BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041085
         (299 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13155|AIMP2_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
           2 OS=Homo sapiens GN=AIMP2 PE=1 SV=2
          Length = 320

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 16/82 (19%)

Query: 72  VPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHE 131
           +P+Y +  + G  G P  ++L T + R PN+   S            +G  P A  V  E
Sbjct: 1   MPMYQVKPYHGG-GAPLRVELPTCMYRLPNVHGRS------------YGPAPGAGHVQEE 47

Query: 132 G---LNALQQNQKDILDRLCKL 150
               L AL+  Q DIL RL +L
Sbjct: 48  SNLSLQALESRQDDILKRLYEL 69


>sp|Q6PJG6|BRAT1_HUMAN BRCA1-associated ATM activator 1 OS=Homo sapiens GN=BRAT1 PE=1 SV=2
          Length = 821

 Score = 31.2 bits (69), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 196 DDRVGLKLLSW-----DDDLAVSQLQKNAVLQQ------KQEDIRSNSLAFPIRFTRGFG 244
           DD    KLL W     + + +V  LQ++  L +      K +D+ S  L+F +R    F 
Sbjct: 25  DDTCLEKLLDWFKTVTEGESSVVLLQEHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFA 84

Query: 245 LKRKCMEWLKEWQSLP 260
            +  C ++L++ + LP
Sbjct: 85  AQENCFQYLQQGELLP 100


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,093,509
Number of Sequences: 539616
Number of extensions: 4641247
Number of successful extensions: 12553
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12553
Number of HSP's gapped (non-prelim): 4
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)