Query 041085
Match_columns 299
No_of_seqs 134 out of 195
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 05:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041085.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041085hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 63.4 11 0.00079 27.6 7.2 86 44-135 18-105 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 46.0 16 0.0012 26.4 5.4 64 62-131 40-105 (115)
3 d1hsja1 a.4.5.28 (A:373-487) S 24.7 71 0.0051 22.6 5.8 67 59-132 36-105 (115)
4 d2a61a1 a.4.5.28 (A:5-143) Tra 24.2 43 0.0031 24.3 4.6 69 61-137 36-106 (139)
5 d2fbha1 a.4.5.28 (A:8-144) Tra 24.0 69 0.005 22.8 5.8 65 61-132 34-100 (137)
6 d1p4xa2 a.4.5.28 (A:126-250) S 21.8 65 0.0047 23.3 5.1 65 60-131 38-105 (125)
7 d2hr3a1 a.4.5.28 (A:2-146) Pro 20.1 1.4E+02 0.011 21.2 7.4 63 62-131 41-105 (145)
8 d2fbka1 a.4.5.28 (A:8-179) Tra 19.8 68 0.005 24.2 5.1 61 65-132 73-136 (172)
9 d1s3ja_ a.4.5.28 (A:) Putative 18.4 78 0.0057 22.7 5.0 56 71-133 49-107 (143)
10 d1gpma1 c.26.2.1 (A:208-404) G 16.0 28 0.002 25.8 1.7 21 162-186 175-195 (197)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=63.35 E-value=11 Score=27.58 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=54.1
Q ss_pred hHHHHHhhhchHHHHHHHHHHhcCCCCcccccchhhhcCcCCCCCcc--hhhhHhhhCCcceeeecccCCCCCCcCceec
Q 041085 44 LDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDL--KLSTFIRRYPNIFCESHVLDSGGTRVPCFGL 121 (299)
Q Consensus 44 LD~~v~r~k~l~~v~~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~--~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rL 121 (299)
+|..+...---..-..+-..|...|++.++..+|++. +|+.+.. ++..-|.+-=-|-.. .+|..+....+.|
T Consensus 18 ~~~~l~~~glt~~q~~vL~~l~~~~~~~it~~ela~~---~~~~~~~vs~~l~~L~~~g~v~r~---~~~~D~R~~~i~l 91 (135)
T d3broa1 18 FDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESE---FSIKSSTATVLLQRMEIKKLLYRK---VSGKDSRQKCLKL 91 (135)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEE---ECSSCTTSEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCHHHHHHH---HCcCHhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhcc
Confidence 3444443333333445667778889999999999977 7775211 333345555555555 3454455678999
Q ss_pred CHHHHHHHHHHHHH
Q 041085 122 TPEAADVHHEGLNA 135 (299)
Q Consensus 122 T~~a~~L~~eE~~v 135 (299)
|++|.+++.+=...
T Consensus 92 T~~G~~~~~~~~~~ 105 (135)
T d3broa1 92 TKKANKLETIILSY 105 (135)
T ss_dssp CHHHHTTHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988764443
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=45.99 E-value=16 Score=26.35 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=44.0
Q ss_pred HHHhcCCCCcccccchhhhcCcCCCCCcc--hhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHHHHHH
Q 041085 62 SIISSASHCFVPIYHLCRHRGQLGLPQDL--KLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHE 131 (299)
Q Consensus 62 ~li~~~p~~~lpl~~L~k~r~~LgLp~~~--~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~e 131 (299)
..|...|++.+++.+|++. +|+.... ++..-|.+---|-.. .+|..+..-++.||++|.+.+++
T Consensus 40 ~~l~~~~~~~~t~~~la~~---l~~~~~tvs~~i~~Le~~gli~r~---~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKEKEYYLKDIINH---LNYKQPQVVKAVKILSQEDYFDKK---RNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCCSEEEHHHHHHH---SSSHHHHHHHHHHHHHHTTSSCCB---CCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHH---HCCCHhHHHHHHHHHHhhhhheee---ecccCCceEEEEECHHHHHHHHH
Confidence 4577788888998888866 8885221 334445555555444 45655566799999999998766
No 3
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=24.68 E-value=71 Score=22.61 Aligned_cols=67 Identities=6% Similarity=-0.002 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHh---hhCCcceeeecccCCCCCCcCceecCHHHHHHHHHH
Q 041085 59 FLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFI---RRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEG 132 (299)
Q Consensus 59 ~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~Fl---rkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE 132 (299)
.+...|...+++.+++..|++. +|+.. -.+.+.| .+-=-|=.. .+|..+..-++.||++|.+++.+-
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~~---l~~~~-~~vs~~i~~Le~~gli~r~---~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAKC---SEFKP-YYLTKALQKLKDLKLLSKK---RSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHS---SCCCH-HHHHHHHHHHHTTTTSCCE---ECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHHH---HCCCh-hhHHHHHHHHHHcCCeEEE---eecCCCceEEEEECHHHHHHHHHH
Confidence 3455566667778898888866 88863 3333333 222222222 345555667999999999998763
No 4
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=24.24 E-value=43 Score=24.27 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHHHhcCCCCcccccchhhhcCcCCCCCcc--hhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHHHHHHHHHHHh
Q 041085 61 VSIISSASHCFVPIYHLCRHRGQLGLPQDL--KLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQ 137 (299)
Q Consensus 61 k~li~~~p~~~lpl~~L~k~r~~LgLp~~~--~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE~~v~~ 137 (299)
-..|...+ .+++++|++. +|++++. +++.-|.+-=-|-.. .+|..+...++.||+.|.+++.+=.....
T Consensus 36 L~~i~~~~--~~t~~~la~~---l~i~~~tvs~~l~~L~~~gli~r~---~~~~D~R~~~i~LT~~G~~~~~~~~~~~~ 106 (139)
T d2a61a1 36 LQKIYFEG--PKRPGELSVL---LGVAKSTVTGLVKRLEADGYLTRT---PDPADRRAYFLVITRKGEEVIEKVIERRE 106 (139)
T ss_dssp HHHHHHHC--CBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEE---EETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHHH---hCCCcccchHHHHHHHhcCeeeee---eccCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 33444443 3567777755 8886432 344455555556555 34544456799999999998886544443
No 5
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.00 E-value=69 Score=22.81 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=38.5
Q ss_pred HHHHhcCCCCcccccchhhhcCcCCCCCcc--hhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHHHHHHH
Q 041085 61 VSIISSASHCFVPIYHLCRHRGQLGLPQDL--KLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEG 132 (299)
Q Consensus 61 k~li~~~p~~~lpl~~L~k~r~~LgLp~~~--~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE 132 (299)
...|...|+ .+++++|+.. +|++++. ++..=|.+.=-|=.. .+|..+..-.+.||++|.+++.+=
T Consensus 34 L~~l~~~~~-~~t~~~la~~---~~~~~~~vs~~v~~L~~~gli~r~---~~~~D~R~~~i~lT~~G~~~~~~~ 100 (137)
T d2fbha1 34 LLHLARHRD-SPTQRELAQS---VGVEGPTLARLLDGLESQGLVRRL---AVAEDRRAKHIVLTPKADVLIADI 100 (137)
T ss_dssp HHHHHHCSS-CCBHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEE---CCBTTBCSCEEEECTTHHHHHHHH
T ss_pred HHHHHHcCC-CCcHHHHHHH---HCCCHHHHHHHHHHHHHcCCcccc---CCCCCCCchhhhcCHHHHHHHHHH
Confidence 344555665 3577777765 7885321 222333333333333 455555567899999999988754
No 6
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=21.77 E-value=65 Score=23.34 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhh---hCCcceeeecccCCCCCCcCceecCHHHHHHHHH
Q 041085 60 LVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIR---RYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHE 131 (299)
Q Consensus 60 Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~Flr---kyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~e 131 (299)
+-..|...+++.+++.++++. +|++. -.+.+-+. +-=-|=.. .+|..+..-++.||++|.++..+
T Consensus 38 vL~~l~~~~~~~~~~~~ia~~---l~~~~-~~vs~~v~~L~~~glV~r~---~~~~D~R~v~i~LT~~G~~~~~~ 105 (125)
T d1p4xa2 38 ILAIITSQNKNIVLLKDLIET---IHHKY-PQTVRALNNLKKQGYLIKE---RSTEDERKILIHMDDAQQDHAEQ 105 (125)
T ss_dssp HHHHHHTTTTCCEEHHHHHHH---SSSCH-HHHHHHHHHHHHHTSSEEE---ECSSSTTCEEEECCHHHHHHHHH
T ss_pred HHHHHHHccCCCccHHHHHHH---HCCCc-chHHHHHHHHHhccCEeee---ecCCCCCeEEEEECHHHHHHHHH
Confidence 445566677778888888876 88863 33333322 22222222 34555556799999999998876
No 7
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.10 E-value=1.4e+02 Score=21.22 Aligned_cols=63 Identities=16% Similarity=-0.013 Sum_probs=35.0
Q ss_pred HHHhcCCCCcccccchhhhcCcCCCCCcc--hhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHHHHHH
Q 041085 62 SIISSASHCFVPIYHLCRHRGQLGLPQDL--KLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHE 131 (299)
Q Consensus 62 ~li~~~p~~~lpl~~L~k~r~~LgLp~~~--~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~e 131 (299)
..|...|+ .+++..|++. +|+..+. +++.-|.+-=-|=. ..+|..+..-++.||++|.+++.+
T Consensus 41 ~~L~~~~g-~~t~~~La~~---~~~~~~~vs~~i~~L~~~glv~r---~~~~~DrR~~~i~LT~~G~~~~~~ 105 (145)
T d2hr3a1 41 GAIDRLGG-DVTPSELAAA---ERMRSSNLAALLRELERGGLIVR---HADPQDGRRTRVSLSSEGRRNLYG 105 (145)
T ss_dssp HHHHHTTS-CBCHHHHHHH---TTCCHHHHHHHHHHHHHTTSEEE---EC------CCEEEECHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHHH---HCCCHHHHHHHHHHHHHcCCeEe---eeCccchhHHHhccCHHHHHHHHH
Confidence 34444554 5888888866 8885321 23334444444422 244555556799999999998765
No 8
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=19.84 E-value=68 Score=24.24 Aligned_cols=61 Identities=18% Similarity=0.010 Sum_probs=33.3
Q ss_pred hcCCCCcccccchhhhcCcCCCCCcchhhhHhh---hCCcceeeecccCCCCCCcCceecCHHHHHHHHHH
Q 041085 65 SSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIR---RYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEG 132 (299)
Q Consensus 65 ~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~Flr---kyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE 132 (299)
.+.|+..++...|++. +|+.. -.+.+.|. +-=-|-.. .+|..+..-.+.||++|.+++.+=
T Consensus 73 ~~~~~~~lt~~eLa~~---l~i~~-~tvsr~l~~Le~~GlV~r~---~~~~DrR~~~i~LT~~G~~l~~~~ 136 (172)
T d2fbka1 73 RSAPPEGLRPTELSAL---AAISG-PSTSNRIVRLLEKGLIERR---EDERDRRSASIRLTPQGRALVTHL 136 (172)
T ss_dssp HHCCSSCBCHHHHHHH---CSCCS-GGGSSHHHHHHHHTSEECC---C-------CCBEECHHHHHHHHHH
T ss_pred hhCCCCCcCHHHHHHH---HCcCH-hHHHHHHHHHHhCCCeeee---ccccchhhHHhhcCHHHHHHHHHH
Confidence 3456667888888766 88753 33333322 22222222 345444567899999999988864
No 9
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=18.42 E-value=78 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=32.2
Q ss_pred cccccchhhhcCcCCCCCcchhhhHhh---hCCcceeeecccCCCCCCcCceecCHHHHHHHHHHH
Q 041085 71 FVPIYHLCRHRGQLGLPQDLKLSTFIR---RYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGL 133 (299)
Q Consensus 71 ~lpl~~L~k~r~~LgLp~~~~~~~Flr---kyP~iF~~~~~~~p~~~~~p~~rLT~~a~~L~~eE~ 133 (299)
.+++.+|++. ++++. -.+.+.+. +-=-|-. ..+|..+....+.||++|.+++.+=.
T Consensus 49 ~~t~~~la~~---~~i~~-~~vs~~l~~L~~~glv~r---~~~~~D~R~~~v~lT~~G~~~~~~~~ 107 (143)
T d1s3ja_ 49 SLKVSEIAER---MEVKP-SAVTLMADRLEQKNLIAR---THNTKDRRVIDLSLTDEGDIKFEEVL 107 (143)
T ss_dssp EEEHHHHHHH---HTSCH-HHHHHHHHHHHHTTSEEE---EECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHH---HCcCH-HHHHHHHHHHHHhhhhee---eeecCCCCceEEEECHHHHHHHHHHH
Confidence 3566666655 77752 33333222 2222222 24555556678999999999888533
No 10
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=16.02 E-value=28 Score=25.77 Aligned_cols=21 Identities=38% Similarity=0.972 Sum_probs=16.8
Q ss_pred hhHHhhHHhcCCChhhhcccccCCC
Q 041085 162 QTIDQLKWDMGLPYDYCDYLITRHP 186 (299)
Q Consensus 162 ~kl~~lr~dLGLP~DF~~~lv~~yP 186 (299)
.-|..+..+||||++. +.|+|
T Consensus 175 ~eV~~lA~~lglP~~i----~~~~p 195 (197)
T d1gpma1 175 DEVRKIGLELGLPYDM----LYRHP 195 (197)
T ss_dssp HHHHHHHHHTTCCHHH----HTSCC
T ss_pred HHHHHHHHHcCCCHHH----hCCCC
Confidence 4688899999999984 66665
Done!