BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041088
TSMFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIAR
QMKRLELSSIWALLAAFEDPLPLGSASTFEGAFVKGVDSVSWMANNSAKLLNSQSDAPH

High Scoring Gene Products

Symbol, full name Information P value
AT3G04650 protein from Arabidopsis thaliana 1.4e-41
PFL_5143
FAD dependent oxidoreductase
protein from Pseudomonas protegens Pf-5 0.00011
PSPPH_1014
Uncharacterized protein
protein from Pseudomonas syringae pv. phaseolicola 1448A 0.00062

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041088
        (119 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084903 - symbol:AT3G04650 species:3702 "Arabi...   441  1.4e-41   1
UNIPROTKB|Q4K6B1 - symbol:PFL_5143 "FAD dependent oxidore...   100  0.00011   1
UNIPROTKB|Q48MT7 - symbol:PSPPH_1014 "Uncharacterized pro...    93  0.00062   1


>TAIR|locus:2084903 [details] [associations]
            symbol:AT3G04650 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AC011437 eggNOG:COG3380 EMBL:AY050342 EMBL:BT004515
            IPI:IPI00525811 RefSeq:NP_566235.1 UniGene:At.26589
            ProteinModelPortal:Q9SR09 SMR:Q9SR09 PaxDb:Q9SR09 PRIDE:Q9SR09
            EnsemblPlants:AT3G04650.1 GeneID:819623 KEGG:ath:AT3G04650
            TAIR:At3g04650 HOGENOM:HOG000244162 InParanoid:Q9SR09 OMA:QARIASW
            PhylomeDB:Q9SR09 ProtClustDB:CLSN2688068 Genevestigator:Q9SR09
            Uniprot:Q9SR09
        Length = 486

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 84/119 (70%), Positives = 98/119 (82%)

Query:     1 TSMFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIAR 60
             + M ++VRPCWIS LEP NGMWHLSEN   RGQFDV+VIAH GKCANRLL +SGLP +A+
Sbjct:   215 SQMVNLVRPCWISKLEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASGLPLVAK 274

Query:    61 QMKRLELSSIWALLAAFEDPLPLGSASTFEGAFVKGVDSVSWMANNSAKLLNSQSDAPH 119
             QMK+L+LSSIWALLAAF+DPLP      FEGAFVKGV+S+SWM NNSAKL N ++  PH
Sbjct:   275 QMKKLDLSSIWALLAAFDDPLP---TVNFEGAFVKGVESLSWMGNNSAKLGNGRTP-PH 329


>UNIPROTKB|Q4K6B1 [details] [associations]
            symbol:PFL_5143 "FAD dependent oxidoreductase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR002937 Pfam:PF01593 GO:GO:0016491 EMBL:CP000076
            GenomeReviews:CP000076_GR eggNOG:COG3380 KO:K06955 OMA:QARIASW
            HOGENOM:HOG000225370 ProtClustDB:CLSK868815 RefSeq:YP_262222.1
            ProteinModelPortal:Q4K6B1 SMR:Q4K6B1 STRING:Q4K6B1 GeneID:3479547
            KEGG:pfl:PFL_5143 PATRIC:19879749
            BioCyc:PFLU220664:GIX8-5184-MONOMER Uniprot:Q4K6B1
        Length = 328

 Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 33/98 (33%), Positives = 48/98 (48%)

Query:    16 EPFNGM--WHLSENVKL-RGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72
             E F G   WHL +      G F  VVIA     A  LL ++  P++A     +++   WA
Sbjct:   130 EVFRGEQHWHLQDAEGFTHGPFSHVVIATPAPQATALLAAA--PKLAGVAAGVKMDPTWA 187

Query:    73 LLAAFEDPLPLGSASTFEGAFVKGVDS-VSWMANNSAK 109
             +  AF+ PL     +  EG FV+  DS + W+A N +K
Sbjct:   188 VALAFDTPLE----TPMEGCFVQ--DSPLDWLARNRSK 219


>UNIPROTKB|Q48MT7 [details] [associations]
            symbol:PSPPH_1014 "Uncharacterized protein" species:264730
            "Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR002937 Pfam:PF01593 GO:GO:0016491 EMBL:CP000058
            GenomeReviews:CP000058_GR eggNOG:COG3380 KO:K06955 OMA:QARIASW
            RefSeq:YP_273285.1 ProteinModelPortal:Q48MT7 SMR:Q48MT7
            STRING:Q48MT7 GeneID:3560140 KEGG:psp:PSPPH_1014 PATRIC:19971120
            HOGENOM:HOG000225370 ProtClustDB:CLSK868815 Uniprot:Q48MT7
        Length = 328

 Score = 93 (37.8 bits), Expect = 0.00062, P = 0.00062
 Identities = 30/102 (29%), Positives = 52/102 (50%)

Query:    10 CWISNLEPFNGMWHLSE-NVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELS 68
             C I+++      W+L +   +  G F  V+IA     A  LL ++  P++A  +  +++ 
Sbjct:   126 CRITDVFRGEQHWNLLDAEGENHGPFSHVIIATPAPQATALLAAA--PKLASVVAGVKMD 183

Query:    69 SIWALLAAFEDPLPLGSASTFEGAFVKGVDS-VSWMANNSAK 109
               WA+  AFE PL     +  +G FV+  DS + W+A N +K
Sbjct:   184 PTWAVALAFETPLQ----TPMQGCFVQ--DSPLDWLARNRSK 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.48    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  130 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.61u 0.20s 11.81t   Elapsed:  00:00:00
  Total cpu time:  11.61u 0.20s 11.81t   Elapsed:  00:00:00
  Start:  Thu May  9 21:09:08 2013   End:  Thu May  9 21:09:08 2013

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