Query 041085
Match_columns 299
No_of_seqs 134 out of 195
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 2.3E-90 5.1E-95 661.7 22.4 258 38-299 1-260 (335)
2 PF11955 PORR: Plant organelle 99.6 1.5E-15 3.3E-20 146.2 5.2 142 48-195 94-294 (335)
3 PF11927 DUF3445: Protein of u 43.1 39 0.00085 31.5 4.6 117 117-251 10-142 (249)
4 PF12872 OST-HTH: OST-HTH/LOTU 35.2 80 0.0017 22.9 4.4 45 58-105 8-63 (74)
5 PRK10870 transcriptional repre 34.2 2.1E+02 0.0045 25.0 7.5 64 62-132 62-128 (176)
6 PF10982 DUF2789: Protein of u 30.5 14 0.00031 28.6 -0.3 28 73-100 4-32 (74)
7 PLN03196 MOC1-like protein; Pr 27.2 39 0.00085 34.6 2.0 48 143-193 325-372 (487)
8 PF04530 Viral_Beta_CD: Viral 24.5 67 0.0015 27.2 2.5 26 235-261 91-116 (122)
9 PRK06264 cbiC precorrin-8X met 23.5 1.2E+02 0.0026 28.0 4.2 58 232-298 153-210 (210)
10 TIGR02337 HpaR homoprotocatech 23.0 1.4E+02 0.003 23.8 4.2 78 60-146 33-113 (118)
11 PLN03196 MOC1-like protein; Pr 22.4 34 0.00073 35.1 0.5 47 144-192 217-263 (487)
12 PF10371 EKR: Domain of unknow 21.6 31 0.00066 25.6 -0.0 16 270-285 44-59 (59)
13 KOG1360 5-aminolevulinate synt 21.2 1.5E+02 0.0032 30.6 4.6 59 90-152 386-444 (570)
14 PRK07539 NADH dehydrogenase su 20.7 1.4E+02 0.0031 25.6 4.0 50 139-190 20-69 (154)
15 PRK03573 transcriptional regul 20.5 2.1E+02 0.0045 23.5 4.8 52 73-131 48-102 (144)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=2.3e-90 Score=661.66 Aligned_cols=258 Identities=47% Similarity=0.768 Sum_probs=246.2
Q ss_pred eccccchHHHHHhhhchHHHHHHHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhhhCCcceeeecccCCCCCCcC
Q 041085 38 WAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVP 117 (299)
Q Consensus 38 wvrd~~LD~~v~r~k~l~~v~~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~FlrkyP~iF~~~~~~~p~~~~~p 117 (299)
|+||++||++|+++|+++++++|+++|+++|+++|||++|++++++||| +++++++||+|||+||++ |.++. .++|
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l-~~~~~~~flrkyP~iF~~--~~~~~-~~~~ 76 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGL-KPRKVSRFLRKYPSIFEV--FQHPS-RSVP 76 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCC-CcccHHHHHHhCCceEEE--eccCC-CCCc
Confidence 9999999999999999999999999999999999999999999999999 469999999999999999 67654 4689
Q ss_pred ceecCHHHHHHHHHHHHHHhhchHHHHHHHHHHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEEeCCCC
Q 041085 118 CFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDD 197 (299)
Q Consensus 118 ~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~~ 197 (299)
||+||++|++|++||+++++++|+++|++|+||||||.+++|||++|+|++||||||+||+++++++|||+|+||+..++
T Consensus 77 ~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~ 156 (335)
T PF11955_consen 77 WFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDG 156 (335)
T ss_pred eEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cceEEEeecCCCccccHHhHHHHHh--hhhccccCCccceeecCCCCcccchhHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q 041085 198 RVGLKLLSWDDDLAVSQLQKNAVLQ--QKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRT 275 (299)
Q Consensus 198 ~~~LeLv~Wd~~LAvs~~E~~~~~~--~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~S 275 (299)
..+||||+|||+||||++|++++.+ +.++...+++++|||+||+||++++++++|+++||+|||+|||+|+++++++|
T Consensus 157 ~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s 236 (335)
T PF11955_consen 157 GRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGS 236 (335)
T ss_pred CCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCC
Confidence 8899999999999999999999965 23444556799999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhccccccCC
Q 041085 276 DVSEKRIVGVFHELLHLTIRKKTE 299 (299)
Q Consensus 276 ~~~EKRaVaVlHElLSLTveKr~e 299 (299)
+++|||||||+||||||||||||+
T Consensus 237 ~~~EKRaVaVlHElLSLTveKr~~ 260 (335)
T PF11955_consen 237 DEAEKRAVAVLHELLSLTVEKRTE 260 (335)
T ss_pred hHHHhHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999986
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.57 E-value=1.5e-15 Score=146.18 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=113.1
Q ss_pred HHhhhchHHHHHHHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHH
Q 041085 48 VAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAAD 127 (299)
Q Consensus 48 v~r~k~l~~v~~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~ 127 (299)
+-.+.....|.+|+++||.+.+++||++.+..++++||||++.. .+++.+||+.|.+. .... +..++.|..+-.+
T Consensus 94 ~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~-~~lv~~yP~~Frvv--~~~~--~~~~LeLv~Wd~~ 168 (335)
T PF11955_consen 94 VREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFR-DSLVPKYPDYFRVV--DLED--GGRYLELVSWDPE 168 (335)
T ss_pred HHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhc-cchhhhCCCCcEEe--ecCC--CCCEEEEeecCCc
Confidence 33334467899999999999999999999999999999998775 88999999999994 2222 2345555554222
Q ss_pred HHH-------H-H------------------------------------HHH---------------HhhchHHHHHHHH
Q 041085 128 VHH-------E-G------------------------------------LNA---------------LQQNQKDILDRLC 148 (299)
Q Consensus 128 L~~-------e-E------------------------------------~~v---------------~~~~e~~~v~rL~ 148 (299)
|+. + | |++ ..++|+.+|..+|
T Consensus 169 LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlH 248 (335)
T PF11955_consen 169 LAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLH 248 (335)
T ss_pred cCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHH
Confidence 211 1 0 000 3358999999999
Q ss_pred HHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEEeCC
Q 041085 149 KLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLP 195 (299)
Q Consensus 149 KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~ 195 (299)
.||.||..|++.+++|.|++++||||.+| ..++-+||++|+|+...
T Consensus 249 ElLSLTveKr~~~~~L~~fr~ef~lp~k~-~~~l~rHPgIFYvS~kg 294 (335)
T PF11955_consen 249 ELLSLTVEKRTEVDHLTHFRKEFGLPQKF-RRLLLRHPGIFYVSLKG 294 (335)
T ss_pred HHHHhhhhhhccHHHHHHHHHHhCCcHHH-HHHHHhCCCeEEEeccC
Confidence 99999999999999999999999999999 56788999999999753
No 3
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=43.11 E-value=39 Score=31.54 Aligned_cols=117 Identities=24% Similarity=0.270 Sum_probs=59.1
Q ss_pred CceecCHHHHHHHHHHHHHHhhchHHHHHHHHHHhhccCCCccchhhHHhhHHhc-CCChhhhcccccCCCCCeEEEeCC
Q 041085 117 PCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDM-GLPYDYCDYLITRHPELFSLVRLP 195 (299)
Q Consensus 117 p~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLMMS~~rrLpL~kl~~lr~dL-GLP~DF~~~lv~~yP~~Frvv~~~ 195 (299)
.|+.+.+.-.+-+++=+++++++...+..- +.....-.+|+ -+- .+-|+.+||++|.+.+..
T Consensus 10 ~wi~iD~~Y~~~~~~R~~ll~~~~~~v~~~--------------~p~~~~A~~Ell~~v---~~~L~~ryP~~F~~~~~~ 72 (249)
T PF11927_consen 10 DWIEIDNTYAARLAERRRLLAEHPDEVLQA--------------LPGSEAAVWELLELV---LDYLPARYPQYFSLDGDG 72 (249)
T ss_pred HhccccHHHHHHHHHHHHHHHHCcchhhcc--------------CccHHHHHHHHHHHH---HHHHHHhCchheEEcCCC
Confidence 588888888888887777777654444332 01111111221 111 123788999999997544
Q ss_pred CC-------cceEEEeecCCCccccHHhHHHHHhhh-----hccccCCc---cceeecCCCCcccchhHHH
Q 041085 196 DD-------RVGLKLLSWDDDLAVSQLQKNAVLQQK-----QEDIRSNS---LAFPIRFTRGFGLKRKCME 251 (299)
Q Consensus 196 ~~-------~~~LeLv~Wd~~LAvs~~E~~~~~~~~-----~~~~~~~~---~~Fp~~fp~G~~l~k~~~~ 251 (299)
++ +....+... ..+....++-.+..-.. ..+..++. -|.-+.||.||.+..|+..
T Consensus 73 ~~~~~n~~~ge~~~~~~~-~~~~~~pL~~~~~~vqEDl~il~~~~~~~~~~L~A~~~cfP~~W~l~~K~G~ 142 (249)
T PF11927_consen 73 DRWWHNRLTGETFPLDPP-DSLPLDPLEILGRLVQEDLCILLRDEEDGEYRLRAGVVCFPAGWSLSEKIGK 142 (249)
T ss_pred ceeEEeccCCCEEecCCC-CCCchhHHHHHHHhChhcEEEEeecCCCCcEEEeheeeecCCCCCHHHHcCC
Confidence 21 112333221 12344455544431100 00101111 3555888888888765443
No 4
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=35.25 E-value=80 Score=22.93 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCC--Ccccccchhhh---------cCcCCCCCcchhhhHhhhCCcceee
Q 041085 58 CFLVSIISSASH--CFVPIYHLCRH---------RGQLGLPQDLKLSTFIRRYPNIFCE 105 (299)
Q Consensus 58 ~~Lk~li~~~p~--~~lpl~~L~k~---------r~~LgLp~~~~~~~FlrkyP~iF~~ 105 (299)
-.|.++|.+.++ +.+++..+... -+.+|. .++..||+..|++|++
T Consensus 8 ~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~---~~l~~ll~~~~~~~~i 63 (74)
T PF12872_consen 8 KLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGF---SSLSELLESLPDVVEI 63 (74)
T ss_dssp HHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTS---SSHHHHHHT-TTTEEE
T ss_pred HHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCC---CcHHHHHHhCCCeEEE
Confidence 456677756554 47898888764 234565 4678999999999999
No 5
>PRK10870 transcriptional repressor MprA; Provisional
Probab=34.22 E-value=2.1e+02 Score=24.99 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=38.0
Q ss_pred HHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhhh---CCcceeeecccCCCCCCcCceecCHHHHHHHHHH
Q 041085 62 SIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRR---YPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEG 132 (299)
Q Consensus 62 ~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~Flrk---yP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE 132 (299)
..|...+++.+...+|++. +|++. -.+.+.+.+ -=-|=. ..+|..+..-.+.||++|.+++.+=
T Consensus 62 ~~L~~~~~~~it~~eLa~~---l~l~~-~tvsr~v~rLe~kGlV~R---~~~~~DrR~~~v~LT~~G~~~~~~i 128 (176)
T PRK10870 62 ITLESQENHSIQPSELSCA---LGSSR-TNATRIADELEKRGWIER---RESDNDRRCLHLQLTEKGHEFLREV 128 (176)
T ss_pred HHHhcCCCCCcCHHHHHHH---HCCCH-HHHHHHHHHHHHCCCEEe---cCCCCCCCeeEEEECHHHHHHHHHH
Confidence 3344455667777777766 88863 333333222 111111 2455555667999999999988864
No 6
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=30.54 E-value=14 Score=28.57 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=20.2
Q ss_pred cccchhhhcCcCCCC-CcchhhhHhhhCC
Q 041085 73 PIYHLCRHRGQLGLP-QDLKLSTFIRRYP 100 (299)
Q Consensus 73 pl~~L~k~r~~LgLp-~~~~~~~FlrkyP 100 (299)
+.+.++.+..+|||| +.-.+.+||.+|+
T Consensus 4 ~~h~l~~LF~QLGL~~~~~~I~~FI~~H~ 32 (74)
T PF10982_consen 4 TQHTLSNLFAQLGLDSSDEAIEAFIETHQ 32 (74)
T ss_dssp T-THHHHHHHHHTS---HHHHHHHHHHS-
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 456788899999999 4456778999998
No 7
>PLN03196 MOC1-like protein; Provisional
Probab=27.20 E-value=39 Score=34.64 Aligned_cols=48 Identities=19% Similarity=0.464 Sum_probs=36.2
Q ss_pred HHHHHHHHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEEe
Q 041085 143 ILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVR 193 (299)
Q Consensus 143 ~v~rL~KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~ 193 (299)
++.+.-.++.+|.++ -..+++-++ .+|+.++-..+++.++|+.+....
T Consensus 325 ~v~k~P~il~lSe~k--l~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S~ 372 (487)
T PLN03196 325 VIEKLPQIVSLNRNV--ALKHVEFLR-GRGFSAQDVAKMVVRCPQILALNL 372 (487)
T ss_pred HHHhcchhhcccHHH--HHHHHHHHH-HcCCCHHHHHHHHHhCCceeeccH
Confidence 345555677777653 245788777 599999888899999999998875
No 8
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=24.51 E-value=67 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.546 Sum_probs=20.5
Q ss_pred eeecCCCCcccchhHHHHHHhhhcCCC
Q 041085 235 FPIRFTRGFGLKRKCMEWLKEWQSLPY 261 (299)
Q Consensus 235 Fp~~fp~G~~l~k~~~~~l~~fQ~LPy 261 (299)
+.|++-+ --++-++-+.+..||+.||
T Consensus 91 Veik~~~-~PIDP~VIaAIHHwQk~Pf 116 (122)
T PF04530_consen 91 VEIKLAP-VPIDPEVIAAIHHWQKYPF 116 (122)
T ss_pred eEEecCC-CCCCHHHHHHHHHHHhCCC
Confidence 4455555 5577889999999999998
No 9
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=23.49 E-value=1.2e+02 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=45.6
Q ss_pred ccceeecCCCCcccchhHHHHHHhhhcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhccccccC
Q 041085 232 SLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT 298 (299)
Q Consensus 232 ~~~Fp~~fp~G~~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~S~~~EKRaVaVlHElLSLTveKr~ 298 (299)
.+++-+-.|-||.--.+.+++|.+ +..|| --..+-..+|.. |+|++|.|+.+-.++|+
T Consensus 153 ~PalVIg~PVGFV~A~ESKe~L~~-~~vP~----It~~GrkGGS~v----AaAivNALl~~~~~~~~ 210 (210)
T PRK06264 153 KPKLVVGVPVGFVKAAESKEALRN-TNIPS----ISTIGPKGGTPV----AVSIINGIIALSKNERA 210 (210)
T ss_pred CCcEEEEeCCccccHHHHHHHHHh-CCCCE----EEEecCCCcHHH----HHHHHHHHHHHhccCCC
Confidence 489999999999988889999976 34544 445555567765 79999999999887764
No 10
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=23.03 E-value=1.4e+02 Score=23.79 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=46.0
Q ss_pred HHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhh---hCCcceeeecccCCCCCCcCceecCHHHHHHHHHHHHHH
Q 041085 60 LVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIR---RYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNAL 136 (299)
Q Consensus 60 Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~Flr---kyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE~~v~ 136 (299)
+-..|...+ .+++..|++. +|+..+ .+.+.|. +- ++-+- ..+|..+....+.||++|.++..+=....
T Consensus 33 iL~~l~~~~--~~t~~ela~~---~~~~~~-tvs~~l~~Le~~-GlI~r--~~~~~D~R~~~v~LT~~G~~~~~~~~~~~ 103 (118)
T TIGR02337 33 ILRILAEQG--SMEFTQLANQ---ACILRP-SLTGILARLERD-GLVTR--LKASNDQRRVYISLTPKGQALYASLSPQI 103 (118)
T ss_pred HHHHHHHcC--CcCHHHHHHH---hCCCch-hHHHHHHHHHHC-CCEEe--ccCCCCCCeeEEEECHhHHHHHHHhhHHH
Confidence 334444443 4666777765 777533 3333332 22 33333 34454444568999999999999877776
Q ss_pred hhchHHHHHH
Q 041085 137 QQNQKDILDR 146 (299)
Q Consensus 137 ~~~e~~~v~r 146 (299)
.+....+.+.
T Consensus 104 ~~~~~~~~~~ 113 (118)
T TIGR02337 104 EEIYAAIEER 113 (118)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 11
>PLN03196 MOC1-like protein; Provisional
Probab=22.38 E-value=34 Score=35.09 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHHHHHHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEE
Q 041085 144 LDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLV 192 (299)
Q Consensus 144 v~rL~KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv 192 (299)
+.+-=.+|.++.++.| ..+++-++ ++|++.+=...++.++|.+|...
T Consensus 217 l~~~P~iL~~sve~~i-~P~v~fL~-~lGv~~~~I~~il~~~P~iL~~s 263 (487)
T PLN03196 217 LTRFPEILGMRVGNNI-KPKVDYLE-SLGLPRLAVARILEKRPYILGFD 263 (487)
T ss_pred HHhCcHHhhcChhhhH-HHHHHHHH-HcCCCHHHHHHHHHhCCceeEcC
Confidence 3333456666666543 24455554 68888877778888888888775
No 12
>PF10371 EKR: Domain of unknown function; InterPro: IPR019456 EKR is a short, 33 residue, domain found in bacterial and some lower eukaryotic species which lies between a POR (pyruvate ferredoxin/flavodoxin oxidoreductase) domain (IPR019752 from INTERPRO) and the 4Fe-4S binding domain (IPR017896 from INTERPRO). It contains a characteristic EKR sequence motif. The exact function of this domain is not known. ; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=21.56 E-value=31 Score=25.58 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=7.6
Q ss_pred CCCCCCcchhhHHHHH
Q 041085 270 HLDPRTDVSEKRIVGV 285 (299)
Q Consensus 270 ~l~~~S~~~EKRaVaV 285 (299)
....++-..|||.|||
T Consensus 44 t~p~GTa~yEKRgIAv 59 (59)
T PF10371_consen 44 TFPTGTAAYEKRGIAV 59 (59)
T ss_dssp -B-TTGGGGT-----S
T ss_pred CccCchhHHHhccccC
Confidence 4667899999999986
No 13
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=21.19 E-value=1.5e+02 Score=30.56 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=41.6
Q ss_pred chhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHHHHHHHHHHHhhchHHHHHHHHHHhh
Q 041085 90 LKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLM 152 (299)
Q Consensus 90 ~~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLM 152 (299)
.++..++|-|-.=|-...-..| .--+.-++.-.-|-.+|-+++.......|.+++++||
T Consensus 386 ~~LvDmiRSyAaGFIFTTSLPP----~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~ 444 (570)
T KOG1360|consen 386 RKLVDMIRSYAAGFIFTTSLPP----MVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLM 444 (570)
T ss_pred hhHHHHHHHhcCceEEecCCCh----HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4667899999886655211222 1234555556667778888888888899999999998
No 14
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=20.65 E-value=1.4e+02 Score=25.57 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeE
Q 041085 139 NQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFS 190 (299)
Q Consensus 139 ~e~~~v~rL~KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Fr 190 (299)
....++..|+.+= ..-+-||-..+..+...+|+|......++.-|+.+..
T Consensus 20 ~~~~ll~~L~~vQ--~~~g~ip~~~~~~iA~~l~v~~~~v~~v~tFY~~f~~ 69 (154)
T PRK07539 20 PRSAVIPALKIVQ--EQRGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIFR 69 (154)
T ss_pred CHHHHHHHHHHHH--HHhCCCCHHHHHHHHHHhCcCHHHHHHHHHHHhhhCc
Confidence 4455666666665 3468899999999999999999999999999998864
No 15
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=20.47 E-value=2.1e+02 Score=23.54 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=30.5
Q ss_pred cccchhhhcCcCCCCCcchhhhH---hhhCCcceeeecccCCCCCCcCceecCHHHHHHHHH
Q 041085 73 PIYHLCRHRGQLGLPQDLKLSTF---IRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHE 131 (299)
Q Consensus 73 pl~~L~k~r~~LgLp~~~~~~~F---lrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~e 131 (299)
+.++|++. +|+.. -.+.+- |.+-=-|=.. .+|..+...++.||++|.++..+
T Consensus 48 t~~eLa~~---l~~~~-~tvt~~v~~Le~~GlV~r~---~~~~DrR~~~l~LT~~G~~~~~~ 102 (144)
T PRK03573 48 SQIQLAKA---IGIEQ-PSLVRTLDQLEEKGLISRQ---TCASDRRAKRIKLTEKAEPLISE 102 (144)
T ss_pred CHHHHHHH---hCCCh-hhHHHHHHHHHHCCCEeee---cCCCCcCeeeeEEChHHHHHHHH
Confidence 44555544 77753 223332 2233333332 45666667899999999998874
Done!