Query 041086
Match_columns 102
No_of_seqs 103 out of 318
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00158 histone H2B; Provisio 100.0 2.3E-45 5E-50 263.3 8.6 83 19-102 16-115 (116)
2 PTZ00463 histone H2B; Provisio 100.0 6.4E-45 1.4E-49 261.3 8.8 84 18-102 16-116 (117)
3 smart00427 H2B Histone H2B. 100.0 5.8E-42 1.2E-46 236.2 7.9 72 30-102 1-89 (89)
4 KOG1744 Histone H2B [Chromatin 100.0 5.8E-38 1.3E-42 227.9 6.8 99 3-102 8-125 (127)
5 PF00125 Histone: Core histone 99.0 1.1E-09 2.3E-14 69.9 4.9 52 27-79 2-74 (75)
6 cd07981 TAF12 TATA Binding Pro 95.8 0.021 4.6E-07 37.1 4.4 35 44-79 29-66 (72)
7 cd00074 H2A Histone 2A; H2A is 94.3 0.13 2.7E-06 36.9 5.2 34 45-79 49-85 (115)
8 PTZ00015 histone H4; Provision 94.2 0.32 6.9E-06 34.5 7.0 45 34-79 34-94 (102)
9 PLN00035 histone H4; Provision 93.7 0.25 5.5E-06 35.1 5.7 36 43-79 55-93 (103)
10 cd00076 H4 Histone H4, one of 93.6 0.28 6.1E-06 33.5 5.7 37 42-79 38-77 (85)
11 COG2036 HHT1 Histones H3 and H 93.3 0.17 3.6E-06 35.2 4.2 37 46-83 48-87 (91)
12 PF03847 TFIID_20kDa: Transcri 93.1 0.17 3.8E-06 33.1 3.9 34 44-78 27-63 (68)
13 PF00808 CBFD_NFYB_HMF: Histon 91.5 0.74 1.6E-05 28.6 5.2 28 49-77 35-65 (65)
14 smart00417 H4 Histone H4. 91.3 0.54 1.2E-05 31.5 4.7 32 42-74 38-72 (74)
15 cd07979 TAF9 TATA Binding Prot 90.8 1.1 2.3E-05 31.9 6.0 49 34-82 5-68 (117)
16 smart00414 H2A Histone 2A. 90.3 0.73 1.6E-05 32.5 4.8 33 45-78 38-73 (106)
17 smart00803 TAF TATA box bindin 90.1 0.48 1E-05 30.5 3.4 31 47-78 32-65 (65)
18 PLN00156 histone H2AX; Provisi 87.4 2.4 5.1E-05 31.7 6.0 33 45-78 58-93 (139)
19 PTZ00017 histone H2A; Provisio 86.7 0.84 1.8E-05 33.8 3.3 34 44-78 55-91 (134)
20 smart00428 H3 Histone H3. 85.5 1.6 3.4E-05 31.0 4.0 31 49-80 68-101 (105)
21 PLN00157 histone H2A; Provisio 84.7 2.1 4.6E-05 31.7 4.5 33 45-78 55-90 (132)
22 KOG1142 Transcription initiati 82.9 1.1 2.3E-05 36.6 2.5 41 44-85 182-229 (258)
23 PLN00153 histone H2A; Provisio 82.2 1.9 4.1E-05 31.8 3.4 33 45-78 53-88 (129)
24 PLN00154 histone H2A; Provisio 77.8 2.8 6.1E-05 31.3 3.1 33 45-78 68-103 (136)
25 smart00576 BTP Bromodomain tra 76.8 8.7 0.00019 24.9 5.0 32 45-78 27-69 (77)
26 PF02969 TAF: TATA box binding 75.9 6.3 0.00014 25.7 4.1 20 59-78 47-66 (66)
27 PLN00121 histone H3; Provision 72.6 4 8.7E-05 30.3 2.8 31 48-79 98-131 (136)
28 PF02291 TFIID-31kDa: Transcri 71.2 16 0.00034 26.7 5.6 43 38-81 33-78 (129)
29 PTZ00018 histone H3; Provision 69.8 5.1 0.00011 29.8 2.8 31 48-79 98-131 (136)
30 PTZ00252 histone H2A; Provisio 67.9 7.5 0.00016 29.0 3.4 34 44-78 53-91 (134)
31 PLN00160 histone H3; Provision 67.8 7 0.00015 27.5 3.1 31 48-79 58-91 (97)
32 cd08050 TAF6 TATA Binding Prot 61.0 15 0.00033 30.0 4.3 22 59-80 43-64 (343)
33 PLN00161 histone H3; Provision 60.6 11 0.00025 28.0 3.2 31 48-79 92-125 (135)
34 PF12055 DUF3536: Domain of un 58.7 35 0.00077 28.0 6.0 50 38-91 7-86 (285)
35 COG5262 HTA1 Histone H2A [Chro 58.0 28 0.00061 25.9 4.8 32 46-78 56-90 (132)
36 KOG1745 Histones H3 and H4 [Ch 57.1 3.2 6.9E-05 31.0 -0.2 27 54-80 104-133 (137)
37 KOG0870 DNA polymerase epsilon 48.8 58 0.0013 25.3 5.5 38 42-80 41-78 (172)
38 PF15630 CENP-S: Kinetochore c 47.1 37 0.0008 22.6 3.7 36 42-78 29-71 (76)
39 PF02257 RFX_DNA_binding: RFX 46.8 29 0.00064 23.6 3.2 33 52-84 26-61 (85)
40 TIGR02442 Cob-chelat-sub cobal 46.5 23 0.00049 31.2 3.3 27 59-85 283-309 (633)
41 PF01023 S_100: S-100/ICaBP ty 45.2 51 0.0011 19.5 3.8 38 46-85 4-42 (44)
42 KOG3334 Transcription initiati 44.3 61 0.0013 24.6 4.9 38 42-80 38-78 (148)
43 TIGR02031 BchD-ChlD magnesium 43.9 25 0.00054 30.8 3.1 27 59-85 237-263 (589)
44 PF14374 Ribos_L4_asso_C: 60S 43.1 5.1 0.00011 27.2 -0.9 12 67-78 18-29 (80)
45 PF05258 DUF721: Protein of un 42.6 21 0.00046 22.1 1.9 25 66-90 18-42 (89)
46 CHL00081 chlI Mg-protoporyphyr 39.9 33 0.00073 28.5 3.2 28 59-86 301-328 (350)
47 TIGR02030 BchI-ChlI magnesium 39.8 33 0.00071 28.2 3.1 28 59-86 288-315 (337)
48 PRK00464 nrdR transcriptional 39.0 1.4E+02 0.0031 22.2 6.2 28 53-81 89-116 (154)
49 cd07353 harmonin_N N-terminal 35.3 37 0.00079 23.3 2.3 25 29-55 18-45 (79)
50 PF01858 RB_A: Retinoblastoma- 33.7 58 0.0013 24.7 3.4 43 47-89 103-171 (194)
51 KOG1756 Histone 2A [Chromatin 32.7 79 0.0017 23.6 3.8 33 45-78 56-91 (131)
52 COG0118 HisH Glutamine amidotr 32.2 11 0.00024 29.7 -0.7 31 54-85 19-49 (204)
53 PF15511 CENP-T: Centromere ki 31.5 1E+02 0.0022 26.0 4.8 30 42-72 378-414 (414)
54 TIGR03543 divI1A_rptt_fam DivI 31.3 56 0.0012 25.2 3.0 26 53-78 17-44 (178)
55 COG2361 Uncharacterized conser 30.9 1.3E+02 0.0028 21.9 4.7 50 30-89 4-56 (117)
56 cd00236 FinO_conjug_rep FinO b 30.8 1E+02 0.0022 23.1 4.1 41 53-94 65-105 (146)
57 PF09193 CholecysA-Rec_N: Chol 29.9 21 0.00046 22.4 0.4 13 69-81 35-47 (47)
58 PHA01748 hypothetical protein 29.6 64 0.0014 20.2 2.6 34 56-91 17-50 (60)
59 PF14500 MMS19_N: Dos2-interac 28.4 1.6E+02 0.0034 23.3 5.1 48 42-91 153-211 (262)
60 KOG0869 CCAAT-binding factor, 28.0 1.7E+02 0.0036 22.7 5.0 21 59-79 78-98 (168)
61 cd08816 CARD_RIG-I_1 Caspase a 27.2 1.1E+02 0.0023 21.6 3.5 35 29-63 8-45 (89)
62 KOG4279 Serine/threonine prote 24.6 77 0.0017 30.6 3.1 42 31-91 1016-1063(1226)
63 KOG1382 Multiple inositol poly 23.5 1.1E+02 0.0024 27.0 3.7 58 31-90 214-273 (467)
64 PRK13406 bchD magnesium chelat 23.5 63 0.0014 28.6 2.3 27 59-85 229-255 (584)
65 PF02269 TFIID-18kDa: Transcri 23.2 66 0.0014 21.7 1.9 32 46-78 31-65 (93)
66 KOG2549 Transcription initiati 22.6 1.4E+02 0.003 27.2 4.2 22 59-80 55-76 (576)
67 PF15302 P33MONOX: P33 mono-ox 22.6 60 0.0013 27.1 1.9 37 39-75 83-132 (294)
68 PF01213 CAP_N: Adenylate cycl 22.0 1.4E+02 0.0031 24.6 3.9 31 30-62 161-198 (312)
69 PRK00285 ihfA integration host 22.0 1.4E+02 0.0031 19.7 3.3 38 53-95 6-43 (99)
70 cd05024 S-100A10 S-100A10: A s 21.9 2E+02 0.0043 19.8 4.1 38 46-87 6-43 (91)
71 PF15469 Sec5: Exocyst complex 21.8 2.6E+02 0.0057 20.1 4.9 41 36-81 126-166 (182)
72 PLN00064 photosystem II protei 21.6 1.9E+02 0.0042 22.3 4.3 30 59-93 105-138 (166)
73 PF08369 PCP_red: Proto-chloro 21.3 1.7E+02 0.0037 17.4 3.3 27 49-76 18-44 (45)
74 PF03477 ATP-cone: ATP cone do 21.2 68 0.0015 20.4 1.6 16 67-82 55-70 (90)
75 PF04157 EAP30: EAP30/Vps36 fa 21.0 1.4E+02 0.003 22.7 3.4 48 31-82 87-147 (223)
76 COG2952 Uncharacterized protei 20.9 3.9E+02 0.0084 20.9 5.8 46 42-88 135-180 (183)
77 COG2511 GatE Archaeal Glu-tRNA 20.6 2.3E+02 0.0049 26.1 5.1 57 42-99 473-551 (631)
78 PF02885 Glycos_trans_3N: Glyc 20.6 61 0.0013 20.1 1.2 23 64-86 11-33 (66)
79 PF12412 DUF3667: Protein of u 20.4 82 0.0018 18.9 1.7 19 73-91 5-24 (46)
80 PF03965 Penicillinase_R: Peni 20.2 95 0.002 20.9 2.2 34 45-79 74-112 (115)
81 cd05026 S-100Z S-100Z: S-100Z 20.2 1.7E+02 0.0036 19.2 3.3 30 54-83 14-44 (93)
No 1
>PLN00158 histone H2B; Provisional
Probab=100.00 E-value=2.3e-45 Score=263.27 Aligned_cols=83 Identities=61% Similarity=0.879 Sum_probs=78.4
Q ss_pred cccccccccCchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhc
Q 041086 19 DKEMKCAKKSIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 19 ~~~kk~~kkr~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlL 81 (102)
+.+++++++|.|+|++||||||| +||+|||||| |||||| |++||+++|||+|||||||||||
T Consensus 16 ~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfv-nDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvL 94 (116)
T PLN00158 16 GAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFI-NDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLIL 94 (116)
T ss_pred cccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhc
Confidence 33556777789999999999999 9999999999 999999 99999999999999999999999
Q ss_pred chhHHHHHHhhhhhhhhccCC
Q 041086 82 PGELVKHIVSEGTKAVTKFTS 102 (102)
Q Consensus 82 PGELaKhAvseGtkAv~ky~s 102 (102)
||||+||||+|||+||++|++
T Consensus 95 pgELaKhAvsEGtkAv~k~~~ 115 (116)
T PLN00158 95 PGELAKHAVSEGTKAVTKFTS 115 (116)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999985
No 2
>PTZ00463 histone H2B; Provisional
Probab=100.00 E-value=6.4e-45 Score=261.30 Aligned_cols=84 Identities=54% Similarity=0.761 Sum_probs=78.6
Q ss_pred CcccccccccCchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhh
Q 041086 18 SDKEMKCAKKSIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 18 ~~~~kk~~kkr~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLl 80 (102)
++.+++++++|.|+|++||||||| +||+|||||| |||||| |++||+++|||+||||||||||
T Consensus 16 ~~~~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfv-nDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 16 PDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFL-VDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred CCccccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 344456677789999999999999 9999999999 999999 9999999999999999999999
Q ss_pred cchhHHHHHHhhhhhhhhccCC
Q 041086 81 LPGELVKHIVSEGTKAVTKFTS 102 (102)
Q Consensus 81 LPGELaKhAvseGtkAv~ky~s 102 (102)
|||||+||||+|||+||++|++
T Consensus 95 LpGELaKhAvsEGtkAv~k~~~ 116 (117)
T PTZ00463 95 LPGELAKHAVSEGTKAVTKFTS 116 (117)
T ss_pred ccHHHHHhhhhHHHHHHHHhhc
Confidence 9999999999999999999986
No 3
>smart00427 H2B Histone H2B.
Probab=100.00 E-value=5.8e-42 Score=236.17 Aligned_cols=72 Identities=61% Similarity=0.923 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhcchhHHHHHHhh
Q 041086 30 KTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVLPGELVKHIVSE 92 (102)
Q Consensus 30 esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlLPGELaKhAvse 92 (102)
|+|++||||||| +||+|||||| |||||| |++||+++|||+|||||||||+|||||+||||+|
T Consensus 1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfv-nDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsE 79 (89)
T smart00427 1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFV-NDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSE 79 (89)
T ss_pred CcHHHHHHHHHHHhCCCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHH
Confidence 689999999999 9999999999 999999 9999999999999999999999999999999999
Q ss_pred hhhhhhccCC
Q 041086 93 GTKAVTKFTS 102 (102)
Q Consensus 93 GtkAv~ky~s 102 (102)
|||||++|++
T Consensus 80 gtkAv~k~~~ 89 (89)
T smart00427 80 GTKAVTKYSS 89 (89)
T ss_pred HHHHHHhhcC
Confidence 9999999985
No 4
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-38 Score=227.90 Aligned_cols=99 Identities=48% Similarity=0.704 Sum_probs=85.3
Q ss_pred CCCccCCCCCccc--CCCcccccccccCchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhc
Q 041086 3 KKPKAGKKLPKKA--ASSDKEMKCAKKSIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYK 63 (102)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~kk~~kkr~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~ 63 (102)
++|.+.+.+++.. ...+.++++..++.|+|+.||||||| +||+|||||+ |||||| |++||
T Consensus 8 ~~~~~~~~~~~~~~k~~kk~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~-ndife~iA~ea~rla~y~ 86 (127)
T KOG1744|consen 8 KAPGSKKFLPKAFKKAQKKAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFV-NDIFERIASEAGRLAHYN 86 (127)
T ss_pred cCCcccccccchhccccccccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHH-HHHHHHHHHHHhhhhhhc
Confidence 3455555444422 11233577788999999999999999 9999999999 999999 99999
Q ss_pred CCCCcchHHHHHHHHhhcchhHHHHHHhhhhhhhhccCC
Q 041086 64 KKPMITSWEIQTVGRLVLPGELVKHIVSEGTKAVTKFTS 102 (102)
Q Consensus 64 kr~TltsreIQtAvrLlLPGELaKhAvseGtkAv~ky~s 102 (102)
+|+|||||||||||||+|||||++||++|||+||++|++
T Consensus 87 krstisSreiqta~rLllPgel~khA~seGtkav~ky~~ 125 (127)
T KOG1744|consen 87 KRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 125 (127)
T ss_pred CCCcccHHHHHHHHHHhCchHHhhhhhcccchhheeecc
Confidence 999999999999999999999999999999999999985
No 5
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.97 E-value=1.1e-09 Score=69.91 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=47.5
Q ss_pred cCchhHHHHHHHHHH--------------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHh
Q 041086 27 KSIKTYKIYIFKVLN--------------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 27 kr~esy~~YI~KVLK--------------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrL 79 (102)
++...+..||.||++ .||.+|++++ +|++++ ++.+++|.||+++|||.|+|+
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~-E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVL-EYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhh-hhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 356778999999999 8999999999 999888 899999999999999999986
No 6
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=95.78 E-value=0.021 Score=37.11 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..+.+.|+ .++++. ||.+.++.||..+|||-+++-
T Consensus 29 ~~~~e~fv-~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 29 LEIADDFV-DDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35788999 999998 999999999999999988763
No 7
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=94.31 E-value=0.13 Score=36.93 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
.+|.-+. -+|+|. .++.+++.+||+++|+.|++-
T Consensus 49 AvLEYL~-aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 49 AVLEYLT-AEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 4777888 888888 899999999999999999983
No 8
>PTZ00015 histone H4; Provisional
Probab=94.21 E-value=0.32 Score=34.45 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHHH-------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 34 IYIFKVLN-------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 34 ~YI~KVLK-------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
.-|.|+++ ..-.+++.|+ .+|... ++.|.+|.|+|+.||.-|++.
T Consensus 34 ~~IrRLarr~GvkRIS~d~y~e~r~vle~~l-~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 34 GAIRRLARRGGVKRISGDIYEEVRGVLKAFL-ENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred HHHHHHHHHcCCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 45777777 4445677777 777666 899999999999999888763
No 9
>PLN00035 histone H4; Provisional
Probab=93.69 E-value=0.25 Score=35.10 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 43 SILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 43 Am~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
-..+++.|. .+|... ++.+.+|.|++..||.-|++.
T Consensus 55 lr~vle~~l-~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 55 TRGVLKIFL-ENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 344666777 666666 899999999999999998874
No 10
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=93.61 E-value=0.28 Score=33.54 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 42 KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
....+++.|. .+|... ++.+.+|.|+|+.||.-|++.
T Consensus 38 e~~~~l~~~l-~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 38 EVRNVLKSYL-EDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 3445666777 666665 889999999999999988763
No 11
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=93.26 E-value=0.17 Score=35.19 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhhcch
Q 041086 46 ILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLVLPG 83 (102)
Q Consensus 46 ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLlLPG 83 (102)
.+..|. -+|++. +|.+.+|.||+..||+-|.+.+.+.
T Consensus 48 ~~e~~~-~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 48 ALEEYL-EEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 345666 677777 9999999999999999999987654
No 12
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=93.11 E-value=0.17 Score=33.08 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..+.+.|| +|+.+. ||++.+..||..+|||-...
T Consensus 27 l~laddFv-~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 27 LELADDFV-DDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 35778899 999888 99999999999999997653
No 13
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=91.52 E-value=0.74 Score=28.60 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=20.8
Q ss_pred HhhhhhHHHH---hHhhcCCCCcchHHHHHHH
Q 041086 49 SRARHNIFEE---FARYKKKPMITSWEIQTVG 77 (102)
Q Consensus 49 Sfv~nDiFer---La~~~kr~TltsreIQtAv 77 (102)
-|+ .++-.. .+..+++.||+.+||.+||
T Consensus 35 ~Fi-~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 35 EFI-QYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHH-HHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 344 444444 7889999999999999986
No 14
>smart00417 H4 Histone H4.
Probab=91.32 E-value=0.54 Score=31.46 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHH
Q 041086 42 KSILILESRARHNIFEE---FARYKKKPMITSWEIQ 74 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQ 74 (102)
....+|+.|. .+|... ++.+.++.|+++.||-
T Consensus 38 elr~vle~~l-~~I~rdav~~a~ha~RKTV~~~DV~ 72 (74)
T smart00417 38 ETRNVLKSFL-ENVVRDAVTYTEHARRKTVTAMDVV 72 (74)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCcccHHHhe
Confidence 4455777787 777666 9999999999999985
No 15
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=90.78 E-value=1.1 Score=31.87 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=34.2
Q ss_pred HHHHHHHH---------HHHHHHHHhhh---hhHHHH---hHhhcCCCCcchHHHHHHHHhhcc
Q 041086 34 IYIFKVLN---------KSILILESRAR---HNIFEE---FARYKKKPMITSWEIQTVGRLVLP 82 (102)
Q Consensus 34 ~YI~KVLK---------kAm~ImnSfv~---nDiFer---La~~~kr~TltsreIQtAvrLlLP 82 (102)
..|.++|+ ++..-|--|+- .||... ++.+.+|.||+..||.-|+...+.
T Consensus 5 ~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 5 RVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 45667777 44444444430 444444 899999999999999999988775
No 16
>smart00414 H2A Histone 2A.
Probab=90.25 E-value=0.73 Score=32.52 Aligned_cols=33 Identities=33% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.||..+. .+|+|. -++.+++.-||+++||.|++
T Consensus 38 AvLEYLt-aEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 38 AVLEYLT-AEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 4788888 899998 78889999999999999997
No 17
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=90.12 E-value=0.48 Score=30.53 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
+..++ ..|.+. ++++.+|.|||..||..|++
T Consensus 32 ~e~rl-~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 32 VEYRI-KEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHH-HHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 34444 445555 89999999999999988864
No 18
>PLN00156 histone H2AX; Provisional
Probab=87.36 E-value=2.4 Score=31.71 Aligned_cols=33 Identities=36% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.||.-++ -.|+|. -++.+++.-||+|.||.|++
T Consensus 58 AVLEYLt-aEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 58 AVLEYLA-AEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 5677777 888888 88999999999999999997
No 19
>PTZ00017 histone H2A; Provisional
Probab=86.71 E-value=0.84 Score=33.81 Aligned_cols=34 Identities=32% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
-.||.-+. -+|+|. .++.+++.-||+|+||.|++
T Consensus 55 AAVLEYLt-aEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 55 AAVLEYLT-AEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 35788888 899998 88999999999999999998
No 20
>smart00428 H3 Histone H3.
Probab=85.55 E-value=1.6 Score=31.03 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=26.4
Q ss_pred HhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 49 SRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 49 Sfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
.|+ -++||. ++.+.+|-||.++|||-|.||-
T Consensus 68 ~yl-v~lfeda~~~a~HAkRvTl~~kDi~La~rir 101 (105)
T smart00428 68 AYL-VGLFEDTNLLAIHAKRVTIMPKDIQLARRIR 101 (105)
T ss_pred HHH-HHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence 456 677888 8999999999999999998853
No 21
>PLN00157 histone H2A; Provisional
Probab=84.70 E-value=2.1 Score=31.69 Aligned_cols=33 Identities=36% Similarity=0.323 Sum_probs=29.5
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.||.-+. .+|+|. -++.+++.-||+|.||.|++
T Consensus 55 AVLEYLt-aEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 55 AVLEYLA-AEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 4677788 888888 88999999999999999997
No 22
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.87 E-value=1.1 Score=36.57 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH----hhcchhH
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR----LVLPGEL 85 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr----LlLPGEL 85 (102)
..|-+-|| +||-.+ ||.+.+..||-.+|||-.+. +-+||.=
T Consensus 182 leiADdFV-~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~ 229 (258)
T KOG1142|consen 182 LEIADDFV-SSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFS 229 (258)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCcc
Confidence 45778899 998666 99999999999999997653 4566653
No 23
>PLN00153 histone H2A; Provisional
Probab=82.16 E-value=1.9 Score=31.80 Aligned_cols=33 Identities=33% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.||.-++ ..|+|. .++.+++.-||+|.||.|++
T Consensus 53 AVLEYLt-aEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 53 AVLEYLT-AEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 4677888 888988 88999999999999999997
No 24
>PLN00154 histone H2A; Provisional
Probab=77.80 E-value=2.8 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.||+-+. -+|+|- -++.+++.-||+|.||.|++
T Consensus 68 AVLEYLt-AEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 68 AILEYLT-AEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 4566777 778877 88999999999999999997
No 25
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=76.85 E-value=8.7 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=24.1
Q ss_pred HHHHHhhhhhHHHH-----------hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE-----------FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer-----------La~~~kr~TltsreIQtAvr 78 (102)
+.+++|. |++++ ++...+|.+.+..||.-|+.
T Consensus 27 sale~lt--di~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 27 SALETLT--DILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3455554 66655 67789999999999998875
No 26
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=75.87 E-value=6.3 Score=25.71 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.1
Q ss_pred hHhhcCCCCcchHHHHHHHH
Q 041086 59 FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvr 78 (102)
++++.+|.+||+.||..|.|
T Consensus 47 fm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 47 FMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHhCCCCCCHHHHHHHhC
Confidence 88999999999999999975
No 27
>PLN00121 histone H3; Provisional
Probab=72.64 E-value=4 Score=30.28 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=26.6
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|+ -++||- .+.+.+|-||.++|||=|.||
T Consensus 98 E~yL-v~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PLN00121 98 EAYL-VGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred HHHH-HHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence 4566 788888 889999999999999999874
No 28
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=71.15 E-value=16 Score=26.67 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhhc
Q 041086 38 KVLNKSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 38 KVLKkAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLlL 81 (102)
+|.-+=|+.+--++ .||++. .+.+.++.+|+..||+-|+..-+
T Consensus 33 rVv~qLLEfayRYt-~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~ 78 (129)
T PF02291_consen 33 RVVNQLLEFAYRYT-SDVLEDAQVYADHAGRSTIDADDVRLAIQSRL 78 (129)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 33337777777888 888888 89999999999999999998654
No 29
>PTZ00018 histone H3; Provisional
Probab=69.81 E-value=5.1 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|+ -++||- .+.+.+|-||..+|||=|.||
T Consensus 98 E~yL-v~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PTZ00018 98 EAYL-VGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred HHHH-HHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence 4567 788888 789999999999999999875
No 30
>PTZ00252 histone H2A; Provisional
Probab=67.94 E-value=7.5 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=27.6
Q ss_pred HHHHHHhhhhhHHHH---hH--hhcCCCCcchHHHHHHHH
Q 041086 44 ILILESRARHNIFEE---FA--RYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La--~~~kr~TltsreIQtAvr 78 (102)
-.||+-+. ..|+|. -+ +.|++.-||+|.||-||+
T Consensus 53 AAVLEYLt-aEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 53 AAVLEYLT-AELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 34778888 888888 44 348889999999999997
No 31
>PLN00160 histone H3; Provisional
Probab=67.82 E-value=7 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|+ -++||- .+.+.+|-||.++|||=|.|+
T Consensus 58 EayL-v~lfed~~lca~HakRVTl~~kD~~L~~ri 91 (97)
T PLN00160 58 EAHL-VGLFEDSNLCAIHGKRVTIMPKDMQLARRI 91 (97)
T ss_pred HHHH-HHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence 3556 678888 789999999999999999873
No 32
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=61.04 E-value=15 Score=29.99 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred hHhhcCCCCcchHHHHHHHHhh
Q 041086 59 FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLl 80 (102)
+++..+|.||+..||..|++..
T Consensus 43 ~~~hskR~~l~~~Di~~Al~~~ 64 (343)
T cd08050 43 FMRHSKRRKLTTSDVNHALRLR 64 (343)
T ss_pred HHHHhCCCcCCHHHHHHHHHHh
Confidence 8999999999999999999863
No 33
>PLN00161 histone H3; Provisional
Probab=60.61 E-value=11 Score=27.96 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.2
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|+ -++||- .+.+.+|-||.++|||-|.||
T Consensus 92 EayL-V~lFeda~lcaiHAkRVTlm~kDm~La~ri 125 (135)
T PLN00161 92 EDFL-VHLFEDCNLCAIHAKRVTIMPKDMQLARRI 125 (135)
T ss_pred HHHH-HHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 3456 677888 789999999999999999875
No 34
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=58.67 E-value=35 Score=28.03 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHH------------------------------hHhhcCCCCcchHHHHHHHHhhcchhHHH
Q 041086 38 KVLNKSILILESRARHNIFEE------------------------------FARYKKKPMITSWEIQTVGRLVLPGELVK 87 (102)
Q Consensus 38 KVLKkAm~ImnSfv~nDiFer------------------------------La~~~kr~TltsreIQtAvrLlLPGELaK 87 (102)
.-|++|++.+..-+ ..+||+ ...-.-...|+..|...|.+|| |+.+
T Consensus 7 ~PLR~Ald~Lrd~l-~~~fe~~~~~l~~Dpw~ar~~Yi~Vil~~s~~~~~~Fl~~h~~~~l~~~e~~~al~LL---EmQr 82 (285)
T PF12055_consen 7 APLREALDWLRDRL-DELFEEEGGELFKDPWAARDEYIEVILDRSPENVEAFLARHAKRPLSPEERVEALKLL---EMQR 82 (285)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHH---HHHH
Confidence 34667777777777 777777 1122445668999999999998 8888
Q ss_pred HHHh
Q 041086 88 HIVS 91 (102)
Q Consensus 88 hAvs 91 (102)
||+-
T Consensus 83 ~~l~ 86 (285)
T PF12055_consen 83 HALL 86 (285)
T ss_pred HHHH
Confidence 8764
No 35
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=58.03 E-value=28 Score=25.92 Aligned_cols=32 Identities=38% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 46 ILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 46 ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
++.-+. ..|.|- .|+-+++.-|++|.||-|+|
T Consensus 56 vleYL~-aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 56 VLEYLA-AEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred HHHHHH-HHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 455555 666666 89999999999999999998
No 36
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=57.09 E-value=3.2 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.4
Q ss_pred hHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 54 NIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 54 DiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
++||- .|.+.++-||-+.|||=|.|+-
T Consensus 104 ~LfEdtnlcAihAkRVTimpkdiQlArrir 133 (137)
T KOG1745|consen 104 GLFEDTNLCAIHAKRVTIMPKDIQLARRIR 133 (137)
T ss_pred HhccccchhhhccceeEecccceehhhhcc
Confidence 45555 6788999999999999999943
No 37
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=48.82 E-value=58 Score=25.30 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhh
Q 041086 42 KSILILESRARHNIFEEFARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 42 kAm~ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLl 80 (102)
+|-.|.-.|+ .+.-..+|+-++|.||+..||-.|.+-+
T Consensus 41 raAtVFv~~L-ts~s~e~A~~q~rKt~sadDVl~aL~Ei 78 (172)
T KOG0870|consen 41 RAATVFVIFL-TSVSNEIAKDQKRKTISADDVLKALDEI 78 (172)
T ss_pred HHHHHHHHHH-HHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 4445555555 4433449999999999999999998844
No 38
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=47.07 E-value=37 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHH
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvr 78 (102)
+.++.|--++ .+..+. .|++.+|+||+..|+.=.+|
T Consensus 29 ~~i~al~ELv-~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 29 QFIAALTELV-YKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 4555555555 444333 88999999999999764443
No 39
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=46.81 E-value=29 Score=23.64 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.5
Q ss_pred hhhHHHH---hHhhcCCCCcchHHHHHHHHhhcchh
Q 041086 52 RHNIFEE---FARYKKKPMITSWEIQTVGRLVLPGE 84 (102)
Q Consensus 52 ~nDiFer---La~~~kr~TltsreIQtAvrLlLPGE 84 (102)
|++||++ .+.-+.-..|++-..=--||.++|+-
T Consensus 26 R~~lY~~Y~~~C~~~~~~pln~AsFGKlir~vFP~l 61 (85)
T PF02257_consen 26 RSDLYAHYLSFCEKNGIKPLNAASFGKLIRQVFPNL 61 (85)
T ss_dssp HHHHHHHHHHHHHHTT-----HHHHHHHHHHHSTT-
T ss_pred hHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCC
Confidence 6788888 77778888999999999999999973
No 40
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=46.54 E-value=23 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=25.2
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
+|..+.+.+++..||+.|++|+|+.-+
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 889999999999999999999998765
No 41
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=45.21 E-value=51 Score=19.54 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHhhhhhHHHHhH-hhcCCCCcchHHHHHHHHhhcchhH
Q 041086 46 ILESRARHNIFEEFA-RYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 46 ImnSfv~nDiFerLa-~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
.|.++| |+|.+-| +-..+.||+-+|...=+.-=||+-|
T Consensus 4 ai~~iI--~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~fl 42 (44)
T PF01023_consen 4 AIETII--DVFHKYAGKEGDKDTLSKKELKELLEKELPNFL 42 (44)
T ss_dssp HHHHHH--HHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTTH
T ss_pred HHHHHH--HHHHHHhccCCCCCeEcHHHHHHHHHHHHHHHh
Confidence 356676 8898844 5578999999999988877777654
No 42
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.35 E-value=61 Score=24.62 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 42 KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
+=|..=--++ .+|++- .+.+.++.||+..||+.|+...
T Consensus 38 qlLefa~rYt-t~vL~DA~vys~HA~ka~i~~eDVrlA~~~~ 78 (148)
T KOG3334|consen 38 QLLEFAYRYT-TTVLDDAKVYSSHAKKATIDAEDVRLAIQMR 78 (148)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3344333445 566655 8899999999999999999865
No 43
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=43.86 E-value=25 Score=30.83 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=24.7
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
+|-.+.+.+++..||+.|++|+|+.-+
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhhhc
Confidence 889999999999999999999997644
No 44
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=43.13 E-value=5.1 Score=27.22 Aligned_cols=12 Identities=58% Similarity=0.543 Sum_probs=10.4
Q ss_pred CcchHHHHHHHH
Q 041086 67 MITSWEIQTVGR 78 (102)
Q Consensus 67 TltsreIQtAvr 78 (102)
-|.|.|||++||
T Consensus 18 iInSdEIQsvlr 29 (80)
T PF14374_consen 18 IINSDEIQSVLR 29 (80)
T ss_dssp HHHSHHHHCCCH
T ss_pred HhccHHHHHHHh
Confidence 368999999998
No 45
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=42.56 E-value=21 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.7
Q ss_pred CCcchHHHHHHHHhhcchhHHHHHH
Q 041086 66 PMITSWEIQTVGRLVLPGELVKHIV 90 (102)
Q Consensus 66 ~TltsreIQtAvrLlLPGELaKhAv 90 (102)
......+++.+..-++|.+|+.|.-
T Consensus 18 ~~~~~~~l~~~w~~ivg~~l~~~~~ 42 (89)
T PF05258_consen 18 RALQLARLQQNWKQIVGPELAQHTR 42 (89)
T ss_pred hhHHHHHHHHHHHHHhCHHHHccEE
Confidence 5566778999999999999998863
No 46
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=39.90 E-value=33 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=25.5
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhHH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGELV 86 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGELa 86 (102)
+|-.+.|..+++.||+.+++++|+.-+.
T Consensus 301 ~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 301 LAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 8899999999999999999999986553
No 47
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=39.81 E-value=33 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.327 Sum_probs=25.4
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhHH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGELV 86 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGELa 86 (102)
+|-.+.|..+++.||+.+++++|+.-+-
T Consensus 288 ~Aal~GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 288 LAAFEGRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 8889999999999999999999987553
No 48
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=39.01 E-value=1.4e+02 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=18.5
Q ss_pred hhHHHHhHhhcCCCCcchHHHHHHHHhhc
Q 041086 53 HNIFEEFARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 53 nDiFerLa~~~kr~TltsreIQtAvrLlL 81 (102)
.+|-+.|..- ....++..|||.+|.-.|
T Consensus 89 ~~V~~~l~~~-~~~~IsveEIqDiVE~~L 116 (154)
T PRK00464 89 SRIERQLRAS-GEREVPSKEIGELVMEEL 116 (154)
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444445443 235799999999998554
No 49
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=35.26 E-value=37 Score=23.31 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHH---HHHHHHHHhhhhhH
Q 041086 29 IKTYKIYIFKVLN---KSILILESRARHNI 55 (102)
Q Consensus 29 ~esy~~YI~KVLK---kAm~ImnSfv~nDi 55 (102)
.|+=..|+|-||+ ++|+ +--|| +|+
T Consensus 18 ~EaEkd~lY~~Lr~YHqSm~-lp~li-~Dl 45 (79)
T cd07353 18 NEAEKDYLYDVLRMYHQSMN-LPVLV-GDL 45 (79)
T ss_pred cHHHHHHHHHHHHHHHhccC-HHHHH-HHH
Confidence 3566789999999 8998 56678 887
No 50
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=33.69 E-value=58 Score=24.72 Aligned_cols=43 Identities=35% Similarity=0.462 Sum_probs=24.0
Q ss_pred HHHhhhhhHHHH----------hHhhcCC----------CCcchHHHHHHHHhh------cchhHHHHH
Q 041086 47 LESRARHNIFEE----------FARYKKK----------PMITSWEIQTVGRLV------LPGELVKHI 89 (102)
Q Consensus 47 mnSfv~nDiFer----------La~~~kr----------~TltsreIQtAvrLl------LPGELaKhA 89 (102)
+.+++.+|+|.| |..|+-- .-|++-|.+.-+.++ ||.||.||=
T Consensus 103 ls~LL~~~~FhrsL~ACclEiVl~sy~~~~~~FPwiL~~~~i~~f~f~KvIE~~Vr~~~~Lpr~lvkHL 171 (194)
T PF01858_consen 103 LSSLLSQEIFHRSLLACCLEIVLFSYKSVSLSFPWILEVFDIHPFDFYKVIESFVRHEDGLPRELVKHL 171 (194)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHTCTSSSSTTHHHHHTT--HHHHHTTHHHHHHH-TT--HHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCcchHHHHhcCCChhhHhhHHHHHHHccccCCHHHHHHH
Confidence 345665899999 3344421 236677766666654 799999984
No 51
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=32.68 E-value=79 Score=23.60 Aligned_cols=33 Identities=36% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.++.-+. ..|.|- .|+-|++.-|++|.||-|++
T Consensus 56 avLeYL~-Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 56 AVLEYLT-AEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred HHHHHHH-HHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 3455555 666666 78999999999999999998
No 52
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=32.16 E-value=11 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=23.5
Q ss_pred hHHHHhHhhcCCCCcchHHHHHHHHhhcchhH
Q 041086 54 NIFEEFARYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 54 DiFerLa~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
--|||+. ++-.-|=.++||+.|=+|+|||-=
T Consensus 19 ~Aler~G-~~~~vs~d~~~i~~AD~liLPGVG 49 (204)
T COG0118 19 KALERLG-AEVVVSRDPEEILKADKLILPGVG 49 (204)
T ss_pred HHHHHcC-CeeEEecCHHHHhhCCEEEecCCC
Confidence 3466655 555566688999999999999853
No 53
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=31.50 E-value=1e+02 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHH
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWE 72 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~Tltsre 72 (102)
.||..+.... +..||+ .|.+.+|+||...|
T Consensus 378 dal~aleqas-dwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 378 DALEALEQAS-DWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 8999999999 999999 56778999997654
No 54
>TIGR03543 divI1A_rptt_fam DivIVA domain repeat protein. Members of this protein family contain two full and two partial repeats of a domain found at the N-terminus of Bacillus subtilis cell-division initiation protein DivIVA. The portion repeated four times in these proteins includes the motif GYxxxxVD.
Probab=31.28 E-value=56 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred hhHHHH-hHhhcCCCC-cchHHHHHHHH
Q 041086 53 HNIFEE-FARYKKKPM-ITSWEIQTVGR 78 (102)
Q Consensus 53 nDiFer-La~~~kr~T-ltsreIQtAvr 78 (102)
+++|+| -+.|..... ||+.||+.++=
T Consensus 17 D~fl~r~~~~~e~~~~~lt~~~VR~~~F 44 (178)
T TIGR03543 17 DAFLERARAAYDNEGGNLTSHDIRNVAF 44 (178)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHhhc
Confidence 788889 456666665 99999998863
No 55
>COG2361 Uncharacterized conserved protein [Function unknown]
Probab=30.90 E-value=1.3e+02 Score=21.93 Aligned_cols=50 Identities=28% Similarity=0.471 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhH-HHHhHhhcCCCCcchHHHHHHHH--hhcchhHHHHH
Q 041086 30 KTYKIYIFKVLNKSILILESRARHNI-FEEFARYKKKPMITSWEIQTVGR--LVLPGELVKHI 89 (102)
Q Consensus 30 esy~~YI~KVLKkAm~ImnSfv~nDi-FerLa~~~kr~TltsreIQtAvr--LlLPGELaKhA 89 (102)
..++.|++-+| +|+.-.-+|. +|+ |+.+ +.+..+|.||- |.+=||-+||-
T Consensus 4 k~~~~yL~diL-~a~~~i~~yT-~~~d~~~F--------~~~~~~~dAvir~L~iIGEa~k~i 56 (117)
T COG2361 4 KDDRVYLYDIL-QAAERIEEYT-KDMDYEEF--------IADKLTQDAVIRNLEIIGEATKRI 56 (117)
T ss_pred ccHHHHHHHHH-HHHHHHHHHh-ccCCHHHH--------HHhHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666666 4555555666 555 3332 35678888874 55567777763
No 56
>cd00236 FinO_conjug_rep FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions
Probab=30.76 E-value=1e+02 Score=23.10 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.9
Q ss_pred hhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHHhhhh
Q 041086 53 HNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIVSEGT 94 (102)
Q Consensus 53 nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKhAvseGt 94 (102)
.|||+.|+.+ .-..||..++..|++...-+.==-+++.+|.
T Consensus 65 ~di~~dl~~~-~~~~lsk~~Lr~AL~~~t~s~rYL~~~~~Ga 105 (146)
T cd00236 65 DGILQDVAQH-PNIPLTHEELRCAVKAITRRESYLQAMVAGA 105 (146)
T ss_pred HHHHHHHHhC-ccCCCCHHHHHHHHHHHhCCHHHHHHHhCCC
Confidence 7888888866 4456999999999998887766666666664
No 57
>PF09193 CholecysA-Rec_N: Cholecystokinin A receptor, N-terminal; InterPro: IPR015276 This entry represents the extracellular N-terminal domain of the cholecystokinin A receptor. This domain adopts a tertiary structure consisting of a few helical turns and a disulphide-cross linked loop. It is required for interaction of the cholecystokinin A receptor with its corresponding hormonal ligand []. ; PDB: 1D6G_A.
Probab=29.90 E-value=21 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=9.5
Q ss_pred chHHHHHHHHhhc
Q 041086 69 TSWEIQTVGRLVL 81 (102)
Q Consensus 69 tsreIQtAvrLlL 81 (102)
.|+|.|-||++||
T Consensus 35 pske~qpaVqILL 47 (47)
T PF09193_consen 35 PSKEWQPAVQILL 47 (47)
T ss_dssp S-SSHHHHHHS--
T ss_pred ChhHHhhhHhhhC
Confidence 8999999999986
No 58
>PHA01748 hypothetical protein
Probab=29.64 E-value=64 Score=20.23 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHHh
Q 041086 56 FEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIVS 91 (102)
Q Consensus 56 FerLa~~~kr~TltsreIQtAvrLlLPGELaKhAvs 91 (102)
+++++...+. + -|+-|..|++.++-.++.++|+.
T Consensus 17 ld~~a~~~g~-~-RSE~Ir~Ai~~~~~~~~~~~~~~ 50 (60)
T PHA01748 17 LDRYAIKHGL-N-RSEAIRKAIEKMVKDELKKETVP 50 (60)
T ss_pred HHHHHHHhCC-C-HHHHHHHHHHHHHHHHHHhcccc
Confidence 4456766665 3 78999999999998888888864
No 59
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=28.43 E-value=1.6e+02 Score=23.31 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhHHHHhHhh---------cCCCCcchHHHHHHHHhhcch--hHHHHHHh
Q 041086 42 KSILILESRARHNIFEEFARY---------KKKPMITSWEIQTVGRLVLPG--ELVKHIVS 91 (102)
Q Consensus 42 kAm~ImnSfv~nDiFerLa~~---------~kr~TltsreIQtAvrLlLPG--ELaKhAvs 91 (102)
+..++ ..++ .|+||-+++| |--.-||..|+..|.|-.|-. ..|.+|+.
T Consensus 153 ~~~~~-~~~~-e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p 211 (262)
T PF14500_consen 153 QEFDI-SEFA-EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFP 211 (262)
T ss_pred Hhccc-chhH-HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHH
Confidence 44454 7778 9999997766 233469999999999999874 67777764
No 60
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=27.98 E-value=1.7e+02 Score=22.73 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=19.1
Q ss_pred hHhhcCCCCcchHHHHHHHHh
Q 041086 59 FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrL 79 (102)
-|+--+|.||+-.||-.|+--
T Consensus 78 kC~~EkRKTIngdDllwAm~t 98 (168)
T KOG0869|consen 78 KCQREKRKTINGDDLLWAMST 98 (168)
T ss_pred HHHHHhcCcccHHHHHHHHHH
Confidence 889999999999999999864
No 61
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=27.20 E-value=1.1e+02 Score=21.57 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHH--HHHHHHHHhhhhhHHHH-hHhhc
Q 041086 29 IKTYKIYIFKVLN--KSILILESRARHNIFEE-FARYK 63 (102)
Q Consensus 29 ~esy~~YI~KVLK--kAm~ImnSfv~nDiFer-La~~~ 63 (102)
-+.|+.||.+.|. --.+-|-+..++|+.++ ++.-|
T Consensus 8 L~af~~yi~ktl~P~yIl~~m~~~~~~e~v~~I~aEe~ 45 (89)
T cd08816 8 LQRFRDYIKKILRPSYILGFMTTWLEDEEVERILSEEE 45 (89)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4679999999999 66777888887888888 77666
No 62
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.56 E-value=77 Score=30.61 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=31.9
Q ss_pred hHHHHHHHHHH------HHHHHHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHHh
Q 041086 31 TYKIYIFKVLN------KSILILESRARHNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIVS 91 (102)
Q Consensus 31 sy~~YI~KVLK------kAm~ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKhAvs 91 (102)
.|+.-|..||+ .=|=.++++| .|-+|+|+-++-| ||..||++
T Consensus 1016 ~f~DaV~~VLR~~~IkPHWMFaLdnli------------------~rAVqaAitIl~P-el~~~~~~ 1063 (1226)
T KOG4279|consen 1016 HFSDAVQPVLRRHDIKPHWMFALDNLI------------------TRAVQAAITILSP-ELSLEAVS 1063 (1226)
T ss_pred cchHHHHHHHHhcCCChhHHHHHHHHH------------------HHHHHHHHhhcCc-cccccccC
Confidence 35556666776 5566677776 7899999998777 89998886
No 63
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=23.50 E-value=1.1e+02 Score=27.05 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=39.7
Q ss_pred hHHHHHHHHHH-HHHHHHH-HhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHH
Q 041086 31 TYKIYIFKVLN-KSILILE-SRARHNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIV 90 (102)
Q Consensus 31 sy~~YI~KVLK-kAm~Imn-Sfv~nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKhAv 90 (102)
.|..+.+|--. -++.-.+ -++ +||.+||+.+++-.+||..||++. --+.-=|+|-+-+
T Consensus 214 ~~k~~~~k~t~~~~~~~~~~~~l-~~I~~rl~k~~~~~nLt~~Di~~l-f~~C~yE~a~~~~ 273 (467)
T KOG1382|consen 214 KWKTDVNKTTDDILEKFLTEPYL-NPIAKRLNKRNDLLNLTNADISSL-FFWCAYEIALKGY 273 (467)
T ss_pred chhccccccchHHHHHHhcchhh-HHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHHHhcCC
Confidence 44555554111 4455556 567 899999999999999999999954 4455556666554
No 64
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=23.47 E-value=63 Score=28.64 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=24.9
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
+|-.+.+..++..||+.|+.|+|+.-+
T Consensus 229 ~AaL~Gr~~V~~~dv~~Aa~lvL~hR~ 255 (584)
T PRK13406 229 AAALAGRTAVEEEDLALAARLVLAPRA 255 (584)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhhc
Confidence 889999999999999999999998654
No 65
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=23.21 E-value=66 Score=21.75 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=5.6
Q ss_pred HHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 46 ILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 46 ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
|+..+| .|+..+ +|...++..|+..||-.++|
T Consensus 31 iv~~~i-~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 31 IVREYI-IELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp HHHHHH-HHHHHHHHC--------------------
T ss_pred HHHHHH-HHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 344444 455554 77777788999999988877
No 66
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.64 E-value=1.4e+02 Score=27.20 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.3
Q ss_pred hHhhcCCCCcchHHHHHHHHhh
Q 041086 59 FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLl 80 (102)
+++..+|.++|..||..|.|.+
T Consensus 55 fm~hskR~kLtv~DV~~ALr~~ 76 (576)
T KOG2549|consen 55 FMVHSKRTKLTVDDVDYALRSL 76 (576)
T ss_pred HhhcCCCCcCcHHHHHHHHhhc
Confidence 8899999999999999999864
No 67
>PF15302 P33MONOX: P33 mono-oxygenase
Probab=22.64 E-value=60 Score=27.07 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHH-HHHH-HHHHhhhh------hHHHH-----hHhhcCCCCcchHHHHH
Q 041086 39 VLN-KSIL-ILESRARH------NIFEE-----FARYKKKPMITSWEIQT 75 (102)
Q Consensus 39 VLK-kAm~-ImnSfv~n------DiFer-----La~~~kr~TltsreIQt 75 (102)
|+| ||-+ ||||+|-. ..||. =+.|+-+.-||+.|..-
T Consensus 83 VVKAKATsviMnSLiTKQTqEsiq~FEqqAGL~dagYtPHkGLtaEEtky 132 (294)
T PF15302_consen 83 VVKAKATSVIMNSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTAEETKY 132 (294)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCcccccccc
Confidence 555 8888 99999832 33777 46888889999988653
No 68
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=22.05 E-value=1.4e+02 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHhhhhhHHHHhHhh
Q 041086 30 KTYKIYIFKVLN-------KSILILESRARHNIFEEFARY 62 (102)
Q Consensus 30 esy~~YI~KVLK-------kAm~ImnSfv~nDiFerLa~~ 62 (102)
++=.-|..|||| +-++-.++|+ .||+.|..|
T Consensus 161 dsA~Fy~NRVLke~K~kd~~hveWvks~~--~l~~~L~~Y 198 (312)
T PF01213_consen 161 DSAQFYTNRVLKEYKEKDPKHVEWVKSFK--ALLKELQAY 198 (312)
T ss_dssp HHHHHHHHHHHHHHTTT-HHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHhHHHHHhhhccchhHHHHHHHH--HHHHHHHHH
Confidence 344569999999 6777888886 677776555
No 69
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=22.04 E-value=1.4e+02 Score=19.69 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=25.9
Q ss_pred hhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHHhhhhh
Q 041086 53 HNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIVSEGTK 95 (102)
Q Consensus 53 nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKhAvseGtk 95 (102)
.|+.++++. ++++|..|++.++..++ ++...++.+|-+
T Consensus 6 ~el~~~ia~---~~~~s~~~v~~vl~~~~--~~i~~~L~~g~~ 43 (99)
T PRK00285 6 ADLAEALFE---KVGLSKREAKELVELFF--EEIRDALENGEQ 43 (99)
T ss_pred HHHHHHHHH---HhCcCHHHHHHHHHHHH--HHHHHHHHcCCe
Confidence 455555554 46788899999888776 556666666643
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=21.92 E-value=2e+02 Score=19.75 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHH
Q 041086 46 ILESRARHNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVK 87 (102)
Q Consensus 46 ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaK 87 (102)
.|.++| ++|.+-| .++.||+-.|.+.=+.-=||.-|..
T Consensus 6 ai~~lI--~~FhkYa--G~~~tLsk~Elk~Ll~~Elp~~l~~ 43 (91)
T cd05024 6 SMEKMM--LTFHKFA--GEKNYLNRDDLQKLMEKEFSEFLKN 43 (91)
T ss_pred HHHHHH--HHHHHHc--CCCCcCCHHHHHHHHHHHhHHHHcC
Confidence 456666 7888866 5667999999999988888877664
No 71
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.77 E-value=2.6e+02 Score=20.11 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhc
Q 041086 36 IFKVLNKSILILESRARHNIFEEFARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 36 I~KVLKkAm~ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLlL 81 (102)
+-+|+...=.||++|- ++++++|..-. .+..+.-..++.||
T Consensus 126 f~~v~~eve~ii~~~r-~~l~~~L~~~~----~s~~~~~~~i~~Ll 166 (182)
T PF15469_consen 126 FQKVWSEVEKIIEEFR-EKLWEKLLSPP----SSQEEFLKLIRKLL 166 (182)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCC----CCHHHHHHHHHHHH
Confidence 3444447777888888 88898877665 67777888888776
No 72
>PLN00064 photosystem II protein Psb27; Provisional
Probab=21.60 E-value=1.9e+02 Score=22.35 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=25.4
Q ss_pred hHhhcCCCCc----chHHHHHHHHhhcchhHHHHHHhhh
Q 041086 59 FARYKKKPMI----TSWEIQTVGRLVLPGELVKHIVSEG 93 (102)
Q Consensus 59 La~~~kr~Tl----tsreIQtAvrLlLPGELaKhAvseG 93 (102)
+++|....++ |=+.+|||+. -|+-|=.|.|
T Consensus 105 vSrYRr~~~v~Gl~SFttMyTALN-----aLAGHY~Sfg 138 (166)
T PLN00064 105 VAKYRREKALLGRPSFRDMYSALN-----AVSGHYISFG 138 (166)
T ss_pred HHHhcCCCcccCcccHHHHHHHHH-----HHHHHhhccC
Confidence 4899999998 8899999998 6777877776
No 73
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.33 E-value=1.7e+02 Score=17.41 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=19.8
Q ss_pred HhhhhhHHHHhHhhcCCCCcchHHHHHH
Q 041086 49 SRARHNIFEEFARYKKKPMITSWEIQTV 76 (102)
Q Consensus 49 Sfv~nDiFerLa~~~kr~TltsreIQtA 76 (102)
..+ .|.-|++|+-++...||...++.|
T Consensus 18 ~~~-r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 18 KKL-RDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHH-HHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred HHH-HHHHHHHHHHcCCCeECHHHHHhh
Confidence 444 566777999999999999988776
No 74
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=21.17 E-value=68 Score=20.38 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=13.8
Q ss_pred CcchHHHHHHHHhhcc
Q 041086 67 MITSWEIQTVGRLVLP 82 (102)
Q Consensus 67 TltsreIQtAvrLlLP 82 (102)
.+|..|||..|...|=
T Consensus 55 ~is~~eI~~~v~~~L~ 70 (90)
T PF03477_consen 55 EISTEEIQDIVENALM 70 (90)
T ss_dssp TEEHHHHHHHHHHHHH
T ss_pred CeeHHHHHHHHHHHHH
Confidence 8999999999986654
No 75
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=21.01 E-value=1.4e+02 Score=22.68 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------hhhhHHHHhHhhcCCC----CcchHHHHHHHHhhcc
Q 041086 31 TYKIYIFKVLNKSILILESR---------ARHNIFEEFARYKKKP----MITSWEIQTVGRLVLP 82 (102)
Q Consensus 31 sy~~YI~KVLKkAm~ImnSf---------v~nDiFerLa~~~kr~----TltsreIQtAvrLlLP 82 (102)
+...|.|-+-.+=..|+-.- + .|+ ++.||+.+ .||+.||..|+.++=|
T Consensus 87 ~~~~f~~ELa~qi~e~c~~~~~~~GGii~L-~dl---~~~~nr~R~g~~lISp~Di~~A~~~l~~ 147 (223)
T PF04157_consen 87 GSGDFYYELAVQIAEVCLATRSKNGGIISL-SDL---YCRYNRARGGSELISPEDILRACKLLEV 147 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCTTTSEEEH-HHH---HHHHHHCTTTSST--HHHHHHHHHHHCC
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCEEEH-HHH---HHHHHHhcccCCCcCHHHHHHHHHHHHH
Confidence 56677777776555554432 1 233 45555555 9999999999998754
No 76
>COG2952 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=3.9e+02 Score=20.91 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHH
Q 041086 42 KSILILESRARHNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKH 88 (102)
Q Consensus 42 kAm~ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKh 88 (102)
-+..|-.++= +.+.|++.+|..+...+|.|-|--..-+.-.||-|.
T Consensus 135 ~yLKIyE~iE-~eV~ekIk~Ykrkl~~GS~Ey~liferlYeeELrKk 180 (183)
T COG2952 135 TYLKIYESIE-NEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRKK 180 (183)
T ss_pred HHHHHHHHHH-HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHc
Confidence 5666777777 778888999999999999999998888888888764
No 77
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=20.58 E-value=2.3e+02 Score=26.08 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhhhHHHHhHh----------------------hcCCCCcchHHHHHHHHhhcchhHHHHHHhhhhhhhhc
Q 041086 42 KSILILESRARHNIFEEFAR----------------------YKKKPMITSWEIQTVGRLVLPGELVKHIVSEGTKAVTK 99 (102)
Q Consensus 42 kAm~ImnSfv~nDiFerLa~----------------------~~kr~TltsreIQtAvrLlLPGELaKhAvseGtkAv~k 99 (102)
-|-.+..+.. -|.||.|+. ...-..|+.+.|...++++.-|+++|.|+.|-.+++..
T Consensus 473 LA~~~~~~~~-~~~FEel~e~~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~g~iake~iee~l~~l~~ 551 (631)
T COG2511 473 LAEQLASDPR-VDLFEELVEKGVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSEGKIAKEAIEEILKALAE 551 (631)
T ss_pred HHHHHHhhhh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Confidence 6777777777 888988222 12333489999999999999999999999999888764
No 78
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.55 E-value=61 Score=20.12 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=14.5
Q ss_pred CCCCcchHHHHHHHHhhcchhHH
Q 041086 64 KKPMITSWEIQTVGRLVLPGELV 86 (102)
Q Consensus 64 kr~TltsreIQtAvrLlLPGELa 86 (102)
....||..|+..+++.++.|++.
T Consensus 11 ~g~~Ls~~e~~~~~~~i~~g~~s 33 (66)
T PF02885_consen 11 DGEDLSREEAKAAFDAILDGEVS 33 (66)
T ss_dssp TT----HHHHHHHHHHHHTTSS-
T ss_pred cCCCCCHHHHHHHHHHHHcCCCC
Confidence 33788888888888888888754
No 79
>PF12412 DUF3667: Protein of unknown function (DUF3667); InterPro: IPR022134 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=20.42 E-value=82 Score=18.86 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=14.1
Q ss_pred HHHHHHhhc-chhHHHHHHh
Q 041086 73 IQTVGRLVL-PGELVKHIVS 91 (102)
Q Consensus 73 IQtAvrLlL-PGELaKhAvs 91 (102)
..|...|++ ||++.+.=++
T Consensus 5 ~rTl~~L~~rPG~~~~~Yi~ 24 (46)
T PF12412_consen 5 FRTLRDLLLRPGEVTREYIE 24 (46)
T ss_pred HHHHHHHHhCHHHHHHHHHc
Confidence 456777888 9999886553
No 80
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=20.22 E-value=95 Score=20.93 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=22.6
Q ss_pred HHHHHhhhhhHHHH-----hHhhcCCCCcchHHHHHHHHh
Q 041086 45 LILESRARHNIFEE-----FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 45 ~ImnSfv~nDiFer-----La~~~kr~TltsreIQtAvrL 79 (102)
..+.+|+ +++|+- ++.+-....+|..||+.--++
T Consensus 74 ~~~~~~l-~~~~~gs~~~l~~~l~~~~~ls~~el~~L~~l 112 (115)
T PF03965_consen 74 QELRQFL-DRLFDGSIPQLVAALVESEELSPEELEELRKL 112 (115)
T ss_dssp HHHHHHH-HHHSTTHHHHHHHHHHHCT-S-HHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4566777 777654 778877789999999865443
No 81
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.16 E-value=1.7e+02 Score=19.16 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=23.0
Q ss_pred hHHHHhHhhcCC-CCcchHHHHHHHHhhcch
Q 041086 54 NIFEEFARYKKK-PMITSWEIQTVGRLVLPG 83 (102)
Q Consensus 54 DiFerLa~~~kr-~TltsreIQtAvrLlLPG 83 (102)
.+|...+.-++. .+||..|++..++-.+|+
T Consensus 14 ~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~ 44 (93)
T cd05026 14 RIFHNYSGKEGDRYKLSKGELKELLQRELTD 44 (93)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHhHH
Confidence 667777766565 489999999999776654
Done!