BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041088
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 16 EPFNGMWH---LSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72
E F G H L + G F V+IA A+ LL ++ P++A + ++ WA
Sbjct: 130 EVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAA--PKLASVVAGVKXDPTWA 187
Query: 73 LLAAFEDPLPLGSASTFEGAFVKGVDSVSWMANNSAK 109
+ AFE PL + +G FV+ + W+A N +K
Sbjct: 188 VALAFETPL----QTPXQGCFVQD-SPLDWLARNRSK 219
>pdb|3E49|A Chain A, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) With A Tim Barrel Fold (Bxe_c0966)
From Burkholderia Xenovorans Lb400 At 1.75 A Resolution
pdb|3E49|B Chain B, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) With A Tim Barrel Fold (Bxe_c0966)
From Burkholderia Xenovorans Lb400 At 1.75 A Resolution
pdb|3E49|C Chain C, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) With A Tim Barrel Fold (Bxe_c0966)
From Burkholderia Xenovorans Lb400 At 1.75 A Resolution
pdb|3E49|D Chain D, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) With A Tim Barrel Fold (Bxe_c0966)
From Burkholderia Xenovorans Lb400 At 1.75 A Resolution
Length = 311
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 39 IAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLPLGSASTFEGAFVK-GV 97
+AH + A+RL G+ +W++L A +PL S +GA V+ G+
Sbjct: 214 LAHXRRTADRLFGAD---------------YVWSILGAGRHQIPLASIGAAQGANVRVGL 258
Query: 98 DSVSWMA 104
+ W+A
Sbjct: 259 EDSLWIA 265
>pdb|3O1H|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort
Complex In The Presence Of Tmao
pdb|3O1I|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort
Complex In The Absence Of Ligand
pdb|3O1I|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort
Complex In The Absence Of Ligand
pdb|3O1J|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort
Complex In The Absence Of Isopropanol
pdb|3O1J|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort
Complex In The Absence Of Isopropanol
Length = 304
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 23 HLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIW---ALLAAFED 79
HL ++ L + +V A K R+L + G P +RQ ++L L + W A++ D
Sbjct: 14 HLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73
Query: 80 P 80
P
Sbjct: 74 P 74
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 73 LLAAFEDPLPLGSASTFEGAFVKGVDSV 100
LL+ FED LP A + G V +DS+
Sbjct: 164 LLSKFEDKLPEDMARFYIGEMVLAIDSI 191
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 73 LLAAFEDPLPLGSASTFEGAFVKGVDSV 100
LL+ FED LP A + G V +DS+
Sbjct: 180 LLSKFEDKLPEDMARFYIGEMVLAIDSI 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,343,100
Number of Sequences: 62578
Number of extensions: 116300
Number of successful extensions: 244
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)