Query 041087
Match_columns 250
No_of_seqs 208 out of 1262
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 9.1E-59 2E-63 447.1 13.5 179 59-245 23-214 (454)
2 PF00450 Peptidase_S10: Serine 100.0 1.3E-52 2.7E-57 389.1 10.9 168 70-245 1-182 (415)
3 PLN02209 serine carboxypeptida 100.0 6.1E-51 1.3E-55 391.7 14.5 177 60-245 19-213 (437)
4 PLN03016 sinapoylglucose-malat 100.0 1.9E-49 4.1E-54 380.9 14.2 175 61-244 18-210 (433)
5 PTZ00472 serine carboxypeptida 100.0 3.9E-44 8.5E-49 346.2 12.7 169 68-245 35-217 (462)
6 COG2939 Carboxypeptidase C (ca 100.0 4.8E-39 1E-43 310.7 8.4 150 76-234 63-220 (498)
7 KOG1283 Serine carboxypeptidas 100.0 1.2E-29 2.5E-34 235.2 8.7 141 80-234 3-144 (414)
8 PLN02213 sinapoylglucose-malat 99.8 1.3E-20 2.8E-25 174.2 4.0 84 154-245 1-97 (319)
9 COG1506 DAP2 Dipeptidyl aminop 96.9 0.001 2.2E-08 67.1 5.1 120 84-227 367-488 (620)
10 TIGR01250 pro_imino_pep_2 prol 96.6 0.0048 1E-07 52.3 5.7 112 82-231 4-115 (288)
11 TIGR03611 RutD pyrimidine util 96.2 0.011 2.3E-07 49.5 5.7 98 96-231 2-99 (257)
12 PRK00870 haloalkane dehalogena 95.8 0.042 9.1E-07 49.2 8.2 126 63-232 8-135 (302)
13 PHA02857 monoglyceride lipase; 95.5 0.041 8.9E-07 48.2 6.7 106 91-230 9-115 (276)
14 PRK10673 acyl-CoA esterase; Pr 95.2 0.039 8.5E-07 47.2 5.4 89 104-230 11-99 (255)
15 PLN02298 hydrolase, alpha/beta 94.9 0.19 4.1E-06 45.6 9.2 116 81-227 33-149 (330)
16 PLN02385 hydrolase; alpha/beta 94.6 0.086 1.9E-06 48.7 6.4 110 91-230 70-180 (349)
17 PLN02824 hydrolase, alpha/beta 94.6 0.13 2.8E-06 45.7 7.2 107 84-230 12-120 (294)
18 TIGR01249 pro_imino_pep_1 prol 94.4 0.15 3.2E-06 46.1 7.3 108 82-230 6-113 (306)
19 TIGR02427 protocat_pcaD 3-oxoa 94.2 0.13 2.7E-06 42.4 5.9 89 107-232 11-99 (251)
20 TIGR03056 bchO_mg_che_rel puta 93.2 0.26 5.6E-06 42.2 6.3 89 106-230 25-113 (278)
21 PLN02652 hydrolase; alpha/beta 93.1 0.43 9.4E-06 45.8 8.3 108 90-229 118-225 (395)
22 PRK05077 frsA fermentation/res 92.8 0.21 4.5E-06 48.2 5.7 113 84-230 170-283 (414)
23 PF12697 Abhydrolase_6: Alpha/ 91.8 0.21 4.6E-06 40.2 3.8 85 112-231 1-85 (228)
24 TIGR02240 PHA_depoly_arom poly 91.8 0.55 1.2E-05 41.3 6.7 101 92-232 11-111 (276)
25 KOG1455 Lysophospholipase [Lip 91.7 0.48 1E-05 44.8 6.4 128 91-249 36-163 (313)
26 PF10340 DUF2424: Protein of u 90.5 0.1 2.2E-06 50.4 0.8 108 94-231 105-214 (374)
27 TIGR01840 esterase_phb esteras 90.3 0.46 1E-05 40.7 4.6 20 105-124 9-28 (212)
28 PRK10749 lysophospholipase L2; 89.8 1.1 2.5E-05 41.0 7.0 106 92-227 40-146 (330)
29 PRK05855 short chain dehydroge 89.2 1.3 2.9E-05 42.6 7.3 97 92-226 12-108 (582)
30 PRK11126 2-succinyl-6-hydroxy- 89.0 0.43 9.3E-06 40.5 3.5 84 109-231 2-85 (242)
31 PLN02894 hydrolase, alpha/beta 87.9 1.1 2.4E-05 42.8 5.8 103 94-231 93-195 (402)
32 PLN02679 hydrolase, alpha/beta 87.9 2 4.3E-05 40.1 7.4 83 108-226 87-169 (360)
33 TIGR03343 biphenyl_bphD 2-hydr 87.6 0.78 1.7E-05 39.9 4.2 60 155-231 61-120 (282)
34 KOG4409 Predicted hydrolase/ac 87.2 1.3 2.8E-05 42.8 5.7 64 150-227 112-175 (365)
35 PRK14875 acetoin dehydrogenase 87.2 1.7 3.7E-05 39.5 6.3 88 107-231 129-216 (371)
36 TIGR00976 /NonD putative hydro 86.6 0.97 2.1E-05 44.9 4.7 110 91-230 5-115 (550)
37 TIGR03695 menH_SHCHC 2-succiny 86.5 0.76 1.6E-05 37.5 3.3 89 109-231 1-89 (251)
38 PLN02211 methyl indole-3-aceta 85.8 1.6 3.4E-05 39.2 5.3 91 107-231 16-106 (273)
39 PRK10566 esterase; Provisional 85.7 3 6.4E-05 35.8 6.8 113 96-231 14-126 (249)
40 PRK10115 protease 2; Provision 85.5 1.1 2.5E-05 46.1 4.8 123 83-230 417-542 (686)
41 TIGR02821 fghA_ester_D S-formy 85.3 9 0.00019 34.3 9.9 33 92-124 24-57 (275)
42 TIGR03101 hydr2_PEP hydrolase, 85.3 1.6 3.5E-05 39.9 5.1 110 92-231 9-118 (266)
43 COG0596 MhpC Predicted hydrola 84.3 2.9 6.2E-05 33.3 5.7 85 109-229 21-105 (282)
44 PRK03204 haloalkane dehalogena 83.9 7.1 0.00015 35.0 8.6 101 81-226 15-115 (286)
45 KOG2100 Dipeptidyl aminopeptid 83.8 1.5 3.2E-05 45.9 4.8 114 92-227 507-623 (755)
46 PLN03084 alpha/beta hydrolase 83.8 2.6 5.6E-05 40.5 6.1 114 78-230 102-215 (383)
47 PF00561 Abhydrolase_1: alpha/ 83.3 0.91 2E-05 37.4 2.4 59 156-228 2-60 (230)
48 PRK03592 haloalkane dehalogena 82.0 2.3 5E-05 37.7 4.7 97 92-231 16-112 (295)
49 PLN02511 hydrolase 81.9 3.9 8.4E-05 38.9 6.5 110 84-226 75-187 (388)
50 PRK06489 hypothetical protein; 81.4 4.1 9E-05 37.8 6.3 79 77-171 38-121 (360)
51 PRK10985 putative hydrolase; P 79.5 5 0.00011 36.8 6.1 32 92-123 41-72 (324)
52 TIGR01738 bioH putative pimelo 79.0 2.6 5.7E-05 34.4 3.8 80 109-230 4-83 (245)
53 TIGR01607 PST-A Plasmodium sub 78.9 9.1 0.0002 35.5 7.7 125 91-228 6-158 (332)
54 PLN02578 hydrolase 77.5 7.1 0.00015 36.2 6.6 59 154-230 112-170 (354)
55 COG3509 LpqC Poly(3-hydroxybut 76.1 4.9 0.00011 38.1 5.0 104 91-227 43-159 (312)
56 PF10230 DUF2305: Uncharacteri 75.9 7 0.00015 35.5 5.9 98 109-230 2-102 (266)
57 PLN02980 2-oxoglutarate decarb 74.5 7.9 0.00017 44.0 7.0 95 105-231 1367-1464(1655)
58 PRK10349 carboxylesterase BioH 73.8 5.2 0.00011 34.5 4.3 80 110-231 14-93 (256)
59 PLN02442 S-formylglutathione h 72.2 24 0.00052 31.9 8.5 32 91-122 28-60 (283)
60 COG2267 PldB Lysophospholipase 71.6 20 0.00043 33.1 7.9 128 79-241 8-144 (298)
61 PRK08775 homoserine O-acetyltr 70.3 9.4 0.0002 35.1 5.4 60 153-231 98-157 (343)
62 TIGR03100 hydr1_PEP hydrolase, 67.2 9.7 0.00021 34.1 4.7 60 155-229 58-117 (274)
63 PRK07581 hypothetical protein; 66.6 15 0.00032 33.5 5.8 72 154-231 71-143 (339)
64 PLN03087 BODYGUARD 1 domain co 65.8 16 0.00034 36.5 6.3 118 78-231 174-293 (481)
65 KOG1515 Arylacetamide deacetyl 63.9 31 0.00068 32.9 7.7 125 81-236 62-190 (336)
66 COG4099 Predicted peptidase [G 63.8 54 0.0012 31.7 9.0 114 90-230 169-287 (387)
67 PF10503 Esterase_phd: Esteras 61.7 13 0.00028 33.3 4.4 36 196-231 81-116 (220)
68 PF06500 DUF1100: Alpha/beta h 61.0 2.6 5.7E-05 41.3 -0.1 61 155-230 219-279 (411)
69 PF00326 Peptidase_S9: Prolyl 60.0 5.4 0.00012 33.8 1.6 71 153-231 13-83 (213)
70 PF12146 Hydrolase_4: Putative 58.9 40 0.00086 25.1 6.0 59 92-171 1-59 (79)
71 PLN02965 Probable pheophorbida 57.9 11 0.00023 32.8 3.2 61 155-231 31-91 (255)
72 PLN02872 triacylglycerol lipas 56.8 19 0.00042 34.8 5.0 100 107-226 72-174 (395)
73 KOG2564 Predicted acetyltransf 54.9 38 0.00083 32.4 6.4 90 106-226 71-160 (343)
74 KOG3079 Uridylate kinase/adeny 49.6 9.5 0.00021 34.0 1.5 16 107-122 5-20 (195)
75 cd00312 Esterase_lipase Estera 49.3 52 0.0011 31.7 6.7 40 191-231 156-195 (493)
76 TIGR01911 HesB_rel_seleno HesB 44.4 21 0.00045 27.6 2.5 57 111-168 28-89 (92)
77 PF05677 DUF818: Chlamydia CHL 44.2 25 0.00055 34.1 3.5 57 154-225 171-228 (365)
78 PRK00175 metX homoserine O-ace 42.0 69 0.0015 30.1 6.1 32 92-124 32-63 (379)
79 PRK10439 enterobactin/ferric e 41.0 62 0.0014 31.4 5.8 27 213-239 289-323 (411)
80 KOG4391 Predicted alpha/beta h 39.6 89 0.0019 29.1 6.1 115 84-233 56-170 (300)
81 PLN03082 Iron-sulfur cluster a 39.2 21 0.00045 30.7 2.0 62 108-170 77-144 (163)
82 COG0218 Predicted GTPase [Gene 37.3 50 0.0011 29.6 4.1 62 106-171 20-85 (200)
83 PLN00021 chlorophyllase 37.2 89 0.0019 29.1 6.0 40 192-231 102-145 (313)
84 PF10081 Abhydrolase_9: Alpha/ 36.6 60 0.0013 30.6 4.7 36 191-226 88-123 (289)
85 PF10609 ParA: ParA/MinD ATPas 35.4 21 0.00046 27.4 1.3 12 156-167 2-13 (81)
86 cd00707 Pancreat_lipase_like P 34.3 27 0.00058 31.7 2.0 37 192-229 93-129 (275)
87 KOG1838 Alpha/beta hydrolase [ 33.4 1.4E+02 0.003 29.6 6.7 107 84-226 97-212 (409)
88 PF03283 PAE: Pectinacetyleste 31.7 1.5E+02 0.0032 28.5 6.7 32 92-124 34-65 (361)
89 PF05577 Peptidase_S28: Serine 31.4 36 0.00077 32.6 2.4 67 155-227 60-128 (434)
90 PF09292 Neil1-DNA_bind: Endon 30.3 28 0.00061 23.3 1.0 10 111-120 26-35 (39)
91 cd03377 TPP_PFOR_PNO Thiamine 29.4 13 0.00028 36.1 -1.0 37 119-164 35-71 (365)
92 PF05049 IIGP: Interferon-indu 29.0 35 0.00075 33.2 1.9 60 107-168 32-98 (376)
93 PF12695 Abhydrolase_5: Alpha/ 27.0 38 0.00082 25.9 1.5 22 210-231 59-80 (145)
94 PRK05371 x-prolyl-dipeptidyl a 27.0 44 0.00095 35.3 2.3 66 153-231 278-357 (767)
95 KOG2183 Prolylcarboxypeptidase 26.8 71 0.0015 32.0 3.6 38 189-227 145-182 (492)
96 PRK06762 hypothetical protein; 26.3 36 0.00078 27.7 1.3 13 110-122 2-14 (166)
97 PF02129 Peptidase_S15: X-Pro 25.7 48 0.001 29.5 2.1 63 155-231 58-120 (272)
98 KOG1454 Predicted hydrolase/ac 25.7 1.8E+02 0.0039 27.3 6.0 59 157-231 89-147 (326)
99 COG0529 CysC Adenylylsulfate k 24.7 58 0.0013 29.1 2.3 24 106-130 19-44 (197)
100 COG4425 Predicted membrane pro 23.9 80 0.0017 32.1 3.3 38 190-227 375-412 (588)
101 PF14542 Acetyltransf_CG: GCN5 23.3 57 0.0012 24.2 1.8 16 195-210 61-76 (78)
102 PRK10162 acetyl esterase; Prov 22.9 62 0.0013 29.7 2.3 38 192-230 135-172 (318)
103 TIGR03341 YhgI_GntY IscR-regul 22.5 1.4E+02 0.0031 26.1 4.4 63 111-174 24-94 (190)
104 TIGR01392 homoserO_Ac_trn homo 21.1 3.6E+02 0.0078 24.7 7.0 30 92-122 15-44 (351)
105 PF07533 BRK: BRK domain; Int 20.7 57 0.0012 22.4 1.2 16 197-212 28-43 (46)
106 PRK11190 Fe/S biogenesis prote 20.6 1.3E+02 0.0029 26.4 3.8 55 119-173 32-94 (192)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-59 Score=447.07 Aligned_cols=179 Identities=38% Similarity=0.641 Sum_probs=162.1
Q ss_pred CcccCCccccCCCCCCCCCceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEc
Q 041087 59 GLMQADKIKLLPGQSNGVDFDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMN 138 (250)
Q Consensus 59 ~~~~~d~V~~LPG~~~~v~~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~ 138 (250)
..+++|+|+.|||++.+++|++|||||+|+++.+++|||||+||+++|+++||||||||||||||++ |+|.|+|||+|+
T Consensus 23 ~~~~~~~I~~LPG~~~~~~f~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~ 101 (454)
T KOG1282|consen 23 HVDEADLIKSLPGQPGPLPFKQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVK 101 (454)
T ss_pred ccchhhhhhcCCCCCCCCCcccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEc
Confidence 3588899999999998899999999999999889999999999999999999999999999999996 999999999999
Q ss_pred CCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccc
Q 041087 139 KDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAA 218 (250)
Q Consensus 139 ~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~g 218 (250)
.+|.+|..|+||||+.||||||||||||||||..... +.. .+ |+.+|+++++||++||++||+|..++|||+|
T Consensus 102 ~~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~---~~~-~~---D~~~A~d~~~FL~~wf~kfPey~~~~fyI~G 174 (454)
T KOG1282|consen 102 YNGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSS---DYK-TG---DDGTAKDNYEFLQKWFEKFPEYKSNDFYIAG 174 (454)
T ss_pred CCCCcceeCCccccccccEEEEecCCcCCccccCCCC---cCc-CC---cHHHHHHHHHHHHHHHHhChhhcCCCeEEec
Confidence 9999999999999999999999999999999975322 222 22 2478999999999999999999999999999
Q ss_pred cccCCceeccccccccc------CC-------cccCCCCC
Q 041087 219 DEIGDIDIYNICAPICI------SP-------TFGNGSLG 245 (250)
Q Consensus 219 ESYgG~~ip~ia~~~~~------~~-------~~~~~~~~ 245 (250)
|||||+|||.||+.|.+ .| +||||.+.
T Consensus 175 ESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 175 ESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTD 214 (454)
T ss_pred ccccceehHHHHHHHHhccccccCCcccceEEEecCcccC
Confidence 99999999999998842 22 88999775
No 2
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=1.3e-52 Score=389.11 Aligned_cols=168 Identities=32% Similarity=0.545 Sum_probs=137.8
Q ss_pred CCCCCCCCceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCC-CeeeecC
Q 041087 70 PGQSNGVDFDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDG-KTLFRNN 148 (250)
Q Consensus 70 PG~~~~v~~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~-~~l~~N~ 148 (250)
||...++++++|||||+|+++.+++|||||||++++++++||||||||||||||+ +|+|.|+|||+|+.++ .++++|+
T Consensus 1 pg~~~~~~~~~~sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~-~g~f~e~GP~~~~~~~~~~l~~n~ 79 (415)
T PF00450_consen 1 PGLDEPVPFKQYSGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSM-WGLFGENGPFRINPDGPYTLEDNP 79 (415)
T ss_dssp TT-SS-SSSEEEEEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-TH-HHHHCTTSSEEEETTSTSEEEE-T
T ss_pred CCCCCCCCceEEEEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccc-cccccccCceEEeecccccccccc
Confidence 7877789999999999999878899999999999999999999999999999999 7999999999999543 7999999
Q ss_pred CCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecc
Q 041087 149 YAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYN 228 (250)
Q Consensus 149 ~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ 228 (250)
+||++.+|||||||||||||||...... ...+. +++|+++++||++|+++||+|..+++||+||||||+|||.
T Consensus 80 ~sW~~~an~l~iD~PvGtGfS~~~~~~~--~~~~~-----~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~ 152 (415)
T PF00450_consen 80 YSWNKFANLLFIDQPVGTGFSYGNDPSD--YVWND-----DQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPA 152 (415)
T ss_dssp T-GGGTSEEEEE--STTSTT-EESSGGG--GS-SH-----HHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHH
T ss_pred cccccccceEEEeecCceEEeecccccc--ccchh-----hHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchh
Confidence 9999999999999999999999864322 22232 4789999999999999999999999999999999999999
Q ss_pred cccccc-------------cCCcccCCCCC
Q 041087 229 ICAPIC-------------ISPTFGNGSLG 245 (250)
Q Consensus 229 ia~~~~-------------~~~~~~~~~~~ 245 (250)
+|..+. ++..||||-+.
T Consensus 153 ~a~~i~~~~~~~~~~~inLkGi~IGng~~d 182 (415)
T PF00450_consen 153 LASYILQQNKKGDQPKINLKGIAIGNGWID 182 (415)
T ss_dssp HHHHHHHHTCC--STTSEEEEEEEESE-SB
T ss_pred hHHhhhhccccccccccccccceecCcccc
Confidence 998875 23377888764
No 3
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=6.1e-51 Score=391.70 Aligned_cols=177 Identities=24% Similarity=0.445 Sum_probs=155.5
Q ss_pred cccCCccccCCCCCCCCCceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcC
Q 041087 60 LMQADKIKLLPGQSNGVDFDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNK 139 (250)
Q Consensus 60 ~~~~d~V~~LPG~~~~v~~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~ 139 (250)
..+.|+|+.|||++.++++++++|||+|+++.+++|||||||++++++++||+|||||||||||+ +|+|.|+|||+++.
T Consensus 19 ~~~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~-~g~f~e~GP~~~~~ 97 (437)
T PLN02209 19 VRSGSIVKFLPGFKGPLPFELETGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCL-SGLFFENGPLALKN 97 (437)
T ss_pred CCccCeeecCCCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHh-hhHHHhcCCceecc
Confidence 45778999999998789999999999999877899999999999999999999999999999999 79999999999987
Q ss_pred CC-----CeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccc
Q 041087 140 DG-----KTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSR 214 (250)
Q Consensus 140 ~~-----~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l 214 (250)
++ .++++|++||++.|||||||||+||||||...... ..+ +++++++++.||++|+++||+|..+++
T Consensus 98 ~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~---~~~-----~~~~a~~~~~fl~~f~~~~p~~~~~~~ 169 (437)
T PLN02209 98 KVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIE---RTS-----DTSEVKKIHEFLQKWLIKHPQFLSNPF 169 (437)
T ss_pred CCCCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCC---ccC-----CHHHHHHHHHHHHHHHHhCccccCCCE
Confidence 63 47999999999999999999999999999753211 111 135679999999999999999999999
Q ss_pred cccccccCCceeccccccccc-------------CCcccCCCCC
Q 041087 215 DEAADEIGDIDIYNICAPICI-------------SPTFGNGSLG 245 (250)
Q Consensus 215 ~i~gESYgG~~ip~ia~~~~~-------------~~~~~~~~~~ 245 (250)
||+||||||+|||.||..+-+ +..||||-+.
T Consensus 170 yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td 213 (437)
T PLN02209 170 YVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITH 213 (437)
T ss_pred EEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccC
Confidence 999999999999999987742 3378888653
No 4
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=1.9e-49 Score=380.92 Aligned_cols=175 Identities=27% Similarity=0.461 Sum_probs=152.5
Q ss_pred ccCCccccCCCCCCCCCceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCC
Q 041087 61 MQADKIKLLPGQSNGVDFDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKD 140 (250)
Q Consensus 61 ~~~d~V~~LPG~~~~v~~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~ 140 (250)
.+.+.|++|||+..++++++++||++|+++.+.++||||+|++++|+++||+|||||||||||+ .|+|.|+|||+++.+
T Consensus 18 ~~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~-~g~~~e~GP~~~~~~ 96 (433)
T PLN03016 18 DSASIVKFLPGFEGPLPFELETGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCL-GGIIFENGPVGLKFE 96 (433)
T ss_pred cccCeeecCcCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHH-HHHHHhcCCceeecc
Confidence 4558899999997778999999999999877899999999999999999999999999999999 699999999998743
Q ss_pred -----CCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhcccccccccc
Q 041087 141 -----GKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRD 215 (250)
Q Consensus 141 -----~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~ 215 (250)
+.++++|++||++.|||||||||+||||||+..... ..+ + +..|++++.||++|+++||+|..+++|
T Consensus 97 ~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~---~~~--d---~~~a~~~~~fl~~f~~~~p~~~~~~~y 168 (433)
T PLN03016 97 VFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPID---KTG--D---ISEVKRTHEFLQKWLSRHPQYFSNPLY 168 (433)
T ss_pred ccCCCCCceeeCCCchhhcCcEEEecCCCCCCccCCCCCCC---ccC--C---HHHHHHHHHHHHHHHHhChhhcCCCEE
Confidence 257999999999999999999999999999753221 111 1 245688999999999999999999999
Q ss_pred ccccccCCceeccccccccc-------------CCcccCCCC
Q 041087 216 EAADEIGDIDIYNICAPICI-------------SPTFGNGSL 244 (250)
Q Consensus 216 i~gESYgG~~ip~ia~~~~~-------------~~~~~~~~~ 244 (250)
|+||||||+|||.||..|-+ +..+|||-+
T Consensus 169 i~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t 210 (433)
T PLN03016 169 VVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVT 210 (433)
T ss_pred EEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCc
Confidence 99999999999999987742 338899865
No 5
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=3.9e-44 Score=346.17 Aligned_cols=169 Identities=20% Similarity=0.347 Sum_probs=145.5
Q ss_pred cCCCCCCCCCceeEEeEEEecC-CCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeee
Q 041087 68 LLPGQSNGVDFDQYSGYVTVDP-KSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFR 146 (250)
Q Consensus 68 ~LPG~~~~v~~~~ysGyv~v~~-~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~ 146 (250)
++..-..+.++++|+|||+|++ ..+++|||||||++++++++||+|||||||||||+ +|+|.|+|||+|+.++.+++.
T Consensus 35 ~~~~~~~~~~~~~~sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~-~G~f~E~GP~~i~~~~~~~~~ 113 (462)
T PTZ00472 35 GSGWAPCDPSVNQWSGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSM-FALLAENGPCLMNETTGDIYN 113 (462)
T ss_pred CCCccccCCCCcceeEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHH-HhhhccCCCeEEeCCCCceeE
Confidence 3444334567899999999975 45789999999999999999999999999999999 799999999999998778999
Q ss_pred cCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 147 NNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 147 N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
|++||++.+||||||||+|||||+.... + ...+. ++.++++++||+.|+++||+|..+++||+||||||+|+
T Consensus 114 n~~sW~~~~~~l~iDqP~G~G~S~~~~~-~--~~~~~-----~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~ 185 (462)
T PTZ00472 114 NTYSWNNEAYVIYVDQPAGVGFSYADKA-D--YDHNE-----SEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYA 185 (462)
T ss_pred CCcccccccCeEEEeCCCCcCcccCCCC-C--CCCCh-----HHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhH
Confidence 9999999999999999999999997531 1 11121 36789999999999999999999999999999999999
Q ss_pred cccccccc-------------cCCcccCCCCC
Q 041087 227 YNICAPIC-------------ISPTFGNGSLG 245 (250)
Q Consensus 227 p~ia~~~~-------------~~~~~~~~~~~ 245 (250)
|.+|..+. ++..||||-+.
T Consensus 186 p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~d 217 (462)
T PTZ00472 186 PATAYRINMGNKKGDGLYINLAGLAVGNGLTD 217 (462)
T ss_pred HHHHHHHHhhccccCCceeeeEEEEEeccccC
Confidence 99998774 33478888763
No 6
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-39 Score=310.74 Aligned_cols=150 Identities=21% Similarity=0.357 Sum_probs=121.2
Q ss_pred CCceeEEeEEEecCCC-----CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCC-CCeeeecCC
Q 041087 76 VDFDQYSGYVTVDPKS-----GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKD-GKTLFRNNY 149 (250)
Q Consensus 76 v~~~~ysGyv~v~~~~-----~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~-~~~l~~N~~ 149 (250)
+.++.++|.++|++.. .-.+|||+|+..++|.+||++|||||||||||+ +|+|.|+||+||+.+ ++.--+||+
T Consensus 63 ~~~~~~~G~lpv~~~~g~~d~ed~~ffy~fe~~ndp~~rPvi~wlNGGPGcSS~-~g~l~elGP~rI~~~~~P~~~~NP~ 141 (498)
T COG2939 63 LSYPATAGILPVRDYTGYPDAEDFFFFYTFESPNDPANRPVIFWLNGGPGCSSV-TGLLGELGPKRIQSGTSPSYPDNPG 141 (498)
T ss_pred CCcchhccccchhhccCCcccceeEEEEEecCCCCCCCCceEEEecCCCChHhh-hhhhhhcCCeeeeCCCCCCCCCCcc
Confidence 3445555555544322 123899999999999999999999999999999 799999999999988 432227999
Q ss_pred CCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccc--cccccccccCCceec
Q 041087 150 AWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSD--SRDEAADEIGDIDIY 227 (250)
Q Consensus 150 SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~--~l~i~gESYgG~~ip 227 (250)
||++.+||||||||+|||||+........++. .+.+|+..|++.|+..+|+|.+. ++||+||||||+|||
T Consensus 142 SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~--------~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip 213 (498)
T COG2939 142 SWLDFADLVFIDQPVGTGFSRALGDEKKKDFE--------GAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIP 213 (498)
T ss_pred ccccCCceEEEecCcccCcccccccccccchh--------ccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhH
Confidence 99999999999999999999974322222222 33556778999999999999998 999999999999999
Q ss_pred ccccccc
Q 041087 228 NICAPIC 234 (250)
Q Consensus 228 ~ia~~~~ 234 (250)
.+|..+-
T Consensus 214 ~~A~~L~ 220 (498)
T COG2939 214 VFAHELL 220 (498)
T ss_pred HHHHHHH
Confidence 9998774
No 7
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=235.24 Aligned_cols=141 Identities=19% Similarity=0.283 Sum_probs=123.6
Q ss_pred eEEeEEEecCCCCceEEEEEEecCC-CCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCcee
Q 041087 80 QYSGYVTVDPKSGRSLFYYFAESPQ-NSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTL 158 (250)
Q Consensus 80 ~ysGyv~v~~~~~~~lFY~f~ea~~-~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlL 158 (250)
.-.||+.|+. ++++|||+|.+.. ....+|+.+|++||||.||.++|+|+|+||...+ +.+|+.+|.+.||||
T Consensus 3 ~~wg~v~vr~--~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~-----~~~r~~TWlk~adll 75 (414)
T KOG1283|consen 3 EDWGYVDVRT--GAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLD-----GSPRDWTWLKDADLL 75 (414)
T ss_pred ccccceeeec--CceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccC-----CCcCCchhhhhccEE
Confidence 3468999985 6999999999874 4589999999999999999999999999998875 457999999999999
Q ss_pred eeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccccccc
Q 041087 159 RLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAPIC 234 (250)
Q Consensus 159 fID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~~~ 234 (250)
|||+|||+||||..+. ..++.++ ++.|.|+.+.|++|+..||+|...||||+-|||||+..+.++..+.
T Consensus 76 fvDnPVGaGfSyVdg~----~~Y~~~~---~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~ 144 (414)
T KOG1283|consen 76 FVDNPVGAGFSYVDGS----SAYTTNN---KQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELD 144 (414)
T ss_pred EecCCCcCceeeecCc----ccccccH---HHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHH
Confidence 9999999999998743 2344332 4678999999999999999999999999999999999998887664
No 8
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=99.80 E-value=1.3e-20 Score=174.21 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccccc
Q 041087 154 GDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAPI 233 (250)
Q Consensus 154 ~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~~ 233 (250)
+|||||||||+||||||+..... ..+ ++..|++++.||+.|+++||+|..++|||+||||||+|||.+|..|
T Consensus 1 ~aNvLfiDqPvGvGfSy~~~~~~---~~~-----d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I 72 (319)
T PLN02213 1 MANIIFLDQPVGSGFSYSKTPID---KTG-----DISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEI 72 (319)
T ss_pred CccEEEecCCCCCCCCCCCCCCC---ccc-----cHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHH
Confidence 58999999999999999753211 111 1355789999999999999999999999999999999999999987
Q ss_pred cc-------------CCcccCCCCC
Q 041087 234 CI-------------SPTFGNGSLG 245 (250)
Q Consensus 234 ~~-------------~~~~~~~~~~ 245 (250)
.+ +..||||-+.
T Consensus 73 ~~~n~~~~~~~inLkGi~IGNg~t~ 97 (319)
T PLN02213 73 SQGNYICCEPPINLQGYMLGNPVTY 97 (319)
T ss_pred HhhcccccCCceeeeEEEeCCCCCC
Confidence 42 4489998764
No 9
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.95 E-value=0.001 Score=67.09 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=76.9
Q ss_pred EEEecCCCCceEEEEEEecCC-CCCC-CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeee
Q 041087 84 YVTVDPKSGRSLFYYFAESPQ-NSST-NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLG 161 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea~~-~~~~-~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID 161 (250)
++.+....|..+..|++.-.+ ++.+ -|+++++.||| ++. ++. .....- ..=+.+-..|++++
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP--~~~-~~~-------~~~~~~------q~~~~~G~~V~~~n 430 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGP--SAQ-VGY-------SFNPEI------QVLASAGYAVLAPN 430 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCC--ccc-ccc-------ccchhh------HHHhcCCeEEEEeC
Confidence 344444457789999988663 4433 49999999999 444 331 111110 11123446889999
Q ss_pred cCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 162 KRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 162 ~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
-.--+||+........ ... +..+.+|+.++++ |++++|..-...+.|+|-||||.-.-
T Consensus 431 ~RGS~GyG~~F~~~~~---~~~----g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl 488 (620)
T COG1506 431 YRGSTGYGREFADAIR---GDW----GGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTL 488 (620)
T ss_pred CCCCCccHHHHHHhhh---hcc----CCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHH
Confidence 5556677664321110 111 1245778889999 99999999988999999999997543
No 10
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.56 E-value=0.0048 Score=52.30 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=62.6
Q ss_pred EeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeee
Q 041087 82 SGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLG 161 (250)
Q Consensus 82 sGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID 161 (250)
.++++++. ..+.|..+.. +..+|.||++.||||++...+..+.+. +.. +-.+++.+|
T Consensus 4 ~~~~~~~~---~~~~~~~~~~---~~~~~~vl~~hG~~g~~~~~~~~~~~~-----------l~~------~g~~vi~~d 60 (288)
T TIGR01250 4 EGIITVDG---GYHLFTKTGG---EGEKIKLLLLHGGPGMSHEYLENLREL-----------LKE------EGREVIMYD 60 (288)
T ss_pred cceecCCC---CeEEEEeccC---CCCCCeEEEEcCCCCccHHHHHHHHHH-----------HHh------cCCEEEEEc
Confidence 44566542 3444444322 234678889999999986523332221 111 136799999
Q ss_pred cCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 162 KRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 162 ~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
.| |.|.|....... ..++. +..++++..+ +++. ..+++.++|.|+||.-...++.
T Consensus 61 ~~-G~G~s~~~~~~~--~~~~~-----~~~~~~~~~~----~~~~---~~~~~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 61 QL-GCGYSDQPDDSD--ELWTI-----DYFVDELEEV----REKL---GLDKFYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred CC-CCCCCCCCCccc--ccccH-----HHHHHHHHHH----HHHc---CCCcEEEEEeehHHHHHHHHHH
Confidence 77 888886431111 11232 2334443333 3321 2245899999999998776654
No 11
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.19 E-value=0.011 Score=49.55 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=58.4
Q ss_pred EEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCC
Q 041087 96 FYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFG 175 (250)
Q Consensus 96 FY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~ 175 (250)
+|..+.. ...++|+|+++.|.+|.+.. |..+.+. + .+..+++.+|.| |.|.|.....
T Consensus 2 ~~~~~~~--~~~~~~~iv~lhG~~~~~~~-~~~~~~~-----------l-------~~~~~vi~~D~~-G~G~S~~~~~- 58 (257)
T TIGR03611 2 HYELHGP--PDADAPVVVLSSGLGGSGSY-WAPQLDV-----------L-------TQRFHVVTYDHR-GTGRSPGELP- 58 (257)
T ss_pred EEEEecC--CCCCCCEEEEEcCCCcchhH-HHHHHHH-----------H-------HhccEEEEEcCC-CCCCCCCCCc-
Confidence 4555433 23468999999998777655 4433221 1 123689999977 8898864311
Q ss_pred ccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 176 TQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 176 ~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
...+. ++.++++.++++.. ...+++++|.|+||.-+..++.
T Consensus 59 ---~~~~~-----~~~~~~~~~~i~~~-------~~~~~~l~G~S~Gg~~a~~~a~ 99 (257)
T TIGR03611 59 ---PGYSI-----AHMADDVLQLLDAL-------NIERFHFVGHALGGLIGLQLAL 99 (257)
T ss_pred ---ccCCH-----HHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHH
Confidence 11222 23455555555332 2245789999999987766554
No 12
>PRK00870 haloalkane dehalogenase; Provisional
Probab=95.84 E-value=0.042 Score=49.19 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=73.0
Q ss_pred CCccccCCCCCCCCCceeEEeEEEecCCCCc--eEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCC
Q 041087 63 ADKIKLLPGQSNGVDFDQYSGYVTVDPKSGR--SLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKD 140 (250)
Q Consensus 63 ~d~V~~LPG~~~~v~~~~ysGyv~v~~~~~~--~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~ 140 (250)
..++++||-.|. .-.|+.++..+|. +++|.-. .++ +.|.|+.+.|.|+.+.. |..+. |.
T Consensus 8 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~y~~~---G~~-~~~~lvliHG~~~~~~~-w~~~~---~~----- 68 (302)
T PRK00870 8 DSRFENLPDYPF------APHYVDVDDGDGGPLRMHYVDE---GPA-DGPPVLLLHGEPSWSYL-YRKMI---PI----- 68 (302)
T ss_pred cccccCCcCCCC------CceeEeecCCCCceEEEEEEec---CCC-CCCEEEEECCCCCchhh-HHHHH---HH-----
Confidence 346778887764 3346888764443 4665532 223 45788999998877766 44332 11
Q ss_pred CCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccc
Q 041087 141 GKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADE 220 (250)
Q Consensus 141 ~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gES 220 (250)
|.. +-.+++.+|.| |.|.|...+... -++. +.+++ .+.+++++- ...++.++|.|
T Consensus 69 ---L~~------~gy~vi~~Dl~-G~G~S~~~~~~~---~~~~-----~~~a~----~l~~~l~~l---~~~~v~lvGhS 123 (302)
T PRK00870 69 ---LAA------AGHRVIAPDLI-GFGRSDKPTRRE---DYTY-----ARHVE----WMRSWFEQL---DLTDVTLVCQD 123 (302)
T ss_pred ---HHh------CCCEEEEECCC-CCCCCCCCCCcc---cCCH-----HHHHH----HHHHHHHHc---CCCCEEEEEEC
Confidence 111 12688999977 888885321110 0121 23344 444444432 22467889999
Q ss_pred cCCceecccccc
Q 041087 221 IGDIDIYNICAP 232 (250)
Q Consensus 221 YgG~~ip~ia~~ 232 (250)
+||.-...+|..
T Consensus 124 ~Gg~ia~~~a~~ 135 (302)
T PRK00870 124 WGGLIGLRLAAE 135 (302)
T ss_pred hHHHHHHHHHHh
Confidence 999877665543
No 13
>PHA02857 monoglyceride lipase; Provisional
Probab=95.52 E-value=0.041 Score=48.22 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=64.7
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcC-CCceeeeecCccccee
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNN-GDKTLRLGKRDILGIQ 169 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~-~anlLfID~PvGtGfS 169 (250)
+|..|+|..++.. +..+|+||.+-|..+++.. |-.+.+. +.+ -..++.+|.| |.|.|
T Consensus 9 ~g~~l~~~~~~~~--~~~~~~v~llHG~~~~~~~-~~~~~~~------------------l~~~g~~via~D~~-G~G~S 66 (276)
T PHA02857 9 DNDYIYCKYWKPI--TYPKALVFISHGAGEHSGR-YEELAEN------------------ISSLGILVFSHDHI-GHGRS 66 (276)
T ss_pred CCCEEEEEeccCC--CCCCEEEEEeCCCccccch-HHHHHHH------------------HHhCCCEEEEccCC-CCCCC
Confidence 4778999988764 3456999999998766655 4443221 111 2578889966 99988
Q ss_pred ecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 170 RGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 170 ~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
..... . ..+. ...++++.+++....++.+ ..++.++|.|.||.-+..+|
T Consensus 67 ~~~~~-~---~~~~-----~~~~~d~~~~l~~~~~~~~---~~~~~lvG~S~GG~ia~~~a 115 (276)
T PHA02857 67 NGEKM-M---IDDF-----GVYVRDVVQHVVTIKSTYP---GVPVFLLGHSMGATISILAA 115 (276)
T ss_pred CCccC-C---cCCH-----HHHHHHHHHHHHHHHhhCC---CCCEEEEEcCchHHHHHHHH
Confidence 64211 0 1111 1234555566654443333 35788999999997544333
No 14
>PRK10673 acyl-CoA esterase; Provisional
Probab=95.20 E-value=0.039 Score=47.20 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccch
Q 041087 104 QNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTI 183 (250)
Q Consensus 104 ~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~ 183 (250)
+.+.++|.|+++.|.+|.+.. |..+.+. + .+..+++.+|.| |-|.|.... ..+.
T Consensus 11 ~~~~~~~~iv~lhG~~~~~~~-~~~~~~~-----------l-------~~~~~vi~~D~~-G~G~s~~~~------~~~~ 64 (255)
T PRK10673 11 QNPHNNSPIVLVHGLFGSLDN-LGVLARD-----------L-------VNDHDIIQVDMR-NHGLSPRDP------VMNY 64 (255)
T ss_pred CCCCCCCCEEEECCCCCchhH-HHHHHHH-----------H-------hhCCeEEEECCC-CCCCCCCCC------CCCH
Confidence 456778999999999888766 5444321 1 123689999977 888775321 1232
Q ss_pred hhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 184 SLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 184 ~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
++.++++..+|... ..+++.++|-|.||.-+..+|
T Consensus 65 -----~~~~~d~~~~l~~l-------~~~~~~lvGhS~Gg~va~~~a 99 (255)
T PRK10673 65 -----PAMAQDLLDTLDAL-------QIEKATFIGHSMGGKAVMALT 99 (255)
T ss_pred -----HHHHHHHHHHHHHc-------CCCceEEEEECHHHHHHHHHH
Confidence 24466666666542 224588999999999876554
No 15
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=94.85 E-value=0.19 Score=45.65 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=65.7
Q ss_pred EEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcC-CCceee
Q 041087 81 YSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNN-GDKTLR 159 (250)
Q Consensus 81 ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~-~anlLf 159 (250)
..+++... +|..++|+.+........+|+|+++.|..+.++..+-.+. ..+.+ -.+|+.
T Consensus 33 ~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~------------------~~L~~~Gy~V~~ 92 (330)
T PLN02298 33 SKSFFTSP--RGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTA------------------IFLAQMGFACFA 92 (330)
T ss_pred ccceEEcC--CCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHH------------------HHHHhCCCEEEE
Confidence 34455553 4778998776543222467899999997433221111100 01222 378999
Q ss_pred eecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 160 LGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 160 ID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
+|.| |.|.|.... . ...+. +..++++..+++... ....+...++.++|.|.||.-+.
T Consensus 93 ~D~r-GhG~S~~~~-~---~~~~~-----~~~~~D~~~~i~~l~-~~~~~~~~~i~l~GhSmGG~ia~ 149 (330)
T PLN02298 93 LDLE-GHGRSEGLR-A---YVPNV-----DLVVEDCLSFFNSVK-QREEFQGLPRFLYGESMGGAICL 149 (330)
T ss_pred ecCC-CCCCCCCcc-c---cCCCH-----HHHHHHHHHHHHHHH-hcccCCCCCEEEEEecchhHHHH
Confidence 9988 888885321 1 11122 234566666665433 32234445689999999997654
No 16
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=94.63 E-value=0.086 Score=48.65 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=65.5
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcC-CCceeeeecCccccee
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNN-GDKTLRLGKRDILGIQ 169 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~-~anlLfID~PvGtGfS 169 (250)
.|..+||..+...+ ...+|+|+++.|..+.++..+-.+ .+ .+.+ -.+++-+|.| |.|.|
T Consensus 70 ~g~~l~~~~~~p~~-~~~~~~iv~lHG~~~~~~~~~~~~---~~---------------~l~~~g~~v~~~D~~-G~G~S 129 (349)
T PLN02385 70 RGVEIFSKSWLPEN-SRPKAAVCFCHGYGDTCTFFFEGI---AR---------------KIASSGYGVFAMDYP-GFGLS 129 (349)
T ss_pred CCCEEEEEEEecCC-CCCCeEEEEECCCCCccchHHHHH---HH---------------HHHhCCCEEEEecCC-CCCCC
Confidence 47789988776432 245789999999755444311111 11 1111 2678889988 88888
Q ss_pred ecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 170 RGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 170 ~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
.... ....+. ++.++++.++++. +...+++...+.+++|.|.||.-+..++
T Consensus 130 ~~~~----~~~~~~-----~~~~~dv~~~l~~-l~~~~~~~~~~~~LvGhSmGG~val~~a 180 (349)
T PLN02385 130 EGLH----GYIPSF-----DDLVDDVIEHYSK-IKGNPEFRGLPSFLFGQSMGGAVALKVH 180 (349)
T ss_pred CCCC----CCcCCH-----HHHHHHHHHHHHH-HHhccccCCCCEEEEEeccchHHHHHHH
Confidence 6421 111222 2446666666654 3434455555789999999997665444
No 17
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=94.58 E-value=0.13 Score=45.72 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=63.1
Q ss_pred EEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecC
Q 041087 84 YVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKR 163 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~P 163 (250)
|++++ +.+++|.-. .+ ..|.||++.|.++.+.. |-.+.+. | .+...++.+|.|
T Consensus 12 ~~~~~---~~~i~y~~~---G~--~~~~vlllHG~~~~~~~-w~~~~~~-----------L-------~~~~~vi~~Dlp 64 (294)
T PLN02824 12 TWRWK---GYNIRYQRA---GT--SGPALVLVHGFGGNADH-WRKNTPV-----------L-------AKSHRVYAIDLL 64 (294)
T ss_pred eEEEc---CeEEEEEEc---CC--CCCeEEEECCCCCChhH-HHHHHHH-----------H-------HhCCeEEEEcCC
Confidence 55554 355655432 11 23789999999888877 5554431 1 223589999977
Q ss_pred cccceeecccCCcc--ccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 164 DILGIQRGWGFGTQ--VQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 164 vGtGfS~~~~~~~~--~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
|.|.|......+. ...++. ++.++++.++|.+.. .++.+++|-|.||.-.-.+|
T Consensus 65 -G~G~S~~~~~~~~~~~~~~~~-----~~~a~~l~~~l~~l~-------~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 65 -GYGYSDKPNPRSAPPNSFYTF-----ETWGEQLNDFCSDVV-------GDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred -CCCCCCCCccccccccccCCH-----HHHHHHHHHHHHHhc-------CCCeEEEEeCHHHHHHHHHH
Confidence 9999875321110 011222 244555555555442 25678899999997664333
No 18
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=94.39 E-value=0.15 Score=46.09 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=59.3
Q ss_pred EeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeee
Q 041087 82 SGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLG 161 (250)
Q Consensus 82 sGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID 161 (250)
.+|+.+.+ +..++|.-.. .+.. |-|+.+.|+||.+.. .... . . + + .+..+++.+|
T Consensus 6 ~~~~~~~~--~~~l~y~~~g---~~~~-~~lvllHG~~~~~~~-~~~~----~-~-------~--~----~~~~~vi~~D 60 (306)
T TIGR01249 6 SGYLNVSD--NHQLYYEQSG---NPDG-KPVVFLHGGPGSGTD-PGCR----R-F-------F--D----PETYRIVLFD 60 (306)
T ss_pred CCeEEcCC--CcEEEEEECc---CCCC-CEEEEECCCCCCCCC-HHHH----h-c-------c--C----ccCCEEEEEC
Confidence 46777764 5678775532 2233 446789999987644 1110 0 0 0 0 1347899999
Q ss_pred cCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 162 KRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 162 ~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
.| |.|.|....... ..+. ++.+++ +..++++.. ..+..++|.|+||.-+..++
T Consensus 61 ~~-G~G~S~~~~~~~---~~~~-----~~~~~d----l~~l~~~l~---~~~~~lvG~S~GG~ia~~~a 113 (306)
T TIGR01249 61 QR-GCGKSTPHACLE---ENTT-----WDLVAD----IEKLREKLG---IKNWLVFGGSWGSTLALAYA 113 (306)
T ss_pred CC-CCCCCCCCCCcc---cCCH-----HHHHHH----HHHHHHHcC---CCCEEEEEECHHHHHHHHHH
Confidence 77 889886431100 1111 122333 333333321 23578999999998765444
No 19
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=94.21 E-value=0.13 Score=42.39 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhh
Q 041087 107 STNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLM 186 (250)
Q Consensus 107 ~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~ 186 (250)
..+|++|.+.|-++.+.. |..+.+. + .+-.+++.+|.| |.|.|.... . ..+.
T Consensus 11 ~~~~~li~~hg~~~~~~~-~~~~~~~-----------l-------~~~~~v~~~d~~-G~G~s~~~~--~---~~~~--- 62 (251)
T TIGR02427 11 DGAPVLVFINSLGTDLRM-WDPVLPA-----------L-------TPDFRVLRYDKR-GHGLSDAPE--G---PYSI--- 62 (251)
T ss_pred CCCCeEEEEcCcccchhh-HHHHHHH-----------h-------hcccEEEEecCC-CCCCCCCCC--C---CCCH---
Confidence 367888888875444433 4333221 1 123589999977 888874321 1 1122
Q ss_pred hchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccccc
Q 041087 187 VKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAP 232 (250)
Q Consensus 187 V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~ 232 (250)
++.++++.++++.+ ..+.+.++|.|+||.-...+|..
T Consensus 63 --~~~~~~~~~~i~~~-------~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 63 --EDLADDVLALLDHL-------GIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred --HHHHHHHHHHHHHh-------CCCceEEEEeCchHHHHHHHHHH
Confidence 23455555555433 12457899999999876655543
No 20
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=93.17 E-value=0.26 Score=42.25 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=53.0
Q ss_pred CCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhh
Q 041087 106 SSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISL 185 (250)
Q Consensus 106 ~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~ 185 (250)
+.+.|+|+++.|.+|.+.. |..+.+. |. +..+++.+|.| |-|.|..... ..++.
T Consensus 25 ~~~~~~vv~~hG~~~~~~~-~~~~~~~-----------l~-------~~~~vi~~D~~-G~G~S~~~~~----~~~~~-- 78 (278)
T TIGR03056 25 PTAGPLLLLLHGTGASTHS-WRDLMPP-----------LA-------RSFRVVAPDLP-GHGFTRAPFR----FRFTL-- 78 (278)
T ss_pred CCCCCeEEEEcCCCCCHHH-HHHHHHH-----------Hh-------hCcEEEeecCC-CCCCCCCccc----cCCCH--
Confidence 3456899999998776655 4332211 11 12689999966 8888864311 01232
Q ss_pred hhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 186 MVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 186 ~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
+..++++.+++++. ..+++.++|.|+||.-+..+|
T Consensus 79 ---~~~~~~l~~~i~~~-------~~~~~~lvG~S~Gg~~a~~~a 113 (278)
T TIGR03056 79 ---PSMAEDLSALCAAE-------GLSPDGVIGHSAGAAIALRLA 113 (278)
T ss_pred ---HHHHHHHHHHHHHc-------CCCCceEEEECccHHHHHHHH
Confidence 23455555554331 224578999999998665444
No 21
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=93.11 E-value=0.43 Score=45.85 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=65.4
Q ss_pred CCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCccccee
Q 041087 90 KSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQ 169 (250)
Q Consensus 90 ~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS 169 (250)
..+..+||+.+.... ...+|+|+++.|..+.+.. |-.+.+. +.. +-.+++-+|.| |.|-|
T Consensus 118 ~~~~~l~~~~~~p~~-~~~~~~Vl~lHG~~~~~~~-~~~~a~~-----------L~~------~Gy~V~~~D~r-GhG~S 177 (395)
T PLN02652 118 ARRNALFCRSWAPAA-GEMRGILIIIHGLNEHSGR-YLHFAKQ-----------LTS------CGFGVYAMDWI-GHGGS 177 (395)
T ss_pred CCCCEEEEEEecCCC-CCCceEEEEECCchHHHHH-HHHHHHH-----------HHH------CCCEEEEeCCC-CCCCC
Confidence 345788888887642 3457899999998766544 3332211 111 12578889977 88877
Q ss_pred ecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccc
Q 041087 170 RGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNI 229 (250)
Q Consensus 170 ~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~i 229 (250)
..... +..+. +..++++..+++....++|. .+++++|.|.||.-+...
T Consensus 178 ~~~~~----~~~~~-----~~~~~Dl~~~l~~l~~~~~~---~~i~lvGhSmGG~ial~~ 225 (395)
T PLN02652 178 DGLHG----YVPSL-----DYVVEDTEAFLEKIRSENPG---VPCFLFGHSTGGAVVLKA 225 (395)
T ss_pred CCCCC----CCcCH-----HHHHHHHHHHHHHHHHhCCC---CCEEEEEECHHHHHHHHH
Confidence 54311 11122 23355565666655555543 368999999999865433
No 22
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=92.82 E-value=0.21 Score=48.24 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=63.4
Q ss_pred EEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhh-hhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeec
Q 041087 84 YVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLA-YGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGK 162 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~-~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~ 162 (250)
.|.+.-.++..+--|++... .....|+||. .||.++.-.. +..+. + .+.. .-.++|-+|.
T Consensus 170 ~v~i~~~~g~~l~g~l~~P~-~~~~~P~Vli-~gG~~~~~~~~~~~~~---~--------~La~------~Gy~vl~~D~ 230 (414)
T PRK05077 170 ELEFPIPGGGPITGFLHLPK-GDGPFPTVLV-CGGLDSLQTDYYRLFR---D--------YLAP------RGIAMLTIDM 230 (414)
T ss_pred EEEEEcCCCcEEEEEEEECC-CCCCccEEEE-eCCcccchhhhHHHHH---H--------HHHh------CCCEEEEECC
Confidence 44444333445665555443 3356798885 4666542110 22111 1 0111 1267899998
Q ss_pred CcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 163 RDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 163 PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
| |.|.|...... .. .......+..|+...|..-...+.++|-|+||.....+|
T Consensus 231 p-G~G~s~~~~~~-----~d---------~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A 283 (414)
T PRK05077 231 P-SVGFSSKWKLT-----QD---------SSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLA 283 (414)
T ss_pred C-CCCCCCCCCcc-----cc---------HHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHH
Confidence 8 99998542110 01 111223455667777766667899999999999877554
No 23
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=91.83 E-value=0.21 Score=40.16 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=51.6
Q ss_pred eEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhchHH
Q 041087 112 LLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSM 191 (250)
Q Consensus 112 vlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~ 191 (250)
||.+.|.++.+.. |..+.+. | . +-.+++.+|.| |.|.|..... ....+. ++.
T Consensus 1 vv~~hG~~~~~~~-~~~~~~~-----------l-~------~~~~v~~~d~~-G~G~s~~~~~---~~~~~~-----~~~ 52 (228)
T PF12697_consen 1 VVFLHGFGGSSES-WDPLAEA-----------L-A------RGYRVIAFDLP-GHGRSDPPPD---YSPYSI-----EDY 52 (228)
T ss_dssp EEEE-STTTTGGG-GHHHHHH-----------H-H------TTSEEEEEECT-TSTTSSSHSS---GSGGSH-----HHH
T ss_pred eEEECCCCCCHHH-HHHHHHH-----------H-h------CCCEEEEEecC-Cccccccccc---cCCcch-----hhh
Confidence 6788998888766 5444321 1 1 34679999977 8888875421 001121 233
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 192 IKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 192 a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+ +.+..++++... ++.+++|.|+||..+..++.
T Consensus 53 ~----~~l~~~l~~~~~---~~~~lvG~S~Gg~~a~~~a~ 85 (228)
T PF12697_consen 53 A----EDLAELLDALGI---KKVILVGHSMGGMIALRLAA 85 (228)
T ss_dssp H----HHHHHHHHHTTT---SSEEEEEETHHHHHHHHHHH
T ss_pred h----hhhhhccccccc---cccccccccccccccccccc
Confidence 4 444455555333 57889999999998876654
No 24
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=91.80 E-value=0.55 Score=41.34 Aligned_cols=101 Identities=12% Similarity=0.002 Sum_probs=58.2
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
+..+.|+..+. + ...|.|+++.|-++.+.. |..+.+ .| .+..+++.+|.| |.|.|..
T Consensus 11 ~~~~~~~~~~~--~-~~~~plvllHG~~~~~~~-w~~~~~-----------~L-------~~~~~vi~~Dl~-G~G~S~~ 67 (276)
T TIGR02240 11 GQSIRTAVRPG--K-EGLTPLLIFNGIGANLEL-VFPFIE-----------AL-------DPDLEVIAFDVP-GVGGSST 67 (276)
T ss_pred CcEEEEEEecC--C-CCCCcEEEEeCCCcchHH-HHHHHH-----------Hh-------ccCceEEEECCC-CCCCCCC
Confidence 45677766432 2 234567888986555555 433322 11 123689999977 8888853
Q ss_pred ccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccccc
Q 041087 172 WGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAP 232 (250)
Q Consensus 172 ~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~ 232 (250)
.. . .++. +..++++.++|... ..+++.++|.|+||.-+-.+|..
T Consensus 68 ~~--~---~~~~-----~~~~~~~~~~i~~l-------~~~~~~LvG~S~GG~va~~~a~~ 111 (276)
T TIGR02240 68 PR--H---PYRF-----PGLAKLAARMLDYL-------DYGQVNAIGVSWGGALAQQFAHD 111 (276)
T ss_pred CC--C---cCcH-----HHHHHHHHHHHHHh-------CcCceEEEEECHHHHHHHHHHHH
Confidence 21 1 1222 23344444444442 22468899999999977666643
No 25
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=91.65 E-value=0.48 Score=44.82 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=82.0
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceee
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQR 170 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~ 170 (250)
.|..||........+++.+-+|+.+.|.-+-+|..| +++- -+++..| .-+-.+|+. |.|.|.
T Consensus 36 rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~---~~~a-~~l~~~g-------------~~v~a~D~~-GhG~Sd 97 (313)
T KOG1455|consen 36 RGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRY---QSTA-KRLAKSG-------------FAVYAIDYE-GHGRSD 97 (313)
T ss_pred CCCEeEEEecccCCCCCCceEEEEEcCCcccchhhH---HHHH-HHHHhCC-------------CeEEEeecc-CCCcCC
Confidence 478899887776655677888999898655543312 2221 1122222 224558976 999998
Q ss_pred cccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccccccccCCcccCCCCCCCCC
Q 041087 171 GWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAPICISPTFGNGSLGSASL 249 (250)
Q Consensus 171 ~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~~~~~~~~~~~~~~~~~~ 249 (250)
+.. .++.+. +..++|...|+.....+ .++...+.++.|||-||-=+=.+ .|+.|.|=||.++++-+
T Consensus 98 Gl~----~yi~~~-----d~~v~D~~~~~~~i~~~-~e~~~lp~FL~GeSMGGAV~Ll~---~~k~p~~w~G~ilvaPm 163 (313)
T KOG1455|consen 98 GLH----AYVPSF-----DLVVDDVISFFDSIKER-EENKGLPRFLFGESMGGAVALLI---ALKDPNFWDGAILVAPM 163 (313)
T ss_pred CCc----ccCCcH-----HHHHHHHHHHHHHHhhc-cccCCCCeeeeecCcchHHHHHH---HhhCCcccccceeeecc
Confidence 641 223333 23456666777766555 68888899999999999533222 35689999999888743
No 26
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=90.49 E-value=0.1 Score=50.40 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=60.1
Q ss_pred eEEEEEEecC--CCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 94 SLFYYFAESP--QNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 94 ~lFY~f~ea~--~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
.-.||++++. .+|+++||++++.|| |.+.+.=|+.+.. ..+-+...+...+|.+|-..-.
T Consensus 105 ~~s~Wlvk~P~~~~pk~DpVlIYlHGG--------GY~l~~~p~qi~~-----L~~i~~~l~~~SILvLDYsLt~----- 166 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKPKSDPVLIYLHGG--------GYFLGTTPSQIEF-----LLNIYKLLPEVSILVLDYSLTS----- 166 (374)
T ss_pred cceEEEEeCCcccCCCCCcEEEEEcCC--------eeEecCCHHHHHH-----HHHHHHHcCCCeEEEEeccccc-----
Confidence 4579999964 368889999999998 4444555555431 1111222223389999944322
Q ss_pred ccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 172 WGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 172 ~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
.......+.+ ...+.++-+++..+.. -.+.+.++|+|=||.-+-++.+
T Consensus 167 -~~~~~~~yPt--------QL~qlv~~Y~~Lv~~~---G~~nI~LmGDSAGGnL~Ls~Lq 214 (374)
T PF10340_consen 167 -SDEHGHKYPT--------QLRQLVATYDYLVESE---GNKNIILMGDSAGGNLALSFLQ 214 (374)
T ss_pred -cccCCCcCch--------HHHHHHHHHHHHHhcc---CCCeEEEEecCccHHHHHHHHH
Confidence 0000001111 1333444555545332 2357899999999987654443
No 27
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=90.31 E-value=0.46 Score=40.74 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=15.8
Q ss_pred CCCCCCceEeeCCCCcchhh
Q 041087 105 NSSTNPSLLWLDGGPGCSSL 124 (250)
Q Consensus 105 ~~~~~PlvlWlNGGPGcSSl 124 (250)
..+++|+|++|.|+++..+-
T Consensus 9 ~~~~~P~vv~lHG~~~~~~~ 28 (212)
T TIGR01840 9 LTGPRALVLALHGCGQTASA 28 (212)
T ss_pred CCCCCCEEEEeCCCCCCHHH
Confidence 34678999999999876554
No 28
>PRK10749 lysophospholipase L2; Provisional
Probab=89.76 E-value=1.1 Score=41.03 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=60.1
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
|..++|+.+... ..+|+||.+.|-.+.+.. | .++.+.. .. +-.+++-+|.| |.|.|..
T Consensus 40 g~~l~~~~~~~~---~~~~~vll~HG~~~~~~~-y---~~~~~~l--------~~------~g~~v~~~D~~-G~G~S~~ 97 (330)
T PRK10749 40 DIPIRFVRFRAP---HHDRVVVICPGRIESYVK-Y---AELAYDL--------FH------LGYDVLIIDHR-GQGRSGR 97 (330)
T ss_pred CCEEEEEEccCC---CCCcEEEEECCccchHHH-H---HHHHHHH--------HH------CCCeEEEEcCC-CCCCCCC
Confidence 567888877643 346788999887544333 3 2222211 11 12578889977 8888853
Q ss_pred ccCCc-cccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 172 WGFGT-QVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 172 ~~~~~-~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
..... .....+. ++.++++..+++...+.. ...+++++|.|.||.-+-
T Consensus 98 ~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~---~~~~~~l~GhSmGG~ia~ 146 (330)
T PRK10749 98 LLDDPHRGHVERF-----NDYVDDLAAFWQQEIQPG---PYRKRYALAHSMGGAILT 146 (330)
T ss_pred CCCCCCcCccccH-----HHHHHHHHHHHHHHHhcC---CCCCeEEEEEcHHHHHHH
Confidence 21110 0011122 244556666666544432 246789999999997664
No 29
>PRK05855 short chain dehydrogenase; Validated
Probab=89.16 E-value=1.3 Score=42.62 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=59.2
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
+..+.|+.+. +.+.|.|+.+.|.++.+.. |..+.+. | .+...++.+|.| |.|.|..
T Consensus 12 g~~l~~~~~g----~~~~~~ivllHG~~~~~~~-w~~~~~~-----------L-------~~~~~Vi~~D~~-G~G~S~~ 67 (582)
T PRK05855 12 GVRLAVYEWG----DPDRPTVVLVHGYPDNHEV-WDGVAPL-----------L-------ADRFRVVAYDVR-GAGRSSA 67 (582)
T ss_pred CEEEEEEEcC----CCCCCeEEEEcCCCchHHH-HHHHHHH-----------h-------hcceEEEEecCC-CCCCCCC
Confidence 5667776542 2347889999999766655 4443321 1 122679999977 9999864
Q ss_pred ccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 172 WGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 172 ~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
.... ..++. ++.++++..+++..- ..++++++|-|+||.-+
T Consensus 68 ~~~~---~~~~~-----~~~a~dl~~~i~~l~------~~~~~~lvGhS~Gg~~a 108 (582)
T PRK05855 68 PKRT---AAYTL-----ARLADDFAAVIDAVS------PDRPVHLLAHDWGSIQG 108 (582)
T ss_pred CCcc---cccCH-----HHHHHHHHHHHHHhC------CCCcEEEEecChHHHHH
Confidence 3211 11222 245666666666431 12458899999999544
No 30
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=89.04 E-value=0.43 Score=40.51 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhc
Q 041087 109 NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVK 188 (250)
Q Consensus 109 ~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~ 188 (250)
.|.|+++.|.+|++.. |-.+.+. + +..+++.+|.| |.|.|.... ..+.
T Consensus 2 ~p~vvllHG~~~~~~~-w~~~~~~-----------l--------~~~~vi~~D~~-G~G~S~~~~------~~~~----- 49 (242)
T PRK11126 2 LPWLVFLHGLLGSGQD-WQPVGEA-----------L--------PDYPRLYIDLP-GHGGSAAIS------VDGF----- 49 (242)
T ss_pred CCEEEEECCCCCChHH-HHHHHHH-----------c--------CCCCEEEecCC-CCCCCCCcc------ccCH-----
Confidence 5889999999888766 5443211 1 12789999966 888885321 1121
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 189 NSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 189 ~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+..++ .+.+++++. ...+..++|-|+||.-+-.+|.
T Consensus 50 ~~~~~----~l~~~l~~~---~~~~~~lvG~S~Gg~va~~~a~ 85 (242)
T PRK11126 50 ADVSR----LLSQTLQSY---NILPYWLVGYSLGGRIAMYYAC 85 (242)
T ss_pred HHHHH----HHHHHHHHc---CCCCeEEEEECHHHHHHHHHHH
Confidence 23344 444444432 3467889999999987765544
No 31
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=87.90 E-value=1.1 Score=42.80 Aligned_cols=103 Identities=10% Similarity=0.058 Sum_probs=58.9
Q ss_pred eEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeeccc
Q 041087 94 SLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWG 173 (250)
Q Consensus 94 ~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~ 173 (250)
.+.+..+.. ..++|.|+.+.|.++.+.. |....+ .| .+..+++.+|.| |.|-|....
T Consensus 93 ~~~~~~~~~---~~~~p~vvllHG~~~~~~~-~~~~~~-----------~L-------~~~~~vi~~D~r-G~G~S~~~~ 149 (402)
T PLN02894 93 FINTVTFDS---KEDAPTLVMVHGYGASQGF-FFRNFD-----------AL-------ASRFRVIAIDQL-GWGGSSRPD 149 (402)
T ss_pred eEEEEEecC---CCCCCEEEEECCCCcchhH-HHHHHH-----------HH-------HhCCEEEEECCC-CCCCCCCCC
Confidence 454444432 2467999999998776555 322110 11 123679999977 888774321
Q ss_pred CCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 174 FGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 174 ~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
. ..... +...+.+++.+..|+++. ...+++++|.|+||.-.-.+|.
T Consensus 150 ~----~~~~~-----~~~~~~~~~~i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~ 195 (402)
T PLN02894 150 F----TCKST-----EETEAWFIDSFEEWRKAK---NLSNFILLGHSFGGYVAAKYAL 195 (402)
T ss_pred c----ccccH-----HHHHHHHHHHHHHHHHHc---CCCCeEEEEECHHHHHHHHHHH
Confidence 1 01111 122334556666776643 2246899999999986654443
No 32
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=87.87 E-value=2 Score=40.15 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=49.6
Q ss_pred CCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhh
Q 041087 108 TNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMV 187 (250)
Q Consensus 108 ~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V 187 (250)
+.|.|+.+.|-++.+.. |..+.+. | .+...++.+|.| |.|.|.... . ..++.
T Consensus 87 ~gp~lvllHG~~~~~~~-w~~~~~~-----------L-------~~~~~via~Dl~-G~G~S~~~~--~--~~~~~---- 138 (360)
T PLN02679 87 SGPPVLLVHGFGASIPH-WRRNIGV-----------L-------AKNYTVYAIDLL-GFGASDKPP--G--FSYTM---- 138 (360)
T ss_pred CCCeEEEECCCCCCHHH-HHHHHHH-----------H-------hcCCEEEEECCC-CCCCCCCCC--C--ccccH----
Confidence 34778889998877766 5443321 1 122578999977 888875421 1 11222
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 188 KNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 188 ~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
+..++++.+++++. ...+.+++|.|.||.-+
T Consensus 139 -~~~a~~l~~~l~~l-------~~~~~~lvGhS~Gg~ia 169 (360)
T PLN02679 139 -ETWAELILDFLEEV-------VQKPTVLIGNSVGSLAC 169 (360)
T ss_pred -HHHHHHHHHHHHHh-------cCCCeEEEEECHHHHHH
Confidence 23455555555432 23467889999999643
No 33
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=87.57 E-value=0.78 Score=39.85 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=35.2
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
.+++.+|.| |.|.|......+. ... ..++++.+++ +. ...++.+++|-|+||.-+..+|.
T Consensus 61 ~~vi~~D~~-G~G~S~~~~~~~~---~~~------~~~~~l~~~l----~~---l~~~~~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 61 YRVILKDSP-GFNKSDAVVMDEQ---RGL------VNARAVKGLM----DA---LDIEKAHLVGNSMGGATALNFAL 120 (282)
T ss_pred CEEEEECCC-CCCCCCCCcCccc---ccc------hhHHHHHHHH----HH---cCCCCeeEEEECchHHHHHHHHH
Confidence 789999966 8888864311110 010 1234343443 33 23356788999999988765544
No 34
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=87.23 E-value=1.3 Score=42.81 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=44.0
Q ss_pred CCcCCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 150 AWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 150 SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
...+.-||-.||.| |-|.|-...+..+. ....+.|++-|++|.++..-- ...++|.|+||.-..
T Consensus 112 ~La~~~~vyaiDll-G~G~SSRP~F~~d~----------~~~e~~fvesiE~WR~~~~L~---KmilvGHSfGGYLaa 175 (365)
T KOG4409|consen 112 DLAKIRNVYAIDLL-GFGRSSRPKFSIDP----------TTAEKEFVESIEQWRKKMGLE---KMILVGHSFGGYLAA 175 (365)
T ss_pred hhhhcCceEEeccc-CCCCCCCCCCCCCc----------ccchHHHHHHHHHHHHHcCCc---ceeEeeccchHHHHH
Confidence 33446789999966 88888765443211 112336889999999986332 578899999997554
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=87.21 E-value=1.7 Score=39.53 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhh
Q 041087 107 STNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLM 186 (250)
Q Consensus 107 ~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~ 186 (250)
.+.|.+|++.|.+|++.. |..+.+. |. +..+++-+|.| |.|.|..... ..+.
T Consensus 129 ~~~~~vl~~HG~~~~~~~-~~~~~~~-----------l~-------~~~~v~~~d~~-g~G~s~~~~~-----~~~~--- 180 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNN-WLFNHAA-----------LA-------AGRPVIALDLP-GHGASSKAVG-----AGSL--- 180 (371)
T ss_pred CCCCeEEEECCCCCccch-HHHHHHH-----------Hh-------cCCEEEEEcCC-CCCCCCCCCC-----CCCH---
Confidence 446889999998887766 5444321 11 12579999976 8888743211 1122
Q ss_pred hchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 187 VKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 187 V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
++.+++ +..++++. ...++.++|.|+||.-...+|.
T Consensus 181 --~~~~~~----~~~~~~~~---~~~~~~lvG~S~Gg~~a~~~a~ 216 (371)
T PRK14875 181 --DELAAA----VLAFLDAL---GIERAHLVGHSMGGAVALRLAA 216 (371)
T ss_pred --HHHHHH----HHHHHHhc---CCccEEEEeechHHHHHHHHHH
Confidence 233433 34444332 2346789999999987776554
No 36
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=86.60 E-value=0.97 Score=44.92 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=61.2
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCc-CCCceeeeecCccccee
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWN-NGDKTLRLGKRDILGIQ 169 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~-~~anlLfID~PvGtGfS 169 (250)
+|..|+...+..+. ..+.|+||.++|-...+... .+... ....-|. +-..++-+|.+ |+|.|
T Consensus 5 DG~~L~~~~~~P~~-~~~~P~Il~~~gyg~~~~~~------~~~~~---------~~~~~l~~~Gy~vv~~D~R-G~g~S 67 (550)
T TIGR00976 5 DGTRLAIDVYRPAG-GGPVPVILSRTPYGKDAGLR------WGLDK---------TEPAWFVAQGYAVVIQDTR-GRGAS 67 (550)
T ss_pred CCCEEEEEEEecCC-CCCCCEEEEecCCCCchhhc------ccccc---------ccHHHHHhCCcEEEEEecc-ccccC
Confidence 46778877775432 44689999998642221110 00000 0000111 23678889955 99988
Q ss_pred ecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 170 RGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 170 ~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
.+... .... ..++|..++|+ |+.+.| ++...+.++|.||||.-.-.+|
T Consensus 68 ~g~~~-----~~~~------~~~~D~~~~i~-~l~~q~-~~~~~v~~~G~S~GG~~a~~~a 115 (550)
T TIGR00976 68 EGEFD-----LLGS------DEAADGYDLVD-WIAKQP-WCDGNVGMLGVSYLAVTQLLAA 115 (550)
T ss_pred CCceE-----ecCc------ccchHHHHHHH-HHHhCC-CCCCcEEEEEeChHHHHHHHHh
Confidence 75310 0111 22444544444 666665 5567899999999997654443
No 37
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=86.53 E-value=0.76 Score=37.50 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhc
Q 041087 109 NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVK 188 (250)
Q Consensus 109 ~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~ 188 (250)
+|.|+.+.|-+|.+.. |-.+.+ .|. +-.+++-+|.| |.|.|..... ....+.
T Consensus 1 ~~~vv~~hG~~~~~~~-~~~~~~-----------~L~-------~~~~v~~~d~~-g~G~s~~~~~---~~~~~~----- 52 (251)
T TIGR03695 1 KPVLVFLHGFLGSGAD-WQALIE-----------LLG-------PHFRCLAIDLP-GHGSSQSPDE---IERYDF----- 52 (251)
T ss_pred CCEEEEEcCCCCchhh-HHHHHH-----------Hhc-------ccCeEEEEcCC-CCCCCCCCCc---cChhhH-----
Confidence 4789999998776655 432221 111 22688999966 8888854210 011121
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 189 NSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 189 ~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
++.+++ ++..++++. ..+++.++|.|+||.-+..+|.
T Consensus 53 ~~~~~~---~~~~~~~~~---~~~~~~l~G~S~Gg~ia~~~a~ 89 (251)
T TIGR03695 53 EEAAQD---ILATLLDQL---GIEPFFLVGYSMGGRIALYYAL 89 (251)
T ss_pred HHHHHH---HHHHHHHHc---CCCeEEEEEeccHHHHHHHHHH
Confidence 122333 133344332 2356889999999987765554
No 38
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=85.76 E-value=1.6 Score=39.23 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=52.9
Q ss_pred CCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhh
Q 041087 107 STNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLM 186 (250)
Q Consensus 107 ~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~ 186 (250)
.++|.|+++.|..+.+.. |..+... |.. +-.+++-+|.| |.|-|..... ...+.
T Consensus 16 ~~~p~vvliHG~~~~~~~-w~~~~~~-----------L~~------~g~~vi~~dl~-g~G~s~~~~~----~~~~~--- 69 (273)
T PLN02211 16 RQPPHFVLIHGISGGSWC-WYKIRCL-----------MEN------SGYKVTCIDLK-SAGIDQSDAD----SVTTF--- 69 (273)
T ss_pred CCCCeEEEECCCCCCcCc-HHHHHHH-----------HHh------CCCEEEEeccc-CCCCCCCCcc----cCCCH---
Confidence 668999999997666555 4333211 111 12578889987 7776643210 11222
Q ss_pred hchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 187 VKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 187 V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
++.+ +.+.+++++... .++.+++|.|+||.-+..++.
T Consensus 70 --~~~~----~~l~~~i~~l~~--~~~v~lvGhS~GG~v~~~~a~ 106 (273)
T PLN02211 70 --DEYN----KPLIDFLSSLPE--NEKVILVGHSAGGLSVTQAIH 106 (273)
T ss_pred --HHHH----HHHHHHHHhcCC--CCCEEEEEECchHHHHHHHHH
Confidence 1233 445555554322 357889999999996655543
No 39
>PRK10566 esterase; Provisional
Probab=85.67 E-value=3 Score=35.84 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=58.1
Q ss_pred EEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCC
Q 041087 96 FYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFG 175 (250)
Q Consensus 96 FY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~ 175 (250)
+|-++.........|+|+.+.|.++.... +..+.. .+.. +-.+++.+|.| |.|-|+... .
T Consensus 14 ~~~~~p~~~~~~~~p~vv~~HG~~~~~~~-~~~~~~-----------~l~~------~G~~v~~~d~~-g~G~~~~~~-~ 73 (249)
T PRK10566 14 VLHAFPAGQRDTPLPTVFFYHGFTSSKLV-YSYFAV-----------ALAQ------AGFRVIMPDAP-MHGARFSGD-E 73 (249)
T ss_pred eEEEcCCCCCCCCCCEEEEeCCCCcccch-HHHHHH-----------HHHh------CCCEEEEecCC-cccccCCCc-c
Confidence 44444443334567999999999876544 322211 1111 12568888866 555443211 1
Q ss_pred ccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 176 TQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 176 ~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
. ..+.....++ ....+++.+ +..|+.+.+......+.++|.|+||+-...++.
T Consensus 74 ~-~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~ 126 (249)
T PRK10566 74 A-RRLNHFWQIL-LQNMQEFPT-LRAAIREEGWLLDDRLAVGGASMGGMTALGIMA 126 (249)
T ss_pred c-cchhhHHHHH-HHHHHHHHH-HHHHHHhcCCcCccceeEEeecccHHHHHHHHH
Confidence 0 0111100000 012333323 345555554444567999999999998876553
No 40
>PRK10115 protease 2; Provisional
Probab=85.50 E-value=1.1 Score=46.08 Aligned_cols=123 Identities=10% Similarity=-0.027 Sum_probs=65.7
Q ss_pred eEEEecCCCCceEEEEEEecCC--CCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCC-ceee
Q 041087 83 GYVTVDPKSGRSLFYYFAESPQ--NSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGD-KTLR 159 (250)
Q Consensus 83 Gyv~v~~~~~~~lFY~f~ea~~--~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~a-nlLf 159 (250)
-.+.+....|..+-.|++..+. ...+.|++++..||||.+.. .+...+. ..|.+.. -+++
T Consensus 417 e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~-p~f~~~~----------------~~l~~rG~~v~~ 479 (686)
T PRK10115 417 EHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASID-ADFSFSR----------------LSLLDRGFVYAI 479 (686)
T ss_pred EEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC-CCccHHH----------------HHHHHCCcEEEE
Confidence 3444544557777766554332 34567999999999998855 2222221 1232221 2333
Q ss_pred eecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 160 LGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 160 ID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
..---|+||.+.+-.... ..+. ..+.+|++...+ |+.+..---...+-++|-||||.-+-.++
T Consensus 480 ~n~RGs~g~G~~w~~~g~-~~~k------~~~~~D~~a~~~-~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~ 542 (686)
T PRK10115 480 VHVRGGGELGQQWYEDGK-FLKK------KNTFNDYLDACD-ALLKLGYGSPSLCYGMGGSAGGMLMGVAI 542 (686)
T ss_pred EEcCCCCccCHHHHHhhh-hhcC------CCcHHHHHHHHH-HHHHcCCCChHHeEEEEECHHHHHHHHHH
Confidence 332346777765421100 0011 123455555554 55554333345588999999999775433
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=85.30 E-value=9 Score=34.30 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.9
Q ss_pred CceEEEEEEecC-CCCCCCCceEeeCCCCcchhh
Q 041087 92 GRSLFYYFAESP-QNSSTNPSLLWLDGGPGCSSL 124 (250)
Q Consensus 92 ~~~lFY~f~ea~-~~~~~~PlvlWlNGGPGcSSl 124 (250)
+..+-|..|..+ ....+.|+|+++.|.++..-.
T Consensus 24 ~~~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~~ 57 (275)
T TIGR02821 24 GVPMTFGVFLPPQAAAGPVPVLWYLSGLTCTHEN 57 (275)
T ss_pred CCceEEEEEcCCCccCCCCCEEEEccCCCCCccH
Confidence 455666666543 234568999999998776543
No 42
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=85.25 E-value=1.6 Score=39.94 Aligned_cols=110 Identities=9% Similarity=-0.016 Sum_probs=57.8
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
...+|.|+++... ...+|+||.+.|-.+-..-..-.+..... .|.. +-.+++-+|.| |.|.|.+
T Consensus 9 ~g~~~~~~~~p~~-~~~~~~VlllHG~g~~~~~~~~~~~~la~--------~La~------~Gy~Vl~~Dl~-G~G~S~g 72 (266)
T TIGR03101 9 HGFRFCLYHPPVA-VGPRGVVIYLPPFAEEMNKSRRMVALQAR--------AFAA------GGFGVLQIDLY-GCGDSAG 72 (266)
T ss_pred CCcEEEEEecCCC-CCCceEEEEECCCcccccchhHHHHHHHH--------HHHH------CCCEEEEECCC-CCCCCCC
Confidence 4568888886653 23478999999842211000001111100 1111 23678899977 8888864
Q ss_pred ccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 172 WGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 172 ~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
... + .+.. ..+++.... .+|+++.. ..++.++|.|.||.-...++.
T Consensus 73 ~~~-~----~~~~-----~~~~Dv~~a-i~~L~~~~---~~~v~LvG~SmGG~vAl~~A~ 118 (266)
T TIGR03101 73 DFA-A----ARWD-----VWKEDVAAA-YRWLIEQG---HPPVTLWGLRLGALLALDAAN 118 (266)
T ss_pred ccc-c----CCHH-----HHHHHHHHH-HHHHHhcC---CCCEEEEEECHHHHHHHHHHH
Confidence 311 1 1221 223333222 33444432 357899999999987765553
No 43
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=84.33 E-value=2.9 Score=33.33 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhc
Q 041087 109 NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVK 188 (250)
Q Consensus 109 ~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~ 188 (250)
.|.++++.|+|+++.. +...... +...... .+++.+|.| |.|.|. . . ....
T Consensus 21 ~~~i~~~hg~~~~~~~-~~~~~~~-----------~~~~~~~----~~~~~~d~~-g~g~s~-~-~-----~~~~----- 71 (282)
T COG0596 21 GPPLVLLHGFPGSSSV-WRPVFKV-----------LPALAAR----YRVIAPDLR-GHGRSD-P-A-----GYSL----- 71 (282)
T ss_pred CCeEEEeCCCCCchhh-hHHHHHH-----------hhccccc----eEEEEeccc-CCCCCC-c-c-----cccH-----
Confidence 6699999999998877 4331111 1111111 789999999 999997 1 0 0111
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccccccccCCceeccc
Q 041087 189 NSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNI 229 (250)
Q Consensus 189 ~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~i 229 (250)
....+.+..|++... ..+..++|.|+||.-.-.+
T Consensus 72 ----~~~~~~~~~~~~~~~---~~~~~l~G~S~Gg~~~~~~ 105 (282)
T COG0596 72 ----SAYADDLAALLDALG---LEKVVLVGHSMGGAVALAL 105 (282)
T ss_pred ----HHHHHHHHHHHHHhC---CCceEEEEecccHHHHHHH
Confidence 111344444454321 1127889999998665433
No 44
>PRK03204 haloalkane dehalogenase; Provisional
Probab=83.90 E-value=7.1 Score=34.96 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=54.7
Q ss_pred EEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeee
Q 041087 81 YSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRL 160 (250)
Q Consensus 81 ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfI 160 (250)
.+-+++++ +..++|.- . + +.|.++.+.|.|..+.. |-.+.+ .+.+..+++-+
T Consensus 15 ~~~~~~~~---~~~i~y~~--~-G---~~~~iv~lHG~~~~~~~-~~~~~~------------------~l~~~~~vi~~ 66 (286)
T PRK03204 15 ESRWFDSS---RGRIHYID--E-G---TGPPILLCHGNPTWSFL-YRDIIV------------------ALRDRFRCVAP 66 (286)
T ss_pred cceEEEcC---CcEEEEEE--C-C---CCCEEEEECCCCccHHH-HHHHHH------------------HHhCCcEEEEE
Confidence 34467774 34565442 2 1 24678889998754444 432221 11223689999
Q ss_pred ecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 161 GKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 161 D~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
|.| |.|.|.... + ..++. ++.++ .+..++++. ...+.+++|.|+||.-.
T Consensus 67 D~~-G~G~S~~~~--~--~~~~~-----~~~~~----~~~~~~~~~---~~~~~~lvG~S~Gg~va 115 (286)
T PRK03204 67 DYL-GFGLSERPS--G--FGYQI-----DEHAR----VIGEFVDHL---GLDRYLSMGQDWGGPIS 115 (286)
T ss_pred CCC-CCCCCCCCC--c--cccCH-----HHHHH----HHHHHHHHh---CCCCEEEEEECccHHHH
Confidence 966 888885321 1 01121 12333 334444332 22468899999999643
No 45
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=1.5 Score=45.94 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=65.6
Q ss_pred CceEEEEEEecCC--CCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCC-CceeeeecCcccce
Q 041087 92 GRSLFYYFAESPQ--NSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNG-DKTLRLGKRDILGI 168 (250)
Q Consensus 92 ~~~lFY~f~ea~~--~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~-anlLfID~PvGtGf 168 (250)
+-...+++...++ +.++-||+++.-|||++-+. .+=+ .+..|.+.+.+. +=++-|| +-|+|+
T Consensus 507 ~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v-------~~~~-------~~~~~~~~~s~~g~~v~~vd-~RGs~~ 571 (755)
T KOG2100|consen 507 GITANAILILPPNFDPSKKYPLLVVVYGGPGSQSV-------TSKF-------SVDWNEVVVSSRGFAVLQVD-GRGSGG 571 (755)
T ss_pred cEEEEEEEecCCCCCCCCCCCEEEEecCCCCccee-------eeeE-------EecHHHHhhccCCeEEEEEc-CCCcCC
Confidence 4556666666543 45678999999999993322 1111 223333333332 3477888 778888
Q ss_pred eecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 169 QRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 169 S~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
++.+.-.. -.... +.-+++|-...++.+++.+ ..-.....|+|=||||.-.-
T Consensus 572 -~G~~~~~~-~~~~l----G~~ev~D~~~~~~~~~~~~-~iD~~ri~i~GwSyGGy~t~ 623 (755)
T KOG2100|consen 572 -YGWDFRSA-LPRNL----GDVEVKDQIEAVKKVLKLP-FIDRSRVAIWGWSYGGYLTL 623 (755)
T ss_pred -cchhHHHH-hhhhc----CCcchHHHHHHHHHHHhcc-cccHHHeEEeccChHHHHHH
Confidence 44321110 01122 2234566666677777665 33334489999999997554
No 46
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=83.81 E-value=2.6 Score=40.45 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=62.7
Q ss_pred ceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCce
Q 041087 78 FDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKT 157 (250)
Q Consensus 78 ~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anl 157 (250)
+++-+++.... ++-++||.- . .+..+|.|+.+.|.|+.+.. |-.+.+. | .+..++
T Consensus 102 ~~~~~~~~~~~--~~~~~~y~~--~--G~~~~~~ivllHG~~~~~~~-w~~~~~~-----------L-------~~~~~V 156 (383)
T PLN03084 102 LKMGAQSQASS--DLFRWFCVE--S--GSNNNPPVLLIHGFPSQAYS-YRKVLPV-----------L-------SKNYHA 156 (383)
T ss_pred ccccceeEEcC--CceEEEEEe--c--CCCCCCeEEEECCCCCCHHH-HHHHHHH-----------H-------hcCCEE
Confidence 34445554432 345566543 2 23456889999999877655 4443321 1 123689
Q ss_pred eeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 158 LRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 158 LfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
+-+|.| |.|.|....... ..-++. +..++++..|+++. ...+.+++|.|+||.-+..+|
T Consensus 157 ia~Dlp-G~G~S~~p~~~~-~~~ys~-----~~~a~~l~~~i~~l-------~~~~~~LvG~s~GG~ia~~~a 215 (383)
T PLN03084 157 IAFDWL-GFGFSDKPQPGY-GFNYTL-----DEYVSSLESLIDEL-------KSDKVSLVVQGYFSPPVVKYA 215 (383)
T ss_pred EEECCC-CCCCCCCCcccc-cccCCH-----HHHHHHHHHHHHHh-------CCCCceEEEECHHHHHHHHHH
Confidence 999977 999986532110 001222 23344454455442 123577899999986543333
No 47
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=83.31 E-value=0.91 Score=37.36 Aligned_cols=59 Identities=8% Similarity=-0.073 Sum_probs=35.8
Q ss_pred ceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecc
Q 041087 156 KTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYN 228 (250)
Q Consensus 156 nlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ 228 (250)
+|+-+|+| |.|+|......+ ... -..+++.+.+..++++.+.- .++++|-|+||.-+-.
T Consensus 2 ~vi~~d~r-G~g~S~~~~~~~---~~~-------~~~~~~~~~~~~~~~~l~~~---~~~~vG~S~Gg~~~~~ 60 (230)
T PF00561_consen 2 DVILFDLR-GFGYSSPHWDPD---FPD-------YTTDDLAADLEALREALGIK---KINLVGHSMGGMLALE 60 (230)
T ss_dssp EEEEEECT-TSTTSSSCCGSG---SCT-------HCHHHHHHHHHHHHHHHTTS---SEEEEEETHHHHHHHH
T ss_pred EEEEEeCC-CCCCCCCCccCC---ccc-------ccHHHHHHHHHHHHHHhCCC---CeEEEEECCChHHHHH
Confidence 67889966 999998410001 111 11334556666666654332 3889999999976643
No 48
>PRK03592 haloalkane dehalogenase; Provisional
Probab=81.95 E-value=2.3 Score=37.65 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=57.8
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
+.+++|.-.- +.|.|+++.|.|+.+.. |-.+.+. | .+...++-+|.| |-|.|..
T Consensus 16 g~~i~y~~~G------~g~~vvllHG~~~~~~~-w~~~~~~-----------L-------~~~~~via~D~~-G~G~S~~ 69 (295)
T PRK03592 16 GSRMAYIETG------EGDPIVFLHGNPTSSYL-WRNIIPH-----------L-------AGLGRCLAPDLI-GMGASDK 69 (295)
T ss_pred CEEEEEEEeC------CCCEEEEECCCCCCHHH-HHHHHHH-----------H-------hhCCEEEEEcCC-CCCCCCC
Confidence 4566665321 34778888999988777 5443321 1 112378999977 8888864
Q ss_pred ccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 172 WGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 172 ~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
... -++. +..++++.++++.. ...+.+++|-|.||.-...++.
T Consensus 70 ~~~-----~~~~-----~~~a~dl~~ll~~l-------~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 70 PDI-----DYTF-----ADHARYLDAWFDAL-------GLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred CCC-----CCCH-----HHHHHHHHHHHHHh-------CCCCeEEEEECHHHHHHHHHHH
Confidence 311 1222 23455555555442 2256888999999976654443
No 49
>PLN02511 hydrolase
Probab=81.94 E-value=3.9 Score=38.88 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=60.3
Q ss_pred EEEecCCCCceEEEEEEec--CCCCCCCCceEeeCCCCcchhhhhh-hhhhhCCeEEcCCCCeeeecCCCCcCCCceeee
Q 041087 84 YVTVDPKSGRSLFYYFAES--PQNSSTNPSLLWLDGGPGCSSLAYG-AVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRL 160 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea--~~~~~~~PlvlWlNGGPGcSSl~~g-~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfI 160 (250)
++... +|..+.+..+.. ...+.++|+|+.+.|..|+|.-.|- .+.. .+ ..+-.+++-+
T Consensus 75 ~l~~~--DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~-----------~~------~~~g~~vv~~ 135 (388)
T PLN02511 75 CLRTP--DGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLL-----------RA------RSKGWRVVVF 135 (388)
T ss_pred EEECC--CCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHH-----------HH------HHCCCEEEEE
Confidence 44443 345565544432 1235678999999998887632121 1110 00 0123578889
Q ss_pred ecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 161 GKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 161 D~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
|.+ |.|-|... ...++.. ..++++.++++....++| ..+++++|.|.||.-+
T Consensus 136 d~r-G~G~s~~~----~~~~~~~------~~~~Dl~~~i~~l~~~~~---~~~~~lvG~SlGg~i~ 187 (388)
T PLN02511 136 NSR-GCADSPVT----TPQFYSA------SFTGDLRQVVDHVAGRYP---SANLYAAGWSLGANIL 187 (388)
T ss_pred ecC-CCCCCCCC----CcCEEcC------CchHHHHHHHHHHHHHCC---CCCEEEEEechhHHHH
Confidence 977 66666432 1122221 224455555555444554 3578999999999544
No 50
>PRK06489 hypothetical protein; Provisional
Probab=81.43 E-value=4.1 Score=37.81 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=40.8
Q ss_pred CceeEEeEEEecCCCCceEEEEEEecC---CCCCCCCceEeeCCCCcchhhhhh--hhhhhCCeEEcCCCCeeeecCCCC
Q 041087 77 DFDQYSGYVTVDPKSGRSLFYYFAESP---QNSSTNPSLLWLDGGPGCSSLAYG--AVTESGSFRMNKDGKTLFRNNYAW 151 (250)
Q Consensus 77 ~~~~ysGyv~v~~~~~~~lFY~f~ea~---~~~~~~PlvlWlNGGPGcSSl~~g--~~~e~GP~~v~~~~~~l~~N~~SW 151 (250)
+|...+|. ++ .+..++|.-+-.. .+.++.|.|+.+.|++|.+.. |- .+. +..+.. +..--
T Consensus 38 ~~~~~~~~-~~---~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~-~~~~~~~---~~l~~~-------~~~l~ 102 (360)
T PRK06489 38 DFTFHSGE-TL---PELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKS-FLSPTFA---GELFGP-------GQPLD 102 (360)
T ss_pred ceeccCCC-Cc---CCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhh-hccchhH---HHhcCC-------CCccc
Confidence 35555564 22 2456776644221 022336889999999876544 21 000 000000 00000
Q ss_pred cCCCceeeeecCcccceeec
Q 041087 152 NNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 152 ~~~anlLfID~PvGtGfS~~ 171 (250)
.+...++.+|.| |.|.|..
T Consensus 103 ~~~~~Via~Dl~-GhG~S~~ 121 (360)
T PRK06489 103 ASKYFIILPDGI-GHGKSSK 121 (360)
T ss_pred ccCCEEEEeCCC-CCCCCCC
Confidence 234689999987 9998864
No 51
>PRK10985 putative hydrolase; Provisional
Probab=79.46 E-value=5 Score=36.77 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=20.6
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchh
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSS 123 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSS 123 (250)
|..+.+++......+.++|+|+.+.|.+|++.
T Consensus 41 g~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~ 72 (324)
T PRK10985 41 GDFVDLAWSEDPAQARHKPRLVLFHGLEGSFN 72 (324)
T ss_pred CCEEEEecCCCCccCCCCCEEEEeCCCCCCCc
Confidence 44444444333334567899999999988753
No 52
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=79.00 E-value=2.6 Score=34.43 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhc
Q 041087 109 NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVK 188 (250)
Q Consensus 109 ~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~ 188 (250)
+|.|+.+.|.++.+.. |-.+.+ .+ .+..+++.+|.| |.|.|.... ..+.
T Consensus 4 ~~~iv~~HG~~~~~~~-~~~~~~-----------~l-------~~~~~vi~~d~~-G~G~s~~~~------~~~~----- 52 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEV-FRCLDE-----------EL-------SAHFTLHLVDLP-GHGRSRGFG------PLSL----- 52 (245)
T ss_pred CceEEEEcCCCCchhh-HHHHHH-----------hh-------ccCeEEEEecCC-cCccCCCCC------CcCH-----
Confidence 4788999987655544 433221 11 113689999976 888774321 1122
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 189 NSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 189 ~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
++.+++ +...+ ..+.+++|.|+||.-+..++
T Consensus 53 ~~~~~~----~~~~~-------~~~~~lvG~S~Gg~~a~~~a 83 (245)
T TIGR01738 53 ADAAEA----IAAQA-------PDPAIWLGWSLGGLVALHIA 83 (245)
T ss_pred HHHHHH----HHHhC-------CCCeEEEEEcHHHHHHHHHH
Confidence 122332 22221 24678999999997665444
No 53
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=78.88 E-value=9.1 Score=35.47 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=66.7
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhh-------CCeEEcCCCCeeeec---CCCC-cCCCceee
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTES-------GSFRMNKDGKTLFRN---NYAW-NNGDKTLR 159 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~-------GP~~v~~~~~~l~~N---~~SW-~~~anlLf 159 (250)
+|..++++.++.+ ..+.+|+.+.|==+.+.. -.+.-+ +|+.|+.+.+ ...+ .... .+-.+|+-
T Consensus 6 ~g~~l~~~~~~~~---~~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry-~~y~~~~~~~l~~~G~~V~~ 79 (332)
T TIGR01607 6 DGLLLKTYSWIVK---NAIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNY-YIYKDSWIENFNKNGYSVYG 79 (332)
T ss_pred CCCeEEEeeeecc---CCeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcc-eEeeHHHHHHHHHCCCcEEE
Confidence 4677888887764 346789998883233321 111111 2333432211 0000 0012 23368999
Q ss_pred eecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhc----------------cccc-cccccccccccC
Q 041087 160 LGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERN----------------TKEC-SDSRDEAADEIG 222 (250)
Q Consensus 160 ID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~----------------P~y~-~~~l~i~gESYg 222 (250)
+|.| |.|-|.+.... ...+.+. ++.++++..+++...+.. .++. ..+++++|.|.|
T Consensus 80 ~D~r-GHG~S~~~~~~-~g~~~~~-----~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmG 152 (332)
T TIGR01607 80 LDLQ-GHGESDGLQNL-RGHINCF-----DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMG 152 (332)
T ss_pred eccc-ccCCCcccccc-ccchhhH-----HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCc
Confidence 9976 99998754211 1112222 345667777776654310 1232 568999999999
Q ss_pred Cceecc
Q 041087 223 DIDIYN 228 (250)
Q Consensus 223 G~~ip~ 228 (250)
|.-+..
T Consensus 153 g~i~~~ 158 (332)
T TIGR01607 153 GNIALR 158 (332)
T ss_pred cHHHHH
Confidence 965443
No 54
>PLN02578 hydrolase
Probab=77.51 E-value=7.1 Score=36.22 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=36.7
Q ss_pred CCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 154 GDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 154 ~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
..+++-+|.| |.|.|..... -++. +..++++.+|+++.. ..+.+++|.|+||.-...+|
T Consensus 112 ~~~v~~~D~~-G~G~S~~~~~-----~~~~-----~~~a~~l~~~i~~~~-------~~~~~lvG~S~Gg~ia~~~A 170 (354)
T PLN02578 112 KYKVYALDLL-GFGWSDKALI-----EYDA-----MVWRDQVADFVKEVV-------KEPAVLVGNSLGGFTALSTA 170 (354)
T ss_pred CCEEEEECCC-CCCCCCCccc-----ccCH-----HHHHHHHHHHHHHhc-------cCCeEEEEECHHHHHHHHHH
Confidence 3689999988 8888754311 1222 234555666665543 25678999999997444333
No 55
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.11 E-value=4.9 Score=38.13 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=59.2
Q ss_pred CCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCc-----eeeeecCcc
Q 041087 91 SGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDK-----TLRLGKRDI 165 (250)
Q Consensus 91 ~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~an-----lLfID~PvG 165 (250)
++.+.-||+|+-..-++..|||+.|.|+-|...- + .+-..|+++|+ |+|-| |
T Consensus 43 ~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag-~-------------------~~~sg~d~lAd~~gFlV~yPd---g 99 (312)
T COG3509 43 NGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAG-Q-------------------LHGTGWDALADREGFLVAYPD---G 99 (312)
T ss_pred CCCccceEEEcCCCCCCCCCEEEEEecCCCChHH-h-------------------hcccchhhhhcccCcEEECcC---c
Confidence 3567789999887778888999999998665433 1 22335666665 55554 2
Q ss_pred cceeeccc-----CCccccccchhhhhchHHHHHHHHHHHHHHHh-ccccccc--cccccccccCCceec
Q 041087 166 LGIQRGWG-----FGTQVQLRTISLMVKNSMIKIHIPFLIKWLER-NTKECSD--SRDEAADEIGDIDIY 227 (250)
Q Consensus 166 tGfS~~~~-----~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~-~P~y~~~--~l~i~gESYgG~~ip 227 (250)
...+-... +.....-... +++ .||++..++ -.||+.+ .+|++|=|-||.=.-
T Consensus 100 ~~~~wn~~~~~~~~~p~~~~~g~------ddV----gflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~ 159 (312)
T COG3509 100 YDRAWNANGCGNWFGPADRRRGV------DDV----GFLRALVAKLVNEYGIDPARVYVTGLSNGGRMAN 159 (312)
T ss_pred cccccCCCcccccCCcccccCCc------cHH----HHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHH
Confidence 22221000 0000001111 223 355555444 3466666 489999999997654
No 56
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=75.88 E-value=7 Score=35.45 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=63.1
Q ss_pred CCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCC---ccccccchhh
Q 041087 109 NPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFG---TQVQLRTISL 185 (250)
Q Consensus 109 ~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~---~~~~~~~~~~ 185 (250)
+++++|+-|=||.-.. |--|.+. |..+- +....++=+.. .|++...... ...+.++.
T Consensus 2 ~~li~~IPGNPGlv~f-Y~~Fl~~-----------L~~~l---~~~~~i~~ish---~Gh~~~~~~~~~~~~~~~~sL-- 61 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEF-YEEFLSA-----------LYEKL---NPQFEILGISH---AGHSTSPSNSKFSPNGRLFSL-- 61 (266)
T ss_pred cEEEEEECCCCChHHH-HHHHHHH-----------HHHhC---CCCCeeEEecC---CCCcCCcccccccCCCCccCH--
Confidence 6899999999999888 7666542 22111 33455555653 3666654321 12234454
Q ss_pred hhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 186 MVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 186 ~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
++.+++.++||++++...+ ....+++++|-|.|..=+-.|+
T Consensus 62 ---~~QI~hk~~~i~~~~~~~~-~~~~~liLiGHSIGayi~levl 102 (266)
T PF10230_consen 62 ---QDQIEHKIDFIKELIPQKN-KPNVKLILIGHSIGAYIALEVL 102 (266)
T ss_pred ---HHHHHHHHHHHHHHhhhhc-CCCCcEEEEeCcHHHHHHHHHH
Confidence 3568889999999998765 3456799999999975443333
No 57
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=74.46 E-value=7.9 Score=44.04 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=55.4
Q ss_pred CCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCcc---cccc
Q 041087 105 NSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQ---VQLR 181 (250)
Q Consensus 105 ~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~---~~~~ 181 (250)
+..++|.|+++.|.+|.+.. |-.+.+ .+ .+..+++.+|.| |-|.|........ ....
T Consensus 1367 ~~~~~~~vVllHG~~~s~~~-w~~~~~-----------~L-------~~~~rVi~~Dl~-G~G~S~~~~~~~~~~~~~~~ 1426 (1655)
T PLN02980 1367 QNAEGSVVLFLHGFLGTGED-WIPIMK-----------AI-------SGSARCISIDLP-GHGGSKIQNHAKETQTEPTL 1426 (1655)
T ss_pred CCCCCCeEEEECCCCCCHHH-HHHHHH-----------HH-------hCCCEEEEEcCC-CCCCCCCccccccccccccC
Confidence 34567899999999888876 544332 11 122689999977 8888754321000 0011
Q ss_pred chhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 182 TISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 182 ~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+. +..++++ .+++++ ...++++++|.|+||.-...++.
T Consensus 1427 si-----~~~a~~l----~~ll~~---l~~~~v~LvGhSmGG~iAl~~A~ 1464 (1655)
T PLN02980 1427 SV-----ELVADLL----YKLIEH---ITPGKVTLVGYSMGARIALYMAL 1464 (1655)
T ss_pred CH-----HHHHHHH----HHHHHH---hCCCCEEEEEECHHHHHHHHHHH
Confidence 21 2334434 444333 12356889999999987765554
No 58
>PRK10349 carboxylesterase BioH; Provisional
Probab=73.76 E-value=5.2 Score=34.49 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=48.8
Q ss_pred CceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhhhhch
Q 041087 110 PSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKN 189 (250)
Q Consensus 110 PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~ 189 (250)
|.|+.+.|.++++.. |-.+.+ .+.+..+++.+|.| |.|.|.... ..+. +
T Consensus 14 ~~ivllHG~~~~~~~-w~~~~~------------------~L~~~~~vi~~Dl~-G~G~S~~~~------~~~~-----~ 62 (256)
T PRK10349 14 VHLVLLHGWGLNAEV-WRCIDE------------------ELSSHFTLHLVDLP-GFGRSRGFG------ALSL-----A 62 (256)
T ss_pred CeEEEECCCCCChhH-HHHHHH------------------HHhcCCEEEEecCC-CCCCCCCCC------CCCH-----H
Confidence 458999998777766 543322 11244789999977 888886321 1222 1
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 190 SMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 190 ~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+.++++ .+ +......++|.|+||.-+..+|.
T Consensus 63 ~~~~~l----~~-------~~~~~~~lvGhS~Gg~ia~~~a~ 93 (256)
T PRK10349 63 DMAEAV----LQ-------QAPDKAIWLGWSLGGLVASQIAL 93 (256)
T ss_pred HHHHHH----Hh-------cCCCCeEEEEECHHHHHHHHHHH
Confidence 233322 21 12356789999999987765554
No 59
>PLN02442 S-formylglutathione hydrolase
Probab=72.17 E-value=24 Score=31.88 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=22.7
Q ss_pred CCceEEEEEEecC-CCCCCCCceEeeCCCCcch
Q 041087 91 SGRSLFYYFAESP-QNSSTNPSLLWLDGGPGCS 122 (250)
Q Consensus 91 ~~~~lFY~f~ea~-~~~~~~PlvlWlNGGPGcS 122 (250)
-++.+-|+.|.-+ .+..+.|||++|.|++|..
T Consensus 28 l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~ 60 (283)
T PLN02442 28 LGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTD 60 (283)
T ss_pred cCCceEEEEEcCCcccCCCCCEEEEecCCCcCh
Confidence 3566777766443 3346789999999988764
No 60
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=71.61 E-value=20 Score=33.11 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=75.3
Q ss_pred eeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCcee
Q 041087 79 DQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTL 158 (250)
Q Consensus 79 ~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlL 158 (250)
...-|+.... .+..++|+.+.+.+++. .+|+++.|.=.++.- |-.+.+. +..+. .+++
T Consensus 8 ~~~~~~~~~~--d~~~~~~~~~~~~~~~~--g~Vvl~HG~~Eh~~r-y~~la~~-----------l~~~G------~~V~ 65 (298)
T COG2267 8 TRTEGYFTGA--DGTRLRYRTWAAPEPPK--GVVVLVHGLGEHSGR-YEELADD-----------LAARG------FDVY 65 (298)
T ss_pred ccccceeecC--CCceEEEEeecCCCCCC--cEEEEecCchHHHHH-HHHHHHH-----------HHhCC------CEEE
Confidence 3344444443 36889999998875544 899999998666655 4432211 22222 5677
Q ss_pred eeecCcccceee-cccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec--------cc
Q 041087 159 RLGKRDILGIQR-GWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY--------NI 229 (250)
Q Consensus 159 fID~PvGtGfS~-~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip--------~i 229 (250)
=+|.| |.|-|. +.. ...... .+..+++..|++.-... ....+++++|-|-||--+. .|
T Consensus 66 ~~D~R-GhG~S~r~~r----g~~~~f-----~~~~~dl~~~~~~~~~~---~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i 132 (298)
T COG2267 66 ALDLR-GHGRSPRGQR----GHVDSF-----ADYVDDLDAFVETIAEP---DPGLPVFLLGHSMGGLIALLYLARYPPRI 132 (298)
T ss_pred EecCC-CCCCCCCCCc----CCchhH-----HHHHHHHHHHHHHHhcc---CCCCCeEEEEeCcHHHHHHHHHHhCCccc
Confidence 79988 999996 221 111222 23344454555544443 4556789999999996543 33
Q ss_pred ccccccCCcccC
Q 041087 230 CAPICISPTFGN 241 (250)
Q Consensus 230 a~~~~~~~~~~~ 241 (250)
..-+..+|.|+=
T Consensus 133 ~~~vLssP~~~l 144 (298)
T COG2267 133 DGLVLSSPALGL 144 (298)
T ss_pred cEEEEECccccC
Confidence 333346665553
No 61
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=70.28 E-value=9.4 Score=35.11 Aligned_cols=60 Identities=5% Similarity=-0.177 Sum_probs=33.5
Q ss_pred CCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 153 NGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 153 ~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+...|+.+|.| |.|=|. .. .++. ++.++++.++|... -+.+...++|-|+||.-.-.+|.
T Consensus 98 ~~~~Vi~~Dl~-G~g~s~----~~---~~~~-----~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~ 157 (343)
T PRK08775 98 ARFRLLAFDFI-GADGSL----DV---PIDT-----ADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFAS 157 (343)
T ss_pred cccEEEEEeCC-CCCCCC----CC---CCCH-----HHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHH
Confidence 34789999988 544331 11 1222 23455565555442 11123468999999976655444
No 62
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=67.17 E-value=9.7 Score=34.06 Aligned_cols=60 Identities=10% Similarity=-0.132 Sum_probs=35.3
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccc
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNI 229 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~i 229 (250)
.+++-+|.| |.|-|.... .+. +...+++..+++...++.|.+ ..+.++|-|.||.-.-..
T Consensus 58 ~~v~~~Dl~-G~G~S~~~~-------~~~-----~~~~~d~~~~~~~l~~~~~g~--~~i~l~G~S~Gg~~a~~~ 117 (274)
T TIGR03100 58 FPVLRFDYR-GMGDSEGEN-------LGF-----EGIDADIAAAIDAFREAAPHL--RRIVAWGLCDAASAALLY 117 (274)
T ss_pred CEEEEeCCC-CCCCCCCCC-------CCH-----HHHHHHHHHHHHHHHhhCCCC--CcEEEEEECHHHHHHHHH
Confidence 678889977 888775321 121 122334445555444444433 347889999999765433
No 63
>PRK07581 hypothetical protein; Validated
Probab=66.58 E-value=15 Score=33.53 Aligned_cols=72 Identities=6% Similarity=-0.135 Sum_probs=34.4
Q ss_pred CCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhcccccccc-ccccccccCCceeccccc
Q 041087 154 GDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDS-RDEAADEIGDIDIYNICA 231 (250)
Q Consensus 154 ~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~-l~i~gESYgG~~ip~ia~ 231 (250)
...+|-+|.| |.|.|....... . .++...+-....++++.. +.+.+.++ +.... ..++|-|+||.-...+|.
T Consensus 71 ~~~vi~~D~~-G~G~S~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~l~~~--lgi~~~~~lvG~S~GG~va~~~a~ 143 (339)
T PRK07581 71 KYFIIIPNMF-GNGLSSSPSNTP-A-PFNAARFPHVTIYDNVRA-QHRLLTEK--FGIERLALVVGWSMGAQQTYHWAV 143 (339)
T ss_pred ceEEEEecCC-CCCCCCCCCCCC-C-CCCCCCCCceeHHHHHHH-HHHHHHHH--hCCCceEEEEEeCHHHHHHHHHHH
Confidence 3678999988 999886432110 0 111110000012333322 22222221 12233 467899999987765544
No 64
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=65.84 E-value=16 Score=36.46 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=66.4
Q ss_pred ceeEEeEEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhh-h-hhhCCeEEcCCCCeeeecCCCCcCCC
Q 041087 78 FDQYSGYVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGA-V-TESGSFRMNKDGKTLFRNNYAWNNGD 155 (250)
Q Consensus 78 ~~~ysGyv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~-~-~e~GP~~v~~~~~~l~~N~~SW~~~a 155 (250)
.+...-|++.+ +..+||....... ...+|.|+++.|.++.+.. |.. + ..+ .. .+.+..
T Consensus 174 ~~~~~~~~~~~---~~~l~~~~~gp~~-~~~k~~VVLlHG~~~s~~~-W~~~~~~~L------------~~---~~~~~y 233 (481)
T PLN03087 174 CKFCTSWLSSS---NESLFVHVQQPKD-NKAKEDVLFIHGFISSSAF-WTETLFPNF------------SD---AAKSTY 233 (481)
T ss_pred cceeeeeEeeC---CeEEEEEEecCCC-CCCCCeEEEECCCCccHHH-HHHHHHHHH------------HH---HhhCCC
Confidence 44455666664 3577777765432 2335788999999888776 442 1 111 10 123346
Q ss_pred ceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 156 KTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 156 nlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
.++-+|.| |.|-|.... . ..++. ++.++++. +.+++.. ...+.+++|.|.||.-+-.+|.
T Consensus 234 rVia~Dl~-G~G~S~~p~--~--~~ytl-----~~~a~~l~---~~ll~~l---g~~k~~LVGhSmGG~iAl~~A~ 293 (481)
T PLN03087 234 RLFAVDLL-GFGRSPKPA--D--SLYTL-----REHLEMIE---RSVLERY---KVKSFHIVAHSLGCILALALAV 293 (481)
T ss_pred EEEEECCC-CCCCCcCCC--C--CcCCH-----HHHHHHHH---HHHHHHc---CCCCEEEEEECHHHHHHHHHHH
Confidence 78899977 777774321 1 11232 12233221 2344432 2356889999999987765544
No 65
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=63.92 E-value=31 Score=32.91 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=69.5
Q ss_pred EEeEEEecCCCCceEEEEEEecCC-CC-CCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCc-CCCce
Q 041087 81 YSGYVTVDPKSGRSLFYYFAESPQ-NS-STNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWN-NGDKT 157 (250)
Q Consensus 81 ysGyv~v~~~~~~~lFY~f~ea~~-~~-~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~-~~anl 157 (250)
.+.-|+++ ....+.-..|.... .+ .++|+++|+.||--|-+.. .. ....+--++. +.+|.
T Consensus 62 ~~~dv~~~--~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~--------~~-------~~y~~~~~~~a~~~~~ 124 (336)
T KOG1515|consen 62 TSKDVTID--PFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSA--------NS-------PAYDSFCTRLAAELNC 124 (336)
T ss_pred eeeeeEec--CCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCC--------CC-------chhHHHHHHHHHHcCe
Confidence 34444444 35778888888664 33 6999999999996664421 00 0011111222 33454
Q ss_pred eeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHH-HHHhccccccccccccccccCCceecccccccccC
Q 041087 158 LRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIK-WLERNTKECSDSRDEAADEIGDIDIYNICAPICIS 236 (250)
Q Consensus 158 LfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~-fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~~~~~ 236 (250)
+.| .++|=.+. ....+ ... ++..+++..++.+ |++.+-.+.+ .+|+|+|-||=-+..||...+++
T Consensus 125 vvv----SVdYRLAP-Eh~~P--a~y-----~D~~~Al~w~~~~~~~~~~~D~~r--v~l~GDSaGGNia~~va~r~~~~ 190 (336)
T KOG1515|consen 125 VVV----SVDYRLAP-EHPFP--AAY-----DDGWAALKWVLKNSWLKLGADPSR--VFLAGDSAGGNIAHVVAQRAADE 190 (336)
T ss_pred EEE----ecCcccCC-CCCCC--ccc-----hHHHHHHHHHHHhHHHHhCCCccc--EEEEccCccHHHHHHHHHHHhhc
Confidence 443 34553332 11111 111 1223334445555 9998755554 89999999997777777665543
No 66
>COG4099 Predicted peptidase [General function prediction only]
Probab=63.80 E-value=54 Score=31.73 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=59.8
Q ss_pred CCCceEEEEEEecCC-C--CCCCCceEeeCC-CCcchhhhhhh-hhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCc
Q 041087 90 KSGRSLFYYFAESPQ-N--SSTNPSLLWLDG-GPGCSSLAYGA-VTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRD 164 (250)
Q Consensus 90 ~~~~~lFY~f~ea~~-~--~~~~PlvlWlNG-GPGcSSl~~g~-~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~Pv 164 (250)
+.+..|-|-+|.-+. + .+.-|||+||.| |-+.+-. .-. .+..|-...... -+=-||=+|-
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~p--------------edqcfVlAPQ 233 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGP--------------EDQCFVLAPQ 233 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecc--------------cCceEEEccc
Confidence 457899999998652 2 233499999999 4443322 122 122222222111 1113333342
Q ss_pred ccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 165 ILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 165 GtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
|+......+. .+ +.+....++.|..=+..++.--+..+|++|-|=||+---+++
T Consensus 234 ---y~~if~d~e~---~t------~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~ 287 (387)
T COG4099 234 ---YNPIFADSEE---KT------LLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALA 287 (387)
T ss_pred ---cccccccccc---cc------chhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHH
Confidence 2222111110 11 122334556667666777777778899999998887654443
No 67
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=61.69 E-value=13 Score=33.32 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 196 IPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 196 ~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+..|.+++..+..--.+.+|++|-|=||.-...++-
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~ 116 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLAC 116 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHH
Confidence 344445555544444556899999999876654443
No 68
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=60.99 E-value=2.6 Score=41.34 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=42.6
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
-+||=||-| |||+|....... + .+.+..-+-.|+..-|..-...+-++|-|.||.+.+.+|
T Consensus 219 iA~LtvDmP-G~G~s~~~~l~~-----D---------~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA 279 (411)
T PF06500_consen 219 IAMLTVDMP-GQGESPKWPLTQ-----D---------SSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLA 279 (411)
T ss_dssp -EEEEE--T-TSGGGTTT-S-S---------------CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHH
T ss_pred CEEEEEccC-CCcccccCCCCc-----C---------HHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHH
Confidence 579999999 999985432111 0 112345667778888998888899999999999998776
No 69
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=60.04 E-value=5.4 Score=33.76 Aligned_cols=71 Identities=8% Similarity=-0.082 Sum_probs=42.8
Q ss_pred CCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 153 NGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 153 ~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+-..|+.+|.+.+.||+....... ..+. +..+++|+...++.. .+.+..-.+.+.++|-|+||+-.-.++.
T Consensus 13 ~Gy~v~~~~~rGs~g~g~~~~~~~------~~~~-~~~~~~D~~~~i~~l-~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 13 QGYAVLVPNYRGSGGYGKDFHEAG------RGDW-GQADVDDVVAAIEYL-IKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp TT-EEEEEE-TTSSSSHHHHHHTT------TTGT-THHHHHHHHHHHHHH-HHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCccchhHHHhh------hccc-cccchhhHHHHHHHH-hccccccceeEEEEcccccccccchhhc
Confidence 336789999888888877542111 1111 123456665555544 4444555567899999999998765544
No 70
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=58.94 E-value=40 Score=25.08 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=37.6
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
|.+|||..+..++. .+.+|+.+.|=-..|.. |..+.+ + |..+. .+|+-+|.. |.|.|.+
T Consensus 1 G~~L~~~~w~p~~~--~k~~v~i~HG~~eh~~r-y~~~a~---~--------L~~~G------~~V~~~D~r-GhG~S~g 59 (79)
T PF12146_consen 1 GTKLFYRRWKPENP--PKAVVVIVHGFGEHSGR-YAHLAE---F--------LAEQG------YAVFAYDHR-GHGRSEG 59 (79)
T ss_pred CcEEEEEEecCCCC--CCEEEEEeCCcHHHHHH-HHHHHH---H--------HHhCC------CEEEEECCC-cCCCCCC
Confidence 34688887776533 68999999986444443 444432 1 22222 467779966 9999974
No 71
>PLN02965 Probable pheophorbidase
Probab=57.90 E-value=11 Score=32.79 Aligned_cols=61 Identities=10% Similarity=-0.058 Sum_probs=36.3
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
..++-+|.| |.|.|..... ..++. +++++++.++|. +-. ..++.+++|-|+||.-+..++.
T Consensus 31 ~~via~Dl~-G~G~S~~~~~----~~~~~-----~~~a~dl~~~l~----~l~--~~~~~~lvGhSmGG~ia~~~a~ 91 (255)
T PLN02965 31 FKSTCVDLT-GAGISLTDSN----TVSSS-----DQYNRPLFALLS----DLP--PDHKVILVGHSIGGGSVTEALC 91 (255)
T ss_pred ceEEEecCC-cCCCCCCCcc----ccCCH-----HHHHHHHHHHHH----hcC--CCCCEEEEecCcchHHHHHHHH
Confidence 468889977 9998853211 11222 234554544444 321 1147889999999986665554
No 72
>PLN02872 triacylglycerol lipase
Probab=56.76 E-value=19 Score=34.78 Aligned_cols=100 Identities=11% Similarity=-0.063 Sum_probs=53.1
Q ss_pred CCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccC--Cccccccchh
Q 041087 107 STNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGF--GTQVQLRTIS 184 (250)
Q Consensus 107 ~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~--~~~~~~~~~~ 184 (250)
.++|.|+.+.|..+++.. |.. ++|.+- =...|.. +-.++.-.|.. |.|+|++... .+..+++..+
T Consensus 72 ~~~~~Vll~HGl~~ss~~-w~~---~~~~~s--la~~La~------~GydV~l~n~R-G~~~s~gh~~~~~~~~~fw~~s 138 (395)
T PLN02872 72 QRGPPVLLQHGLFMAGDA-WFL---NSPEQS--LGFILAD------HGFDVWVGNVR-GTRWSYGHVTLSEKDKEFWDWS 138 (395)
T ss_pred CCCCeEEEeCcccccccc-eee---cCcccc--hHHHHHh------CCCCccccccc-ccccccCCCCCCccchhccCCc
Confidence 457899999998877766 422 222100 0001111 11466667765 8888865321 1122232221
Q ss_pred hhhchHHH-HHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 185 LMVKNSMI-KIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 185 ~~V~~~~a-~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
. ++.+ .|+.++|+..++.. ..+++++|-|.||.-.
T Consensus 139 ~---~e~a~~Dl~a~id~i~~~~----~~~v~~VGhS~Gg~~~ 174 (395)
T PLN02872 139 W---QELALYDLAEMIHYVYSIT----NSKIFIVGHSQGTIMS 174 (395)
T ss_pred H---HHHHHHHHHHHHHHHHhcc----CCceEEEEECHHHHHH
Confidence 1 2334 45555555555432 2478999999999744
No 73
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=54.90 E-value=38 Score=32.37 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCcccceeecccCCccccccchhh
Q 041087 106 SSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRGWGFGTQVQLRTISL 185 (250)
Q Consensus 106 ~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~ 185 (250)
...-|+++.+.|| |.|.|.|..|..- ++ +...+ -+|-+| --|.|=+......+ +.
T Consensus 71 ~t~gpil~l~HG~-G~S~LSfA~~a~e----l~----s~~~~--------r~~a~D-lRgHGeTk~~~e~d---lS---- 125 (343)
T KOG2564|consen 71 ATEGPILLLLHGG-GSSALSFAIFASE----LK----SKIRC--------RCLALD-LRGHGETKVENEDD---LS---- 125 (343)
T ss_pred CCCccEEEEeecC-cccchhHHHHHHH----HH----hhcce--------eEEEee-ccccCccccCChhh---cC----
Confidence 4567899999987 8898877666420 00 11111 126688 44888776542211 11
Q ss_pred hhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 186 MVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 186 ~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
.+.+++|+...+++|+.+.|.- +.++|.|-||--+
T Consensus 126 --~eT~~KD~~~~i~~~fge~~~~----iilVGHSmGGaIa 160 (343)
T KOG2564|consen 126 --LETMSKDFGAVIKELFGELPPQ----IILVGHSMGGAIA 160 (343)
T ss_pred --HHHHHHHHHHHHHHHhccCCCc----eEEEeccccchhh
Confidence 2578999999999999775443 5789999999544
No 74
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=49.59 E-value=9.5 Score=33.96 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.8
Q ss_pred CCCCceEeeCCCCcch
Q 041087 107 STNPSLLWLDGGPGCS 122 (250)
Q Consensus 107 ~~~PlvlWlNGGPGcS 122 (250)
.+.|-|+|+-|||||-
T Consensus 5 ~~~~~IifVlGGPGsg 20 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSG 20 (195)
T ss_pred ccCCCEEEEEcCCCCC
Confidence 4678999999999984
No 75
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=49.35 E-value=52 Score=31.75 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 191 MIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 191 ~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+....++|+++-...|. --.+...|+|+|.||.-+-.++.
T Consensus 156 D~~~al~wv~~~i~~fg-gd~~~v~~~G~SaG~~~~~~~~~ 195 (493)
T cd00312 156 DQRLALKWVQDNIAAFG-GDPDSVTIFGESAGGASVSLLLL 195 (493)
T ss_pred HHHHHHHHHHHHHHHhC-CCcceEEEEeecHHHHHhhhHhh
Confidence 34456677777776653 22345889999999988765544
No 76
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=44.40 E-value=21 Score=27.61 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=27.8
Q ss_pred ceEeeCCCCcchhhhhhhhhhh---CCeEEcCCCCeeeecCCCCcCCCc--eeeeecCcccce
Q 041087 111 SLLWLDGGPGCSSLAYGAVTES---GSFRMNKDGKTLFRNNYAWNNGDK--TLRLGKRDILGI 168 (250)
Q Consensus 111 lvlWlNGGPGcSSl~~g~~~e~---GP~~v~~~~~~l~~N~~SW~~~an--lLfID~PvGtGf 168 (250)
|=|.+.|| |||++.|++-.+. +-..+..++.++.-.+.|-.-+.+ |=|+|...|.||
T Consensus 28 LRi~v~~g-GCsG~~Y~~~ld~~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy~~~~~g~gF 89 (92)
T TIGR01911 28 IRIHFAGM-GCMGPMFNLIADEEKEGDEIEKIHDLTFLIDKNLIDQFGGFSIECAEENFGAGF 89 (92)
T ss_pred EEEEEeCC-CccCcccceEecCCCCCCEEEEeCCEEEEECHHHHHHhCCCEEEEecCCCCCcE
Confidence 66667877 9999875443221 112222333344444433333322 445555555555
No 77
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=44.16 E-value=25 Score=34.11 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=37.3
Q ss_pred CCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccc-cccccccccccccCCce
Q 041087 154 GDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTK-ECSDSRDEAADEIGDID 225 (250)
Q Consensus 154 ~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~-y~~~~l~i~gESYgG~~ 225 (250)
.+|++...-| |+|+|.+.. + .. +++++. +.+.++|.++++ -..+.+.+-|-|.||--
T Consensus 171 ~aNvl~fNYp-GVg~S~G~~--s------~~-----dLv~~~-~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~V 228 (365)
T PF05677_consen 171 GANVLVFNYP-GVGSSTGPP--S------RK-----DLVKDY-QACVRYLRDEEQGPKAKNIILYGHSLGGGV 228 (365)
T ss_pred CCcEEEECCC-ccccCCCCC--C------HH-----HHHHHH-HHHHHHHHhcccCCChheEEEeeccccHHH
Confidence 4799999966 999998753 1 12 333333 566677766543 23456777899999854
No 78
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=42.00 E-value=69 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=21.3
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhh
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSL 124 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl 124 (250)
+.+++|.-+-.. ++..+|.|+.+.|-+|.+..
T Consensus 32 ~~~~~y~~~G~~-~~~~~p~vvl~HG~~~~~~~ 63 (379)
T PRK00175 32 PVELAYETYGTL-NADRSNAVLICHALTGDHHV 63 (379)
T ss_pred CceEEEEecccc-CCCCCCEEEEeCCcCCchhh
Confidence 466888765321 23347899999998886654
No 79
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=41.05 E-value=62 Score=31.44 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.5
Q ss_pred cccccccccCCceecccccc--------cccCCcc
Q 041087 213 SRDEAADEIGDIDIYNICAP--------ICISPTF 239 (250)
Q Consensus 213 ~l~i~gESYgG~~ip~ia~~--------~~~~~~~ 239 (250)
...|+|-|+||.-.-.++.. +|+|++|
T Consensus 289 ~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 289 RTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred ceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 36799999999876544432 2577665
No 80
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=39.59 E-value=89 Score=29.11 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=68.8
Q ss_pred EEEecCCCCceEEEEEEecCCCCCCCCceEeeCCCCcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecC
Q 041087 84 YVTVDPKSGRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKR 163 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~P 163 (250)
.|+++..+.-.|-=|...+++ ++|.+|+|.+--|- +|++.-+ .+. ... +=..||+-+|--
T Consensus 56 ~i~l~T~D~vtL~a~~~~~E~---S~pTlLyfh~NAGN----mGhr~~i------~~~--fy~-----~l~mnv~ivsYR 115 (300)
T KOG4391|consen 56 RIELRTRDKVTLDAYLMLSES---SRPTLLYFHANAGN----MGHRLPI------ARV--FYV-----NLKMNVLIVSYR 115 (300)
T ss_pred EEEEEcCcceeEeeeeecccC---CCceEEEEccCCCc----ccchhhH------HHH--HHH-----HcCceEEEEEee
Confidence 344544444556655555443 89999999875442 2333211 110 000 123688999954
Q ss_pred cccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccccc
Q 041087 164 DILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICAPI 233 (250)
Q Consensus 164 vGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~~~ 233 (250)
|-|-|.+.+... .+.. +++ ....++..+|..-+..+.+.|.|.||--+..||...
T Consensus 116 -GYG~S~GspsE~--GL~l--------Ds~----avldyl~t~~~~dktkivlfGrSlGGAvai~lask~ 170 (300)
T KOG4391|consen 116 -GYGKSEGSPSEE--GLKL--------DSE----AVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKN 170 (300)
T ss_pred -ccccCCCCcccc--ceec--------cHH----HHHHHHhcCccCCcceEEEEecccCCeeEEEeeccc
Confidence 666666543211 1111 233 334567788999999999999999999888887754
No 81
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=39.21 E-value=21 Score=30.74 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCCceEeeCCCCcchhhhhhhhhhhC----CeEEcCCCCeeeecCCC--CcCCCceeeeecCcccceee
Q 041087 108 TNPSLLWLDGGPGCSSLAYGAVTESG----SFRMNKDGKTLFRNNYA--WNNGDKTLRLGKRDILGIQR 170 (250)
Q Consensus 108 ~~PlvlWlNGGPGcSSl~~g~~~e~G----P~~v~~~~~~l~~N~~S--W~~~anlLfID~PvGtGfS~ 170 (250)
..+|=|-+.+| |||++.|.+-.+.- =..+..+|.++.-.+.+ +.+-+-|=|+|...|.||-.
T Consensus 77 ~~~LRl~V~~g-GCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f 144 (163)
T PLN03082 77 DKMLRLSVETG-GCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV 144 (163)
T ss_pred CceEEEEEecC-CCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEE
Confidence 45677888888 99998654432222 23444455555555444 34445678888888888865
No 82
>COG0218 Predicted GTPase [General function prediction only]
Probab=37.27 E-value=50 Score=29.55 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCCCceEeeCC--CCcchhhhhhhhhh-hCCeEE-cCCCCeeeecCCCCcCCCceeeeecCcccceeec
Q 041087 106 SSTNPSLLWLDG--GPGCSSLAYGAVTE-SGSFRM-NKDGKTLFRNNYAWNNGDKTLRLGKRDILGIQRG 171 (250)
Q Consensus 106 ~~~~PlvlWlNG--GPGcSSl~~g~~~e-~GP~~v-~~~~~~l~~N~~SW~~~anlLfID~PvGtGfS~~ 171 (250)
|.+...=+.|-| ==|=||+ +-.+.. -.=-|+ +..|.|...|-+.|++. +.|||-| |=||..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSl-IN~l~~~k~LArtSktPGrTq~iNff~~~~~--~~lVDlP-GYGyAkv 85 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSL-INALTNQKNLARTSKTPGRTQLINFFEVDDE--LRLVDLP-GYGYAKV 85 (200)
T ss_pred CCCCCcEEEEEccCcccHHHH-HHHHhCCcceeecCCCCCccceeEEEEecCc--EEEEeCC-CcccccC
Confidence 444444455555 3467888 555543 222233 24567889999988887 8899999 5555443
No 83
>PLN00021 chlorophyllase
Probab=37.15 E-value=89 Score=29.15 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHh----ccccccccccccccccCCceeccccc
Q 041087 192 IKIHIPFLIKWLER----NTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 192 a~~~~~fl~~fl~~----~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
+++.++++++-++. ..+...+.++++|.|.||.-+-.+|.
T Consensus 102 ~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~ 145 (313)
T PLN00021 102 AAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALAL 145 (313)
T ss_pred HHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHh
Confidence 44455555544332 11223356999999999997766554
No 84
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.63 E-value=60 Score=30.65 Aligned_cols=36 Identities=3% Similarity=-0.085 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 191 MIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 191 ~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
.++.+++.+......-|+-.+=.+|+.|||.|.+-.
T Consensus 88 a~~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~ 123 (289)
T PF10081_consen 88 AARALFEAVYARWSTLPEDRRPKLYLYGESLGAYGG 123 (289)
T ss_pred HHHHHHHHHHHHHHhCCcccCCeEEEeccCccccch
Confidence 456688888888888899887779999999987654
No 85
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=35.36 E-value=21 Score=27.41 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=8.8
Q ss_pred ceeeeecCcccc
Q 041087 156 KTLRLGKRDILG 167 (250)
Q Consensus 156 nlLfID~PvGtG 167 (250)
|.|.||.|.|||
T Consensus 2 D~LiiD~PPGTg 13 (81)
T PF10609_consen 2 DYLIIDLPPGTG 13 (81)
T ss_dssp CEEEEE--SCSS
T ss_pred CEEEEeCCCCCC
Confidence 578999999997
No 86
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=34.32 E-value=27 Score=31.72 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccCCceeccc
Q 041087 192 IKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNI 229 (250)
Q Consensus 192 a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~i 229 (250)
++++..+|+...++. ......++++|-|.||+-+-.+
T Consensus 93 ~~~la~~l~~L~~~~-g~~~~~i~lIGhSlGa~vAg~~ 129 (275)
T cd00707 93 GAELAKFLDFLVDNT-GLSLENVHLIGHSLGAHVAGFA 129 (275)
T ss_pred HHHHHHHHHHHHHhc-CCChHHEEEEEecHHHHHHHHH
Confidence 344445555444332 2334578999999998765433
No 87
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=33.41 E-value=1.4e+02 Score=29.63 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=60.8
Q ss_pred EEEecCCCCceEEEEEEecCC----CCCCCCceEeeCCCCcchhhhh-----hhhhhhCCeEEcCCCCeeeecCCCCcCC
Q 041087 84 YVTVDPKSGRSLFYYFAESPQ----NSSTNPSLLWLDGGPGCSSLAY-----GAVTESGSFRMNKDGKTLFRNNYAWNNG 154 (250)
Q Consensus 84 yv~v~~~~~~~lFY~f~ea~~----~~~~~PlvlWlNGGPGcSSl~~-----g~~~e~GP~~v~~~~~~l~~N~~SW~~~ 154 (250)
+|...+ .|.-..=|+..... +..++|+++.+-|=.|.|.-.| ...++.| |++ .+.|
T Consensus 97 ii~~~D-GG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G-~r~------VVfN------- 161 (409)
T KOG1838|consen 97 IIKTSD-GGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKG-YRV------VVFN------- 161 (409)
T ss_pred EEEeCC-CCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCC-cEE------EEEC-------
Confidence 344443 33444445543321 3578899999999877774321 2334455 332 2222
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCcee
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDI 226 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~i 226 (250)
+-|.|-|... .+.+++.+. .+|+-.+++--.+++|+- +++.+|.|+||.-+
T Consensus 162 --------~RG~~g~~Lt----Tpr~f~ag~------t~Dl~~~v~~i~~~~P~a---~l~avG~S~Gg~iL 212 (409)
T KOG1838|consen 162 --------HRGLGGSKLT----TPRLFTAGW------TEDLREVVNHIKKRYPQA---PLFAVGFSMGGNIL 212 (409)
T ss_pred --------CCCCCCCccC----CCceeecCC------HHHHHHHHHHHHHhCCCC---ceEEEEecchHHHH
Confidence 5577766543 334555432 344545555555667765 78999999998654
No 88
>PF03283 PAE: Pectinacetylesterase
Probab=31.74 E-value=1.5e+02 Score=28.50 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=21.7
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcchhh
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCSSL 124 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcSSl 124 (250)
|..-.|++-+. ....++-++|.|+||=.|-+.
T Consensus 34 GS~~~yy~~~g-~g~~s~~~li~leGGG~C~~~ 65 (361)
T PF03283_consen 34 GSPPGYYFRPG-SGSGSNKWLIFLEGGGWCWDA 65 (361)
T ss_pred CCCCcEEEccC-CCCCCceEEEEeccchhcCCh
Confidence 34444555444 234568899999999888775
No 89
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=31.41 E-value=36 Score=32.63 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=39.6
Q ss_pred CceeeeecCcccceeecccCCcccc--ccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQ--LRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~--~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
|-||+||.- ==|=|...+..+... +-+. ++..+|+..|++.+..++......+..++|=||+|.-..
T Consensus 60 a~~v~lEHR-yYG~S~P~~~~s~~nL~yLt~-----~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laa 128 (434)
T PF05577_consen 60 ALVVALEHR-YYGKSQPFGDLSTENLRYLTS-----EQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAA 128 (434)
T ss_dssp EEEEEE--T-TSTTB-TTGGGGGSTTTC-SH-----HHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHH
T ss_pred CcEEEeehh-hhcCCCCccccchhhHHhcCH-----HHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHH
Confidence 557777744 334444332111111 2122 467788999999988777666667899999999998663
No 90
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=30.27 E-value=28 Score=23.29 Aligned_cols=10 Identities=40% Similarity=1.308 Sum_probs=5.5
Q ss_pred ceEeeCCCCc
Q 041087 111 SLLWLDGGPG 120 (250)
Q Consensus 111 lvlWlNGGPG 120 (250)
-+|||+|-||
T Consensus 26 RTiWFqGdPG 35 (39)
T PF09292_consen 26 RTIWFQGDPG 35 (39)
T ss_dssp -EEEESS---
T ss_pred CEEEeeCCCC
Confidence 4799999887
No 91
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=29.37 E-value=13 Score=36.09 Aligned_cols=37 Identities=30% Similarity=0.672 Sum_probs=28.6
Q ss_pred CcchhhhhhhhhhhCCeEEcCCCCeeeecCCCCcCCCceeeeecCc
Q 041087 119 PGCSSLAYGAVTESGSFRMNKDGKTLFRNNYAWNNGDKTLRLGKRD 164 (250)
Q Consensus 119 PGcSSl~~g~~~e~GP~~v~~~~~~l~~N~~SW~~~anlLfID~Pv 164 (250)
+||||+ ||...=.=||.++.+|. --.| +|.+|-|+|.
T Consensus 35 tGCssI-~gg~~P~tp~~~~~~g~-----Gpaw---~nslFEdnAe 71 (365)
T cd03377 35 TGCSSI-YGGSAPTTPYTTNAKGR-----GPAW---ANSLFEDNAE 71 (365)
T ss_pred CCCcee-ecCCCCCCcceeccCCC-----CCcc---ccccccchhH
Confidence 799999 78777777888887763 2256 8999999873
No 92
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=28.99 E-value=35 Score=33.25 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred CCCCceEeeCC--CCcchhhhhhhhhhhCCeEEc--CCC---CeeeecCCCCcCCCceeeeecCcccce
Q 041087 107 STNPSLLWLDG--GPGCSSLAYGAVTESGSFRMN--KDG---KTLFRNNYAWNNGDKTLRLGKRDILGI 168 (250)
Q Consensus 107 ~~~PlvlWlNG--GPGcSSl~~g~~~e~GP~~v~--~~~---~~l~~N~~SW~~~anlLfID~PvGtGf 168 (250)
++.|+=|-+.| |-|=||+ +-++-.+|+=.-. ..| .+..+.+|.--+.-||.+.|-| |+|=
T Consensus 32 ~~~~l~IaV~G~sGsGKSSf-INalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlP-G~gt 98 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSF-INALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLP-GIGT 98 (376)
T ss_dssp HH--EEEEEEESTTSSHHHH-HHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE---GGG
T ss_pred hcCceEEEEECCCCCCHHHH-HHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCC-CCCC
Confidence 35677888888 5556899 7888777762110 001 3566778888899999999998 7763
No 93
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.04 E-value=38 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.065 Sum_probs=17.3
Q ss_pred ccccccccccccCCceeccccc
Q 041087 210 CSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 210 ~~~~l~i~gESYgG~~ip~ia~ 231 (250)
..+++.++|-|.||.-+..++.
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHH
T ss_pred CCCcEEEEEEccCcHHHHHHhh
Confidence 4567999999999987765554
No 94
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=26.98 E-value=44 Score=35.29 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=39.6
Q ss_pred CCCceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhc--------------cccccccccccc
Q 041087 153 NGDKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERN--------------TKECSDSRDEAA 218 (250)
Q Consensus 153 ~~anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~--------------P~y~~~~l~i~g 218 (250)
.-.++|++| ..|+|-|.+... .....+ ..+..+.++ |+..+ -..+...+-++|
T Consensus 278 rGYaVV~~D-~RGtg~SeG~~~-----~~~~~E---~~D~~~vIe----Wl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G 344 (767)
T PRK05371 278 RGFAVVYVS-GIGTRGSDGCPT-----TGDYQE---IESMKAVID----WLNGRATAYTDRTRGKEVKADWSNGKVAMTG 344 (767)
T ss_pred CCeEEEEEc-CCCCCCCCCcCc-----cCCHHH---HHHHHHHHH----HHhhCCccccccccccccccCCCCCeeEEEE
Confidence 346899999 559999987421 111111 122333444 55532 335677899999
Q ss_pred cccCCceeccccc
Q 041087 219 DEIGDIDIYNICA 231 (250)
Q Consensus 219 ESYgG~~ip~ia~ 231 (250)
.||+|.-...+|.
T Consensus 345 ~SY~G~~~~~aAa 357 (767)
T PRK05371 345 KSYLGTLPNAVAT 357 (767)
T ss_pred EcHHHHHHHHHHh
Confidence 9999977664443
No 95
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=26.85 E-value=71 Score=32.05 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 189 NSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 189 ~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
++...|+...| +++++.+.-...+...+|-||||+-.+
T Consensus 145 eQALADfA~ll-~~lK~~~~a~~~pvIafGGSYGGMLaA 182 (492)
T KOG2183|consen 145 EQALADFAELL-TFLKRDLSAEASPVIAFGGSYGGMLAA 182 (492)
T ss_pred HHHHHHHHHHH-HHHhhccccccCcEEEecCchhhHHHH
Confidence 45556665444 456665555666788899999998653
No 96
>PRK06762 hypothetical protein; Provisional
Probab=26.31 E-value=36 Score=27.72 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=11.4
Q ss_pred CceEeeCCCCcch
Q 041087 110 PSLLWLDGGPGCS 122 (250)
Q Consensus 110 PlvlWlNGGPGcS 122 (250)
|.++|+.|.|||-
T Consensus 2 ~~li~i~G~~GsG 14 (166)
T PRK06762 2 TTLIIIRGNSGSG 14 (166)
T ss_pred CeEEEEECCCCCC
Confidence 7899999988885
No 97
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=25.74 E-value=48 Score=29.47 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=39.7
Q ss_pred CceeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 155 DKTLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 155 anlLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
..+|.+| .-|+|-|.+.-... . ...++|.++ +.+|+.+. ..+....-++|-||+|+....+|.
T Consensus 58 Y~vV~~D-~RG~g~S~G~~~~~-----~------~~e~~D~~d-~I~W~~~Q-pws~G~VGm~G~SY~G~~q~~~A~ 120 (272)
T PF02129_consen 58 YAVVVQD-VRGTGGSEGEFDPM-----S------PNEAQDGYD-TIEWIAAQ-PWSNGKVGMYGISYGGFTQWAAAA 120 (272)
T ss_dssp -EEEEEE--TTSTTS-S-B-TT-----S------HHHHHHHHH-HHHHHHHC-TTEEEEEEEEEETHHHHHHHHHHT
T ss_pred CEEEEEC-CcccccCCCccccC-----C------hhHHHHHHH-HHHHHHhC-CCCCCeEEeeccCHHHHHHHHHHh
Confidence 4688899 56999998752110 1 123444433 34577777 677778999999999999765555
No 98
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=25.73 E-value=1.8e+02 Score=27.27 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=34.1
Q ss_pred eeeeecCcccceeecccCCccccccchhhhhchHHHHHHHHHHHHHHHhccccccccccccccccCCceeccccc
Q 041087 157 TLRLGKRDILGIQRGWGFGTQVQLRTISLMVKNSMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNICA 231 (250)
Q Consensus 157 lLfID~PvGtGfS~~~~~~~~~~~~~~~~~V~~~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia~ 231 (250)
++=||-| |-|+|...+.+ . .++ ++...+-++++..+ +...++.++|-||||+-...+|.
T Consensus 89 v~aiDl~-G~g~~s~~~~~--~-~y~---------~~~~v~~i~~~~~~---~~~~~~~lvghS~Gg~va~~~Aa 147 (326)
T KOG1454|consen 89 VLAIDLP-GHGYSSPLPRG--P-LYT---------LRELVELIRRFVKE---VFVEPVSLVGHSLGGIVALKAAA 147 (326)
T ss_pred EEEEecC-CCCcCCCCCCC--C-cee---------hhHHHHHHHHHHHh---hcCcceEEEEeCcHHHHHHHHHH
Confidence 6679977 66643322111 1 122 33344566666665 33445889999999987754444
No 99
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=24.67 E-value=58 Score=29.11 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=17.4
Q ss_pred CCCCCceEeeCC--CCcchhhhhhhhh
Q 041087 106 SSTNPSLLWLDG--GPGCSSLAYGAVT 130 (250)
Q Consensus 106 ~~~~PlvlWlNG--GPGcSSl~~g~~~ 130 (250)
...+|.+|||.| |-|=|.+. .++.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA-~ale 44 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIA-NALE 44 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHH-HHHH
Confidence 367899999999 77777764 4433
No 100
>COG4425 Predicted membrane protein [Function unknown]
Probab=23.92 E-value=80 Score=32.08 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccccCCceec
Q 041087 190 SMIKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIY 227 (250)
Q Consensus 190 ~~a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip 227 (250)
+.++.+.+.+-++.++-|+-.+-.+|+.|||.|-+...
T Consensus 375 ~aa~aLf~aVy~yw~qLP~~sRPKLylhG~SLGa~~s~ 412 (588)
T COG4425 375 DAARALFEAVYGYWTQLPKSSRPKLYLHGESLGAMGSE 412 (588)
T ss_pred hHHHHHHHHHHHHHHhCCcCCCCceEEeccccccccCc
Confidence 35677888888888889999988899999999976654
No 101
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.32 E-value=57 Score=24.19 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccccc
Q 041087 195 HIPFLIKWLERNTKEC 210 (250)
Q Consensus 195 ~~~fl~~fl~~~P~y~ 210 (250)
...|+++|+++||+|.
T Consensus 61 ~C~y~~~~~~~hpey~ 76 (78)
T PF14542_consen 61 TCSYVAKYFRRHPEYQ 76 (78)
T ss_dssp TSHHHHHHHHH-GGGT
T ss_pred ECHHHHHHHHhCcccc
Confidence 4567799999999986
No 102
>PRK10162 acetyl esterase; Provisional
Probab=22.86 E-value=62 Score=29.75 Aligned_cols=38 Identities=13% Similarity=-0.014 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccCCceecccc
Q 041087 192 IKIHIPFLIKWLERNTKECSDSRDEAADEIGDIDIYNIC 230 (250)
Q Consensus 192 a~~~~~fl~~fl~~~P~y~~~~l~i~gESYgG~~ip~ia 230 (250)
+.+.++++.+..++.. .-...+.++|+|.||.-...++
T Consensus 135 ~~~a~~~l~~~~~~~~-~d~~~i~l~G~SaGG~la~~~a 172 (318)
T PRK10162 135 IVAVCCYFHQHAEDYG-INMSRIGFAGDSAGAMLALASA 172 (318)
T ss_pred HHHHHHHHHHhHHHhC-CChhHEEEEEECHHHHHHHHHH
Confidence 3334455544433321 1234689999999998766554
No 103
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=22.50 E-value=1.4e+02 Score=26.09 Aligned_cols=63 Identities=8% Similarity=0.000 Sum_probs=36.4
Q ss_pred ceEeeCCCCcchhhhhhhh----hhhC--CeEEcCCCCeeeecC--CCCcCCCceeeeecCcccceeecccC
Q 041087 111 SLLWLDGGPGCSSLAYGAV----TESG--SFRMNKDGKTLFRNN--YAWNNGDKTLRLGKRDILGIQRGWGF 174 (250)
Q Consensus 111 lvlWlNGGPGcSSl~~g~~----~e~G--P~~v~~~~~~l~~N~--~SW~~~anlLfID~PvGtGfS~~~~~ 174 (250)
|=|-+.+ .|||++.|++- .|.- =..+..++.++.-.+ ..+.+-+-|=|+|...|.||....+.
T Consensus 24 LRv~V~~-gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyve~~~g~gF~f~NPn 94 (190)
T TIGR03341 24 IRVFVVN-PGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPN 94 (190)
T ss_pred EEEEEEC-CccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEeecCCCceeEEeCCc
Confidence 3344444 48887654441 1221 133334444444443 44666677999999999999876543
No 104
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=21.05 E-value=3.6e+02 Score=24.74 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=18.7
Q ss_pred CceEEEEEEecCCCCCCCCceEeeCCCCcch
Q 041087 92 GRSLFYYFAESPQNSSTNPSLLWLDGGPGCS 122 (250)
Q Consensus 92 ~~~lFY~f~ea~~~~~~~PlvlWlNGGPGcS 122 (250)
+.+++|.-+...+ ...+|.|+.+.|=.|.+
T Consensus 15 ~~~~~y~~~g~~~-~~~~~~vll~Hg~~~~~ 44 (351)
T TIGR01392 15 DVRVAYETYGTLN-AERSNAVLVCHALTGDA 44 (351)
T ss_pred CceEEEEeccccC-CCCCCEEEEcCCcCcch
Confidence 5678887764421 13457888888765543
No 105
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.68 E-value=57 Score=22.39 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.7
Q ss_pred HHHHHHHHhccccccc
Q 041087 197 PFLIKWLERNTKECSD 212 (250)
Q Consensus 197 ~fl~~fl~~~P~y~~~ 212 (250)
.-|.+||++||.|...
T Consensus 28 ~~L~~WL~~~P~y~V~ 43 (46)
T PF07533_consen 28 KELEEWLEEHPGYEVA 43 (46)
T ss_dssp CCHHHHHHH-TTEEES
T ss_pred HHHHHHHHHCcCceeC
Confidence 3478999999999653
No 106
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=20.60 E-value=1.3e+02 Score=26.42 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=32.7
Q ss_pred Ccchhhhhhhhh----hh--CCeEEcCCCCeeeecCCC--CcCCCceeeeecCcccceeeccc
Q 041087 119 PGCSSLAYGAVT----ES--GSFRMNKDGKTLFRNNYA--WNNGDKTLRLGKRDILGIQRGWG 173 (250)
Q Consensus 119 PGcSSl~~g~~~----e~--GP~~v~~~~~~l~~N~~S--W~~~anlLfID~PvGtGfS~~~~ 173 (250)
.|||++.|++-. +. +=..+..++.++.-.+.| +.+-+-|=|+|...|.||....+
T Consensus 32 gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDyve~~~g~gF~f~NP 94 (192)
T PRK11190 32 PGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAP 94 (192)
T ss_pred CCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEEeecCCCCceEEECC
Confidence 478866444322 11 113333444455555444 55667789999999999988654
Done!