BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041085
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 787

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 248 KCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHE 288
           KC++++++W      SP TDA  L  + D   +++  V HE
Sbjct: 680 KCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHE 720


>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
           Transferase 1 (Acaa1)
 pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
           Transferase 1 (Acaa1)
          Length = 418

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 30  GLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQD 89
           GL  +K  + KD S  A  +++    AA  L++  S A    +PI  + R    +G+P D
Sbjct: 250 GLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPD 309

Query: 90  L 90
           +
Sbjct: 310 I 310


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,191,582
Number of Sequences: 62578
Number of extensions: 364116
Number of successful extensions: 900
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 12
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)