCCh----HHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHH
Confidence 468899999865 57899999987543322 22333321 37899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC----cceeeccccccccccccCCCcccc----
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKLLLKEDQSFTQN---- 536 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~~~~~~~~~~~~---- 536 (639)
.. ..+++.....++.+++.||+||| ..+|+||||||+||++.++ +.+||+|||+++............
T Consensus 109 ~~-~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~ 184 (342)
T 2qr7_A 109 RQ-KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTA 184 (342)
T ss_dssp TC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCS
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCc
Confidence 43 45899999999999999999999 5689999999999998433 359999999998765432110000
Q ss_pred -----------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 537 -----------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 537 -----------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
..+.++||| | ||+.|..... .....+.......... . +.... ....
T Consensus 185 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~-~-~~~~~----------~~~~ 250 (342)
T 2qr7_A 185 NFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP--DDTPEEILARIGSGKF-S-LSGGY----------WNSV 250 (342)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST--TSCHHHHHHHHHHCCC-C-CCSTT----------TTTS
T ss_pred cccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC--cCCHHHHHHHHccCCc-c-cCccc----------cccC
Confidence 012378999 7 8888876321 1122222211111100 0 00000 0111
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.++...|++.+|++||++.||++
T Consensus 251 s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 251 SDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 234667888999999999999999885
No 292
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=178.81 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=98.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++.... ......+..|..++. ++||||+++|+|.++
T Consensus 72 G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~ 151 (412)
T 2vd5_A 72 GAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTL 151 (412)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHH
Confidence 468999999874 68999999986432 122344566665532 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||+||| ..+|+||||||+|||+|.++.+||+|||+++....
T Consensus 152 l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~ 214 (412)
T 2vd5_A 152 LSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA 214 (412)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheeccC
Confidence 9764456899999999999999999999 66899999999999999999999999999987654
No 293
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.73 E-value=3.1e-18 Score=178.24 Aligned_cols=143 Identities=25% Similarity=0.273 Sum_probs=105.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|++.... .....+..|...++ .+|+||+ +|+|.
T Consensus 46 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~ 123 (360)
T 3llt_A 46 GTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLY 123 (360)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHH
T ss_pred cCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHH
Confidence 46899999987 467899999986422 12233444444422 2688999 88999
Q ss_pred hccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------------Ccc
Q 041082 461 KCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------------NMV 514 (639)
Q Consensus 461 ~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------------~~~ 514 (639)
+++.... ..+++.....++.+++.||+||| ..+|+||||||+||+++. ++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (360)
T 3llt_A 124 EIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTG 200 (360)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCC
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCC
Confidence 9887533 35899999999999999999999 668999999999999975 789
Q ss_pred eeeccccccccccccCCCc--c----------ccccccccccc--c-------CCCCCCCc
Q 041082 515 AHLSDFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 515 ~~i~dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
+||+|||+|+......... + ....+.++||| | ||+.|...
T Consensus 201 ~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 201 IKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp EEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred EEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 9999999998654332110 0 01123478999 6 88888753
No 294
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.73 E-value=8.1e-18 Score=176.40 Aligned_cols=116 Identities=26% Similarity=0.336 Sum_probs=93.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..++. .+|+||+++|+|..
T Consensus 63 G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~ 142 (396)
T 4dc2_A 63 GSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMF 142 (396)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHH
Confidence 568999999875 578999999875432 12233444544432 27899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+|+..
T Consensus 143 ~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~ 203 (396)
T 4dc2_A 143 HMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 203 (396)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeec
Confidence 88643 35899999999999999999999 568999999999999999999999999999863
No 295
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.73 E-value=5.9e-18 Score=175.15 Aligned_cols=212 Identities=23% Similarity=0.250 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-----hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-----AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... +|..+|+|.+...... ....+..|+..++ .+|+||+++ +|.
T Consensus 21 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~ 99 (346)
T 1ua2_A 21 GQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLE 99 (346)
T ss_dssp ETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHH
T ss_pred cCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHH
Confidence 468899999875 5889999998754321 1234556666643 268899985 788
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
..+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~ 176 (346)
T 1ua2_A 100 VIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTR 176 (346)
T ss_dssp HHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCC
T ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccc
Confidence 877765556888899999999999999999 5679999999999999999999999999998764322110
Q ss_pred ----cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCC--Cccee---eecccccccccc
Q 041082 534 ----TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPI--SVMEV---VDVNLLSMEDKY 589 (639)
Q Consensus 534 ----~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~---~d~~l~~~~~~~ 589 (639)
+. ...+.++||| | +|+.|..... ....+....... .+. ...+. .+..........
T Consensus 177 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (346)
T 1ua2_A 177 WYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS-DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI 255 (346)
T ss_dssp TTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCC
T ss_pred cccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCC
Confidence 00 1123367888 6 7777654311 111111111111 111 00000 000000000000
Q ss_pred c--cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 F--TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~--~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .........+.+++.+|++.+|++|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 256 PLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp CHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 000112346788999999999999999999986
No 296
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.73 E-value=2.5e-18 Score=175.94 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=135.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... +|..+|+|.+...... ....+..|+..++. +|+||+++|+|
T Consensus 23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 102 (321)
T 2a2a_A 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGEL 102 (321)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred cCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcH
Confidence 468899999865 5789999998654321 23456677766432 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++ .+|++|||+++.........
T Consensus 103 ~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 178 (321)
T 2a2a_A 103 FDFLAQ-KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNI 178 (321)
T ss_dssp HHHHHT-CSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccccccc
Confidence 999874 345899999999999999999999 56899999999999999887 79999999998765432110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... .-.+......... ..+++...
T Consensus 179 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~--~~~~~~~~--------- 242 (321)
T 2a2a_A 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITSVS--YDFDEEFF--------- 242 (321)
T ss_dssp CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTC--CCCCHHHH---------
T ss_pred CCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhcc--cccChhhh---------
Confidence 0 01123367888 6 777776421 1111111111100 00111110
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++|||+.|+++
T Consensus 243 -~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 243 -SHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -TTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -cccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 111234677889999999999999999986
No 297
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.73 E-value=6.8e-18 Score=189.39 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=128.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++... .+..+|||++.... ......+..|..++. ++||||+++|+|.+
T Consensus 352 G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~ 431 (674)
T 3pfq_A 352 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 431 (674)
T ss_dssp TTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHH
Confidence 468999999865 57889999987542 122334444544422 37899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++..+..++.+|+.||+||| ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 432 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~ 507 (674)
T 3pfq_A 432 HIQQV-GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPD 507 (674)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSS
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCc
Confidence 98753 35899999999999999999999 668999999999999999999999999999864322211000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.+.|+| | ||+.|.... +-.+......... +. .+....
T Consensus 508 Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-----~~~~~~~~i~~~~--------~~--------~p~~~s 566 (674)
T 3pfq_A 508 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHN--------VA--------YPKSMS 566 (674)
T ss_dssp SCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHSSC--------CC--------CCTTSC
T ss_pred ccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCC--------CC--------CCccCC
Confidence 0112367787 6 777776531 1112221111111 00 001112
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.+++..|++.+|++||++
T Consensus 567 ~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 567 KEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHHHHHHHHSCSSSTTCTTC
T ss_pred HHHHHHHHHHccCCHHHCCCC
Confidence 346678889999999999998
No 298
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.73 E-value=7.3e-18 Score=183.67 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=134.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 195 G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~ 274 (576)
T 2acx_A 195 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFH 274 (576)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHH
Confidence 468999999874 689999999865432 22334556666643 278999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----cc--
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQ-- 535 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~-- 535 (639)
+... ...+++..+..++.+|+.||+||| ..+|+||||||+||+++.++.+||+|||+|+......... +.
T Consensus 275 l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y 351 (576)
T 2acx_A 275 IYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGY 351 (576)
T ss_dssp HHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGG
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccc
Confidence 8753 335899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHh--hCCCCcceeeeccccccccccccchHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND--LLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++|+| | ||+.|....... ....+.... ..+... . ...
T Consensus 352 ~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~-~~~~~i~~~i~~~~~~~----p--------------~~~ 412 (576)
T 2acx_A 352 MAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK-IKREEVERLVKEVPEEY----S--------------ERF 412 (576)
T ss_dssp CCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC-CCHHHHHHHHHHCCCCC----C--------------TTS
T ss_pred cCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc-hhHHHHHHHhhcccccC----C--------------ccC
Confidence 0112367888 6 888887542111 111111111 011100 0 011
Q ss_pred HHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
...+.+++.+|++.+|++|| ++.||.+
T Consensus 413 s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 413 SPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 23466788899999999999 6777764
No 299
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.72 E-value=3.6e-18 Score=177.81 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+||||+++|+|.+++.
T Consensus 44 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 123 (360)
T 3eqc_A 44 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 123 (360)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHH
Confidence 468999999875 678999999865422 22345666666543 27899999999999986
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---c------c-
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---F------T- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~------~- 534 (639)
.. ..+++..+.+++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........ . +
T Consensus 124 ~~-~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE 200 (360)
T 3eqc_A 124 KA-GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 200 (360)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHH
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHH
Confidence 53 3588999999999999999999942 26999999999999999999999999999755322111 0 0
Q ss_pred ---ccccccccccc--c-------CCCCCCCc
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 201 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 232 (360)
T 3eqc_A 201 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 232 (360)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred HHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 01123478999 6 89888753
No 300
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.72 E-value=8.6e-19 Score=185.80 Aligned_cols=190 Identities=16% Similarity=0.057 Sum_probs=122.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHHhhh--------h-----------------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMKKLV--------L----------------------- 451 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~~Lv--------~----------------------- 451 (639)
.+||.||++.. ..|..+|||++...... ..+.+..|...++.+- +
T Consensus 89 G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (413)
T 3dzo_A 89 EDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 168 (413)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC-------
T ss_pred CCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccc
Confidence 46899999994 56899999998733221 1344555554433220 0
Q ss_pred ---------------hcCCCCCchhccc------cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec
Q 041082 452 ---------------EYMPHGSLEKCLY------SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510 (639)
Q Consensus 452 ---------------ey~~~gsL~~~l~------~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~ 510 (639)
..+..|+|.+++. .....++|..+..|+.++++||+||| ..+|+||||||+|||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrDiKp~NILl~ 245 (413)
T 3dzo_A 169 RLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLD 245 (413)
T ss_dssp --------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred cCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcccceEEEe
Confidence 0123456666652 22345788999999999999999999 66899999999999999
Q ss_pred CCcceeeccccccccccccCCC-------ccc--------------cccccccccc--c-------CCCCCCCccCCCcc
Q 041082 511 NNMVAHLSDFGMAKLLLKEDQS-------FTQ--------------NTNTCHHRIY--G-------TRRNPQMNFFSGEM 560 (639)
Q Consensus 511 ~~~~~~i~dfgla~~~~~~~~~-------~~~--------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~ 560 (639)
.++.+||+|||+++........ .+. ...+.++||| | ||+.|....-
T Consensus 246 ~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~---- 321 (413)
T 3dzo_A 246 QRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA---- 321 (413)
T ss_dssp TTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTG----
T ss_pred cCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcc----
Confidence 9999999999998865433111 000 0012266777 5 6666654211
Q ss_pred chHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 561 TLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.++..+... ......+.+++.+|++.+|++||++.|+++.
T Consensus 322 -------------~~~~~~~~~~~~--------~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 322 -------------ALGGSEWIFRSC--------KNIPQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp -------------GGSCSGGGGSSC--------CCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred -------------hhhhHHHHHhhc--------ccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 011111111110 0112347778889999999999999998753
No 301
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.72 E-value=3.8e-18 Score=175.12 Aligned_cols=192 Identities=22% Similarity=0.299 Sum_probs=122.5
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhh----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQY----ERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+.+++ .+|+||+++|+
T Consensus 28 G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~ 107 (327)
T 3a62_A 28 GGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGE 107 (327)
T ss_dssp ETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEE
T ss_pred CCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCc
Confidence 46899999886 468899999986432 122334555665543 37899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----- 533 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----- 533 (639)
|.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 108 L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g 183 (327)
T 3a62_A 108 LFMQLERE-GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCG 183 (327)
T ss_dssp HHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSS
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCC
Confidence 99988642 35788889999999999999999 5689999999999999999999999999997643221100
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+ ....+.++||| | ||+.|.... ...+.+........ .+ +.
T Consensus 184 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~------~~----------p~ 242 (327)
T 3a62_A 184 TIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-----NRKKTIDKILKCKL------NL----------PP 242 (327)
T ss_dssp CCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTCC------CC----------CT
T ss_pred CcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CC
Confidence 0 01122367787 5 777776431 11111111110000 00 01
Q ss_pred HHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.....+.+++.+|++.+|++|| ++.|+++
T Consensus 243 ~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 243 YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 1123466788899999999999 6667654
No 302
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.72 E-value=4.1e-18 Score=175.49 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++++|.++
T Consensus 52 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 131 (335)
T 2owb_A 52 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLEL 131 (335)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHH
Confidence 468899999875 46889999986543 123345666666643 268999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+.. ...+++..+..++.++++||+||| ..+|+|||||++||+++.++.+||+|||+++...........
T Consensus 132 ~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y 207 (335)
T 2owb_A 132 HKR-RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNY 207 (335)
T ss_dssp HHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSS
T ss_pred Hhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccc
Confidence 754 245899999999999999999999 568999999999999999999999999999876432211000
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... ...+......... ..+ +.....
T Consensus 208 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~------~~~----------~~~~~~ 266 (335)
T 2owb_A 208 IAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNE------YSI----------PKHINP 266 (335)
T ss_dssp CCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTC------CCC----------CTTSCH
T ss_pred cCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHhcCC------CCC----------CccCCH
Confidence 1123367888 6 777776431 1111111100000 000 001112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++||++.|+++
T Consensus 267 ~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 267 VAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHHHccCChhHCcCHHHHhc
Confidence 4567888999999999999999986
No 303
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.72 E-value=4.2e-18 Score=173.61 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=127.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++...++..+|+|.+.... ......+..|+..++. +|+| +.+|+|.++
T Consensus 39 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~ 117 (313)
T 3cek_A 39 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 117 (313)
T ss_dssp CSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHH
T ss_pred CCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHH
Confidence 46889999998889999999986543 2233456666655332 4567 456788888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||++++ +.+||+|||+++........
T Consensus 118 l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~ 192 (313)
T 3cek_A 118 LKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTV 192 (313)
T ss_dssp HHHC-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCC
Confidence 8643 36889999999999999999999 568999999999999964 88999999999876432210
Q ss_pred ---ccc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 533 ---FTQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 533 ---~~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|....... ...+.... ++.....
T Consensus 193 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~----~~~~~~~~--------~~~~~~~ 260 (313)
T 3cek_A 193 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ----ISKLHAII--------DPNHEIE 260 (313)
T ss_dssp GGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH----HHHHHHHH--------CTTSCCC
T ss_pred CcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH----HHHHHHHH--------hcccccC
Confidence 000 0122367887 6 777776532111 11111111 1110000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +..+...+.+++.+|++.+|++||++.|+++.
T Consensus 261 ~------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 261 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 0 00112346678889999999999999999863
No 304
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.72 E-value=4.4e-18 Score=172.12 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=132.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---------hhhhhHHHHHHHHH---------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---------RAFKSFDVACDMMK---------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---------~~~~~f~~e~~~~~---------------------~Lv~ey~~ 455 (639)
.++|.||++... .|..+|+|.++.... .....+..|+..++ .+|+||++
T Consensus 28 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~ 107 (298)
T 1phk_A 28 GVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMK 107 (298)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred CCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccC
Confidence 457899999875 578999999865431 11234455555532 26899999
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
+|+|.+++... ..+++..+..++.+++.||+||| ..+++||||||+||+++.++.+||+|||+++.........
T Consensus 108 ~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~ 183 (298)
T 1phk_A 108 KGELFDYLTEK-VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 183 (298)
T ss_dssp TCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCC
T ss_pred CCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccc
Confidence 99999988642 35899999999999999999999 6689999999999999999999999999998764332110
Q ss_pred --------cc----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 534 --------TQ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 --------~~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
+. ...+.++||| | ||+.|.... ....+...+..... ....+
T Consensus 184 ~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~----~~~~~------ 251 (298)
T 1phk_A 184 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR--KQMLMLRMIMSGNY----QFGSP------ 251 (298)
T ss_dssp CSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----CCCTT------
T ss_pred cCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc--cHHHHHHHHhcCCc----ccCcc------
Confidence 00 0112367777 5 777766421 11111111111000 00000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.|+++
T Consensus 252 -----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 252 -----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp -----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred -----cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 01122345778889999999999999999985
No 305
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.72 E-value=2.8e-18 Score=171.87 Aligned_cols=193 Identities=22% Similarity=0.274 Sum_probs=130.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~ 99 (279)
T 3fdn_A 20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRE 99 (279)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHH
Confidence 468899999765 467899999864332 22345666666643 368999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T----- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~----- 534 (639)
+... ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.++|+|||++.......... +
T Consensus 100 l~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~a 175 (279)
T 3fdn_A 100 LQKL-SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 175 (279)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCC
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccC
Confidence 8642 35889999999999999999999 6789999999999999999999999999986554322110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | +|+.|.... ...+........ ... .+......+
T Consensus 176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~------~~~----------~~~~~~~~~ 234 (279)
T 3fdn_A 176 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----TYQETYKRISRV------EFT----------FPDFVTEGA 234 (279)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHT------CCC----------CCTTSCHHH
T ss_pred HhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----cHHHHHHHHHhC------CCC----------CCCcCCHHH
Confidence 01112367777 5 676665421 111111100000 000 001112345
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++.+|++.+|++||++.||++.
T Consensus 235 ~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 235 RDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred HHHHHHHhccChhhCCCHHHHhhC
Confidence 678899999999999999999874
No 306
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.72 E-value=2e-18 Score=177.48 Aligned_cols=211 Identities=21% Similarity=0.197 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .|..+|+|++...... ....+..|+..++ .+|+||++++++..+.
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 115 (331)
T 4aaa_A 36 GSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLE 115 (331)
T ss_dssp GTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH
T ss_pred cCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHH
Confidence 468999999875 4789999988543321 2334556666643 2689999998888765
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 116 ~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~ 191 (331)
T 4aaa_A 116 LF-PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYR 191 (331)
T ss_dssp HS-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTC
T ss_pred hh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCcccc
Confidence 43 335899999999999999999999 568999999999999999999999999999765432111
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC-----------CC-cceeeeccccccc
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP-----------IS-VMEVVDVNLLSME 586 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~-----------~~-~~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ....+...+..... .. ......+.+....
T Consensus 192 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 4aaa_A 192 APELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS-DIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKERE 270 (331)
T ss_dssp CHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCC
T ss_pred CcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccc
Confidence 000 1123478998 6 8888865321 11111111110000 00 0001111111000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .....+.....+.+++.+|++.+|++|||+.|+++
T Consensus 271 ~-~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 271 P-LERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp C-HHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred h-hhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0 00001123456788999999999999999999986
No 307
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.72 E-value=5.6e-18 Score=170.21 Aligned_cols=192 Identities=14% Similarity=0.011 Sum_probs=132.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|...++ .+||||+++++|.++
T Consensus 42 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~ 121 (286)
T 3uqc_A 42 VPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEV 121 (286)
T ss_dssp STTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHH
T ss_pred cCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHH
Confidence 568899999875 489999999875532 22345666665533 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHH 542 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~~ 542 (639)
+... ....+..+|+.+++.||+||| ..+|+||||||.||+++.++.+||+++|... ..+.++
T Consensus 122 l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~------------~~~~~~ 183 (286)
T 3uqc_A 122 ADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMP------------DANPQD 183 (286)
T ss_dssp HTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCT------------TCCHHH
T ss_pred HhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccC------------CCCchh
Confidence 8542 345567889999999999999 5689999999999999999999999776543 123478
Q ss_pred ccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCC
Q 041082 543 RIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPK 613 (639)
Q Consensus 543 dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~ 613 (639)
||| | ||+.|....-.... +. ........+...+. .........+.+++.+|++.+|+
T Consensus 184 Di~slG~il~elltg~~Pf~~~~~~~~-~~----~~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~~l~~dP~ 249 (286)
T 3uqc_A 184 DIRGIGASLYALLVNRWPLPEAGVRSG-LA----PAERDTAGQPIEPA---------DIDRDIPFQISAVAARSVQGDGG 249 (286)
T ss_dssp HHHHHHHHHHHHHHSEECSCCCSBCCC-SE----ECCBCTTSCBCCHH---------HHCTTSCHHHHHHHHHHHCTTSS
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCcchh-hH----HHHHHhccCCCChh---------hcccCCCHHHHHHHHHHcccCCc
Confidence 999 6 78877653211100 00 00000000000000 00012234577888999999999
Q ss_pred CCCCHHHHHHHHHHhHHH
Q 041082 614 QRINAKESVTRLLKIRDL 631 (639)
Q Consensus 614 ~RP~m~~v~~~l~~~~~~ 631 (639)
+| |+.|+++.|+++...
T Consensus 250 ~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 250 IR-SASTLLNLMQQATAV 266 (286)
T ss_dssp CC-CHHHHHHHHHHHHC-
T ss_pred cC-CHHHHHHHHHHHhcc
Confidence 99 999999999987643
No 308
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.8e-17 Score=155.52 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=105.6
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..|..|+.+++|++|+|+
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4667777777776 445 5777777777777777654 33467777777777777777777667777777777777777
Q ss_pred cccCccccCccccCCCCCCEEecCCCC-CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNN-LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
+|++++..|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|.+.+.. .+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-------------------~~-~l~~l~~L~~L~l~~n~i~~~~--~l~ 178 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-------------------IM-PLKTLPELKSLNIQFDGVHDYR--GIE 178 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-------------------CG-GGGGCSSCCEEECTTBCCCCCT--TGG
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-------------------cH-hhcCCCCCCEEECCCCCCcChH--Hhc
Confidence 777777666677777767666666665 443 33 4667788888888888887643 577
Q ss_pred CCCCCCEEEccCCCCCC
Q 041082 212 NLINLKRLNLYDNYLTS 228 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~ 228 (639)
.+++|++|++++|++.+
T Consensus 179 ~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEEECBC----
T ss_pred cCCCCCEEEeeCcccCC
Confidence 88888888888888754
No 309
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.72 E-value=7.8e-18 Score=172.39 Aligned_cols=197 Identities=22% Similarity=0.244 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--------hhhhhHHHHHHHHH-------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--------RAFKSFDVACDMMK-------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~-------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|||.+..... .....+..|+..++ .+|+||+++|+
T Consensus 21 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~ 100 (322)
T 2ycf_A 21 GACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGE 100 (322)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEE
T ss_pred CCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEEecCCCCc
Confidence 468999999864 578999999864321 11234666666643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCC----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQ---- 531 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~---- 531 (639)
|.+++.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++. +||+|||+++.......
T Consensus 101 L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 176 (322)
T 2ycf_A 101 LFDKVVG-NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTL 176 (322)
T ss_dssp THHHHST-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHH
T ss_pred HHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccc
Confidence 9988864 346899999999999999999999 568999999999999987654 99999999987643211
Q ss_pred ------Cccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 532 ------SFTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 532 ------~~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
..+. ...+.++||| | ||+.|..... ....+...+...... ..+..
T Consensus 177 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~-----~~~~~------- 243 (322)
T 2ycf_A 177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR-TQVSLKDQITSGKYN-----FIPEV------- 243 (322)
T ss_dssp HSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTT-CSSCHHHHHHHTCCC-----CCHHH-------
T ss_pred cCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhCccc-----cCchh-------
Confidence 0010 1123367888 6 7777765321 122233322211100 00000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 244 ---~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 244 ---WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp ---HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1112345778899999999999999999985
No 310
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.72 E-value=5e-19 Score=180.39 Aligned_cols=196 Identities=20% Similarity=0.296 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHH------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMK------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .++..+|+|++...... ....+..|+..++ .+|+||+++|+
T Consensus 23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~ 102 (311)
T 3ork_A 23 GGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVT 102 (311)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEE
T ss_pred CCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCC
Confidence 46899999985 57899999998754322 2334555554411 58999999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---- 534 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---- 534 (639)
|.+++... ..+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.+........
T Consensus 103 L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 178 (311)
T 3ork_A 103 LRDIVHTE-GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAA 178 (311)
T ss_dssp HHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---------------
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccc
Confidence 99998643 35899999999999999999999 56799999999999999999999999999987643321100
Q ss_pred --------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 535 --------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 535 --------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
....+.++||| | ||+.|.... .-.+......... ...+..
T Consensus 179 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~---~~~~~~--------- 241 (311)
T 3ork_A 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-----SPVSVAYQHVRED---PIPPSA--------- 241 (311)
T ss_dssp ---CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHCC---CCCHHH---------
T ss_pred cCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhcCC---CCCccc---------
Confidence 00112367887 6 777776421 1111111111110 000000
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.+++.
T Consensus 242 ~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 242 RHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 00112345677889999999999998777664
No 311
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-17 Score=164.92 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
++.++++++.+++.. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|++.+..| +..+++|++|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344566666666433 4667778888888888777 355 67777888888888888776544 77788888888888
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
|++++. |. +.. ++|+.|+|++|.++++ .+++|+.|+|++|++++. | .+..+++|+.|++++|.+.+. ..
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 887753 32 222 6777777777777654 255666666666666543 2 455666666666666666655 44
Q ss_pred cCCCCCCCEEEccCCCCCCC
Q 041082 210 FGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+..+++|+.|++++|.++..
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 66666666666666666543
No 312
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.72 E-value=9.9e-18 Score=172.62 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=134.2
Q ss_pred CCcCcceEEEe--cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI--QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l--~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .++..+|+|++.... .....+..|+..++ .+|+||+ +++
T Consensus 25 G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~ 102 (339)
T 1z57_A 25 GAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLS 102 (339)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCB
T ss_pred CCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCC
Confidence 46889999975 367899999986432 22234444444422 2678999 789
Q ss_pred chhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------Ccceeec
Q 041082 459 LEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------NMVAHLS 518 (639)
Q Consensus 459 L~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------~~~~~i~ 518 (639)
|.+++.... ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+
T Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 179 (339)
T 1z57_A 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVV 179 (339)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEEC
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEe
Confidence 998886533 46889999999999999999999 568999999999999987 6679999
Q ss_pred cccccccccccCCC--cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCc
Q 041082 519 DFGMAKLLLKEDQS--FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISV 574 (639)
Q Consensus 519 dfgla~~~~~~~~~--~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~ 574 (639)
|||+++........ .+ ....+.++||| | ||+.|.... ........+.... +...
T Consensus 180 Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~p~~~ 257 (339)
T 1z57_A 180 DFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH--DSKEHLAMMERILGPLPKHM 257 (339)
T ss_dssp CCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS--CHHHHHHHHHHHHCSCCHHH
T ss_pred eCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCCHHH
Confidence 99999875433211 00 01123478999 6 888887532 1111111111111 0000
Q ss_pred ------ceeeec-cccc---------------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 575 ------MEVVDV-NLLS---------------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 575 ------~~~~d~-~l~~---------------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...++. .... ...........+...+.+++.+|++.+|++|||+.||++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 258 IQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000000 0000 000000112344567889999999999999999999975
No 313
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.72 E-value=2.9e-17 Score=170.27 Aligned_cols=211 Identities=23% Similarity=0.294 Sum_probs=134.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~~ 455 (639)
.++|.||++.. ..|..+|+|++...... ....+..|+..++ .+|+||++
T Consensus 28 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 107 (351)
T 3mi9_A 28 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 107 (351)
T ss_dssp CSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS
T ss_pred CCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC
Confidence 56899999987 46889999988544321 2234455655532 26889987
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+ ++.+.+......+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+.+......
T Consensus 108 ~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 183 (351)
T 3mi9_A 108 H-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPN 183 (351)
T ss_dssp E-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCC
T ss_pred C-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhccccccccccccc
Confidence 4 777776655556899999999999999999999 568999999999999999999999999999876422110
Q ss_pred ------------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCcceeee-ccc
Q 041082 533 ------------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISVMEVVD-VNL 582 (639)
Q Consensus 533 ------------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~~~~~d-~~l 582 (639)
.+. ...+.++||| | ||+.|.... ........+.... +......++ ...
T Consensus 184 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 261 (351)
T 3mi9_A 184 RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN--TEQHQLALISQLCGSITPEVWPNVDNYEL 261 (351)
T ss_dssp CCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCGG
T ss_pred ccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhhccccccchh
Confidence 000 1123478888 6 888776532 1111111111111 111000000 000
Q ss_pred cccc---cccccchHHH------HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 583 LSME---DKYFTTKKQC------LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 583 ~~~~---~~~~~~~~~~------~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... ........+. -..+.+++.+|++.+|++|||+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 262 YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp GTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 0000 0000011111 134778999999999999999999986
No 314
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.71 E-value=2.8e-18 Score=177.51 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=133.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+|+||+++|+|.++
T Consensus 52 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~ 131 (350)
T 1rdq_E 52 GSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSH 131 (350)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence 468999999865 689999999865432 22345555666543 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T------ 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~------ 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 132 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aP 207 (350)
T 1rdq_E 132 LRRI-GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAP 207 (350)
T ss_dssp HHHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCH
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCH
Confidence 8753 35889999999999999999999 6689999999999999999999999999998765432210 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++|+| | ||+.|.... ...+.......... .. +......+.
T Consensus 208 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~~~~~~ 266 (350)
T 1rdq_E 208 EIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-----QPIQIYEKIVSGKV------RF----------PSHFSSDLK 266 (350)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTCCHHHH
T ss_pred HHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-----CHHHHHHHHHcCCC------CC----------CCCCCHHHH
Confidence 01123367888 6 787776421 11111111111100 00 011123466
Q ss_pred HHHhhccCCCCCCCCC-----HHHHHH
Q 041082 602 NLAMECTAESPKQRIN-----AKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~-----m~~v~~ 623 (639)
++..+|++.+|++||+ +.||.+
T Consensus 267 ~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 267 DLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 7888999999999998 777764
No 315
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.71 E-value=5.9e-18 Score=172.69 Aligned_cols=192 Identities=23% Similarity=0.256 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +|..+|+|++..... .....+..|..+++ .+|+||+++|+|.++
T Consensus 17 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~ 96 (318)
T 1fot_A 17 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL 96 (318)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHH
Confidence 468999998864 689999999875432 22334555555533 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T------ 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~------ 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 97 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aP 172 (318)
T 1fot_A 97 LRKS-QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAP 172 (318)
T ss_dssp HHHT-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCH
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCH
Confidence 8753 35889999999999999999999 6789999999999999999999999999998765432110 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++|+| | ||+.|..+. +..+......... +.- +......+.
T Consensus 173 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~i~~~~--------~~~--------p~~~~~~~~ 231 (318)
T 1fot_A 173 EVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-----NTMKTYEKILNAE--------LRF--------PPFFNEDVK 231 (318)
T ss_dssp HHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHCC--------CCC--------CTTSCHHHH
T ss_pred hHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC--------CCC--------CCCCCHHHH
Confidence 01122367888 6 777776431 1111111111110 000 001112466
Q ss_pred HHHhhccCCCCCCCC-----CHHHHHH
Q 041082 602 NLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
++..+|++.+|++|| ++.||.+
T Consensus 232 ~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 232 DLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 788899999999999 7888764
No 316
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.71 E-value=1.4e-17 Score=167.12 Aligned_cols=192 Identities=22% Similarity=0.249 Sum_probs=132.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 25 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 104 (284)
T 2vgo_A 25 GKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKE 104 (284)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHH
Confidence 468899999875 567899999865432 22345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---cc-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FT----- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~----- 534 (639)
+... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||++......... .+
T Consensus 105 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~a 180 (284)
T 2vgo_A 105 LQKH-GRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLP 180 (284)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCC
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCC
Confidence 8643 35889999999999999999999 678999999999999999999999999998765432211 00
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ...+......... ... +......+
T Consensus 181 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~------~~~----------~~~~~~~~ 239 (284)
T 2vgo_A 181 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRIVNVD------LKF----------PPFLSDGS 239 (284)
T ss_dssp HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC------CCC----------CTTSCHHH
T ss_pred HHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHHhccc------cCC----------CCcCCHHH
Confidence 01123367887 5 777776421 1111111111110 000 01112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++..|++.+|++||++.|+++
T Consensus 240 ~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 240 KDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhhcCHhhCCCHHHHhh
Confidence 67888999999999999999986
No 317
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.71 E-value=1.5e-17 Score=180.72 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+||||+++|+|..+
T Consensus 196 G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~ 275 (543)
T 3c4z_A 196 GGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYH 275 (543)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHH
Confidence 468999999875 589999999965432 22345556666543 278999999999998
Q ss_pred cccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----
Q 041082 463 LYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---- 535 (639)
Q Consensus 463 l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---- 535 (639)
+... ...+++.....++.+|+.||+||| ..+|+||||||.||+++.++.+||+|||+++.+.........
T Consensus 276 l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT 352 (543)
T 3c4z_A 276 IYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352 (543)
T ss_dssp HHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSC
T ss_pred HHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCC
Confidence 8652 346899999999999999999999 568999999999999999999999999999876543211000
Q ss_pred -----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 -----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++|+| | ||+.|..... ......++........ .. .+..
T Consensus 353 ~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~-~~~~~~~~~~~i~~~~--------~~--------~p~~ 415 (543)
T 3c4z_A 353 PGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG-EKVENKELKQRVLEQA--------VT--------YPDK 415 (543)
T ss_dssp TTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT-CCCCHHHHHHHHHHCC--------CC--------CCTT
T ss_pred ccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc-cchhHHHHHHHHhhcc--------cC--------CCcc
Confidence 0112367888 6 7877765321 1111222221111110 00 0011
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAK 619 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~ 619 (639)
....+.+++.+|++.+|++||++.
T Consensus 416 ~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 416 FSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred cCHHHHHHHHHhccCCHhHCCCCc
Confidence 123456788899999999999863
No 318
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.71 E-value=3.7e-18 Score=171.40 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=132.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.+.+
T Consensus 17 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~ 96 (284)
T 3kk8_A 17 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 96 (284)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred cCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHH
Confidence 468899999864 578999999865432 22345566666643 2689999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCc----c--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSF----T-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~----~-- 534 (639)
... ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++. +|++|||++.......... +
T Consensus 97 ~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 172 (284)
T 3kk8_A 97 VAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPG 172 (284)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGG
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcC
Confidence 643 35899999999999999999999 567999999999999987655 9999999997665432210 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | +|+.|.... ....+...+...... ...+. .....
T Consensus 173 y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~--~~~~~~~~~~~~~~~----~~~~~-----------~~~~~ 235 (284)
T 3kk8_A 173 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--DQHRLYAQIKAGAYD----YPSPE-----------WDTVT 235 (284)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CCTTT-----------TTTSC
T ss_pred CcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC--chhHHHHHHHhcccc----CCchh-----------hcccC
Confidence 00123367888 5 777776431 111111111110000 00000 01122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++..|++.+|++|||+.|+++
T Consensus 236 ~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 236 PEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHcccChhhCCCHHHHhc
Confidence 34667888999999999999999986
No 319
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.71 E-value=9.6e-18 Score=171.97 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=128.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|++..... ....+..|+..++ .+|+||+++|+
T Consensus 35 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~ 113 (326)
T 2x7f_A 35 GTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGS 113 (326)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEE
T ss_pred CCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCc
Confidence 46889999987 4688999999865432 2344555554422 26889999999
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
|.+++... ...+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........
T Consensus 114 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 190 (326)
T 2x7f_A 114 VTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI 190 (326)
T ss_dssp HHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcccccccc
Confidence 99988753 246889999999999999999999 568999999999999999999999999998865432110
Q ss_pred ------cc---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 533 ------FT---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 533 ------~~---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
.+ ....+.++||| | ||+.|..+... ...+........ +....
T Consensus 191 ~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~---------~~~~~---- 256 (326)
T 2x7f_A 191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MRALFLIPRNPA---------PRLKS---- 256 (326)
T ss_dssp CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHSCC---------CCCSC----
T ss_pred CCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH-HHHHHHhhcCcc---------ccCCc----
Confidence 00 01122367887 5 77777643110 000111111000 00000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++||++.|+++
T Consensus 257 -----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 257 -----KKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp -----SCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -----cccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 011234667888999999999999999986
No 320
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.71 E-value=3.1e-18 Score=171.87 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=133.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++. +|+||+++++|
T Consensus 16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 95 (283)
T 3bhy_A 16 GQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGEL 95 (283)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred cCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcH
Confidence 468899999875 5889999988654321 23456677766442 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++ .+|++|||+++.........
T Consensus 96 ~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~ 171 (283)
T 3bhy_A 96 FDFLAE-KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNI 171 (283)
T ss_dssp HHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCccccc
Confidence 998864 235899999999999999999999 56899999999999998876 89999999998764322110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... .-.+......... ...++..
T Consensus 172 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~--~~~~~~~---------- 234 (283)
T 3bhy_A 172 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE-----TKQETLTNISAVN--YDFDEEY---------- 234 (283)
T ss_dssp CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC--CCCCHHH----------
T ss_pred CCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc-----chHHHHHHhHhcc--cCCcchh----------
Confidence 0 01122367888 5 777776431 1111111110000 0000000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 235 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 235 FSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 0112235677889999999999999999986
No 321
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.71 E-value=1.6e-17 Score=176.95 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=105.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..||||++.... .....+..|+.+++ .+|+||+. |+|
T Consensus 108 G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L 185 (429)
T 3kvw_A 108 GSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNL 185 (429)
T ss_dssp SSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBH
T ss_pred CccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCH
Confidence 568999999764 57899999986532 22234444544432 26789996 688
Q ss_pred hhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--eeeccccccccccccCCCc--c
Q 041082 460 EKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKLLLKEDQSF--T 534 (639)
Q Consensus 460 ~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~~~~~~~~~--~ 534 (639)
.+++.... ..+++..+..|+.++++||+||| ..+|+||||||+|||++.++. +||+|||+|+......... +
T Consensus 186 ~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt 262 (429)
T 3kvw_A 186 YELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQS 262 (429)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSC
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCC
Confidence 88876533 45899999999999999999999 557999999999999999887 9999999997654332210 0
Q ss_pred ----------ccccccccccc--c-------CCCCCCCc
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 263 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 263 RFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp GGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 01123478999 7 89888753
No 322
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.71 E-value=5.2e-18 Score=176.74 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=131.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh-----------hhhhHHHHHHHHH-------------------------hhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER-----------AFKSFDVACDMMK-------------------------KLV 450 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~-----------~~~~f~~e~~~~~-------------------------~Lv 450 (639)
.++|.||++....|..+|+|++...... ....+..|+..++ .+|
T Consensus 33 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv 112 (362)
T 3pg1_A 33 GSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLV 112 (362)
T ss_dssp ETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEE
T ss_pred CCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEE
Confidence 4689999998888999999988543211 1245666666632 368
Q ss_pred hhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 451 ~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+||++ |++.+.+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......
T Consensus 113 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 188 (362)
T 3pg1_A 113 TELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA 188 (362)
T ss_dssp EECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCTTC--------
T ss_pred EccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcCCCCEEEEecCccccccccc
Confidence 88988 6888887765567999999999999999999999 5679999999999999999999999999997544322
Q ss_pred CC----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcc-----------
Q 041082 531 QS----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVM----------- 575 (639)
Q Consensus 531 ~~----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~----------- 575 (639)
.. .+. ...+.++||| | ||+.|...... ...+...+...-.....
T Consensus 189 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 267 (362)
T 3pg1_A 189 NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF-YNQLNKIVEVVGTPKIEDVVMFSSPSAR 267 (362)
T ss_dssp -------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCHHHHHHTSCHHHH
T ss_pred ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHcCCCChHHhhhccchhhh
Confidence 11 000 1123468898 6 88888753210 00111111100000000
Q ss_pred eeeeccccccccc-cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 576 EVVDVNLLSMEDK-YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 576 ~~~d~~l~~~~~~-~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+...+...... ...........+.+++.+|++.+|++|||+.|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 268 DYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 0000000000000 00000112345778999999999999999999985
No 323
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.71 E-value=6.1e-18 Score=172.77 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=131.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH----------------------------------hhhh
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK----------------------------------KLVL 451 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------------------~Lv~ 451 (639)
.++|.||++.... +..+|+|++..........+..|+..++ .+|+
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 101 (320)
T 2i6l_A 22 GGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQ 101 (320)
T ss_dssp ----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEE
T ss_pred CCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEe
Confidence 4688999998764 8899999987665555566777776643 2678
Q ss_pred hcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccC
Q 041082 452 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 452 ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~ 530 (639)
||++ |+|.+++.. ..+++.....++.++++||+||| ..+|+||||||+||+++ +++.+||+|||+++......
T Consensus 102 e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 175 (320)
T 2i6l_A 102 EYME-TDLANVLEQ--GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHY 175 (320)
T ss_dssp ECCS-EEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC----
T ss_pred eccC-CCHHHHhhc--CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCc
Confidence 8887 688888754 45889999999999999999999 56899999999999997 56799999999998764321
Q ss_pred CC--------------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc----ceee
Q 041082 531 QS--------------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVV 578 (639)
Q Consensus 531 ~~--------------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~ 578 (639)
.. .+. ...+.++||| | ||+.|..... .......+....+... .+..
T Consensus 176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 253 (320)
T 2i6l_A 176 SHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH--ELEQMQLILESIPVVHEEDRQELL 253 (320)
T ss_dssp ----CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred ccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCchhhhhhhh
Confidence 10 000 1123368998 6 8888875321 1111111111111100 0000
Q ss_pred -------eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 579 -------DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 579 -------d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....................+.+++.+|++.+|++|||+.|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 254 SVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp TTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 000000000000000112345778899999999999999999986
No 324
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.1e-16 Score=155.27 Aligned_cols=152 Identities=24% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccccc
Q 041082 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295 (639)
Q Consensus 216 L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 295 (639)
-+.++.+++.++..+..+ ..+++.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEeEccCCCcCccCCCC---------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 456666666665544321 12445555555555554444455555555555555555443334444
Q ss_pred CCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEE
Q 041082 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYL 375 (639)
Q Consensus 296 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 375 (639)
.+++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|++++|++.+..+..|..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 5555555555555555444444455555555555555554 344444455555555555555554444444444555555
Q ss_pred EcccCCCC
Q 041082 376 NLSSNFFI 383 (639)
Q Consensus 376 ~ls~N~l~ 383 (639)
++++|++.
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 55555443
No 325
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.71 E-value=1.6e-17 Score=177.32 Aligned_cols=194 Identities=21% Similarity=0.300 Sum_probs=125.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||......|..||||++..... ..+..|+..++ .+|+||+. |+|.+++..
T Consensus 26 G~~g~V~~~~~~~g~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~ 101 (434)
T 2rio_A 26 GSSGTVVFQGSFQGRPVAVKRMLIDFC---DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVES 101 (434)
T ss_dssp CSTTCEEEEEESSSSEEEEEEEEGGGH---HHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHT
T ss_pred CCCeEEEEEEEECCeEEEEEEEcHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhc
Confidence 468888777667899999999865432 23444554432 26899995 699998865
Q ss_pred CCc------cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-------------cceeeccccccccc
Q 041082 466 SNY------ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-------------MVAHLSDFGMAKLL 526 (639)
Q Consensus 466 ~~~------~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-------------~~~~i~dfgla~~~ 526 (639)
... ..++..+.+|+.+++.||+||| +.+|+||||||+||+++.+ +.+||+|||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~ 178 (434)
T 2rio_A 102 KNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKL 178 (434)
T ss_dssp C------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEEC
T ss_pred cCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceec
Confidence 321 1133345789999999999999 5689999999999999754 48999999999876
Q ss_pred cccCCC---------------ccc-----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhC
Q 041082 527 LKEDQS---------------FTQ-----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLL 570 (639)
Q Consensus 527 ~~~~~~---------------~~~-----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~ 570 (639)
...... .+. ...+.++||| | | |+.|..+..... ..++....
T Consensus 179 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~i~~~~~ 255 (434)
T 2rio_A 179 DSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE---SNIIRGIF 255 (434)
T ss_dssp CC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH---HHHHHTCC
T ss_pred CCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH---HHHhcCCC
Confidence 543211 000 1123367888 6 5 777765432111 11111111
Q ss_pred CCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 571 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... . +. ..........+.+++.+|++.+|++|||+.||++
T Consensus 256 ~~~--~-----~~------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 256 SLD--E-----MK------CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp CCC--C-----CT------TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred Ccc--c-----cc------ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 100 0 00 0012344567788999999999999999999985
No 326
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.71 E-value=8.8e-18 Score=182.14 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=133.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 33 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~ 112 (486)
T 3mwu_A 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI 112 (486)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred cCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHH
Confidence 568999999864 688999999865432 234556677776543 689999999998887
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCC----cc--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQS----FT-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~----~~-- 534 (639)
... ..+++.....|+.+++.||+||| ..+|+||||||.||+++ .++.+||+|||+|+........ .+
T Consensus 113 ~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~ 188 (486)
T 3mwu_A 113 IKR-KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY 188 (486)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGG
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCC
Confidence 643 35899999999999999999999 56899999999999995 4667999999999866433211 00
Q ss_pred ----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHh-hCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND-LLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.... ....+...+.. ..+. +. +......
T Consensus 189 y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~~------~~----------~~~~~~s 250 (486)
T 3mwu_A 189 YIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK--NEYDILKRVETGKYAF------DL----------PQWRTIS 250 (486)
T ss_dssp GCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCCS------CS----------GGGGGSC
T ss_pred CCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCCC------CC----------cccCCCC
Confidence 0 0112367888 6 788876531 11111111111 0000 00 0011122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 251 ~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 251 DDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 34668889999999999999999986
No 327
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.71 E-value=6.7e-18 Score=180.08 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=92.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|||++.... ....+.+..|+..++ .+|+||++ |+
T Consensus 37 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~ 115 (432)
T 3n9x_A 37 GSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SD 115 (432)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EE
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cC
Confidence 468999999864 57899999986432 223345666666633 36788876 58
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|.+++.. ...+++.....++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 116 L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~ 181 (432)
T 3n9x_A 116 LKKLFKT-PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINS 181 (432)
T ss_dssp HHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred HHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence 8888764 345899999999999999999999 56799999999999999999999999999987653
No 328
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.71 E-value=4e-18 Score=179.76 Aligned_cols=195 Identities=22% Similarity=0.196 Sum_probs=131.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 80 G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~ 159 (410)
T 3v8s_A 80 GAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL 159 (410)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHH
Confidence 468999999875 578999999865321 22334556666543 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~-- 534 (639)
+... .+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+|+........ .+
T Consensus 160 l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~ 234 (410)
T 3v8s_A 160 MSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPD 234 (410)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGG
T ss_pred HHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCcc
Confidence 8643 4788888999999999999999 568999999999999999999999999999876543210 00
Q ss_pred ----c----cc----cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 535 ----Q----NT----NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 535 ----~----~~----~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
. .. .+.++|+| | ||+.|.... +..+......... ....-|. .
T Consensus 235 Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-----~~~~~~~~i~~~~-~~~~~p~-----------~ 297 (410)
T 3v8s_A 235 YISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----SLVGTYSKIMNHK-NSLTFPD-----------D 297 (410)
T ss_dssp GCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTHH-HHCCCCT-----------T
T ss_pred ccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-----ChhhHHHHHHhcc-ccccCCC-----------c
Confidence 0 00 22367888 6 788776521 1111111111000 0000000 0
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQ--RINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~--RP~m~~v~~ 623 (639)
......+.+++.+|+..+|++ ||++.||.+
T Consensus 298 ~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 298 NDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp CCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 011124566788999999998 999999875
No 329
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.71 E-value=7.7e-18 Score=182.93 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=130.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++.... ......+..|+.+++ .+|+||+++|+|.+.+
T Consensus 48 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~ 127 (494)
T 3lij_A 48 GAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI 127 (494)
T ss_dssp C---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHH
Confidence 468999999865 67899999986543 222455667777744 2689999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----cc-
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----TQ- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~~- 535 (639)
... ..+++.....|+.++++||+||| ..+|+||||||+||+++. ++.+||+|||+|+......... +.
T Consensus 128 ~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~ 203 (494)
T 3lij_A 128 IHR-MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAY 203 (494)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTT
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcC
Confidence 642 35889999999999999999999 568999999999999976 4559999999998765432110 00
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... .-.+......... .....+. ......
T Consensus 204 y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~-~~~~~~~-----------~~~~s~ 266 (494)
T 3lij_A 204 YIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQ-----TDQEILRKVEKGK-YTFDSPE-----------WKNVSE 266 (494)
T ss_dssp TCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTC-CCCCSGG-----------GTTSCH
T ss_pred eeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC-CCCCchh-----------cccCCH
Confidence 0123378888 6 788876531 1111111111000 0000000 011223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 267 ~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 267 GAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHCCCChhhCccHHHHhc
Confidence 4667889999999999999999985
No 330
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.71 E-value=1.1e-17 Score=174.46 Aligned_cols=207 Identities=21% Similarity=0.242 Sum_probs=130.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..|..||+|++.... ......+..|+..++ .+|+||+ ++
T Consensus 36 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~ 114 (367)
T 1cm8_A 36 GAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GT 114 (367)
T ss_dssp ----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SE
T ss_pred cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CC
Confidence 46899999986 468999999985432 222345556666532 3678888 67
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c--
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-- 533 (639)
+|.+++.. ..+++.....++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 115 ~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~ 189 (367)
T 1cm8_A 115 DLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTR 189 (367)
T ss_dssp EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCG
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCC
Confidence 88888764 35889999999999999999999 568999999999999999999999999999876543211 0
Q ss_pred ----cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCccee---ee-----------cc
Q 041082 534 ----TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEV---VD-----------VN 581 (639)
Q Consensus 534 ----~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~---~d-----------~~ 581 (639)
+. ...+.+.||| | ||+.|.... +......-+.........+. +. +.
T Consensus 190 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 267 (367)
T 1cm8_A 190 WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE 267 (367)
T ss_dssp GGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCC
T ss_pred CcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCC
Confidence 00 1123478998 6 888887531 11111111101000000000 00 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ...........+.++..+|++.+|++|||+.|+++
T Consensus 268 ~~~~~--~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 268 LEKKD--FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CCCCC--GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCC--HHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000 00001112335677888999999999999999986
No 331
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.6e-17 Score=152.92 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=120.3
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
.+.+++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+..+..+++|++|+|++|++++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788999999999998 566 6889999999999999664 345788999999999999999887777787776666
Q ss_pred EEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 152 DLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 152 ~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
+|+|++|. +++..|..+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.+++.+
T Consensus 116 ~L~Ls~n~------------------i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 116 LLDISHSA------------------HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp EEECCSSB------------------CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred EEEecCCc------------------cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 66555554 445667778899999999999998334445 5899999999999999998743
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCcccc
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~ 264 (639)
. +. ..++|+.|++++|++.+
T Consensus 176 ~------l~-------~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 G------IE-------DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T------GG-------GCSSCCEEEECBC----
T ss_pred H------hc-------cCCCCCEEEeeCcccCC
Confidence 1 11 13478899999998865
No 332
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=167.79 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=131.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh----hhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE----RAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~----~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++| +
T Consensus 16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l 94 (305)
T 2wtk_C 16 GSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-M 94 (305)
T ss_dssp CSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-H
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-H
Confidence 468899999864 578999999875432 22345666666632 3688999876 5
Q ss_pred hhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------
Q 041082 460 EKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 460 ~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
.+.+.. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 171 (305)
T 2wtk_C 95 QEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTS 171 (305)
T ss_dssp HHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCC
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccC
Confidence 555543 3346899999999999999999999 568999999999999999999999999999876432110
Q ss_pred -c------cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 533 -F------TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 533 -~------~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. +. ...+.++||| | ||+.|... ....+......... ..+
T Consensus 172 ~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~i~~~~------~~~-------- 232 (305)
T 2wtk_C 172 QGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEG-----DNIYKLFENIGKGS------YAI-------- 232 (305)
T ss_dssp CSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHCC------CCC--------
T ss_pred CCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHhcCC------CCC--------
Confidence 0 00 0113367888 6 77777652 12222211111000 000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+..+...+.+++.+|++.+|++||++.|+++.
T Consensus 233 --~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 233 --PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp --CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --CCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 01122346678889999999999999999864
No 333
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.70 E-value=9.4e-18 Score=174.91 Aligned_cols=195 Identities=21% Similarity=0.229 Sum_probs=125.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHH-H--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDM-M--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++...... ....+..|... + .++|+||+++|+|.+
T Consensus 49 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 128 (373)
T 2r5t_A 49 GSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFY 128 (373)
T ss_dssp CTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 4788999998654321 11222233322 1 137899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 129 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~ 204 (373)
T 2r5t_A 129 HLQRE-RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPE 204 (373)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCC
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCcc
Confidence 88642 35788888899999999999999 668999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | +|+.|.... +..+.......... .+.+ ...
T Consensus 205 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~--~~~~--------------~~~ 263 (373)
T 2r5t_A 205 YLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----NTAEMYDNILNKPL--QLKP--------------NIT 263 (373)
T ss_dssp CCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----BHHHHHHHHHHSCC--CCCS--------------SSC
T ss_pred ccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhccc--CCCC--------------CCC
Confidence 0112367777 5 777776421 11111111110000 0000 111
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+.+++.+|++.+|++||++.+.++.+.
T Consensus 264 ~~~~~li~~lL~~dp~~R~~~~~~~~~i~ 292 (373)
T 2r5t_A 264 NSARHLLEGLLQKDRTKRLGAKDDFMEIK 292 (373)
T ss_dssp HHHHHHHHHHTCSSGGGSTTTTTTHHHHH
T ss_pred HHHHHHHHHHcccCHHhCCCCCCCHHHHh
Confidence 24567888999999999999975554443
No 334
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.70 E-value=5.6e-18 Score=183.70 Aligned_cols=196 Identities=22% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|||++.... ......+..|+..++ .+|+||+++|+|.+.
T Consensus 37 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 116 (484)
T 3nyv_A 37 GSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDE 116 (484)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHH
Confidence 468999999865 68999999986443 223455667777644 268999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCC----cc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQS----FT- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~----~~- 534 (639)
+... ..+++.....|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+........ .+
T Consensus 117 ~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~ 192 (484)
T 3nyv_A 117 IISR-KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTA 192 (484)
T ss_dssp HHTC-SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCc
Confidence 8643 45899999999999999999999 5679999999999999 46789999999999876543211 00
Q ss_pred -----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.... ....+...+...... ++ . +......
T Consensus 193 ~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~-----~~--~--------~~~~~~s 255 (484)
T 3nyv_A 193 YYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGA--NEYDILKKVEKGKYT-----FE--L--------PQWKKVS 255 (484)
T ss_dssp GTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHCCCC-----CC--S--------GGGGGSC
T ss_pred cccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHcCCCC-----CC--C--------cccccCC
Confidence 0 0123378888 6 888887531 111222222111000 00 0 0011122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 256 ~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 256 ESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 34667889999999999999999985
No 335
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.70 E-value=1e-17 Score=176.22 Aligned_cols=115 Identities=24% Similarity=0.416 Sum_probs=86.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..|..+|+|++.... ......+..|+..++ .+|+|||+ |+|.
T Consensus 20 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~ 98 (388)
T 3oz6_A 20 GAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLH 98 (388)
T ss_dssp ----CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHH
Confidence 46899999975 468999999885322 122233444444422 36889997 5888
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.++.. ..+++..+..++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+.
T Consensus 99 ~~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 99 AVIRA--NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp HHHHH--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 87764 35889999999999999999999 6689999999999999999999999999998653
No 336
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.70 E-value=1.7e-17 Score=174.91 Aligned_cols=213 Identities=20% Similarity=0.169 Sum_probs=133.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------------hhhhhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------------KLVLEY 453 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------------~Lv~ey 453 (639)
.++|.||++.. .++..+|+|++.... .....+..|+..++ .+||||
T Consensus 48 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~ 126 (397)
T 1wak_A 48 GHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEV 126 (397)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECC
T ss_pred cCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEec
Confidence 46899999975 467899999986432 22234444544422 257788
Q ss_pred CCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-------------------
Q 041082 454 MPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM------------------- 513 (639)
Q Consensus 454 ~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~------------------- 513 (639)
+ +|++.+.+.. ....+++..+..|+.++++||+|||..+ +|+||||||.||+++.++
T Consensus 127 ~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~ 203 (397)
T 1wak_A 127 L-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAP 203 (397)
T ss_dssp C-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHHC--------
T ss_pred c-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCC
Confidence 8 4556555543 3356899999999999999999999422 799999999999999775
Q ss_pred ------------------------------ceeeccccccccccccCCCc--c----------ccccccccccc--c---
Q 041082 514 ------------------------------VAHLSDFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G--- 546 (639)
Q Consensus 514 ------------------------------~~~i~dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G--- 546 (639)
.+||+|||+|+......... + ....+.++||| |
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il 283 (397)
T 1wak_A 204 PPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMA 283 (397)
T ss_dssp -------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHH
T ss_pred CCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHH
Confidence 79999999998765432210 0 01123478999 7
Q ss_pred ----CCCCCCCccCCCcc-----chHHHHHhh--CCCC-------cceeeecc--cc--------c---cccccccchHH
Q 041082 547 ----TRRNPQMNFFSGEM-----TLKSWVNDL--LPIS-------VMEVVDVN--LL--------S---MEDKYFTTKKQ 595 (639)
Q Consensus 547 ----tg~~p~~~~~~~~~-----~l~~~~~~~--~~~~-------~~~~~d~~--l~--------~---~~~~~~~~~~~ 595 (639)
||+.|......... .+....... .+.. ..+.++.. +. . ..........+
T Consensus 284 ~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
T 1wak_A 284 FELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQE 363 (397)
T ss_dssp HHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHH
T ss_pred HHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchh
Confidence 89888764321111 011111000 0000 00000000 00 0 00000112355
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...+.+++.+|++.+|++|||+.||++
T Consensus 364 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 364 EAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 6678899999999999999999999985
No 337
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.70 E-value=1.1e-17 Score=172.92 Aligned_cols=197 Identities=21% Similarity=0.239 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-----ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+..++ .+|+||+++|+|.
T Consensus 37 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~ 116 (345)
T 3hko_A 37 GSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLL 116 (345)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHH
T ss_pred cCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHH
Confidence 46889999986 457889999986543 223456667776644 2789999999999
Q ss_pred hcccc---------------------------------------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeec
Q 041082 461 KCLYS---------------------------------------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501 (639)
Q Consensus 461 ~~l~~---------------------------------------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~d 501 (639)
+++.. ....+++.....|+.++++||+||| ..+|+|||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 193 (345)
T 3hko_A 117 DKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH---NQGICHRD 193 (345)
T ss_dssp HHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH---HTTEECCC
T ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccC
Confidence 88742 0112356677889999999999999 56799999
Q ss_pred CCCCceeecCCc--ceeeccccccccccccCCC---------------ccc------cccccccccc--c-------CCC
Q 041082 502 LKLSNVLLGNNM--VAHLSDFGMAKLLLKEDQS---------------FTQ------NTNTCHHRIY--G-------TRR 549 (639)
Q Consensus 502 lk~~nill~~~~--~~~i~dfgla~~~~~~~~~---------------~~~------~~~~~~~dvy--G-------tg~ 549 (639)
|||+||+++.++ .+||+|||+++.+...... .+. ...+.++||| | ||+
T Consensus 194 lkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~ 273 (345)
T 3hko_A 194 IKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGA 273 (345)
T ss_dssp CCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 999999998766 8999999999865431110 000 1112366777 5 666
Q ss_pred CCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 550 NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 550 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.|.... .-.+........ ..... ..........+.+++..|++.+|++||++.|+++
T Consensus 274 ~pf~~~-----~~~~~~~~~~~~--------~~~~~----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 274 VPFPGV-----NDADTISQVLNK--------KLCFE----NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp CSSCCS-----SHHHHHHHHHHC--------CCCTT----SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCCC-----ChHHHHHHHHhc--------ccccC----CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 665421 111111111100 00000 0000112235677888999999999999999986
No 338
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.70 E-value=4.1e-18 Score=172.91 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 20 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 99 (304)
T 2jam_A 20 GAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE 99 (304)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH
T ss_pred CCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHH
Confidence 468899999864 68899999987654433445666776643 268999999999988764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCC---------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQS---------F 533 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~---------~ 533 (639)
. ..+++.....++.+++.||+||| ..+|+||||||+||++ ++++.+|++|||+++........ .
T Consensus 100 ~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~a 175 (304)
T 2jam_A 100 R-GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVA 175 (304)
T ss_dssp H-SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccC
Confidence 2 35889999999999999999999 5689999999999999 78899999999999865432111 0
Q ss_pred cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
+. ...+.++||| | ||+.|.... ....+.+-+...... +.... .......+
T Consensus 176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~-----~~~~~----------~~~~~~~~ 238 (304)
T 2jam_A 176 PEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE--TESKLFEKIKEGYYE-----FESPF----------WDDISESA 238 (304)
T ss_dssp TTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHCCCC-----CCTTT----------TTTSCHHH
T ss_pred hHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHcCCCC-----CCccc----------cccCCHHH
Confidence 00 1123378888 6 787776431 111111111111000 00000 01122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 239 KDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 77889999999999999999986
No 339
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.69 E-value=4.6e-18 Score=172.20 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=96.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------------------~Lv~e 452 (639)
.++|.||++.. .++..+|+|.+.... .....+..|+..++ .+|+|
T Consensus 17 G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 95 (303)
T 1zy4_A 17 GAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQME 95 (303)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEE
T ss_pred CCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEe
Confidence 46889999986 468899999986432 23345666666532 26789
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|+++|+|.+++......+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++...
T Consensus 96 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 167 (303)
T 1zy4_A 96 YCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVH 167 (303)
T ss_dssp CCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTT
T ss_pred cCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeCcchhhcc
Confidence 99999999999765566888999999999999999999 5679999999999999999999999999998664
No 340
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.69 E-value=1.4e-17 Score=171.06 Aligned_cols=211 Identities=20% Similarity=0.177 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..+..+|+|++...... ....+..|+..++ .+|+||++ |+|.+++
T Consensus 45 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~ 123 (329)
T 3gbz_A 45 GTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYM 123 (329)
T ss_dssp CSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHH
T ss_pred cCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHH
Confidence 56899999974 46889999998654322 2334556666643 26899998 5898887
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee-----cCCcceeeccccccccccccCCC------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL-----GNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill-----~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
... ..+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+........
T Consensus 124 ~~~-~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 199 (329)
T 3gbz_A 124 DKN-PDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEII 199 (329)
T ss_dssp HHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------
T ss_pred hhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcC
Confidence 643 35899999999999999999999 5689999999999999 45566999999999876432111
Q ss_pred -----ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC--cceee-eccccccc-cc
Q 041082 533 -----FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS--VMEVV-DVNLLSME-DK 588 (639)
Q Consensus 533 -----~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~-d~~l~~~~-~~ 588 (639)
.+. ...+.++||| | ||+.|..... ....+...+... .+.. ..... .+...... ..
T Consensus 200 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (329)
T 3gbz_A 200 TLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDS-EIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKF 278 (329)
T ss_dssp CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC
T ss_pred CccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCC-HHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhh
Confidence 000 1124478998 6 8888765321 111111111111 1110 00000 00000000 00
Q ss_pred cccchH-----HHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKK-----QCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~-----~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... .....+.+++.+|++.+|++|||+.|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 279 RGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp CCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 000001 12245678999999999999999999975
No 341
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.69 E-value=1.1e-17 Score=182.26 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=132.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-------------hhhhhHHHHHHHHH--------------------hhhhh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-------------RAFKSFDVACDMMK--------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-------------~~~~~f~~e~~~~~--------------------~Lv~e 452 (639)
.++|.||++... .+..+|+|++..... .....+..|+.+++ .+|+|
T Consensus 47 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 126 (504)
T 3q5i_A 47 GAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTE 126 (504)
T ss_dssp --CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEe
Confidence 468999999865 578999999864331 12345666776644 26899
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeecccccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKE 529 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~ 529 (639)
|+++|+|.+.+... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+|+.....
T Consensus 127 ~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~ 202 (504)
T 3q5i_A 127 FYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD 202 (504)
T ss_dssp CCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTT
T ss_pred cCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCC
Confidence 99999999888642 35899999999999999999999 56899999999999998765 6999999999876543
Q ss_pred CCCccc-------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 530 DQSFTQ-------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 530 ~~~~~~-------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
...... ...+.++||| | +|+.|.... .-.+.+........ .++..
T Consensus 203 ~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~--~~~~~------ 269 (504)
T 3q5i_A 203 YKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQ-----NDQDIIKKVEKGKY--YFDFN------ 269 (504)
T ss_dssp SCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC--CCCHH------
T ss_pred CccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCC--CCCcc------
Confidence 211000 0123367888 6 787776531 11111111110000 00000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.++...|++.+|++|||+.|+++
T Consensus 270 ----~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 270 ----DWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp ----HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----ccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00112235677889999999999999999985
No 342
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.69 E-value=1.4e-17 Score=171.96 Aligned_cols=116 Identities=27% Similarity=0.337 Sum_probs=94.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+|+||+++|+|.+
T Consensus 20 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~ 99 (345)
T 3a8x_A 20 GSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMF 99 (345)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 578999999875432 22334445555432 26899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 100 ~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~ 160 (345)
T 3a8x_A 100 HMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 160 (345)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864
No 343
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.69 E-value=2.9e-17 Score=168.38 Aligned_cols=211 Identities=21% Similarity=0.264 Sum_probs=131.9
Q ss_pred CCcCcceEEEe--cCCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcC
Q 041082 407 SGFGSIYKARI--QDGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l--~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~ 454 (639)
.++|.||++.. .++..+|+|++...... ....+..|+..++ .+|+||+
T Consensus 22 G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~ 101 (326)
T 1blx_A 22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 101 (326)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECC
T ss_pred cccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecC
Confidence 46889999987 46789999988643321 1223434443321 2678888
Q ss_pred CCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 455 PHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 455 ~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
+ |+|.+++... ...+++..+..++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........
T Consensus 102 ~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 177 (326)
T 1blx_A 102 D-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALT 177 (326)
T ss_dssp S-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGC
T ss_pred C-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecCcccccccCCCCcc
Confidence 7 6998888653 335899999999999999999999 568999999999999999999999999999876432110
Q ss_pred ---cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--CCC--cc-eeeecc--cc
Q 041082 533 ---FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--PIS--VM-EVVDVN--LL 583 (639)
Q Consensus 533 ---~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~~~--~~-~~~d~~--l~ 583 (639)
.+ ....+.++||| | ||+.|.... ........+.... +.. .. +...++ ..
T Consensus 178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 1blx_A 178 SVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH 255 (326)
T ss_dssp CCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSC
T ss_pred ccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHcCCCCcccCccccccchhhhc
Confidence 00 01123478999 6 888887532 1111111111111 100 00 000000 00
Q ss_pred ccc-cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SME-DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... .............+.+++.+|++.+|++||++.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 256 SKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000 0000001112345677889999999999999999985
No 344
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.69 E-value=2.5e-17 Score=177.20 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=88.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..||||++.... ....+.+..|+.+++ ++|+||+. |+
T Consensus 64 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~ 142 (458)
T 3rp9_A 64 GSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SD 142 (458)
T ss_dssp ----CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EE
T ss_pred cCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cc
Confidence 468999999754 68899999985432 223345666776643 35778764 67
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+++.. ...+++.....++.++++||+||| ..+|+||||||+|||++.++.+||+|||+|+...
T Consensus 143 L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~ 207 (458)
T 3rp9_A 143 FKKLFRT-PVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVD 207 (458)
T ss_dssp HHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred hhhhccc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence 8777764 345899999999999999999999 5689999999999999999999999999998764
No 345
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.69 E-value=2.5e-17 Score=166.61 Aligned_cols=212 Identities=22% Similarity=0.221 Sum_probs=132.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... +|..+|+|.+..... .....+..|+..++ .+|+||++ |+|.+++
T Consensus 14 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~L~~~~ 92 (299)
T 2r3i_A 14 GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFM 92 (299)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHH
T ss_pred CCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEEccc-CCHHHHH
Confidence 468899999875 688999999865432 22345666666643 26889997 6888887
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
... ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y 169 (299)
T 2r3i_A 93 DASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 169 (299)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTSCBCCCTT
T ss_pred HhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCccccCcccccccc
Confidence 653 245889999999999999999999 568999999999999999999999999999765432111
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC-c----ce--eeecccccccccc
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS-V----ME--VVDVNLLSMEDKY 589 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~-~----~~--~~d~~l~~~~~~~ 589 (639)
.+. ...+.++||| | ||+.|..... ....+...++..- +.. . .. ...+.........
T Consensus 170 ~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (299)
T 2r3i_A 170 RAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDS-EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQD 248 (299)
T ss_dssp CCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCC
T ss_pred cCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchh
Confidence 000 1123478999 6 8888875321 0111111111111 110 0 00 0001000000000
Q ss_pred -ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 -FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 -~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..........+.+++.+|++.+|++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 249 FSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp HHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0000112245678889999999999999999986
No 346
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.69 E-value=3.2e-17 Score=169.96 Aligned_cols=210 Identities=18% Similarity=0.210 Sum_probs=131.2
Q ss_pred CCcCcceEEEec-CC-ceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DG-MKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g-~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+ ..+|+|++.... .....+..|+..++ .+|+||+ +|+
T Consensus 30 G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~ 107 (355)
T 2eu9_A 30 GTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL-GKN 107 (355)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC-CCB
T ss_pred cCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc-CCC
Confidence 468899999864 33 689999986432 22234444444422 2678999 556
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee-------------------cCCcceeec
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL-------------------GNNMVAHLS 518 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill-------------------~~~~~~~i~ 518 (639)
+.+.+... ...+++..+..|+.++++||+||| ..+|+||||||+||++ +.++.+||+
T Consensus 108 l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 184 (355)
T 2eu9_A 108 TFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVA 184 (355)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEEC
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEe
Confidence 66666543 346899999999999999999999 6789999999999999 668899999
Q ss_pred cccccccccccCCCc--c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCc
Q 041082 519 DFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISV 574 (639)
Q Consensus 519 dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~ 574 (639)
|||+++......... + ....+.++||| | ||+.|....- .......+.... |...
T Consensus 185 Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~ 262 (355)
T 2eu9_A 185 DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE--NREHLVMMEKILGPIPSHM 262 (355)
T ss_dssp CCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHH
T ss_pred ecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCcHHH
Confidence 999998654332210 0 01123478999 6 8888876321 111111111111 1000
Q ss_pred -------ceeeeccccccc---------------cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 575 -------MEVVDVNLLSME---------------DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 575 -------~~~~d~~l~~~~---------------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
............ .........+...+.+++.+|++.+|++|||+.||++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 263 IHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 000000000000 0000011233457889999999999999999999984
No 347
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.69 E-value=2.3e-17 Score=177.21 Aligned_cols=206 Identities=20% Similarity=0.182 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+..++ .+|+||++++
T Consensus 73 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~ 152 (464)
T 3ttj_A 73 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN 152 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCCC
Confidence 56899999975 468899999986432 223345556665532 4678888764
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
+.+.+.. .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+.........
T Consensus 153 -l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~g 225 (464)
T 3ttj_A 153 -LCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 225 (464)
T ss_dssp -HHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----C
T ss_pred -HHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcc
Confidence 5555432 3889999999999999999999 5689999999999999999999999999998765432110
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHH--hhCCCC-------------------
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN--DLLPIS------------------- 573 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~--~~~~~~------------------- 573 (639)
+ ....+.+.||| | +|+.|.... .....|.. ......
T Consensus 226 t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~----~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~ 301 (464)
T 3ttj_A 226 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR----DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENR 301 (464)
T ss_dssp CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTS
T ss_pred cccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcc
Confidence 0 01123378999 7 888887531 11111110 000000
Q ss_pred --cceeeeccccccc--cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 --VMEVVDVNLLSME--DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 --~~~~~d~~l~~~~--~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....--+...... ....+........+.++..+|++.+|++|||+.|+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 302 PKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp CCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000000000 0000111223456888999999999999999999986
No 348
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.68 E-value=2.8e-17 Score=165.34 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++. +|+||+++++|.+.+
T Consensus 33 G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 112 (287)
T 2wei_A 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI 112 (287)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred CCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHH
Confidence 468899999875 688999999865432 234456667766432 688999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCcc------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT------ 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~~------ 534 (639)
... ..+++..+..++.++++||+||| ..+++||||||+||+++. +..+|++|||+++..........
T Consensus 113 ~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~ 188 (287)
T 2wei_A 113 IKR-KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY 188 (287)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHT
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCccc
Confidence 542 35899999999999999999999 568999999999999975 45799999999987654321100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ....+...+.. ... ..+. ........
T Consensus 189 y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~---~~~--~~~~----------~~~~~~~~ 251 (287)
T 2wei_A 189 YIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK--NEYDILKRVET---GKY--AFDL----------PQWRTISD 251 (287)
T ss_dssp TCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHH---CCC--CCCS----------GGGTTSCH
T ss_pred ccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHc---CCC--CCCc----------hhhhhcCH
Confidence 00123367888 6 787776531 11111111111 000 0000 00011223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 252 ~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 252 DAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHcccChhhCcCHHHHhc
Confidence 5677889999999999999999986
No 349
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.68 E-value=3e-17 Score=170.21 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=91.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH-------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK-------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+..... .....+..|+..++ .+|+||++ |+|
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L 100 (353)
T 2b9h_A 22 GAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDL 100 (353)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEH
T ss_pred CCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccH
Confidence 468899999865 688999999864322 22344556666533 25677876 578
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.+++.. ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++...
T Consensus 101 ~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 101 HRVIST--QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred HHHHhh--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 777654 35899999999999999999999 5689999999999999999999999999998764
No 350
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=167.64 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=117.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hh-hhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AF-KSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~-~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... +|..+|+|.+...... .. ..+..+...++ .+|+||+ ++.+....
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~ 114 (318)
T 2dyl_A 36 GTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLK 114 (318)
T ss_dssp ----CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHH
T ss_pred cCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHH
Confidence 468899999875 6889999998654321 11 11222222211 2678888 33443333
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------c
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------F 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------~ 533 (639)
......+++..+..++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a 192 (318)
T 2dyl_A 115 KRMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMA 192 (318)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccC
Confidence 32334689999999999999999999941 37999999999999999999999999999765432211 0
Q ss_pred c---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 T---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 ~---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+ ....+.++||| | ||+.|..... .-.+.......... +.+.. ...
T Consensus 193 PE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~-----~~~~~--------~~~ 255 (318)
T 2dyl_A 193 PERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK----TDFEVLTKVLQEEP-----PLLPG--------HMG 255 (318)
T ss_dssp HHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC----SHHHHHHHHHHSCC-----CCCCS--------SSC
T ss_pred hhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC----ccHHHHHHHhccCC-----CCCCc--------cCC
Confidence 0 01122367888 6 7777765311 11111111111100 00000 001
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++||++.|+++
T Consensus 256 ~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 256 FSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1234667888999999999999999986
No 351
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.67 E-value=4e-17 Score=171.32 Aligned_cols=169 Identities=22% Similarity=0.238 Sum_probs=107.5
Q ss_pred hhhhcCCCCCchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccc
Q 041082 449 LVLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAK 524 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~ 524 (639)
+||||++ |+|.+.+.. ....+++.....++.++++||+||| ..+|+||||||+||+++ .++.+||+|||+|+
T Consensus 115 lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~ 190 (383)
T 3eb0_A 115 VIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAK 190 (383)
T ss_dssp EEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred EEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCc
Confidence 7899998 577776653 3456899999999999999999999 67899999999999998 68999999999998
Q ss_pred cccccCCCc----------cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC-------
Q 041082 525 LLLKEDQSF----------TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------- 573 (639)
Q Consensus 525 ~~~~~~~~~----------~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------- 573 (639)
.+....... +. ...+.++||| | +|+.|..... ....+...+...-...
T Consensus 191 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~i~~~~g~p~~~~~~~~ 269 (383)
T 3eb0_A 191 KLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGET-SIDQLVRIIQIMGTPTKEQMIRM 269 (383)
T ss_dssp ECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHH
T ss_pred ccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCCHHHHHHh
Confidence 764332110 00 1123478998 6 8888875321 1111222221111000
Q ss_pred ---cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 ---VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 ---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+..-+.+.... .....+......+.+++.+|++.+|++|||+.|+++
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 270 NPHYTEVRFPTLKAKD-WRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp CTTC--CCCCCCCCCC-HHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CcccccccCCccCccc-HHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000001110000 000001112345778999999999999999999984
No 352
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.67 E-value=5.9e-17 Score=169.33 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=131.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------------------hhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------------------KLV 450 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------------------~Lv 450 (639)
.++|.||++.. ..+..+|+|++..... ....+..|+..++ .+|
T Consensus 30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv 108 (373)
T 1q8y_A 30 GHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 108 (373)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEEecCCCcEEEEEEecCCcc-chhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEE
Confidence 46899999985 5688999999864321 1223333333311 256
Q ss_pred hhcCCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec------CCcceeecccccc
Q 041082 451 LEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG------NNMVAHLSDFGMA 523 (639)
Q Consensus 451 ~ey~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~------~~~~~~i~dfgla 523 (639)
+||+ +++|.+++.. ....+++..+..|+.+++.||+|||.. .+|+||||||+||+++ ..+.+||+|||++
T Consensus 109 ~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a 185 (373)
T 1q8y_A 109 FEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNA 185 (373)
T ss_dssp ECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTC
T ss_pred EecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcCcceEEEcccccc
Confidence 7888 7899888865 234589999999999999999999942 2799999999999994 4458999999999
Q ss_pred ccccccCCC--cc----------ccccccccccc--c-------CCCCCCCccCCC-----ccchHHHHHhh--------
Q 041082 524 KLLLKEDQS--FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSG-----EMTLKSWVNDL-------- 569 (639)
Q Consensus 524 ~~~~~~~~~--~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~-----~~~l~~~~~~~-------- 569 (639)
+........ .+ ....+.++||| | ||+.|....... ...+...+...
T Consensus 186 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (373)
T 1q8y_A 186 CWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLL 265 (373)
T ss_dssp EETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHH
T ss_pred cccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHH
Confidence 876543221 00 01123478999 7 888887642111 01111111100
Q ss_pred ---------CCC-Cc-ceeeecccccc---ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 570 ---------LPI-SV-MEVVDVNLLSM---EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 570 ---------~~~-~~-~~~~d~~l~~~---~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.. .. ..+........ .......+..+...+.+++.+|++.+|++|||+.||++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 266 RNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred hccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 000 00 00000000000 00011123456678889999999999999999999986
No 353
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=7.9e-17 Score=159.61 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=100.6
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+.++..+++++|.+++. + .+..+++|+.|++++|.+.. +| .+..+++|++|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 445566677777777643 3 56677777777777777764 34 56777777777777777775544 6666666666
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
+|++|.++++ |... . ++|+.|++++|.+++. + .++.+++|+.|++++|++++.
T Consensus 91 ~L~~N~l~~l-------------------~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~---- 143 (263)
T 1xeu_A 91 SVNRNRLKNL-------------------NGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI---- 143 (263)
T ss_dssp ECCSSCCSCC-------------------TTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC----
T ss_pred ECCCCccCCc-------------------Cccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC----
Confidence 6666665542 1111 1 5566666666666553 2 355666666666666655432
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
+.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 144 ----------------------------------~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 ----------------------------------VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----------------------------------GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ----------------------------------hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 1233445566666666665543 344555555555555555543
No 354
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.67 E-value=4.6e-17 Score=168.93 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=128.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++... .|..+|+|.+..... .....+..|+..++ .+|+||++ |
T Consensus 35 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~ 113 (353)
T 3coi_A 35 GAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-T 113 (353)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-E
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-C
Confidence 468999999864 689999999864322 22345555665532 35677876 5
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+.+.. .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 114 ~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~ 187 (353)
T 3coi_A 114 DLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 187 (353)
T ss_dssp EGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSB
T ss_pred CHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCc
Confidence 77776642 4899999999999999999999 568999999999999999999999999999865432211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--CCC-c-ceeeec-------cccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--PIS-V-MEVVDV-------NLLS 584 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~~~-~-~~~~d~-------~l~~ 584 (639)
.+. ...+.++||| | ||+.|....- ......-+.... +.. . ..+.+. .+..
T Consensus 188 ~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (353)
T 3coi_A 188 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ 265 (353)
T ss_dssp CCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC--HHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCB
T ss_pred CcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcC
Confidence 000 1223478999 6 8888875321 111111110000 000 0 000000 0000
Q ss_pred c-ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 585 M-EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 585 ~-~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. ..............+.+++.+|++.+|++|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 266 TPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp CSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0 00000001122345778889999999999999999985
No 355
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.9e-16 Score=146.16 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=65.0
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCc-cccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.+++++++++ .+|..+.. +|++|+|++|.+++..|. .|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666664 56665553 788888888888765554 3677777777777777777777777777777777777777
Q ss_pred cCccccCccccCCCCCCEEec
Q 041082 135 FLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~L 155 (639)
++++..+..|.++++|++|+|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEEC
T ss_pred cCCccCHHHhcCCCCCCEEEC
Confidence 777666555555444333333
No 356
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.67 E-value=5.4e-17 Score=178.73 Aligned_cols=209 Identities=22% Similarity=0.222 Sum_probs=133.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .+|..+|+|++.... ......+..|+.+++ .+|+||+++|+
T Consensus 25 G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggs 104 (676)
T 3qa8_A 25 GGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGD 104 (676)
T ss_dssp CSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCB
T ss_pred CCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCC
Confidence 56889999876 458899999886432 223345666666632 27899999999
Q ss_pred chhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCc
Q 041082 459 LEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSF 533 (639)
Q Consensus 459 L~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~ 533 (639)
|.+++.... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++. +||+|||+++.........
T Consensus 105 L~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~ 181 (676)
T 3qa8_A 105 LRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCT 181 (676)
T ss_dssp HHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCC
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccc
Confidence 999987532 35888889999999999999999 567999999999999996654 9999999998765432110
Q ss_pred ----------cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc-ceeeecccccccc--
Q 041082 534 ----------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDVNLLSMED-- 587 (639)
Q Consensus 534 ----------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~~l~~~~~-- 587 (639)
+. ...+.++||| | ||+.|... +.....|......... ...++....+...
T Consensus 182 ~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~----~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~ 257 (676)
T 3qa8_A 182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP----NWQPVQWHGKVREKSNEHIVVYDDLTGAVKFS 257 (676)
T ss_dssp CCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS----SCHHHHSSTTCC------CCSCCCCSSSCCCC
T ss_pred cccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc----ccchhhhhhhhhcccchhhhhhhhhccccccc
Confidence 00 1123478999 6 89888753 2222334322211110 0011111100000
Q ss_pred ----ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 588 ----KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 588 ----~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
............+.+++..|++.+|++|||+.|++
T Consensus 258 ~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 258 SVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp SSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred cccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 00011123455678889999999999999998843
No 357
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.67 E-value=4e-17 Score=167.43 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHH-HHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACD-MMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~-~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... +|..+|+|.+..... .....+..+.. .++ .+|+||+++ +|.+++
T Consensus 33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~ 111 (327)
T 3aln_A 33 GAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST-SFDKFY 111 (327)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHH
Confidence 468999999874 688999999865422 12223333333 211 268899985 776665
Q ss_pred cc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 464 YS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 464 ~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.. ....+++..+.+++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~ 189 (327)
T 3aln_A 112 KYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCR 189 (327)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------------
T ss_pred HHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCc
Confidence 42 235689999999999999999999942 27999999999999999999999999999876432211
Q ss_pred ---ccc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 ---FTQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 ---~~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+. ...+.++||| | ||+.|..... ...+.+....... .+.+.. ..
T Consensus 190 ~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~-----~~~~~~------~~ 254 (327)
T 3aln_A 190 PYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN----SVFDQLTQVVKGD-----PPQLSN------SE 254 (327)
T ss_dssp ----------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC-----CCCCCC------CS
T ss_pred cccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc----hHHHHHHHHhcCC-----CCCCCC------cc
Confidence 000 0123367777 5 7777764311 0011111100000 000100 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+...+.+++..|++.+|++||++.||++
T Consensus 255 ~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 255 EREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0112335778889999999999999999985
No 358
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=9.4e-18 Score=189.90 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=75.9
Q ss_pred CCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc
Q 041082 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF 203 (639)
Q Consensus 124 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 203 (639)
+.++.|+|.+|.+... +.. .|+.++|+.|.|++ ++++.|.+. ..|..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------cccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 4466667777766542 222 24445555554432 233444444 44556666677777777777766
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCC
Q 041082 204 DLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 204 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 283 (639)
. +|..+..+++|++|+|++|.++.++..+ .+ ..+|+.|++++|.++ .+|..++.+++|++|+|++
T Consensus 238 ~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~------~~-------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 238 N-ISANIFKYDFLTRLYLNGNSLTELPAEI------KN-------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp C-CCGGGGGCCSCSCCBCTTSCCSCCCGGG------GG-------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred C-CChhhcCCCCCCEEEeeCCcCcccChhh------hC-------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 3 3444446677777777777666432211 11 124455555555555 3455555666666666666
Q ss_pred CCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCC-CcEEECCCCcCcccCCc
Q 041082 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLAS-LYELDLSGNKLSGSIPT 340 (639)
Q Consensus 284 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~ 340 (639)
|.|+ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 303 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 303 NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6664 44555666666666666666666655555543321 12345556666555554
No 359
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.66 E-value=5.1e-17 Score=172.57 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..||||++..... .+..|+++++ .+|+||+++ ++
T Consensus 65 G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l 139 (420)
T 1j1b_A 65 GSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TV 139 (420)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EH
T ss_pred CCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cH
Confidence 568999999975 589999998854321 1223444432 257888885 55
Q ss_pred hhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeeccccccccccccCCCc--
Q 041082 460 EKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+.+.. ....+++.....++.++++||+||| ..+|+||||||+|||++.+ +.+||+|||+|+.+.......
T Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~ 216 (420)
T 1j1b_A 140 YRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY 216 (420)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSC
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceee
Confidence 554432 3456899999999999999999999 6789999999999999965 678999999998764332110
Q ss_pred --------cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC---------Ccceeeecc
Q 041082 534 --------TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI---------SVMEVVDVN 581 (639)
Q Consensus 534 --------~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~---------~~~~~~d~~ 581 (639)
+. ...+.++||| | ||+.|..... ....+.+.+...- +. ...+.--+.
T Consensus 217 ~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~-~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~ 295 (420)
T 1j1b_A 217 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQ 295 (420)
T ss_dssp CSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCC
T ss_pred eeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCc
Confidence 00 1123478999 6 8888875321 1112222222111 00 001111111
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+....-. ..........+.+++.+|++.+|++||++.|+++
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 296 IKAHPWT-KVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp CCCCCHH-HHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCCCHH-HhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 1100000 0000111245778999999999999999999985
No 360
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.66 E-value=7.1e-18 Score=172.55 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=126.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh------hhhHHHHHHHHH----------------------hhhhhcCCC-
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA------FKSFDVACDMMK----------------------KLVLEYMPH- 456 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~------~~~f~~e~~~~~----------------------~Lv~ey~~~- 456 (639)
.++|.||++.. .++..+|+|.+....... ...+..|+..++ .+|+||+..
T Consensus 54 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 133 (320)
T 3a99_A 54 GGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPV 133 (320)
T ss_dssp SSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSE
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCC
Confidence 56899999975 568899999987543211 122333444332 257788875
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCCc--
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
++|.+++.. ...+++..+..++.++++||+||| ..+|+||||||+||+++ +++.+||+|||+++.........
T Consensus 134 ~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~ 209 (320)
T 3a99_A 134 QDLFDFITE-RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD 209 (320)
T ss_dssp EEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCC
T ss_pred ccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCC
Confidence 788888764 235889999999999999999999 56899999999999999 78999999999998765432210
Q ss_pred -c------c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 -T------Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 -~------~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ . ...+.+.||| | ||+.|.... .+.... ....
T Consensus 210 gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~-------~~~~~~------------~~~~-------- 262 (320)
T 3a99_A 210 GTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD-------EEIIRG------------QVFF-------- 262 (320)
T ss_dssp SCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHC------------CCCC--------
T ss_pred CCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh-------hhhhcc------------cccc--------
Confidence 0 0 0012356777 5 666665321 011110 0000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.||++
T Consensus 263 ~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 263 RQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011224667888999999999999999986
No 361
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.5e-16 Score=148.13 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=114.5
Q ss_pred CCCCcCccceecCCCC---------CcEEEEEeCCCCCcccCCc-CCCCCCCCCEEeccCCcCCccCCccccCCccccee
Q 041082 36 SSTVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPS-ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSI 105 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 105 (639)
..+.|.|..+.|+... .+++.|++++|.+++..+. .|+.+++|++|+|++|.|++..|..|.++++|+.|
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 3456889999997532 3788999999999887665 48999999999999999999999999999999999
Q ss_pred eccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 106 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
+|++|++.+..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|.++.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999999999999999999999999999999999999999999888874
No 362
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.66 E-value=3.8e-17 Score=172.06 Aligned_cols=208 Identities=22% Similarity=0.277 Sum_probs=128.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++....+..+|+|++...... ...|+.+++ .+|+||++++.+.
T Consensus 51 G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~ 126 (394)
T 4e7w_A 51 GSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYR 126 (394)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHH
T ss_pred CCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHH
Confidence 4689999999877777999987533211 123444422 2688898865333
Q ss_pred hccc--cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCC----c
Q 041082 461 KCLY--SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQS----F 533 (639)
Q Consensus 461 ~~l~--~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~----~ 533 (639)
...+ .....+++.....++.++++||+||| ..+|+||||||+||+++ .++.+||+|||+|+........ .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~ 203 (394)
T 4e7w_A 127 ASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYIC 203 (394)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCS
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCccccc
Confidence 2221 12346889999999999999999999 56899999999999999 7999999999999876433211 0
Q ss_pred c-----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC-cceeeecc--------cc
Q 041082 534 T-----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS-VMEVVDVN--------LL 583 (639)
Q Consensus 534 ~-----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~-~~~~~d~~--------l~ 583 (639)
+ ....+.++||| | +|+.|....- ....+.+.+...- +.. .....++. +.
T Consensus 204 t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~-~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 282 (394)
T 4e7w_A 204 SRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES-GIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIR 282 (394)
T ss_dssp CGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCC
T ss_pred CcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhcccccc
Confidence 0 01123478998 6 8888875321 1111222222111 000 00000110 00
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...- ...........+.+++.+|++.+|++|||+.|+++
T Consensus 283 ~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 283 PHPF-SKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp CCCH-HHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCcH-HHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0000 00000112345778999999999999999999985
No 363
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.3e-16 Score=144.01 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=99.9
Q ss_pred CCCCCEEeccCCcCC-ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 75 LSSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.++|++|+|++|.++ +.+|..+..+++|+.|++++|.+.+. ..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367888888888887 67787788888888888888887765 667888888888888888887777777777777777
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc---cccCCCCCCCEEEccCCCCCCC
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP---NTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+|++|.++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 101 ~Ls~N~l~~~~-----------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDIS-----------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSG-----------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcch-----------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777666431 11445666777777777777776655 4677777888888877776654
No 364
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.66 E-value=1.5e-16 Score=165.71 Aligned_cols=116 Identities=23% Similarity=0.301 Sum_probs=92.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|++.... ......+..|+..++ .+|+||++ |+|
T Consensus 38 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L 116 (364)
T 3qyz_A 38 GAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDL 116 (364)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEH
T ss_pred CCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCH
Confidence 568999999754 67899999986432 222345666666643 25677776 578
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.+++.. ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++....
T Consensus 117 ~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 180 (364)
T 3qyz_A 117 YKLLKT--QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP 180 (364)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence 777754 35899999999999999999999 56899999999999999999999999999987653
No 365
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.66 E-value=9.5e-17 Score=169.80 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=84.1
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhhhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+.... ....+..|+.+++. +|+||++ |+|.+
T Consensus 32 G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~ 108 (405)
T 3rgf_A 32 GTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWH 108 (405)
T ss_dssp ----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHH
T ss_pred cCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHH
Confidence 468999999875 46889999986432 22355666666432 5788886 47766
Q ss_pred cccc--------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccc
Q 041082 462 CLYS--------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 462 ~l~~--------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~ 528 (639)
.+.. ....+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~ 184 (405)
T 3rgf_A 109 IIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 184 (405)
T ss_dssp HHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCC
Confidence 6542 1124899999999999999999999 5679999999999999 6789999999999987643
No 366
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.66 E-value=1.2e-16 Score=166.14 Aligned_cols=213 Identities=19% Similarity=0.222 Sum_probs=127.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++... .|..+|||++...... ...+..++..+ ..+||||+++ +
T Consensus 34 G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~ 111 (360)
T 3e3p_A 34 GTFGTVQLGKEKSTGMSVAIKKVIQDPRF-RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-T 111 (360)
T ss_dssp -----CEEEEETTTCCEEEEEEEECCTTC-CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-B
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecCccc-cHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc-c
Confidence 468999999874 5889999988543221 22233333321 2368899986 4
Q ss_pred chhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCc-
Q 041082 459 LEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSF- 533 (639)
Q Consensus 459 L~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~- 533 (639)
+...+.. ....+++.....++.+++.|++|||. ...+|+||||||+||+++. ++.+||+|||+++.........
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~ 190 (360)
T 3e3p_A 112 LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVA 190 (360)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCS
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCccc
Confidence 4443322 34568889999999999999999993 2567999999999999997 8999999999998765432210
Q ss_pred ---c------c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC--cceeeeccccccc--
Q 041082 534 ---T------Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS--VMEVVDVNLLSME-- 586 (639)
Q Consensus 534 ---~------~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~d~~l~~~~-- 586 (639)
+ . ...+.++||| | ||+.|....- ....+..+++...... ....+++......
T Consensus 191 ~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (360)
T 3e3p_A 191 YICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN-SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLY 269 (360)
T ss_dssp TTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGG
T ss_pred ccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC-hHHHHHHHHHHcCCCCHHHHHhcccchhhcccc
Confidence 0 0 1124478999 6 8888875421 1112222222111100 0011111100000
Q ss_pred --------cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 --------DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 --------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.............+.+++.+|++.+|++|||+.||++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 270 NSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp CCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 0000001123456888999999999999999999985
No 367
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.65 E-value=1e-16 Score=167.05 Aligned_cols=209 Identities=21% Similarity=0.226 Sum_probs=118.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
.++|.||++.. ..|..||+|++.... ......+..|+..++. +|+||+ ++
T Consensus 40 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~ 118 (367)
T 2fst_X 40 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GA 118 (367)
T ss_dssp ---CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CE
T ss_pred cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CC
Confidence 46899999974 568899999986432 2223455566665432 456666 56
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+++.. ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+........
T Consensus 119 ~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~ 193 (367)
T 2fst_X 119 DLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATR 193 (367)
T ss_dssp ECC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC---------------CCC
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCc
Confidence 78777754 45899999999999999999999 568999999999999999999999999999875432211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc----ceeeec-------cccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVVDV-------NLLS 584 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~d~-------~l~~ 584 (639)
.+. ...+.++||| | ||+.|.... +.......+........ ..+-.. .+..
T Consensus 194 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 271 (367)
T 2fst_X 194 WYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ 271 (367)
T ss_dssp TTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCC
T ss_pred CccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCC
Confidence 000 1223478999 6 888887531 11111111111111100 000000 0000
Q ss_pred ccccc-ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 585 MEDKY-FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 585 ~~~~~-~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ..........+.++..+|++.+|++|||+.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 272 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp CCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00000 0000011234678889999999999999999985
No 368
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.65 E-value=5.8e-17 Score=169.32 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=127.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++... .|..+|+|++.... ......+..|+..++ .+|+||+. |
T Consensus 53 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~ 131 (371)
T 4exu_A 53 GAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-T 131 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-E
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-c
Confidence 568999999754 68999999986532 222345556665532 36777876 5
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+.+. ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 132 ~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~ 205 (371)
T 4exu_A 132 DLQKIMG---MEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 205 (371)
T ss_dssp EHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCC
T ss_pred cHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCc
Confidence 7766663 24899999999999999999999 568999999999999999999999999999866433211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC-Ccceeeec--------ccccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI-SVMEVVDV--------NLLSM 585 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~d~--------~l~~~ 585 (639)
.+. ...+.++||| | ||+.|....- ....+...+...- +. ...+.++. .+...
T Consensus 206 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T 4exu_A 206 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD-YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT 284 (371)
T ss_dssp TTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCC
T ss_pred cccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCC
Confidence 000 1223478998 6 8888875321 0001111111000 00 00000000 00000
Q ss_pred c-cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 E-DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~-~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .............+.+++.+|++.+|++|||+.|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 285 PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp CCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 0 0000000112346778999999999999999999985
No 369
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3e-16 Score=160.99 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=125.9
Q ss_pred CCCCCEEeccCCcCCccCCccccC-CcccceeeccCCcCC--CCCCccccCCCCCcEEecccccCccccCccccC-----
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFN-MSSLLSIYFNNNTLF--GEIPEELGNLAELETLWLQNNFLTGTIHSSIFN----- 146 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----- 146 (639)
+.+++.|.++++- ....-..+.. +++|+.|+|++|++. ...+.. ++.+..+.+..|.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhccccccc
Confidence 6678888887642 1111122223 667778888877776 222222 22244444444422 2234444
Q ss_pred ---CCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccC
Q 041082 147 ---LSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223 (639)
Q Consensus 147 ---l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (639)
+++|+.|+|.. .++ ..-+.+|.++++|+.+++++|.+..+.+.+|..+.++..+.+..
T Consensus 97 ~~g~~~L~~l~L~~-~i~------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCC------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-ccc------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666655 443 33345566677777777777777666666777666666555544
Q ss_pred CCC----CCCCCcchhhccccCCc---------chh-------hhccCccEEEeecCccccccchhh-cCCCCCCEEECC
Q 041082 224 NYL----TSSTPELSFLYSLSNCK---------YLE-------QSSQSLEVFSMFNCNISGGILEEI-SNLTNLTAIYLA 282 (639)
Q Consensus 224 N~l----~~~~~~~~~~~~l~~l~---------~l~-------~~~~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~L~Ls 282 (639)
+.. ...... .+..+..+. .+. ....++..+.+.++-. ......+ ..+++|+.++++
T Consensus 158 ~~~~~~~~~i~~~--~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 158 SDAYRFKNRWEHF--AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp THHHHTSTTTTTS--CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECT
T ss_pred hhhhhcccccccc--ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECC
Confidence 211 100000 000000000 000 0012223333322211 0001111 124455555555
Q ss_pred CCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCc-EEECCCCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 041082 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY-ELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI 361 (639)
Q Consensus 283 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 361 (639)
+|.++...+..|..+.+|+.+++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 55555444444555555555555544 4434444555555555 555544 44444445555555555555555555555
Q ss_pred chhhhhcCCCCcEEE
Q 041082 362 IPSTLWNLKDILYLN 376 (639)
Q Consensus 362 ~p~~~~~l~~L~~L~ 376 (639)
.+..|.++++|+.++
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 444555555554443
No 370
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.65 E-value=4.7e-17 Score=173.16 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=120.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.|+.....++..||||++..... ..+..|+.+++ .+|+||++ |+|.+++..
T Consensus 35 G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~ 110 (432)
T 3p23_A 35 GAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQ 110 (432)
T ss_dssp CGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHS
T ss_pred CcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHh
Confidence 457876656666789999999864332 22344454432 36889996 699998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-----CCcceeeccccccccccccCCC--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-----NNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-----~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
......+.....++.++++||+||| +.+|+||||||+||+++ +...+||+|||+|+........
T Consensus 111 ~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~ 187 (432)
T 3p23_A 111 KDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVP 187 (432)
T ss_dssp SSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CC
T ss_pred cCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccC
Confidence 5444555556789999999999999 56799999999999994 3346889999999876533210
Q ss_pred ------ccc-------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 533 ------FTQ-------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 533 ------~~~-------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
.+. ...+.++||| | | |+.|...... ............+...+
T Consensus 188 gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~------~~~~~~~~~~~~~~~~~--------- 252 (432)
T 3p23_A 188 GTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ------RQANILLGACSLDCLHP--------- 252 (432)
T ss_dssp SCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT------HHHHHHTTCCCCTTSCT---------
T ss_pred CCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH------HHHHHHhccCCccccCc---------
Confidence 000 0112256777 5 5 6665532110 11111111100011100
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....-..+.+++.+|++.+|++|||+.||++
T Consensus 253 ---~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 253 ---EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ---TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 1122334678899999999999999999983
No 371
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.9e-17 Score=168.67 Aligned_cols=186 Identities=22% Similarity=0.260 Sum_probs=125.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh------hhhhHHHHHHHHH------------------------hhhhhc-C
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER------AFKSFDVACDMMK------------------------KLVLEY-M 454 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~------~~~~f~~e~~~~~------------------------~Lv~ey-~ 454 (639)
.++|.||++.. .++..+|+|.+...... ....+..|+..++ .+|+|| +
T Consensus 42 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~ 121 (312)
T 2iwi_A 42 GGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPL 121 (312)
T ss_dssp ETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCS
T ss_pred CCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecC
Confidence 46889999975 46789999998644221 1112222332211 257788 7
Q ss_pred CCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCCc
Q 041082 455 PHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQSF 533 (639)
Q Consensus 455 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~~ 533 (639)
++++|.+++... ..+++..+..++.++++||+||| ..+|+|||||++||+++ .++.+||+|||+++.........
T Consensus 122 ~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~ 197 (312)
T 2iwi_A 122 PAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTD 197 (312)
T ss_dssp SEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCC
T ss_pred CCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccc
Confidence 889999988652 35899999999999999999999 55799999999999999 88999999999998765432210
Q ss_pred c--------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 T--------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 ~--------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. ....+.++||| | ||+.|.... .+... ....-
T Consensus 198 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~------------~~~~~------ 252 (312)
T 2iwi_A 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD-------QEILE------------AELHF------ 252 (312)
T ss_dssp CCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHH------------TCCCC------
T ss_pred cCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh-------HHHhh------------hccCC------
Confidence 0 00112257777 5 666665321 01111 00000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+......+.+++.+|++.+|++||++.|+++
T Consensus 253 --~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 253 --PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp --CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred --cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0111234667888999999999999999986
No 372
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.64 E-value=1.4e-16 Score=166.49 Aligned_cols=203 Identities=20% Similarity=0.179 Sum_probs=127.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|||++.... ......+..|+..++ .+|+||+++
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~- 114 (371)
T 2xrw_A 36 GAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA- 114 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-
T ss_pred cCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCCC-
Confidence 46889999975 468899999986432 222344556665532 367788864
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----c
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----F 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~ 533 (639)
+|.+.+.. .+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 115 ~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g 188 (371)
T 2xrw_A 115 NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 188 (371)
T ss_dssp EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---------------
T ss_pred CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCcee
Confidence 67666642 4889999999999999999999 568999999999999999999999999999876433111 0
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhh--CCCC-------------------
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL--LPIS------------------- 573 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~--~~~~------------------- 573 (639)
+ ....+.++||| | ||+.|.... .....|.... ....
T Consensus 189 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (371)
T 2xrw_A 189 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT----DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENR 264 (371)
T ss_dssp -CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSS
T ss_pred cCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhC
Confidence 0 01123478999 6 888887532 1111111110 0000
Q ss_pred -------cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 -------VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 -------~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+....... ..+........+.++..+|++.+|++|||+.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 265 PKYAGYSFEKLFPDVLFPA---DSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp CCCCCCCHHHHSCGGGSCC---SSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccccccchhhhcccccCcc---cccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000000000000 00111233567889999999999999999999986
No 373
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.1e-15 Score=141.85 Aligned_cols=132 Identities=23% Similarity=0.352 Sum_probs=94.9
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.+.|.|.++.|+. ++++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+.+..
T Consensus 4 ~C~C~~~~l~~~~------------~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEecC------------CCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 3557788887764 3343 2443333 57788888888887666666777888888888888887766
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCC
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIP 183 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p 183 (639)
+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.++.+. +++|+.|+|++|.+.+..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666778888888888888887766666777888888888888777642 5678888888888876554
No 374
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.5e-16 Score=177.75 Aligned_cols=199 Identities=24% Similarity=0.238 Sum_probs=127.1
Q ss_pred CCcCcceEEEec--CCceeeeEEechhh-hhhhhhHHHHHHHH-------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ--DGMKVAVKVFDLQY-ERAFKSFDVACDMM-------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g~~vavK~l~~~~-~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++... ++..|+||++.... ......+..|...+ ..+||||+++++
T Consensus 91 G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~ 170 (681)
T 2pzi_A 91 GGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQS 170 (681)
T ss_dssp ETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEE
T ss_pred CCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCc
Confidence 578999999875 58899999885432 22233455555542 258899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc--
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ-- 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~-- 535 (639)
|.+++.. .++|.++..|+.++++||+||| ..+|+||||||+||+++.+ .+||+|||+++........ .+.
T Consensus 171 L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y 243 (681)
T 2pzi_A 171 LKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGF 243 (681)
T ss_dssp CC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTT
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhcccCCccCCCccc
Confidence 9887754 6899999999999999999999 5679999999999999986 8999999999876543211 000
Q ss_pred -------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhcc
Q 041082 536 -------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECT 608 (639)
Q Consensus 536 -------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~ 608 (639)
...+.++||| +-|..+.+.+....+.. ....+ .+... .........+.+++.+|+
T Consensus 244 ~aPE~~~~~~~~~sDi~-----------slG~~l~~l~~g~~~~~-~~~~~-~~~~~-----~~~~~~~~~l~~li~~~l 305 (681)
T 2pzi_A 244 QAPEIVRTGPTVATDIY-----------TVGRTLAALTLDLPTRN-GRYVD-GLPED-----DPVLKTYDSYGRLLRRAI 305 (681)
T ss_dssp SCTTHHHHCSCHHHHHH-----------HHHHHHHHHHSCCCEET-TEECS-SCCTT-----CHHHHHCHHHHHHHHHHT
T ss_pred cCHHHHcCCCCCceehh-----------hhHHHHHHHHhCCCCCc-ccccc-ccccc-----ccccccCHHHHHHHhhhc
Confidence 0012245555 33333333322111100 00000 00000 001122345778899999
Q ss_pred CCCCCCCCC-HHHHHHHHHHhHH
Q 041082 609 AESPKQRIN-AKESVTRLLKIRD 630 (639)
Q Consensus 609 ~~~p~~RP~-m~~v~~~l~~~~~ 630 (639)
+.+|++||+ +.++.+.+..+..
T Consensus 306 ~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 306 DPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp CSSGGGSCSSHHHHHHHHHHHHH
T ss_pred cCChhhCCCHHHHHHHHHHHHHH
Confidence 999999995 6666677766643
No 375
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.8e-16 Score=140.47 Aligned_cols=128 Identities=23% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCEEeccCCcCC-ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 76 SSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..++.+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555555555555555544 4455556666666666666554555555555555555
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc---cccCCCCCCCEEEcc
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP---NTFGNLINLKRLNLY 222 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls 222 (639)
+++|.++++ ..+..+..+++|+.|++++|.+++..+ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555544431 012334445555555555555555444 345556666666554
No 376
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=138.65 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=73.7
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.+++++++++ .+|..+. ++|++|+|++|.++ .+|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566667776 4666554 57888888888887 677788888888888888888887777778888888888888888
Q ss_pred CccccCccccCCCCCCEEecCCCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
+++..|..|.++++|++|+|++|.|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 87766666666555555555544443
No 377
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=141.00 Aligned_cols=126 Identities=31% Similarity=0.376 Sum_probs=112.1
Q ss_pred CCCCCcCccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccccee
Q 041082 35 TSSTVCHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSI 105 (639)
Q Consensus 35 ~~~~~c~w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 105 (639)
+..+.|.|..+.|+.. ...++.|+|++|.++ .+|..|.++++|++|+|++|.|++..|..|.++++|+.|
T Consensus 5 P~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 5 PTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 3445677888888653 236899999999998 678899999999999999999998888899999999999
Q ss_pred eccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCC
Q 041082 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 106 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999999999999999999999999999877778889999999988888775
No 378
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9.5e-15 Score=135.41 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=108.2
Q ss_pred CCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 78 LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 78 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.+.+++++|.+. .+|..+. ++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478899999988 5665554 6899999999999887777889999999999999999877776777777776666666
Q ss_pred CCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 158 NNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 158 N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
|.|+ +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 86 N~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQ------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcc------------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6554 4555667788999999999999998877778889999999999999887544
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.5e-15 Score=135.78 Aligned_cols=132 Identities=23% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCCCEEECCCCCCC-ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEe
Q 041082 274 TNLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352 (639)
Q Consensus 274 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 352 (639)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44455555555555555555555543 4455555555555555555554555555555555555
Q ss_pred CCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCc---cccccccccccccccCCCCC
Q 041082 353 LDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLP---LEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 353 l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~ls~N~l~ 407 (639)
+++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555322 445555555555555555554433 34555555666666555543
No 380
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.56 E-value=3.2e-15 Score=153.88 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=65.3
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---------------
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--------------- 513 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--------------- 513 (639)
+||||+++|++.+.+.. ..+++.....|+.+++.||+|||+ ..+|+||||||+|||++.++
T Consensus 139 lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~ 214 (336)
T 2vuw_A 139 IVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTI 214 (336)
T ss_dssp EEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEE
T ss_pred EEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccc
Confidence 67899999977776643 457999999999999999999993 23699999999999999886
Q ss_pred -----ceeeccccccccccc
Q 041082 514 -----VAHLSDFGMAKLLLK 528 (639)
Q Consensus 514 -----~~~i~dfgla~~~~~ 528 (639)
.+||+|||+|+....
T Consensus 215 ~~~~~~vkL~DFG~a~~~~~ 234 (336)
T 2vuw_A 215 PSCGLQVSIIDYTLSRLERD 234 (336)
T ss_dssp ECTTEEEEECCCTTCBEEET
T ss_pred cCCCceEEEeeccccEecCC
Confidence 999999999987654
No 381
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=6.7e-15 Score=150.96 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=62.4
Q ss_pred hhcCCCCCCEEECCCCCCCccccccccCCcCCc-EEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 269 EISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ-LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 269 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
.|..+++|+.+++.+| ++...+.+|.++.+|+ .+.+.+ +++...+.+|.++++|+.+++++|.++.+.+.+|.++++
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 4556667777777776 6555566777788887 888876 666666778888888888888888888777888888888
Q ss_pred CCEEe
Q 041082 348 LRILS 352 (639)
Q Consensus 348 L~~L~ 352 (639)
|+.+.
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 88775
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=6.1e-15 Score=132.54 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=64.1
Q ss_pred CCCEEECCCCCCC-ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeC
Q 041082 275 NLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353 (639)
Q Consensus 275 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 353 (639)
+|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..++.+++|+.|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4445555555554 34444444555555555555555443 34445555555555555555444444444555555555
Q ss_pred CCCcCccc-chhhhhcCCCCcEEEcccCCCCCCCc---ccccccccccccccc
Q 041082 354 DSNKLISI-IPSTLWNLKDILYLNLSSNFFISPLP---LEIGNLKVLVGIDLS 402 (639)
Q Consensus 354 ~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~ls 402 (639)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555543 23445555555555555555554433 345555555555554
No 383
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.8e-14 Score=133.45 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=84.9
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 150 (639)
+.++++|++|++++|.++. +|. +..+. +|+.|++++|.+.+. ..|+.+++|++|+|++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556677777777777773 443 44444 777777777777664 567777777777777777776554555666666
Q ss_pred CEEecCCCCCCCCCCCCccEEEccCCccCccCCc--cccCCCCCcEEEcccCCCcccCcc----ccCCCCCCCEEEccCC
Q 041082 151 SDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPH--FIFNASKLSILELQKNSFFDLIPN----TFGNLINLKRLNLYDN 224 (639)
Q Consensus 151 ~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N 224 (639)
++|+|++|.|+. +|. .+..+++|+.|++++|.+... |. .+..+++|+.|++++|
T Consensus 91 ~~L~L~~N~i~~-------------------~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVE-------------------LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCC-------------------GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCc-------------------chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 666666666643 222 455566677777777766543 33 3666777777777766
Q ss_pred CC
Q 041082 225 YL 226 (639)
Q Consensus 225 ~l 226 (639)
..
T Consensus 151 ~~ 152 (176)
T 1a9n_A 151 KL 152 (176)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.5e-12 Score=136.58 Aligned_cols=252 Identities=12% Similarity=0.106 Sum_probs=123.2
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
+..++.+.+.+ .++..-+.+|.+. +|+.+.+..+ +.......|.+. +|+.+.|.. .++.+-+..|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566666643 3443444555553 5777776655 444445556663 577777764 55555556666666666666
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcch
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 234 (639)
|+.|.++. .....|. .++|+.+.+..+ +..+...+|.++++|+.+++..| ++.+.....
T Consensus 187 l~~n~l~~------------------I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 187 LSKTKITK------------------LPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CTTSCCSE------------------ECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred cCCCcceE------------------echhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 66655543 2222333 466777777633 55566667777777777777653 222211110
Q ss_pred hhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC-----ccccccccCCcCCcEEEccCCc
Q 041082 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN-----GSIPITLCKLQKLQLLSFVDNK 309 (639)
Q Consensus 235 ~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~ 309 (639)
.+ .+|+.+.+ .+++...-...|..+++|+.+.+.+|.+. ...+..|..+.+|+.+.+. +.
T Consensus 246 -----~~--------~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 246 -----RE--------SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp -----TT--------CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred -----cc--------CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 00 13334443 12222222334455555555555554433 1223344444444444444 22
Q ss_pred CCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcC
Q 041082 310 LEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNL 369 (639)
Q Consensus 310 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 369 (639)
+...-..+|.++++|+.+.+..| ++.+.+.+|.++ +|+.+++++|.+....+..|.++
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 33333344444444444444332 333334444444 44444444444444333333333
No 385
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.7e-13 Score=126.00 Aligned_cols=104 Identities=27% Similarity=0.275 Sum_probs=92.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++++++.++. +|..+. ++|++|+|++|.|++..|..|.++++|+.|+|++|++.+..|..|.++++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 56777788874 676664 899999999999999889999999999999999999998888889999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|++..+..|..+++|++|+|++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 998888789999999998888888764
No 386
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.2e-16 Score=149.46 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=91.8
Q ss_pred cEEEEEeCCCCCcccCCc------CCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCC
Q 041082 53 RVTTLNISGLSLTSTIPS------ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAEL 126 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 126 (639)
+++.++++.+.++|.+|. .|+.+++|++|+|++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344555555555555554 66667777777777777765 55 6667777777777777665 456666666677
Q ss_pred cEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCC-ccccCCCCCcEEEcccCCCccc
Q 041082 127 ETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP-HFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 127 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
++|+|++|++++ +| .+..+++|++|++++|.++. ..+ ..+..+++|+.|++++|.+.+.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~------------------~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN------------------WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC------------------HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc------------------hhHHHHHhcCCCCCEEEecCCccccc
Confidence 777777777765 23 45555555555555555443 211 3455666777777777776655
Q ss_pred Cccc----------cCCCCCCCEEEccCCCCC
Q 041082 206 IPNT----------FGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 206 ~p~~----------~~~l~~L~~L~Ls~N~l~ 227 (639)
.|.. +..+++|+.|+ +|.++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4432 56677777775 44444
No 387
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=2.5e-12 Score=134.83 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=184.9
Q ss_pred CCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCc
Q 041082 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHS 142 (639)
Q Consensus 63 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 142 (639)
+++..-+..|.+. +|+.+.+..| ++..-..+|.+ .+|+.+.+.. .+....+..|.++++|+.++|.+|+++.+...
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 3444445567775 7999999877 76566667777 4799999986 67767778899999999999999999866555
Q ss_pred cccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 143 SIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 143 ~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
.|. ..+|+.+.|..+ ++.+ .+++|+.+.+..| ++..-..+|.+ .+|+.+.+ .+.+..+.+.+|.++++|
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC
Confidence 555 689999999854 5442 2567777777764 44444455555 67888887 455666666777778888
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccC
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCK 296 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 296 (639)
+.+.+.+|.+.... ........|..+++|+.+.+. +.++......|.+
T Consensus 274 ~~l~l~~~~~~~~~-------------------------------~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 274 AEVTTYGSTFNDDP-------------------------------EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp CEEEEESSCCCCCT-------------------------------TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred CEEEeCCccccCCc-------------------------------ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence 88887776554110 001223467788889999998 4576666778889
Q ss_pred CcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCC-CCCEEeCCCCcC
Q 041082 297 LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT-SLRILSLDSNKL 358 (639)
Q Consensus 297 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l 358 (639)
+.+|+.+.+..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 999999999654 666667889999 999999999988877788888874 678888776654
No 388
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.48 E-value=1.5e-14 Score=158.67 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCceeeeEEechhh----------hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccccCC
Q 041082 419 DGMKVAVKVFDLQY----------ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 419 ~g~~vavK~l~~~~----------~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~~~ 467 (639)
-|..+++|++.... ......|..|++.++ +|||||+++|+|.+.+...
T Consensus 258 fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~- 336 (569)
T 4azs_A 258 FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAG- 336 (569)
T ss_dssp ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTT-
T ss_pred ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhC-
Confidence 36788999885431 233456888888754 3799999999999999753
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 468 YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 468 ~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
..++.. +|+.+|+.||+|+| ..+|+||||||.|||+++++.+||+|||+|+....+
T Consensus 337 ~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 337 EEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp CCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred CCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 345553 58999999999999 678999999999999999999999999999976544
No 389
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.4e-13 Score=125.37 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=93.8
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++.++ .+|..+. ++|++|+|++|.|++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56899999996 5777775 89999999999999988999999999999999999999877777899999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
+|++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9998777779999999998888888764
No 390
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.7e-13 Score=126.86 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=95.7
Q ss_pred hcCCCCCCEEECCCCCCCccccccccCC-cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCC
Q 041082 270 ISNLTNLTAIYLAGNKLNGSIPITLCKL-QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348 (639)
Q Consensus 270 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 348 (639)
+.++++|+.|++++|.++. +|. +..+ ++|+.|++++|++++. ..|..+++|+.|++++|.+++..|..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3456677888888888774 343 3344 3788888888888764 567778888888888888886655656778888
Q ss_pred CEEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCcc----ccccccccccccccCCCCC
Q 041082 349 RILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLPL----EIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 349 ~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~l~ls~N~l~ 407 (639)
++|++++|.+....+ ..+..+++|+.|++++|.+.. +|. .+..++.|+.||++.|.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888855332 267778888888888888764 444 3777888888888877653
No 391
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.6e-12 Score=117.93 Aligned_cols=107 Identities=31% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCC
Q 041082 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355 (639)
Q Consensus 276 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 355 (639)
.+.+++++|.++. +|..+ .++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456666666653 44443 25667777777777776677777777777777777777766666667777777777777
Q ss_pred CcCcccchhhhhcCCCCcEEEcccCCCCCC
Q 041082 356 NKLISIIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 356 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
|+++++.+..|..+++|++|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777776666677777777777777776543
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=4.9e-15 Score=140.07 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=101.3
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
..+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++ +| .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 377788888888888888876 56 7778888888888888887 466677777888888888888886 34 5777888
Q ss_pred CCEEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCccc----------cccccccccccccCCCCC
Q 041082 348 LRILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLPLE----------IGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 348 L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~----------~~~l~~L~~l~ls~N~l~ 407 (639)
|++|++++|++.+..+ ..+..+++|++|++++|++.+.+|.. +..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888877544 56778888888888888887665542 66777777776 45443
No 393
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.6e-12 Score=134.23 Aligned_cols=109 Identities=21% Similarity=0.178 Sum_probs=93.9
Q ss_pred CcCccceecCCCCCcEEEEEeCCC-CCcccCCcCCCCCCCCCEEeccC-CcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGL-SLTSTIPSELGNLSSLQTLDLSF-NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.|.|..|.|+ ++ +|++ +|. |+.+++|++|+|++ |.|++..|..|.++++|+.|+|++|+|.+..
T Consensus 7 ~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 4777777665 34 5664 787 99999999999996 9999888899999999999999999999999
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|..|.+|++|+.|+|++|+|++..+..|..++ |+.|+|.+|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999999999999977666666665 8888888888763
No 394
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.36 E-value=5.9e-13 Score=132.92 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh------------------hhhhhHHHHHHHHH----------------hhhhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE------------------RAFKSFDVACDMMK----------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~------------------~~~~~f~~e~~~~~----------------~Lv~e 452 (639)
+++|.||++...+|..+|+|.+..... .....+..|...++ .+|||
T Consensus 101 G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~~~~~~~~~lvmE 180 (282)
T 1zar_A 101 GKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLME 180 (282)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEE
T ss_pred CCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCeEEeccceEEEEE
Confidence 468899999987789999999864321 12234556666543 36899
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
|+++|+|.+ +.. .....++.++++||+||| ..+|+||||||.||+++ ++.+||+|||+|+..
T Consensus 181 ~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 181 LIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV 242 (282)
T ss_dssp CCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred ecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEEECCCCeEC
Confidence 999999988 432 123469999999999999 67899999999999999 999999999999854
No 395
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=5.3e-12 Score=116.29 Aligned_cols=105 Identities=28% Similarity=0.289 Sum_probs=72.4
Q ss_pred CEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCC
Q 041082 277 TAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356 (639)
Q Consensus 277 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 356 (639)
+.+++++|.++ .+|..+. ++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 4454443 56777777777777766777777777777777777777666666677777777777777
Q ss_pred cCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 357 KLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 357 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
++.++.+..|..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7777666667777777777777777654
No 396
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=2.2e-10 Score=120.28 Aligned_cols=307 Identities=13% Similarity=0.020 Sum_probs=142.0
Q ss_pred CcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCC
Q 041082 69 PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS 148 (639)
Q Consensus 69 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 148 (639)
..+|.++++|+.+.|..+ ++..-..+|.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +.......|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 345666666776666533 44344455666666666666543 33333445666666666555433 2223333344433
Q ss_pred CCCEEecCCCCCCC----CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCC
Q 041082 149 SLSDLDLSHNNLTD----VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224 (639)
Q Consensus 149 ~L~~L~Ls~N~l~~----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (639)
.+..........-+ ....+|+.+.+..+. .......|.++.+|+.+.+..| +..+...+|.++..|+.+.+..+
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 22222111111000 013445555554332 2233344555566666666544 33344445556666665555443
Q ss_pred CCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEE
Q 041082 225 YLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLS 304 (639)
Q Consensus 225 ~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 304 (639)
..... .. . .....++.+.+... +...-...+..+..++.+.+..+... .....|..+..++.+.
T Consensus 219 ~~~i~-~~---~----------~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 219 LYYLG-DF---A----------LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CCEEC-TT---T----------TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEE
T ss_pred ceEee-hh---h----------cccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceec
Confidence 22100 00 0 00112333333211 11111223445555666655554322 2334445555555555
Q ss_pred ccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 305 FVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 305 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
...+.+ ...+|..+.+|+.+.+..+ ++.+...+|.++++|+.+++.. .++.+....|.++.+|+.+.+..| +..
T Consensus 283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 544332 1234555566666665443 4434455566666666666643 244444555666666666666544 333
Q ss_pred CCcccccccccccccccc
Q 041082 385 PLPLEIGNLKVLVGIDLS 402 (639)
Q Consensus 385 ~~p~~~~~l~~L~~l~ls 402 (639)
.-..+|.++.+|+.+++.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 334455555555555554
No 397
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=4.9e-10 Score=117.59 Aligned_cols=317 Identities=15% Similarity=0.066 Sum_probs=203.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.+.|+. +++..-..+|.++++|+.++|..+ ++..-...|.++.+|+.+.+..+ +.......|.+...++....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 3689999985 476555678999999999999765 55455677889999998887654 44444555666654443333
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCC--C---CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLT--D---VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 206 (639)
... ...-..+|.++++|+.+.+..+..+ . ...++|+.+.+..| +.......|.++..|+.+.+..+... +
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred ccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--e
Confidence 222 2233456777888888887654321 1 12456777777655 44444566777778887777665432 1
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC
Q 041082 207 PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286 (639)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 286 (639)
.+.+.....|+.+.+..+. +..... ...+ ...++.+.+..+.. ......+..+..++.+....+.+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~~i~~~-----~f~~-------~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-TELGKS-----VFYG-------CTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-CEECSS-----TTTT-------CSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred ehhhcccCCCceEEECCCc-eecccc-----cccc-------cccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 2233345677777765331 111110 0111 12444555543322 22234566777788777766543
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 366 (639)
. ...|..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++.+-..+|.++++|+.+.+..| ++.+....|
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred c---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2 345777888998888654 55555678999999999999754 66667789999999999999776 777778889
Q ss_pred hcCCCCcEEEcccCCCCCCCcccccccccccc
Q 041082 367 WNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398 (639)
Q Consensus 367 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 398 (639)
.++.+|+.+++..+- ..+...+.+..+|+.
T Consensus 363 ~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 363 QGCINLKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred hCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence 999999999987652 223455666666654
No 398
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.20 E-value=8e-12 Score=123.08 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=79.0
Q ss_pred CCcCcceEEEe-cCCce--eeeEEechhhhh------------------------hhhhHHHHHHHHH------------
Q 041082 407 SGFGSIYKARI-QDGMK--VAVKVFDLQYER------------------------AFKSFDVACDMMK------------ 447 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~--vavK~l~~~~~~------------------------~~~~f~~e~~~~~------------ 447 (639)
.++|.||++.. .+|.. +|||++...... ....+..|...++
T Consensus 58 G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~ 137 (258)
T 1zth_A 58 GKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQP 137 (258)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 45889999987 67888 999986433111 0013444544432
Q ss_pred ------hhhhhcCC-CC----CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 448 ------KLVLEYMP-HG----SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 448 ------~Lv~ey~~-~g----sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+||||+. +| +|.+.... .++.....++.+++.|++|||. ..+|+||||||.|||++. .++
T Consensus 138 ~~~~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NILl~~--~~~ 209 (258)
T 1zth_A 138 YTYMKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNIMYID--KVY 209 (258)
T ss_dssp EEEETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSEEESS--SEE
T ss_pred EEcCCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHEEEcC--cEE
Confidence 26889995 25 44333221 2244567899999999999994 346999999999999998 999
Q ss_pred eccccccccc
Q 041082 517 LSDFGMAKLL 526 (639)
Q Consensus 517 i~dfgla~~~ 526 (639)
|+|||+|...
T Consensus 210 liDFG~a~~~ 219 (258)
T 1zth_A 210 FIDMGQAVTL 219 (258)
T ss_dssp ECCCTTCEET
T ss_pred EEECcccccC
Confidence 9999999865
No 399
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=9.1e-13 Score=136.83 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCCCEEeccCCcCCccCCccccCC-----cccceeeccCCcCCCCCCccc-cCCCCCcEEecccccCccccCccc-----
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNM-----SSLLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSI----- 144 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~----- 144 (639)
++|++|+|++|.++......+... ++|+.|+|++|.+.......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345566666666553322222221 455555555555543222222 233455556666665543322222
Q ss_pred cCCCCCCEEecCCCCCC
Q 041082 145 FNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 145 ~~l~~L~~L~Ls~N~l~ 161 (639)
...++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 12344555555555544
No 400
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.19 E-value=1.1e-11 Score=135.31 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=83.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--------hhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--------RAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .+..+++|....... ...+.+..|++.++ .+||||+++|+
T Consensus 347 G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggs 425 (540)
T 3en9_A 347 GAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKL 425 (540)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEE
T ss_pred CCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCC
Confidence 45889999954 467788887533211 11234566666643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|.+++.. +..|+.++++||+||| ..+|+||||||+||+++. .+||+|||+|+....
T Consensus 426 L~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 426 AKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp HHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 9998864 5689999999999999 667999999999999999 999999999997643
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=7.8e-11 Score=121.45 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=57.1
Q ss_pred EEeccCC-cCCccCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 80 TLDLSFN-WFSGSIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 80 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..|..|++|++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4677 77777788888875 777777777777777777777777777777777777766666666555
Q ss_pred CCCC
Q 041082 158 NNLT 161 (639)
Q Consensus 158 N~l~ 161 (639)
|.|+
T Consensus 90 N~l~ 93 (347)
T 2ifg_A 90 NALE 93 (347)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 5554
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=4.3e-12 Score=131.74 Aligned_cols=162 Identities=20% Similarity=0.122 Sum_probs=92.2
Q ss_pred cCccEEEeecCccccccchhhcC-----CCCCCEEECCCCCCCccccccc-cCCcCCcEEEccCCcCCCCCchhh-----
Q 041082 250 QSLEVFSMFNCNISGGILEEISN-----LTNLTAIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGPIPYEF----- 318 (639)
Q Consensus 250 ~~l~~l~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~----- 318 (639)
..++.+++++|.++......+.. .++|+.|+|++|.++......+ ..+++|+.|++++|+++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554332222221 2466677777776653322222 234566777777776654333332
Q ss_pred cCCCCCcEEECCCCcCccc----CCccccCCCCCCEEeCCCCcCcccc----hhhhhcCCCCcEEEcccCCCCCC----C
Q 041082 319 CRLASLYELDLSGNKLSGS----IPTCFGNQTSLRILSLDSNKLISII----PSTLWNLKDILYLNLSSNFFISP----L 386 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~----~ 386 (639)
...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+.... +..+...+.|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345677777777776542 2333455667777777777776432 44455666777777777776542 2
Q ss_pred ccccccccccccccccCCCCCCcCc
Q 041082 387 PLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 387 p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+..+...+.|+.|||++|+|+..|.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 3334455677778888887765443
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=1.2e-08 Score=106.87 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=163.9
Q ss_pred cCCCCCC-CCCEEeccCCcCCccCCccccCCcccceeeccCCc---CCCCCCccccCCCCCcEEecccccCccccCcccc
Q 041082 70 SELGNLS-SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT---LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145 (639)
Q Consensus 70 ~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 145 (639)
.+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-...|.++.+|+.+.+..+ ++.+....|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4666666433 443444556666666666665542 33333445666666666655443 3334444566
Q ss_pred CCCCCCEEecCCCCC--CC---CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEE
Q 041082 146 NLSSLSDLDLSHNNL--TD---VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLN 220 (639)
Q Consensus 146 ~l~~L~~L~Ls~N~l--~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 220 (639)
++.+|+.+.+..+-. .. .....|+.+.+..+ +...-...| ...+|+.+.+..+- ......+|..+..++...
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccceeeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcc-cccccchhhhccccceec
Confidence 666666666643211 11 11345555555433 222222233 33567777765442 233445677777777776
Q ss_pred ccCCCCCCCCCcchhhccccCC-cchh--hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCC
Q 041082 221 LYDNYLTSSTPELSFLYSLSNC-KYLE--QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKL 297 (639)
Q Consensus 221 Ls~N~l~~~~~~~~~~~~l~~l-~~l~--~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 297 (639)
...+......... ....... ..+. .....+..+.+. +.+...-...|..+..|+.+.+..+... .....|..+
T Consensus 212 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 212 SDSESYPAIDNVL--YEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp ECCSSSCBSSSCE--EEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred cccccccccccee--ecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 6554433221100 0000000 0000 000112222221 1112222345666777888877655332 344567777
Q ss_pred cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEc
Q 041082 298 QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL 377 (639)
Q Consensus 298 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 377 (639)
..|+.+.+. +.+......+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+-...|.++.+|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 788888775 4455455667888888888888654 55556677888888888888543 66666777888888888887
Q ss_pred ccCCCCCCCccccccccccccccccCC
Q 041082 378 SSNFFISPLPLEIGNLKVLVGIDLSMN 404 (639)
Q Consensus 378 s~N~l~~~~p~~~~~l~~L~~l~ls~N 404 (639)
.+|... -..+.....|+.+.+..|
T Consensus 365 ~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 365 SGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SSCHHH---HHTCBCCCCC--------
T ss_pred CCceee---hhhhhccCCCCEEEeCCC
Confidence 776421 123444455555555444
No 404
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.94 E-value=6.5e-08 Score=101.34 Aligned_cols=291 Identities=12% Similarity=0.128 Sum_probs=188.8
Q ss_pred CCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEeccccc---CccccCccccCCCCCCEEecCCCCCCC-----
Q 041082 92 IPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF---LTGTIHSSIFNLSSLSDLDLSHNNLTD----- 162 (639)
Q Consensus 92 ~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~----- 162 (639)
-..+|.+.. .|+.+.+..+ ++..-...|.++.+|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++.
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345677774 5999999754 666667789999999999998874 66555678889999998887654 222
Q ss_pred -CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC
Q 041082 163 -VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN 241 (639)
Q Consensus 163 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 241 (639)
....+|+.+.+..+ +.......|..+.+|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. ... ....+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~-----~af~~ 203 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGT-----NAFSE 203 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECT-----TTTTT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-ccc-----chhhh
Confidence 12567788877643 33344556777888888888654 44444555654 56777777544221 100 01111
Q ss_pred CcchhhhccCccEEEeecCccc-------------cccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCC
Q 041082 242 CKYLEQSSQSLEVFSMFNCNIS-------------GGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308 (639)
Q Consensus 242 l~~l~~~~~~l~~l~l~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 308 (639)
|. .+........... ......+.....+..+.+.. .++..-...|..+..|+.+.+..+
T Consensus 204 c~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 204 CF-------ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CT-------TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred cc-------ccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 21 1222211111110 00000111222344444332 223233456788899999988755
Q ss_pred cCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcc
Q 041082 309 KLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPL 388 (639)
Q Consensus 309 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 388 (639)
.. ..-..+|.+++.|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++..-..
T Consensus 276 ~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 43 3456788999999999996 4566677789999999999999754 77777788999999999999755 5555567
Q ss_pred ccccccccccccccCCC
Q 041082 389 EIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 389 ~~~~l~~L~~l~ls~N~ 405 (639)
+|.++.+|+.+++.++.
T Consensus 352 aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECCce
Confidence 89999999999988764
No 405
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=5.1e-10 Score=115.19 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=95.3
Q ss_pred CcEEEEEeCCCCCcc-c-------CCcCCCCCCCCCEEeccCCcCC---------ccCCccccCCcccceeeccCCcCCC
Q 041082 52 YRVTTLNISGLSLTS-T-------IPSELGNLSSLQTLDLSFNWFS---------GSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~-~-------~p~~l~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
.+|+.|.+....+.| . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467777777555442 1 1223456778888888654321 123333445566666666655211
Q ss_pred CCCccccCCCCCcEEecccccCccccCcccc--CCCCCCEEecCCCCCCCCCCCCccEEEccCCccCcc-----CCccc-
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF--NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGA-----IPHFI- 186 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~-----~p~~~- 186 (639)
.+|. +. +++|+.|+|..|.+....-..+. .+++|++|+|+.+ .|...+. +...+
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~----------------~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG----------------VEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECB----------------CGGGTCCSCGGGTGGGSC
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecc----------------ccccccchhHHHHHHHHh
Confidence 1222 22 55666666665555432222222 4555555555321 0111000 00111
Q ss_pred -cCCCCCcEEEcccCCCcccCcccc---CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcc
Q 041082 187 -FNASKLSILELQKNSFFDLIPNTF---GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262 (639)
Q Consensus 187 -~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l 262 (639)
..+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.++..... .....+ ....+|+.|+++.|.+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~-~L~~~L-------~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR-LLLDHV-------DKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH-HHHTTH-------HHHTTCSEEECCSBBC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH-HHHhhc-------ccCCcceEEECCCCcC
Confidence 134566666666666543222212 2356677777766665532100 000000 1123566677777766
Q ss_pred ccccchhhcC-CCCCCEEECCCCC
Q 041082 263 SGGILEEISN-LTNLTAIYLAGNK 285 (639)
Q Consensus 263 ~~~~~~~~~~-l~~L~~L~Ls~N~ 285 (639)
+......+.. + ...++++.+.
T Consensus 320 ~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHC--CSEEECCSBC
T ss_pred CHHHHHHHHHHc--CCEEEecCCc
Confidence 6544333332 2 2446666654
No 406
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.84 E-value=2.7e-11 Score=118.38 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCcCccceecCCCCCcEEEEEeCCC---CCcccCC-cCCCCCCCCCEEeccCCcCCccCCc-cccCCcccce--eeccCC
Q 041082 38 TVCHWTGVSCDVRSYRVTTLNISGL---SLTSTIP-SELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLS--IYFNNN 110 (639)
Q Consensus 38 ~~c~w~gv~c~~~~~~v~~L~L~~~---~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~--L~L~~N 110 (639)
..|.|.|+.|+..+.+|..+...+. .+.+.++ ..+..++. .|...+|..++.++- .|...+.|.. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 4788999999976667766655542 2223332 11211111 222233333332221 2445555655 666777
Q ss_pred cC---CCCCCccccCCCCCcEEecccccCcc--ccCccccCCCCCCEEecCCCCCCCC
Q 041082 111 TL---FGEIPEELGNLAELETLWLQNNFLTG--TIHSSIFNLSSLSDLDLSHNNLTDV 163 (639)
Q Consensus 111 ~l---~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ 163 (639)
.. .+.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.|+++
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 42 22222223467888888888888887 4456667788888888888877764
No 407
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=98.72 E-value=1.1e-08 Score=105.03 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh------------h--hhhH--------HHHHHHHH-----------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER------------A--FKSF--------DVACDMMK----------------- 447 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~------------~--~~~f--------~~e~~~~~----------------- 447 (639)
.+++.||++.-++|..+|||++...... . .... ..|...+.
T Consensus 106 Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~p~~~~~ 185 (397)
T 4gyi_A 106 GKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSR 185 (397)
T ss_dssp CSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCEEEEET
T ss_pred CCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeccC
Confidence 4588999999889999999987543110 0 0000 11121111
Q ss_pred -hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----------cee
Q 041082 448 -KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----------VAH 516 (639)
Q Consensus 448 -~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----------~~~ 516 (639)
.+||||++++.+..+.... + ..+++.+++.++.||| ..+||||||||.|||+++++ .+.
T Consensus 186 ~~LVME~i~G~~L~~l~~~~----~---~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~ 255 (397)
T 4gyi_A 186 HTIVMSLVDALPMRQVSSVP----D---PASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKDAEDPSSITLTPI 255 (397)
T ss_dssp TEEEEECCSCEEGGGCCCCS----C---HHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEECSSCTTSEEEEEE
T ss_pred ceEEEEecCCccHhhhcccH----H---HHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCCcccccccccceE
Confidence 2789999988887654321 1 2457889999999999 55799999999999998776 388
Q ss_pred ecccccccc
Q 041082 517 LSDFGMAKL 525 (639)
Q Consensus 517 i~dfgla~~ 525 (639)
|.||+-+..
T Consensus 256 iID~~Q~V~ 264 (397)
T 4gyi_A 256 IIXFPQMVS 264 (397)
T ss_dssp ECCCTTCEE
T ss_pred EEEeCCccc
Confidence 999987654
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.7e-08 Score=102.26 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred CccEEEeecCccccccchhh---cCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcCC
Q 041082 251 SLEVFSMFNCNISGGILEEI---SNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 251 ~l~~l~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+|+.|.+.+|.+.+.....+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44455555444443222222 2345566666666655432 1222233455555555555444
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=5e-06 Score=86.36 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=61.4
Q ss_pred cCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCE
Q 041082 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 350 (639)
....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +......+|.++++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 33444555544433 22222334445555555555433 33333345555555555555432 33334445555555555
Q ss_pred EeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccccccccc
Q 041082 351 LSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402 (639)
Q Consensus 351 L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls 402 (639)
+.+.++.++.+....|.++.+|+.+.+..+ +...-..+|.++.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555555555555555555555555433 222223445555555555543
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.48 E-value=1.3e-05 Score=83.13 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=80.5
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
..+..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 44566777888777655 44444566777788888887543 44445567888888888888888887777788888888
Q ss_pred CCEEeCCCCcCcccchhhhhcCCCCcEEEcccC
Q 041082 348 LRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380 (639)
Q Consensus 348 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 380 (639)
|+.+.+..+ ++.+-...|.++.+|+.+.+..+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888888644 66666778888888888877544
No 411
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=4.6e-08 Score=90.67 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCCCCCCCCEEeccCC-cCCcc----CCccccCCcccceeeccCCcCCCC----CCccccCCCCCcEEecccccCccc--
Q 041082 71 ELGNLSSLQTLDLSFN-WFSGS----IPSSIFNMSSLLSIYFNNNTLFGE----IPEELGNLAELETLWLQNNFLTGT-- 139 (639)
Q Consensus 71 ~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-- 139 (639)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4455666777777776 66431 233344455666666666665432 223333445666666666666532
Q ss_pred --cCccccCCCCCCEEec--CCCCCCC
Q 041082 140 --IHSSIFNLSSLSDLDL--SHNNLTD 162 (639)
Q Consensus 140 --~p~~~~~l~~L~~L~L--s~N~l~~ 162 (639)
+...+...++|++|+| ++|.|+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2334445555666666 5555543
No 412
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=2.9e-07 Score=89.71 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCcccceeeccCCcCCC--CCCccccCCCCCcEEecccccCccccCccccCCC--CCCEEecCCCCCC
Q 041082 98 NMSSLLSIYFNNNTLFG--EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS--SLSDLDLSHNNLT 161 (639)
Q Consensus 98 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~ 161 (639)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 34445555555555544 2334444455555555555555433 1122222 4555555555544
No 413
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=1.1e-06 Score=81.38 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=60.6
Q ss_pred hhhcCCCCCCEEECCCC-CCCcc----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCccc-
Q 041082 268 EEISNLTNLTAIYLAGN-KLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGS- 337 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 337 (639)
..+...+.|+.|+|++| .+... +...+...+.|++|+|++|++... +...+...++|+.|+|++|.++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777777 66532 223344456666677766666432 222334445666666666666532
Q ss_pred ---CCccccCCCCCCEEeC--CCCcCcccc----hhhhhcCCCCcEEEcccCCC
Q 041082 338 ---IPTCFGNQTSLRILSL--DSNKLISII----PSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 338 ---~p~~~~~l~~L~~L~l--~~N~l~~~~----p~~~~~l~~L~~L~ls~N~l 382 (639)
+...+...++|++|++ ++|.+.... ...+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444556666666 556655432 22233344555555555543
No 414
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.69 E-value=4.8e-05 Score=74.35 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=74.3
Q ss_pred CcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh---------------------hhhhcCCCCCchhccccCCc
Q 041082 410 GSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK---------------------LVLEYMPHGSLEKCLYSSNY 468 (639)
Q Consensus 410 g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~~l~~~~~ 468 (639)
..||+.... +..+++|............+..|...++. +||||+++.++.+.+..
T Consensus 28 ~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~--- 103 (263)
T 3tm0_A 28 AKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED--- 103 (263)
T ss_dssp SEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT---
T ss_pred CeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccCC---
Confidence 447777644 67899998865332223456666655432 56788887777654311
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhcc--------------------------------------------------------
Q 041082 469 ILDIFQRLNIMIDVALALEYLHFG-------------------------------------------------------- 492 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~~lh~~-------------------------------------------------------- 492 (639)
......++.+++++++.||..
T Consensus 104 ---~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 180 (263)
T 3tm0_A 104 ---EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPE 180 (263)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCC
T ss_pred ---cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCC
Confidence 122346888899999999961
Q ss_pred CCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 493 ~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
..+.++|+|+++.||+++++..+.|.||+.+..
T Consensus 181 ~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 181 EELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp CCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred CCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 114589999999999998776677999988753
No 415
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=97.56 E-value=9.3e-05 Score=72.02 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=69.5
Q ss_pred CcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhccccCC
Q 041082 410 GSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 410 g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~l~~~~ 467 (639)
+.+|+....+|..+++|..... ....+..|...++ .+||||+++.++. ...
T Consensus 34 ~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~-- 106 (264)
T 1nd4_A 34 AAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH-- 106 (264)
T ss_dssp CEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TSC--
T ss_pred ceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cCc--
Confidence 5688887777778899986533 1234445554432 2566777766663 111
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhccC------------------------------------------------------
Q 041082 468 YILDIFQRLNIMIDVALALEYLHFGY------------------------------------------------------ 493 (639)
Q Consensus 468 ~~l~~~~~~~i~~~ia~~l~~lh~~~------------------------------------------------------ 493 (639)
.+ +..++.++++.++.||...
T Consensus 107 --~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (264)
T 1nd4_A 107 --LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDG 181 (264)
T ss_dssp --CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSS
T ss_pred --CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCC
Confidence 11 2356777888888888421
Q ss_pred -CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 -STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 -~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+++.||+++++..+.|.|||.+..
T Consensus 182 ~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 182 EDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998887778999998764
No 416
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=5e-05 Score=68.58 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=33.2
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCc-CCCCCCccccCC----CCCcEEeccccc-CccccCccccCCCCC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT-LFGEIPEELGNL----AELETLWLQNNF-LTGTIHSSIFNLSSL 150 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L 150 (639)
.|+.|||+++.++..--..+..+++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..-=..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444432222233344444444444442 222111223332 245555555543 432211234445555
Q ss_pred CEEecCCC
Q 041082 151 SDLDLSHN 158 (639)
Q Consensus 151 ~~L~Ls~N 158 (639)
++|+|++.
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555443
No 417
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.27 E-value=0.00011 Score=66.36 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCc-CCccCCccccCC----cccceeeccCCc-CCCCCCccccCCC
Q 041082 51 SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNW-FSGSIPSSIFNM----SSLLSIYFNNNT-LFGEIPEELGNLA 124 (639)
Q Consensus 51 ~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~ 124 (639)
..+++.||++++.++..--..+.++++|++|+|++|. ++..-=..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3689999999999875433457899999999999995 654322345554 479999999985 6654445678899
Q ss_pred CCcEEeccccc
Q 041082 125 ELETLWLQNNF 135 (639)
Q Consensus 125 ~L~~L~L~~N~ 135 (639)
+|+.|+|+++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999986
No 418
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=97.13 E-value=0.001 Score=68.22 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=73.6
Q ss_pred cCcceEEEecCCceeeeEEec--hhh-hhhhhhHHHHHHHHHh-------------------------hhhhcCCCCCch
Q 041082 409 FGSIYKARIQDGMKVAVKVFD--LQY-ERAFKSFDVACDMMKK-------------------------LVLEYMPHGSLE 460 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~--~~~-~~~~~~f~~e~~~~~~-------------------------Lv~ey~~~gsL~ 460 (639)
...+|+....+ ..+.+|+.. ... ......+..|...++. +||||+++..+.
T Consensus 51 sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~ 129 (359)
T 3dxp_A 51 SNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLW 129 (359)
T ss_dssp CSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCC
T ss_pred cceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecC
Confidence 34577776654 466677654 221 1112345555555332 467777776654
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----------------------------------------------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY----------------------------------------------- 493 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~----------------------------------------------- 493 (639)
+.. ...++..++..++.++++.|+.||..-
T Consensus 130 ~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (359)
T 3dxp_A 130 DQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQ 206 (359)
T ss_dssp CTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGG
T ss_pred CCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHh
Confidence 311 123678888999999999999999520
Q ss_pred --------CCCeEeecCCCCceeecCCcc--eeecccccccc
Q 041082 494 --------STPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKL 525 (639)
Q Consensus 494 --------~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~ 525 (639)
.+.++|||+++.||+++.+.. +.|.||+.+..
T Consensus 207 ~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 207 HIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred cCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997653 58999998864
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0031 Score=54.04 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred EEEeCCCCCc-ccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCC
Q 041082 56 TLNISGLSLT-STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110 (639)
Q Consensus 56 ~L~L~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 110 (639)
.++.++++++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3455555654 23454333 24566666666665433333444444444444444
No 420
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0038 Score=53.45 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=20.3
Q ss_pred CCcEEecccccCccccCccccCCCCCCEEecCCCCC
Q 041082 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNL 160 (639)
Q Consensus 125 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 160 (639)
+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455666666666555445555555555555555544
No 421
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.13 E-value=0.0027 Score=58.31 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=6.9
Q ss_pred CCCCCCEEEccCC
Q 041082 212 NLINLKRLNLYDN 224 (639)
Q Consensus 212 ~l~~L~~L~Ls~N 224 (639)
.-+.|+.|+++.|
T Consensus 155 ~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 155 ENESLLRVGISFA 167 (197)
T ss_dssp HCSSCCEEECCCC
T ss_pred hCCCcCeEeccCC
Confidence 3455566666544
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.92 E-value=0.009 Score=54.83 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=31.3
Q ss_pred cCCCCCCEEECCCC-CCCcc----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCc
Q 041082 271 SNLTNLTAIYLAGN-KLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLS 335 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 335 (639)
.+-+.|+.|+|++| .|... +...+..-..|+.|+|++|++... +...+..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666664 54321 122333344555666666555421 2223333345555565555554
No 423
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=95.75 E-value=0.0051 Score=61.27 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCCeEeecCCCCceeecC--Ccceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~ 525 (639)
.+.++|+|+++.||++++ ...+.|.||+.+..
T Consensus 190 ~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~ 223 (304)
T 3sg8_A 190 YPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI 223 (304)
T ss_dssp CCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred CceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence 457899999999999998 56678999998764
No 424
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=94.74 E-value=0.023 Score=56.98 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.9
Q ss_pred CCeEeecCCCCceeecCCcceeecccccccc
Q 041082 495 TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 495 ~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+.++|+|+++.||+++++..+.|.||+.+..
T Consensus 207 ~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 207 PCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp CEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred ceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 4569999999999999977779999998864
No 425
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=94.24 E-value=0.13 Score=50.45 Aligned_cols=114 Identities=19% Similarity=0.108 Sum_probs=69.2
Q ss_pred cCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh--------
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK-------- 461 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~-------- 461 (639)
++.+|+....+|..++||+...........|..|...++ .+||||++++++..
T Consensus 28 ~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~~~~lvme~l~g~~~~~~~~~~lg~ 107 (288)
T 3d1u_A 28 RWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWDDRTLAMEWVDERPPTPEAAERFGH 107 (288)
T ss_dssp TEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEETTEEEEECCCCCCCCHHHHHHHHH
T ss_pred hhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEecCcEEEEEecccCCCChHHHHHHHH
Confidence 457899988889999999865433323356677776643 36899999887531
Q ss_pred ---ccccCC-c-------------------cCCHHH-----HHHHH---------------HHHHHhhhhhh----ccCC
Q 041082 462 ---CLYSSN-Y-------------------ILDIFQ-----RLNIM---------------IDVALALEYLH----FGYS 494 (639)
Q Consensus 462 ---~l~~~~-~-------------------~l~~~~-----~~~i~---------------~~ia~~l~~lh----~~~~ 494 (639)
.||... . .-+|.. |+.-. ..+.+.++.+. ....
T Consensus 108 ~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 187 (288)
T 3d1u_A 108 QLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKVLDALDHLAGDPEP 187 (288)
T ss_dssp HHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHHHHHTHHHHTCSCCC
T ss_pred HHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 123210 0 024542 11111 11112223332 2346
Q ss_pred CCeEeecCCCCceeecCCcceeeccccccc
Q 041082 495 TPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 495 ~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
+.++|+|+.+.||+++.+ .+.|.|| .+.
T Consensus 188 ~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~ 215 (288)
T 3d1u_A 188 PARIHGDLWNGNVLWQDD-GAVVIDP-AAH 215 (288)
T ss_dssp CEEECSCCSGGGEEEETT-EEEECSC-CCE
T ss_pred CcceECCCCcCcEEEeCC-CeEEEcC-CcC
Confidence 789999999999999884 5889999 554
No 426
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=92.76 E-value=0.076 Score=52.68 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=26.8
Q ss_pred CCCCeEeecCCCCceeecC---Ccc-eeecccccccc
Q 041082 493 YSTPIIHCDLKLSNVLLGN---NMV-AHLSDFGMAKL 525 (639)
Q Consensus 493 ~~~~i~h~dlk~~nill~~---~~~-~~i~dfgla~~ 525 (639)
..+.++|+|+++.||+++. ++. ..|.||+.+..
T Consensus 188 ~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 188 YTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp CCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred CCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 3567899999999999987 344 47999998764
No 427
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=91.50 E-value=0.16 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+.+.||+++++..+.|.||+.+..
T Consensus 221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~ 252 (357)
T 3ats_A 221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL 252 (357)
T ss_dssp CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence 46789999999999999655578999988764
No 428
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=87.80 E-value=0.29 Score=48.93 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=28.1
Q ss_pred CCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.+.++|||+++.||+++.+..+.|.||+.+.
T Consensus 221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 5789999999999999888889999998775
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=83.96 E-value=2.3 Score=41.22 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.3
Q ss_pred cCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK 447 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~ 447 (639)
...+|+.++.+|..+.+|+-..........|..|...++
T Consensus 28 ~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~ 66 (288)
T 3f7w_A 28 RWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLD 66 (288)
T ss_dssp TEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHH
T ss_pred CeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHH
Confidence 456899999999999999865433333345666766544
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=76.24 E-value=1.7 Score=44.91 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|||+++.||+++.+. ++|.||+.+..
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~ 261 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY 261 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence 67899999999999998776 99999987764
No 431
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=73.82 E-value=1.3 Score=43.69 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=26.7
Q ss_pred CCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
...++|+|+.+.||+++++..+.|.||+.+.
T Consensus 186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 186 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred CcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 4578999999999999988666899998775
No 432
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=73.69 E-value=1.3 Score=44.71 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.5
Q ss_pred CCeEeecCCCCceeecCCcceeecccccccc
Q 041082 495 TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 495 ~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+.++|+|+.+.||++++...+.|.||+.+..
T Consensus 213 ~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 213 RHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp CEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred cEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 6789999999999998887888999998764
No 433
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=72.58 E-value=2.3 Score=40.60 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+.+.||+++++..+-|.||+.+..
T Consensus 192 ~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 192 DSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp CEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred CcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 44588999999999999887778999988763
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=72.05 E-value=3.7 Score=40.64 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCeEeecCCCCceeecCC----cceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~ 525 (639)
.+.++|||+.+.||+++.+ ..+.|.||+.+..
T Consensus 182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 5679999999999999875 6789999988764
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=65.34 E-value=4 Score=40.24 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
...++|||+++.||+++ + .+.|.||+.+.
T Consensus 194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp CCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred CeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 45678999999999999 4 88999998765
No 436
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=55.51 E-value=4.4 Score=41.48 Aligned_cols=29 Identities=28% Similarity=0.372 Sum_probs=23.7
Q ss_pred eEeecCCCCceee------cCCcceeecccccccc
Q 041082 497 IIHCDLKLSNVLL------GNNMVAHLSDFGMAKL 525 (639)
Q Consensus 497 i~h~dlk~~nill------~~~~~~~i~dfgla~~ 525 (639)
++|+|+.+.||++ +++..+.+.||-.|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 4699999999999 3456788999987753
No 437
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=53.56 E-value=8 Score=38.88 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
...++|+|+.+.||+++++. +.|.||..+.
T Consensus 211 ~~~l~HgDl~~~Nil~~~~~-~~lID~e~a~ 240 (369)
T 3c5i_A 211 TIVFCHNDLQENNIINTNKC-LRLIDFEYSG 240 (369)
T ss_dssp CEEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred CeEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence 45689999999999998655 7899998765
No 438
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=53.49 E-value=4.6 Score=40.23 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.9
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
...++|+|+.+.||++++++.+.|.||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 46789999999999999888899999977653
No 439
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=50.58 E-value=6.5 Score=40.02 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|||+.+.||+++.+ .+++.||..+..
T Consensus 226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~ 256 (397)
T 2olc_A 226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY 256 (397)
T ss_dssp CCEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred CCceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence 5679999999999999876 488999977653
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=50.44 E-value=14 Score=38.55 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCeEeecCCCCceeec
Q 041082 494 STPIIHCDLKLSNVLLG 510 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~ 510 (639)
...++|+|+.+.||+++
T Consensus 289 ~~v~cHnDl~~gNIL~~ 305 (458)
T 2qg7_A 289 PIVLCHCDLLSSNIINT 305 (458)
T ss_dssp CEEEECSCCCGGGEEEC
T ss_pred CeeEEecCCCCCcEEee
Confidence 45688999999999998
No 441
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=47.19 E-value=8.1 Score=37.53 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.6
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+.+.||+ ..++.+.+.||..+..
T Consensus 172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 566899999999999 5666789999987753
No 442
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=42.35 E-value=28 Score=31.93 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHHhhh-hhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 469 ILDIFQRLNIMIDVALALE-YLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~-~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.++...|++++..++.... +++ .-+|--+.|.|+.+|.++.|++.-.|+-..+.
T Consensus 81 ~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~lp 135 (219)
T 4ano_A 81 KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKESLP 135 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTTBS
T ss_pred hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCcccCC
Confidence 3677889999999988766 555 24677889999999999999999999866553
No 443
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=41.33 E-value=19 Score=35.31 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCCCeEeecCCCCceeecCCcceeecccc
Q 041082 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 493 ~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
..+.++|+|+.+.|++++.++ +.|.|+.
T Consensus 205 ~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 205 PKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp CCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred CCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 367899999999999999887 8888973
No 444
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=39.98 E-value=9.9 Score=39.25 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.9
Q ss_pred CCCeEeecCCCCceeecCC
Q 041082 494 STPIIHCDLKLSNVLLGNN 512 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~ 512 (639)
...++|+|+.+.||+++++
T Consensus 248 ~~v~~H~Dl~~gNiL~~~~ 266 (429)
T 1nw1_A 248 PVTFCHNDLQEGNILLPKA 266 (429)
T ss_dssp CEEEECSCCCGGGEEEEC-
T ss_pred CeEEEeCCCCCCeEEeeCC
Confidence 4568899999999999875
No 445
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=39.39 E-value=35 Score=31.19 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 469 ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
.++-..|++++..|+..-.+++. =+|--+.|.|++.|.++.|++.-.|+...+.+-
T Consensus 77 ~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~~l~P~ 132 (215)
T 4ann_A 77 SFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQNVVDPL 132 (215)
T ss_dssp GSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETTTBSCC
T ss_pred hcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCccCCCCC
Confidence 46788899999999988777662 357788999999999999999999986655443
No 446
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=36.56 E-value=14 Score=37.39 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCCeEeecCCCCceeecCC----cceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~ 525 (639)
...++|+|+.+.||+++.+ ..+.+.||..|..
T Consensus 219 ~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 219 PVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp CEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred CcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 4568899999999999876 6889999987763
No 447
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=32.30 E-value=18 Score=36.90 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCCeEeecCCCCceeecCC------cceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNN------MVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~------~~~~i~dfgla~~ 525 (639)
...++|+|+.+.||+++.+ ..+.+.||..|..
T Consensus 243 ~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 243 PVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp CEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred CeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 4567899999999999887 6889999987653
No 448
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.97 E-value=99 Score=24.15 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=21.2
Q ss_pred chhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCC
Q 041082 315 PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355 (639)
Q Consensus 315 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 355 (639)
..+|.++++|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555566666555443 3334445566666666555543
No 449
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.35 E-value=1.6e+02 Score=22.94 Aligned_cols=47 Identities=6% Similarity=0.048 Sum_probs=27.2
Q ss_pred CCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCC
Q 041082 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110 (639)
Q Consensus 63 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 110 (639)
+++.+-...|.++++|+.+.+-.+ ++..-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444456777777777776543 33334455666666666666543
No 450
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=24.06 E-value=94 Score=18.80 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHhHHHHHHhh
Q 041082 615 RINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 615 RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
-|+.+++++-|.+|.+.+.+|+
T Consensus 6 Dp~~K~l~~cL~~IgDEld~N~ 27 (34)
T 3pk1_B 6 DASTKKLSECLKRIGDELDSNM 27 (34)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcccH
Confidence 4889999999999999887664
No 451
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=23.96 E-value=29 Score=35.61 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
...++|+|+.+.||+ +.+..+.+.||..|..
T Consensus 261 ~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 261 SLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp CEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred CceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 346789999999999 7788899999987763
Done!