BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041084
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 126 FCVHVGGKAVLDEMEKKVQLSEWHMEPMTLYRFGNTXXXXXWYELAYSEAKGRIRKGDRI 185
F +H + +LD + KK+++ E H P+ + GNT L A G + +G R+
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLMEHCGNTVSSTLPLALETMRANGTLARGMRL 347
Query: 186 WQVGFGSGFN 195
+GFG G++
Sbjct: 348 MLLGFGVGYS 357
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 126 FCVHVGGKAVLDEMEKKVQLSEWHMEPMTLYRFGNTXXXXXWYELAYSEAKGRIRKGDRI 185
F H ++D +++ L W + + R+GNT L + GRIR+GD +
Sbjct: 243 FVPHQANLRIIDAARERLGLP-WERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHV 301
Query: 186 WQVGFGSGFN 195
V FG+G
Sbjct: 302 LLVSFGAGLT 311
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
L R +LK++ +V+ + K + AFEPL
Sbjct: 255 DLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 112 INPYVPDFK-LAFEH---------FCVHVGGKAVLDEMEK--KVQLSEWHMEPMTLYRFG 159
+ P P K LA EH + VH GG +LD++ +V + TL +G
Sbjct: 251 MEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYG 310
Query: 160 NTXXXXXWYELAYSEAKGRIRKGDRIWQVGFGSGFNT 196
N L +G + +G R GFG G
Sbjct: 311 NIASAVVLDALRRLFDEGGVEEGARGLLAGFGPGITA 347
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 129 HVGGKAVLDEMEKKVQL--SEWHMEPMTLYRFGNTXXXXXWYELA----YSEAKGRIRKG 182
H GG+A+LD++E K++L ++ L+ +GN Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 183 DRI-WQV--GFGSGFN 195
+ + W V GFG G
Sbjct: 379 EGLEWGVLLGFGPGIT 394
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 129 HVGGKAVLDEMEKKVQL--SEWHMEPMTLYRFGNTXXXXXWYELA----YSEAKGRIRKG 182
H GG+A+LD++E K++L ++ L+ +GN Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 183 DRI-WQV--GFGSGFN 195
+ + W V GFG G
Sbjct: 379 EGLEWGVLLGFGPGIT 394
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
+ R +LK++ +V+ + K + AFEPL
Sbjct: 255 DVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 153 MTLY-RFGNTXXXXXWYELAYSEAKGRIRKGDRIWQVGFGSGFNTIKPE 200
MT++ GN L+ + GR++KGDRI +G GSG N E
Sbjct: 294 MTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAE 342
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 153 MTLY-RFGNTXXXXXWYELAYSEAKGRIRKGDRIWQVGFGSGFNTIKPE 200
MT++ GN L+ + GR++KGDRI +G GSG N E
Sbjct: 293 MTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAE 341
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 177 GRIRKGDRIWQVGFGSGFNTIKPE 200
GR++KGDRI +G GSG N E
Sbjct: 312 GRLKKGDRIALLGIGSGLNCSMAE 335
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 129 HVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYELAYSEAKGRIRKGDRI- 185
H GG A+LD +E K+ L + +E L +GN + L E + + KG+R
Sbjct: 890 HPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL--DEMRKKSLKGERAT 947
Query: 186 ------WQV--GFGSGF 194
W V GFG G
Sbjct: 948 TGEGLDWGVLFGFGPGL 964
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
A+ F+ N+ + ++A LF +G AA+++ S R +E+ T +T+
Sbjct: 200 AILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTI-------- 251
Query: 59 CLSTRGRVLKNLIVVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKINPYVPD 118
L + +K + G + H PL++ + +EN+ + + + I +
Sbjct: 252 -LPDTEKAMKLHLREGGLTFQLHRDV--PLMVAKN-----IENAAEKALSPLGITDWNSV 303
Query: 119 FKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL----AY 172
F + VH GG+A+LD++E+K+ L E + L +GN + +
Sbjct: 304 F------WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVRKR 357
Query: 173 SEAKGRIRKGDRI---WQVGFGSGFN 195
S A+G+ G+ + GFG G
Sbjct: 358 SMAEGKSTTGEGLDCGVLFGFGPGMT 383
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 129 HVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYELAYSEAK----GRIRKG 182
H GG+A+LD++E+KV L M+ L +GN ++ + K G G
Sbjct: 304 HPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGLKTTG 363
Query: 183 DRI-WQV--GFGSGF 194
+ + W V GFG G
Sbjct: 364 EGLDWGVLFGFGPGL 378
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 52/215 (24%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMC------- 51
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+
Sbjct: 199 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 258
Query: 52 --RRQKLQLCLSTRGRVLKNLIVVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFK 109
++ L +G V +V+ + K + AFEPL
Sbjct: 259 DGHLREAGLTFHLKGAVPD---IVSKNITKALVEAFEPL--------------------- 294
Query: 110 MKINPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXW 167
+ D+ F + H GG A+LD++E+K+ L M L +GN
Sbjct: 295 -----GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVL 347
Query: 168 YEL----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
+ L S G G+ + W V GFG G
Sbjct: 348 FILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 382
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 194 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 253
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 254 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 289
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 290 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 345
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 346 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 377
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 2 AVSFYTGNDRSM--VLANGLFREGDAAILL-SNRSSDRGRSKYELTHTLRTMCRRQKLQL 58
AV+F +D + ++ LF +G AA+++ S+ + + +E+ T +T+ + +
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 59 CLSTRG-----RVLKNLI-VVAGQVLKTHITAFEPLVLPASKQLLFLENSVARTIFKMKI 112
R +LK++ +V+ + K + AFEPL
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPL------------------------ 290
Query: 113 NPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ D+ F + H GG A+LD++E+K+ L M L +GN + L
Sbjct: 291 --GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFIL 346
Query: 171 ----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
S G G+ + W V GFG G
Sbjct: 347 DEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 103 VARTIFKMKINP----YVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLY 156
+++ I K+ P + P + F + VH GG A+LD++E K+ LS M+ L
Sbjct: 288 ISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLA 345
Query: 157 RFGNTXXXXXWYEL 170
+GN + L
Sbjct: 346 SYGNMSSASVLFVL 359
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 1 MAVSFYTGNDRS---MVLANGLFREGDAAILLSNRSSDRGRSKYELTHTLRTM 50
+ + ++TG D +L GLF +G AA+++ + D R +E+ +T+
Sbjct: 217 LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTI 269
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 1 MAVSFYTGNDRS---MVLANGLFREGDAAILLSNRSSDRGRSKYELTHTLRTM 50
+ + ++TG D +L GLF +G AA+++ + D R +E+ +T+
Sbjct: 187 LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTI 239
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 103 VARTIFKMKINPYVP----DFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLY 156
V++ I K + + P D+ F + H GG A+LD++E+K+ L M L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 157 RFGNTXXXXXWYEL----AYSEAKGRIRKGDRI-WQV--GFGSGFN 195
+GN + L S G G+ + W V GFG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLT 378
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 99 LENSVARTIFKMKINPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLY 156
+EN + + KI+ + F + VH GG+A+LD +E K+ L + P +
Sbjct: 286 IENCMVEAFSQFKISDWNKLF------WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMS 339
Query: 157 RFGN 160
+GN
Sbjct: 340 EYGN 343
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 99 LENSVARTIFKMKINPYVPDFKLAFEHFCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLY 156
+EN + + KI+ + F + VH GG+A+LD +E K+ L + P +
Sbjct: 302 IENCMVEAFSQFKISDWNKLF------WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMS 355
Query: 157 RFGN 160
+GN
Sbjct: 356 EYGN 359
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 126 FCVHVGGKAVLDEMEKKVQLSEWHMEPM--TLYRFGNTXXXXXWYEL 170
+ VH GG A+LD++E K++L + + L +GN + L
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVL 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,470,731
Number of Sequences: 62578
Number of extensions: 246951
Number of successful extensions: 538
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 31
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)