Query 041086
Match_columns 102
No_of_seqs 103 out of 318
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 5.3E-45 1.8E-49 263.3 6.2 83 19-102 25-124 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 7.6E-45 2.6E-49 261.6 6.3 83 19-102 22-121 (123)
3 2jss_A Chimera of histone H2B. 100.0 9.2E-31 3.1E-35 196.2 7.0 73 28-101 1-90 (192)
4 3b0c_W CENP-W, centromere prot 98.6 5.2E-08 1.8E-12 63.1 5.3 48 34-82 8-72 (76)
5 1b67_A Protein (histone HMFA); 97.5 0.00022 7.5E-09 44.4 5.5 38 42-80 23-67 (68)
6 1f1e_A Histone fold protein; a 97.5 0.00015 5.1E-09 53.2 5.4 47 36-82 88-149 (154)
7 1tzy_D Histone H4-VI; histone- 96.4 0.007 2.4E-07 40.8 5.7 47 33-80 32-94 (103)
8 1ku5_A HPHA, archaeal histon; 96.4 0.0074 2.5E-07 37.8 5.3 35 43-78 32-69 (70)
9 2yfw_B Histone H4, H4; cell cy 96.4 0.0076 2.6E-07 40.8 5.6 46 34-80 33-94 (103)
10 2f8n_G Core histone macro-H2A. 95.7 0.02 6.7E-07 40.1 5.5 44 34-78 26-86 (120)
11 1id3_C Histone H2A.1; nucleoso 95.7 0.02 6.9E-07 40.6 5.5 44 34-78 29-89 (131)
12 2nqb_C Histone H2A; nucleosome 95.6 0.026 9.1E-07 39.6 5.7 44 34-78 27-87 (123)
13 1tzy_A Histone H2A-IV; histone 95.5 0.03 1E-06 39.6 5.7 44 34-78 29-89 (129)
14 2f8n_K Histone H2A type 1; nuc 95.3 0.034 1.2E-06 40.5 5.7 44 34-78 48-108 (149)
15 1id3_B Histone H4; nucleosome 94.7 0.072 2.5E-06 36.1 5.7 47 33-80 31-93 (102)
16 1f66_C Histone H2A.Z; nucleoso 94.1 0.053 1.8E-06 38.3 3.9 44 34-78 31-92 (128)
17 2hue_C Histone H4; mini beta s 94.0 0.1 3.5E-06 33.9 5.0 38 42-80 35-75 (84)
18 3b0c_T CENP-T, centromere prot 93.6 0.15 5.2E-06 34.9 5.5 21 59-79 51-71 (111)
19 1taf_A TFIID TBP associated fa 93.5 0.28 9.6E-06 31.3 6.3 47 34-81 5-67 (68)
20 1h3o_B Transcription initiatio 93.1 0.087 3E-06 34.5 3.5 34 44-78 33-69 (76)
21 4g92_C HAPE; transcription fac 92.7 0.23 7.7E-06 34.2 5.3 31 47-78 72-105 (119)
22 3nqj_A Histone H3-like centrom 92.3 0.22 7.4E-06 33.0 4.6 31 48-79 41-74 (82)
23 2jss_A Chimera of histone H2B. 91.8 0.18 6.1E-06 37.2 4.1 33 45-78 135-170 (192)
24 2hue_B Histone H3; mini beta s 91.3 0.26 8.9E-06 32.2 4.1 32 47-79 38-72 (77)
25 1n1j_A NF-YB; histone-like PAI 91.0 0.24 8.1E-06 32.3 3.7 31 47-78 40-73 (93)
26 1jfi_A Transcription regulator 90.7 0.14 4.7E-06 34.2 2.3 32 46-78 41-75 (98)
27 1taf_B TFIID TBP associated fa 90.4 0.37 1.2E-05 31.0 4.1 21 59-79 50-70 (70)
28 1n1j_B NF-YC; histone-like PAI 90.3 0.27 9.4E-06 32.5 3.6 32 47-79 50-84 (97)
29 3nqu_A Histone H3-like centrom 90.0 0.34 1.2E-05 35.1 4.1 32 48-80 99-133 (140)
30 2yfv_A Histone H3-like centrom 89.6 0.37 1.3E-05 32.9 3.8 32 47-79 65-99 (100)
31 3r45_A Histone H3-like centrom 88.8 0.38 1.3E-05 35.4 3.7 32 47-79 114-148 (156)
32 1tzy_C Histone H3; histone-fol 88.2 0.54 1.9E-05 33.7 4.1 32 47-79 97-131 (136)
33 4dra_A Centromere protein S; D 87.4 1 3.5E-05 31.5 4.9 37 42-79 51-94 (113)
34 1f1e_A Histone fold protein; a 86.4 0.86 3E-05 33.1 4.3 33 45-78 33-68 (154)
35 3b0b_B CENP-S, centromere prot 84.7 1.7 5.8E-05 29.8 4.9 37 42-79 43-86 (107)
36 2ly8_A Budding yeast chaperone 83.6 1.6 5.3E-05 30.8 4.4 35 44-79 74-111 (121)
37 3vh5_A CENP-S; histone fold, c 82.3 2.4 8.2E-05 30.6 5.1 37 42-79 43-86 (140)
38 3v9r_A MHF1, uncharacterized p 82.1 1.7 5.7E-05 29.0 3.9 37 42-79 36-79 (90)
39 2byk_B Chrac-14; nucleosome sl 74.0 10 0.00035 26.2 6.2 30 50-80 44-76 (128)
40 2byk_A Chrac-16; nucleosome sl 70.7 3.2 0.00011 29.4 3.0 30 48-78 51-84 (140)
41 3ksy_A SOS-1, SON of sevenless 69.8 17 0.00059 32.3 8.0 65 29-97 20-94 (1049)
42 2l5a_A Histone H3-like centrom 68.3 6.8 0.00023 30.4 4.6 36 44-80 188-226 (235)
43 1jfi_B DR1 protein, transcript 67.3 14 0.00049 27.3 6.0 21 59-79 60-80 (179)
44 2l5a_A Histone H3-like centrom 49.4 12 0.00041 29.0 3.0 31 48-79 50-83 (235)
45 1dp7_P MHC class II transcript 44.7 28 0.00097 22.2 3.8 33 52-84 19-54 (76)
46 2v4x_A JSRV capsid, capsid pro 35.0 61 0.0021 23.1 4.6 17 67-83 47-63 (140)
47 4afj_X Proto-oncogene FRAT1; t 32.4 14 0.00049 20.4 0.7 14 78-91 9-22 (30)
48 3cuq_A Vacuolar-sorting protei 30.4 48 0.0016 25.3 3.7 30 53-82 98-129 (234)
49 3cuq_B Vacuolar protein-sortin 29.9 48 0.0016 24.5 3.5 51 31-82 69-128 (218)
50 1g8p_A Magnesium-chelatase 38 28.0 52 0.0018 23.7 3.4 27 59-85 301-327 (350)
51 1d6g_A CCK-A-receptor, cholecy 27.9 15 0.0005 22.1 0.3 13 69-81 35-47 (47)
52 3t98_B Nucleoporin NUP58/NUP45 26.4 85 0.0029 20.7 3.9 46 33-80 7-56 (93)
53 3ksy_A SOS-1, SON of sevenless 25.9 71 0.0024 28.4 4.4 34 44-78 131-167 (1049)
54 2kgf_A Capsid protein P27; ret 25.2 1.1E+02 0.0036 21.8 4.5 18 66-83 51-68 (140)
55 3rm1_A Protein S100-B; alpha-h 23.4 70 0.0024 19.2 2.9 31 54-84 13-44 (92)
56 3uk6_A RUVB-like 2; hexameric 23.4 1.2E+02 0.0042 22.0 4.7 41 54-94 301-344 (368)
57 1bh9_B TAFII28; histone fold, 22.6 1.1E+02 0.0037 19.9 3.8 32 49-81 48-83 (89)
58 2rg8_A Programmed cell death p 21.8 77 0.0026 22.2 3.2 22 59-81 68-89 (165)
59 3lti_A DNA-directed RNA polyme 21.2 56 0.0019 25.8 2.6 18 64-81 269-286 (296)
60 1p7n_A GAG polyprotein capsid 20.7 1.2E+02 0.004 22.4 4.1 19 65-83 74-92 (176)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=5.3e-45 Score=263.25 Aligned_cols=83 Identities=54% Similarity=0.785 Sum_probs=72.7
Q ss_pred cccccccccCchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhc
Q 041086 19 DKEMKCAKKSIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 19 ~~~kk~~kkr~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlL 81 (102)
+.++++++++.|+|++||||||| +||+|||||| |||||| |++||+|+|||+|||||||||||
T Consensus 25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfv-nDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFV-NDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 44566778899999999999999 9999999999 999999 99999999999999999999999
Q ss_pred chhHHHHHHhhhhhhhhccCC
Q 041086 82 PGELVKHIVSEGTKAVTKFTS 102 (102)
Q Consensus 82 PGELaKhAvseGtkAv~ky~s 102 (102)
||||+||||+|||+||++|++
T Consensus 104 pGELaKhAvseGtkAV~ky~s 124 (126)
T 1tzy_B 104 PGELAKHAVSEGTKAVTKYTS 124 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999974
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=7.6e-45 Score=261.56 Aligned_cols=83 Identities=54% Similarity=0.796 Sum_probs=74.4
Q ss_pred cccccccccCchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhc
Q 041086 19 DKEMKCAKKSIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 19 ~~~kk~~kkr~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlL 81 (102)
+.++++++++.|+|++||||||| +||+|||||| |||||| |++||+++|||+|||||||||||
T Consensus 22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfv-nDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFV-NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 44566778899999999999999 9999999999 999999 99999999999999999999999
Q ss_pred chhHHHHHHhhhhhhhhccCC
Q 041086 82 PGELVKHIVSEGTKAVTKFTS 102 (102)
Q Consensus 82 PGELaKhAvseGtkAv~ky~s 102 (102)
||||+||||+|||+||++|++
T Consensus 101 pGELaKhAvseGtkAV~ky~s 121 (123)
T 2nqb_D 101 PGELAKHAVSEGTKAVTKYTS 121 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999974
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.96 E-value=9.2e-31 Score=196.24 Aligned_cols=73 Identities=58% Similarity=0.851 Sum_probs=70.6
Q ss_pred CchhHHHHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhcchhHHHHHH
Q 041086 28 SIKTYKIYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVLPGELVKHIV 90 (102)
Q Consensus 28 r~esy~~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlLPGELaKhAv 90 (102)
++|+|++||||||| +||++||||| +||||| |++||+++|||++|||+||||+|||||+|||+
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v-~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av 79 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFV-NDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAV 79 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHH
Confidence 46999999999999 9999999999 999999 88999999999999999999999999999999
Q ss_pred hhhhhhhhccC
Q 041086 91 SEGTKAVTKFT 101 (102)
Q Consensus 91 seGtkAv~ky~ 101 (102)
+||++||++|+
T Consensus 80 ~eG~kAv~k~~ 90 (192)
T 2jss_A 80 SEGTRAVTKYS 90 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.62 E-value=5.2e-08 Score=63.07 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=44.2
Q ss_pred HHHHHHHH----------HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHhhcc
Q 041086 34 IYIFKVLN----------KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRLVLP 82 (102)
Q Consensus 34 ~YI~KVLK----------kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrLlLP 82 (102)
.+|+|++| .|+.+|+.++ .+++++ +|++++|.||+++||++|++.+|-
T Consensus 8 A~V~rI~K~~~p~~~is~~A~~~i~~~~-~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAANTDLLVHLSF-LLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHCTTCEECTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 46889999 9999999999 999998 888999999999999999998873
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.50 E-value=0.00022 Score=44.41 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHHHH----HhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 42 KSILILE----SRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 42 kAm~Imn----Sfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
.|+..|. .|+ .++|+. .|.+.+|.||+++|||.|++.|
T Consensus 23 ~A~~~l~~a~e~fi-~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 23 DARIALAKVLEEMG-EEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 5555444 455 666666 8899999999999999999865
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.50 E-value=0.00015 Score=53.15 Aligned_cols=47 Identities=9% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHH---------HHHHHHHHhhh---hhHHHH---hHhhcCCCCcchHHHHHHHHhhcc
Q 041086 36 IFKVLN---------KSILILESRAR---HNIFEE---FARYKKKPMITSWEIQTVGRLVLP 82 (102)
Q Consensus 36 I~KVLK---------kAm~ImnSfv~---nDiFer---La~~~kr~TltsreIQtAvrLlLP 82 (102)
|.|++| .|...|...+. .+|.+. +|++.+|.|||++||+.|++..||
T Consensus 88 V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 88 VRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 556666 44444444440 444444 999999999999999999999999
No 7
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.40 E-value=0.007 Score=40.84 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHH-------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 33 KIYIFKVLN-------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 33 ~~YI~KVLK-------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
..-|.|+++ .-..++..|+ .+|.+. ++++++|.|||.+||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~-~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGVKRISGLIYEETRGVLKVFL-ENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 356788888 4456677777 777776 9999999999999999999855
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.37 E-value=0.0074 Score=37.78 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 43 SILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 43 Am~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
-..++..|+ .++++. .|.+.+|.||+.+||+.|++
T Consensus 32 l~e~~~~~~-~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 32 LAEYLEEYA-IEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 345666777 778777 89999999999999999986
No 9
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.36 E-value=0.0076 Score=40.75 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHHH-------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 34 IYIFKVLN-------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 34 ~YI~KVLK-------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
.-|.|+++ .-..++.-|+ .+|.+. ++++++|.|||++||+.|++-+
T Consensus 33 ~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~-~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGVKRISGLIYEEVRNVLKTFL-ESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTCCEECTTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 45778888 4456677777 777666 9999999999999999999965
No 10
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.74 E-value=0.02 Score=40.09 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHH--------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLN--------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLK--------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|+|.|+ ---.+|.-|. .+|+|. .|+.+++.+||+++||-|++
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~-aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLT-AEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHH-HHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 46888888 2235788888 899998 89999999999999999998
No 11
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.69 E-value=0.02 Score=40.62 Aligned_cols=44 Identities=30% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHH--------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLN--------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLK--------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|+|+|+ ---.+|.-|. .+|+|. .|+.+++.+|++++||-||+
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~-aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLA-AEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHH-HHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 57889999 2345788888 999998 88999999999999999998
No 12
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.57 E-value=0.026 Score=39.57 Aligned_cols=44 Identities=27% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHH--------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLN--------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLK--------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|+|+|+ ---.+|.-|. .+|+|. .|+.+++.+||+++||-|++
T Consensus 27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~-aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA-AEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 57899998 2245788888 888888 88999999999999999998
No 13
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.46 E-value=0.03 Score=39.63 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHHH--------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLN--------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLK--------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|+|+|+ ---.+|.-|. .+|+|. .|+.+++.+|++++||-|++
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~-aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT-AEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46889999 2345788888 899998 88999999999999999998
No 14
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.31 E-value=0.034 Score=40.52 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=38.2
Q ss_pred HHHHHHHH--------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLN--------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLK--------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|+|+|+ ---.+|.-|. .+|+|. .|+.+++.+|++++||-||+
T Consensus 48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~-aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT-AEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccCcCcHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 46889999 2345788888 899998 89999999999999999998
No 15
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=94.73 E-value=0.072 Score=36.07 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHHHH-------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 33 KIYIFKVLN-------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 33 ~~YI~KVLK-------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
...|.|+.+ .-..++..|+ .+|-+. ++++.+|.|||..||..|++-+
T Consensus 31 ~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi-~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGVKRISGLIYEEVRAVLKSFL-ESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCchhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 445788888 4445566666 666555 8999999999999999999854
No 16
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.06 E-value=0.053 Score=38.31 Aligned_cols=44 Identities=27% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHHHH---------------HHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 34 IYIFKVLNK---------------SILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 34 ~YI~KVLKk---------------Am~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..|.|.|++ --.+|.-|. .+|+|. .|+.+++.+||+++||-||+
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~-aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLT-AEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHH-HHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 467888871 245788888 899998 89999999999999999998
No 17
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=94.02 E-value=0.1 Score=33.87 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 42 KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
.-..++..|+ .+|-+. ++++.+|.|||..||..|++-+
T Consensus 35 ~l~~~l~~~~-~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 35 ETRGVLKVFL-ENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3445666677 666666 9999999999999999998854
No 18
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=93.58 E-value=0.15 Score=34.90 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=19.6
Q ss_pred hHhhcCCCCcchHHHHHHHHh
Q 041086 59 FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrL 79 (102)
+|++.+|.||+..||..|++-
T Consensus 51 ~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 51 YSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHHHH
Confidence 899999999999999999874
No 19
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=93.48 E-value=0.28 Score=31.29 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHHH-------------HHHHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhhc
Q 041086 34 IYIFKVLN-------------KSILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 34 ~YI~KVLK-------------kAm~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLlL 81 (102)
.-|.++|+ +=|.++.-++ .+|.+. ++.+.+|.||+..||+-|++..+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~-~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYV-TSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 34677777 3344444555 566555 99999999999999999987543
No 20
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.14 E-value=0.087 Score=34.51 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..+.+.|| +|+.+. ||.+.+..||..+|||-...
T Consensus 33 l~lADdFV-~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 33 LQIADDFI-ESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 46889999 999888 99999999999999997543
No 21
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=92.67 E-value=0.23 Score=34.24 Aligned_cols=31 Identities=10% Similarity=0.032 Sum_probs=27.0
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
+.-|| .++.++ .|+-++|.||+.+||+.||+
T Consensus 72 ~E~Fi-~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 72 CDVFI-TELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 45677 888887 88999999999999999996
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=92.28 E-value=0.22 Score=33.01 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|. -++||- +|.+.+|.||.++|||-|.|+
T Consensus 41 E~yl-v~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 41 EAFL-VHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp HHHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 5677 789998 889999999999999999996
No 23
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.77 E-value=0.18 Score=37.23 Aligned_cols=33 Identities=27% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.+|.-|. .+|+|. .|+.+++.+|++++||-|++
T Consensus 135 avLEyl~-~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 135 AVLEYLT-AEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 5788888 888888 88999999999999999998
No 24
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=91.28 E-value=0.26 Score=32.24 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
...|. -++||. +|.+.+|.||.++|||-|.|+
T Consensus 38 ~Eayl-v~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 38 SEAYL-VALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 35567 788998 899999999999999999985
No 25
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=90.99 E-value=0.24 Score=32.32 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=26.7
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..-|+ ..+++. .|...+|.||+..||+.|++
T Consensus 40 ~e~Fi-~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 40 VSEFI-SFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34577 777777 88999999999999999998
No 26
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=90.65 E-value=0.14 Score=34.19 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 46 ILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 46 ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
++.-|+ .++.+. .++.+++.||+.+||+.||+
T Consensus 41 a~E~Fi-~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 41 ALELFL-ESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHH-HHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 355688 888888 88899999999999999987
No 27
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.38 E-value=0.37 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=19.1
Q ss_pred hHhhcCCCCcchHHHHHHHHh
Q 041086 59 FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrL 79 (102)
++++.+|.|||..||..|+++
T Consensus 50 fmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 50 FMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHcCCCeecHHHHHHHHcC
Confidence 899999999999999999874
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=90.31 E-value=0.27 Score=32.50 Aligned_cols=32 Identities=6% Similarity=-0.049 Sum_probs=26.9
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
+.-|+ .++.++ .|+.++|.||+.+||+.||+-
T Consensus 50 ~E~Fi-~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 50 AQIFI-TELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 45577 777777 788899999999999999873
No 29
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=89.99 E-value=0.34 Score=35.06 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
..|+ -++||- +|.+.+|-||..+|||-|.|+-
T Consensus 99 EayL-v~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 99 EAFL-VHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 5778 899999 8899999999999999999963
No 30
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=89.58 E-value=0.37 Score=32.87 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
...|+ -++||- +|.+.+|-||.++|||-|.|+
T Consensus 65 aEayL-v~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 65 SEAYL-VGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 34567 788998 899999999999999999885
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=88.84 E-value=0.38 Score=35.43 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
...|+ -++||- +|.+.+|.||..+|||-|.|+
T Consensus 114 aEayL-V~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 114 AEAFL-VHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 35778 899999 889999999999999999996
No 32
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=88.21 E-value=0.54 Score=33.67 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 47 LESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 47 mnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
...|+ -++||. +|.+.+|-||.++|||-|.|+
T Consensus 97 aEayL-v~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 97 SEAYL-VGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 45577 788998 899999999999999999985
No 33
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=87.37 E-value=1 Score=31.47 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHh
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrL 79 (102)
.++..|.-++ .+.++. +|++.+|.||+..||.-++|-
T Consensus 51 ~ai~aL~El~-~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 51 QTIAAISELT-FRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 6667777777 666666 889999999999999999883
No 34
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=86.42 E-value=0.86 Score=33.06 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 45 LILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 45 ~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
.++..|+ ..|-.. +|.+.+|.||+..||..|+.
T Consensus 33 ~~l~~f~-~~i~~~A~~~a~ha~RKTv~a~DV~~a~~ 68 (154)
T 1f1e_A 33 DFVPTMA-EYVANAAKSVLDASGKKTLMEEHLKALAD 68 (154)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3455555 555554 99999999999999999994
No 35
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=84.73 E-value=1.7 Score=29.83 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHh
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrL 79 (102)
+++..|.-|+ .+.++. +|++.+|.||+..||.-|+|-
T Consensus 43 ~~i~aL~E~~-~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 43 QTVAAISEIT-FRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 5666666666 555555 889999999999999999985
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=83.60 E-value=1.6 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
-.+++.|. .+|-.. ++.+.+|.|+|+.||--|++.
T Consensus 74 r~vl~~~l-~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 74 RAVLKSFL-ESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 45677777 666666 899999999999999988873
No 37
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=82.33 E-value=2.4 Score=30.65 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHh
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrL 79 (102)
.++..|--++ .+.++. +|++.+|.||+..||.-++|-
T Consensus 43 ~ai~aL~El~-~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 43 QTVAAISEIT-FRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 6777777777 777766 889999999999999999884
No 38
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=82.12 E-value=1.7 Score=29.04 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhHHHH-------hHhhcCCCCcchHHHHHHHHh
Q 041086 42 KSILILESRARHNIFEE-------FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 42 kAm~ImnSfv~nDiFer-------La~~~kr~TltsreIQtAvrL 79 (102)
.++..|--++ .+.++. +|++.+|.||+..||.-++|-
T Consensus 36 ~~i~aL~e~~-~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 36 RFINSLLELA-YLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5566666666 555555 889999999999999998874
No 39
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=74.03 E-value=10 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=24.2
Q ss_pred hhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 50 RARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 50 fv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
|| ..|-.. +|...+|.||+..||..|+.-+
T Consensus 44 FI-~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 44 FA-IFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HH-HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 55 555444 8889999999999999999754
No 40
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=70.67 E-value=3.2 Score=29.38 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=24.6
Q ss_pred HHhhhhhHHHH---hH-hhcCCCCcchHHHHHHHH
Q 041086 48 ESRARHNIFEE---FA-RYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 48 nSfv~nDiFer---La-~~~kr~TltsreIQtAvr 78 (102)
.-|| ..+.++ .| +-++|.||+.++|..||.
T Consensus 51 ElFI-~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 51 ELFV-RHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp HHHH-HHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 3466 666666 66 789999999999999996
No 41
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=69.84 E-value=17 Score=32.33 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHH----------HHHHHHHHhhhhhHHHHhHhhcCCCCcchHHHHHHHHhhcchhHHHHHHhhhhhhh
Q 041086 29 IKTYKIYIFKVLN----------KSILILESRARHNIFEEFARYKKKPMITSWEIQTVGRLVLPGELVKHIVSEGTKAV 97 (102)
Q Consensus 29 ~esy~~YI~KVLK----------kAm~ImnSfv~nDiFerLa~~~kr~TltsreIQtAvrLlLPGELaKhAvseGtkAv 97 (102)
+.-|-.-|+||+. .|..-+++++ --+.-.||. ....|..|++.+|.-.+|++|.++|+.++-.|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELI-LQLLNMLCQ---AQPRSASDVEERVQKSFPHPIDKWAIADAQSAI 94 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHH-HHHHHHHHH---TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHH-HHHHHHHhc---CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 4567778999999 9999999999 888888886 888899999999999999999999999986653
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=68.30 E-value=6.8 Score=30.39 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHhh
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvrLl 80 (102)
-.++..|. .+|-.. ++.+.+|.|+|+.||--|++..
T Consensus 188 r~vLe~fl-e~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 188 RAVLKSFL-ESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 35666666 666555 8999999999999999998854
No 43
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=67.28 E-value=14 Score=27.28 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=19.4
Q ss_pred hHhhcCCCCcchHHHHHHHHh
Q 041086 59 FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrL 79 (102)
+|...+|.||+..||-.|+.-
T Consensus 60 ~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 60 ICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHHHh
Confidence 889999999999999999873
No 44
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=49.43 E-value=12 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHhhhhhHHHH---hHhhcCCCCcchHHHHHHHHh
Q 041086 48 ESRARHNIFEE---FARYKKKPMITSWEIQTVGRL 79 (102)
Q Consensus 48 nSfv~nDiFer---La~~~kr~TltsreIQtAvrL 79 (102)
..|+ -++||- .|.+.+|-||.++|||=|.|+
T Consensus 50 EayL-V~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 50 EAYL-VGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp HHHH-HHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred HHHH-HHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 3466 688998 789999999999999999985
No 45
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=44.73 E-value=28 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=29.1
Q ss_pred hhhHHHH---hHhhcCCCCcchHHHHHHHHhhcchh
Q 041086 52 RHNIFEE---FARYKKKPMITSWEIQTVGRLVLPGE 84 (102)
Q Consensus 52 ~nDiFer---La~~~kr~TltsreIQtAvrLlLPGE 84 (102)
|++||++ .+.-++-..+++-..-.-+|.++|+-
T Consensus 19 R~~vY~~Y~~~C~~~~~~pl~~a~FGK~ir~~FP~l 54 (76)
T 1dp7_P 19 RSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGL 54 (76)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHCCCc
Confidence 6788888 77788889999999999999999983
No 46
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=34.97 E-value=61 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=15.9
Q ss_pred CcchHHHHHHHHhhcch
Q 041086 67 MITSWEIQTVGRLVLPG 83 (102)
Q Consensus 67 TltsreIQtAvrLlLPG 83 (102)
-||+.|.++-+|-+|+|
T Consensus 47 ~LtP~DW~~lara~Ls~ 63 (140)
T 2v4x_A 47 ALPPNDWKQTARACLSG 63 (140)
T ss_dssp CCCHHHHHHHHHHHSCH
T ss_pred CCChHHHHHHHHHHcCc
Confidence 49999999999999997
No 47
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=32.43 E-value=14 Score=20.42 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=11.5
Q ss_pred HhhcchhHHHHHHh
Q 041086 78 RLVLPGELVKHIVS 91 (102)
Q Consensus 78 rLlLPGELaKhAvs 91 (102)
.|++||-|.+.||.
T Consensus 9 qLl~~G~likeAvr 22 (30)
T 4afj_X 9 QLVLSGNLIKEAVR 22 (30)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHccchHHHHHH
Confidence 46889999998875
No 48
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.41 E-value=48 Score=25.25 Aligned_cols=30 Identities=3% Similarity=0.067 Sum_probs=21.5
Q ss_pred hhHHHHhHhhcCC--CCcchHHHHHHHHhhcc
Q 041086 53 HNIFEEFARYKKK--PMITSWEIQTVGRLVLP 82 (102)
Q Consensus 53 nDiFerLa~~~kr--~TltsreIQtAvrLlLP 82 (102)
.|++.++-+-... ..||..||..|+..|=|
T Consensus 98 ~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~ 129 (234)
T 3cuq_A 98 EELHQQVLKGRGKFAQDVSQDDLIRAIKKLKA 129 (234)
T ss_dssp HHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCccCccCHHHHHHHHHHHHh
Confidence 4555555444443 78999999999998754
No 49
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=29.90 E-value=48 Score=24.50 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------hhhhHHHHhHhhcCCCCcchHHHHHHHHhhcc
Q 041086 31 TYKIYIFKVLNKSILILESR---------ARHNIFEEFARYKKKPMITSWEIQTVGRLVLP 82 (102)
Q Consensus 31 sy~~YI~KVLKkAm~ImnSf---------v~nDiFerLa~~~kr~TltsreIQtAvrLlLP 82 (102)
+-+.|.|.+-.+-..|+-.- + .|+|.++-+..+..-||+.||..|+.++=|
T Consensus 69 s~~~f~~ELa~qi~e~c~~~~~~~GG~I~L-~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~ 128 (218)
T 3cuq_B 69 SGTQYHMQLAKQLAGILQVPLEERGGIMSL-TEVYCLVNRARGMELLSPEDLVNACKMLEA 128 (218)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTSEEEH-HHHHHHHHHTCSSSCCCHHHHHHHHHTTTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCeEEH-HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 34677777766544444332 2 355555555555566999999999998754
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=27.95 E-value=52 Score=23.65 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred hHhhcCCCCcchHHHHHHHHhhcchhH
Q 041086 59 FARYKKKPMITSWEIQTVGRLVLPGEL 85 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlLPGEL 85 (102)
+|....+.+|+..+|..|+.++|+.-+
T Consensus 301 ~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 301 LAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 566688889999999999999987655
No 51
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=27.92 E-value=15 Score=22.14 Aligned_cols=13 Identities=31% Similarity=0.235 Sum_probs=11.5
Q ss_pred chHHHHHHHHhhc
Q 041086 69 TSWEIQTVGRLVL 81 (102)
Q Consensus 69 tsreIQtAvrLlL 81 (102)
.++|.|-|||++|
T Consensus 35 ~~kE~~~aVrIlL 47 (47)
T 1d6g_A 35 PSKEWQPAQVILL 47 (47)
T ss_dssp SCSSHHHHHHSCC
T ss_pred CchhhChhheeeC
Confidence 6799999999886
No 52
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.36 E-value=85 Score=20.66 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHHH---HHHHHHHHhhhhhHHHH-hHhhcCCCCcchHHHHHHHHhh
Q 041086 33 KIYIFKVLN---KSILILESRARHNIFEE-FARYKKKPMITSWEIQTVGRLV 80 (102)
Q Consensus 33 ~~YI~KVLK---kAm~ImnSfv~nDiFer-La~~~kr~TltsreIQtAvrLl 80 (102)
..|+-++.. +-|.....-| +-+|+ |..-++.+++|+.+|..+++-+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~I--eelE~~L~s~s~~~~~Tpq~L~~~l~~~ 56 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQI--EELENHLATQANNSHITPQDLSMAMQKI 56 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 456655555 4444444444 44566 5555677899999999888743
No 53
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=25.89 E-value=71 Score=28.45 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhHHHH---hHhhcCCCCcchHHHHHHHH
Q 041086 44 ILILESRARHNIFEE---FARYKKKPMITSWEIQTVGR 78 (102)
Q Consensus 44 m~ImnSfv~nDiFer---La~~~kr~TltsreIQtAvr 78 (102)
..||.-+. .+|+|- -++.+++..||+|+||-|++
T Consensus 131 ~avleyl~-~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 131 VAVLEYIS-ADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcCCceecCcccccccc
Confidence 35677777 888886 78899999999999999996
No 54
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=25.22 E-value=1.1e+02 Score=21.82 Aligned_cols=18 Identities=33% Similarity=0.387 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHhhcch
Q 041086 66 PMITSWEIQTVGRLVLPG 83 (102)
Q Consensus 66 ~TltsreIQtAvrLlLPG 83 (102)
.-||+.|.++-+|-+|+|
T Consensus 51 ~~LtP~DW~~lara~Ls~ 68 (140)
T 2kgf_A 51 NWLTPTDWNTLVRAVLSG 68 (140)
T ss_dssp SBCCHHHHHHHHHHHCCS
T ss_pred CCCChHHHHHHHHHHcCc
Confidence 559999999999999986
No 55
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=23.43 E-value=70 Score=19.16 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=21.6
Q ss_pred hHHHHhHhhc-CCCCcchHHHHHHHHhhcchh
Q 041086 54 NIFEEFARYK-KKPMITSWEIQTVGRLVLPGE 84 (102)
Q Consensus 54 DiFerLa~~~-kr~TltsreIQtAvrLlLPGE 84 (102)
++|..+..-+ ..-+|+..|++.+++-.+|+.
T Consensus 13 ~~F~~~D~~dG~~g~Is~~EL~~~l~~~~~~~ 44 (92)
T 3rm1_A 13 DVFHQYSGREGDKHKLKKSELKELINNELSHF 44 (92)
T ss_dssp HHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTT
T ss_pred HHHHHHccCCCCcCeECHHHHHHHHHHHhhhh
Confidence 5676666222 234999999999999866543
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=23.41 E-value=1.2e+02 Score=21.97 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.9
Q ss_pred hHHHH---hHhhcCCCCcchHHHHHHHHhhcchhHHHHHHhhhh
Q 041086 54 NIFEE---FARYKKKPMITSWEIQTVGRLVLPGELVKHIVSEGT 94 (102)
Q Consensus 54 DiFer---La~~~kr~TltsreIQtAvrLlLPGELaKhAvseGt 94 (102)
+++++ +|..+...+||..+|+.|+.+++...-....+.+.-
T Consensus 301 ~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~~ 344 (368)
T 3uk6_A 301 QLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQ 344 (368)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 34455 556678899999999999999888766555555443
No 57
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=22.57 E-value=1.1e+02 Score=19.90 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=24.2
Q ss_pred HhhhhhHHHH----hHhhcCCCCcchHHHHHHHHhhc
Q 041086 49 SRARHNIFEE----FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 49 Sfv~nDiFer----La~~~kr~TltsreIQtAvrLlL 81 (102)
.|| -+|-|. -.+.+....|.++.|+.|+|.+-
T Consensus 48 vfV-gelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 48 VFV-GEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHH-HHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 456 777777 33455678999999999998764
No 58
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.79 E-value=77 Score=22.19 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=17.5
Q ss_pred hHhhcCCCCcchHHHHHHHHhhc
Q 041086 59 FARYKKKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 59 La~~~kr~TltsreIQtAvrLlL 81 (102)
|.+.. ...||+.+|+.++..+|
T Consensus 68 L~~L~-~~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 68 LSDLC-GTVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHB-TTTBCHHHHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHHHHH
Confidence 45553 38999999999998876
No 59
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=21.18 E-value=56 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=15.7
Q ss_pred CCCCcchHHHHHHHHhhc
Q 041086 64 KKPMITSWEIQTVGRLVL 81 (102)
Q Consensus 64 kr~TltsreIQtAvrLlL 81 (102)
...|||..||-.+++-|+
T Consensus 269 ~~~~Lt~eDIl~~ikyLI 286 (296)
T 3lti_A 269 GSGILSXDDIIDVMXXLI 286 (296)
T ss_dssp CCSSCCHHHHHHHHHHHH
T ss_pred CccEecHHHHHHHHHHHH
Confidence 458999999999999876
No 60
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=20.74 E-value=1.2e+02 Score=22.44 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=17.1
Q ss_pred CCCcchHHHHHHHHhhcch
Q 041086 65 KPMITSWEIQTVGRLVLPG 83 (102)
Q Consensus 65 r~TltsreIQtAvrLlLPG 83 (102)
-.-||+.|.++-+|.+|+|
T Consensus 74 ~~~LtP~Dw~~laravLs~ 92 (176)
T 1p7n_A 74 SSPLLPHDVTNLMRVILGP 92 (176)
T ss_dssp SSCCCHHHHHHHHHHHHCH
T ss_pred hCCCChHHHHHHHHHHhCc
Confidence 3689999999999999986
Done!