Query 041088
Match_columns 119
No_of_seqs 135 out of 1001
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.9 1.3E-22 2.9E-27 150.4 2.6 108 3-116 117-229 (331)
2 TIGR00562 proto_IX_ox protopor 99.5 1.6E-12 3.4E-17 102.3 12.4 109 4-115 238-350 (462)
3 TIGR03467 HpnE squalene-associ 99.4 1.8E-11 3.9E-16 94.3 12.6 101 4-112 212-313 (419)
4 PLN02576 protoporphyrinogen ox 99.3 6.9E-11 1.5E-15 94.0 12.3 111 4-115 252-374 (496)
5 PRK11883 protoporphyrinogen ox 99.1 1.9E-09 4.1E-14 84.2 13.6 100 5-110 235-337 (451)
6 PF01593 Amino_oxidase: Flavin 99.0 2.8E-09 6E-14 81.0 10.6 107 4-112 224-333 (450)
7 PRK12416 protoporphyrinogen ox 99.0 2.8E-09 6E-14 84.3 9.4 75 4-81 239-313 (463)
8 TIGR02732 zeta_caro_desat caro 98.8 1.8E-08 3.8E-13 80.6 8.4 81 4-84 234-324 (474)
9 COG1232 HemY Protoporphyrinoge 98.8 6.1E-08 1.3E-12 77.1 11.1 101 4-110 227-330 (444)
10 PRK07233 hypothetical protein; 98.8 8.1E-08 1.7E-12 74.6 11.5 78 4-82 213-290 (434)
11 PLN02612 phytoene desaturase 98.8 7.3E-08 1.6E-12 78.7 10.6 81 4-84 323-406 (567)
12 PLN02268 probable polyamine ox 98.7 2.2E-07 4.7E-12 72.9 11.9 78 4-82 211-292 (435)
13 PLN02328 lysine-specific histo 98.7 3E-07 6.5E-12 77.7 10.9 77 4-82 447-527 (808)
14 PLN02529 lysine-specific histo 98.6 6.5E-07 1.4E-11 75.1 11.7 77 4-82 367-447 (738)
15 COG2907 Predicted NAD/FAD-bind 98.6 2.5E-07 5.5E-12 71.6 7.6 74 5-79 233-306 (447)
16 PRK07208 hypothetical protein; 98.5 2E-06 4.3E-11 68.2 10.7 81 4-84 233-319 (479)
17 TIGR02731 phytoene_desat phyto 98.5 1.2E-06 2.6E-11 69.1 9.2 81 4-84 228-316 (453)
18 PLN02487 zeta-carotene desatur 98.5 1.1E-06 2.4E-11 72.0 9.1 81 4-84 310-400 (569)
19 PLN02568 polyamine oxidase 98.3 4.3E-06 9.3E-11 68.1 9.6 77 5-82 256-340 (539)
20 PLN03000 amine oxidase 98.3 4.4E-06 9.6E-11 71.2 8.8 77 4-82 391-471 (881)
21 PLN02676 polyamine oxidase 98.1 1.4E-05 3.1E-10 64.2 8.5 79 4-83 245-327 (487)
22 TIGR02733 desat_CrtD C-3',4' d 98.1 3.2E-05 6.9E-10 61.8 9.3 78 3-80 246-331 (492)
23 COG1231 Monoamine oxidase [Ami 98.1 4.1E-05 9E-10 60.9 9.4 100 5-108 222-324 (450)
24 PLN02976 amine oxidase 97.7 0.00015 3.3E-09 64.9 8.5 78 4-82 946-1037(1713)
25 KOG1276 Protoporphyrinogen oxi 97.6 0.00037 8.1E-09 55.4 7.7 108 4-116 264-383 (491)
26 KOG0685 Flavin-containing amin 97.5 0.00058 1.3E-08 54.8 7.7 80 5-84 245-329 (498)
27 TIGR02730 carot_isom carotene 97.3 0.0021 4.6E-08 51.5 9.2 78 4-81 244-325 (493)
28 TIGR02734 crtI_fam phytoene de 97.3 0.0012 2.6E-08 52.8 7.7 76 4-79 234-313 (502)
29 PF13738 Pyr_redox_3: Pyridine 96.9 0.00099 2.2E-08 46.6 3.6 40 4-43 97-136 (203)
30 KOG0029 Amine oxidase [Seconda 96.2 0.028 6E-07 45.8 7.9 80 3-83 228-312 (501)
31 PF01266 DAO: FAD dependent ox 96.2 0.021 4.6E-07 42.6 6.5 67 3-79 161-228 (358)
32 PF13454 NAD_binding_9: FAD-NA 96.0 0.013 2.8E-07 40.1 4.5 35 8-42 120-154 (156)
33 PF07156 Prenylcys_lyase: Pren 95.2 0.036 7.7E-07 43.5 4.5 45 2-47 138-189 (368)
34 COG2081 Predicted flavoprotein 95.2 0.038 8.3E-07 43.8 4.7 40 3-42 125-164 (408)
35 PF03486 HI0933_like: HI0933-l 95.2 0.037 8.1E-07 43.9 4.7 46 3-48 123-169 (409)
36 TIGR03197 MnmC_Cterm tRNA U-34 95.0 0.052 1.1E-06 41.9 5.1 42 4-45 149-190 (381)
37 PLN02172 flavin-containing mon 94.5 0.067 1.5E-06 43.0 4.7 38 6-43 130-171 (461)
38 TIGR01984 UbiH 2-polyprenyl-6- 94.3 0.78 1.7E-05 35.1 10.0 49 3-51 120-169 (382)
39 PRK09897 hypothetical protein; 94.2 0.11 2.4E-06 42.6 5.4 41 3-43 123-164 (534)
40 PF00743 FMO-like: Flavin-bind 93.8 0.1 2.2E-06 42.8 4.4 38 5-42 102-147 (531)
41 PRK07588 hypothetical protein; 93.3 0.21 4.5E-06 38.6 5.2 42 3-44 116-157 (391)
42 PRK01747 mnmC bifunctional tRN 93.2 0.19 4.1E-06 42.0 5.1 42 4-45 422-463 (662)
43 TIGR03219 salicylate_mono sali 92.8 0.27 5.9E-06 38.4 5.4 43 4-46 118-160 (414)
44 PRK11259 solA N-methyltryptoph 92.8 0.2 4.4E-06 38.2 4.6 42 3-45 163-204 (376)
45 PRK06847 hypothetical protein; 92.8 0.28 6E-06 37.5 5.2 43 3-45 121-163 (375)
46 TIGR01292 TRX_reduct thioredox 92.6 0.25 5.5E-06 36.2 4.7 40 3-43 71-110 (300)
47 PRK11728 hydroxyglutarate oxid 92.2 0.42 9.2E-06 37.1 5.6 41 3-44 163-203 (393)
48 PF13434 K_oxygenase: L-lysine 92.2 0.2 4.3E-06 38.8 3.7 38 4-41 294-337 (341)
49 PTZ00383 malate:quinone oxidor 91.9 0.49 1.1E-05 38.6 5.8 41 4-45 232-273 (497)
50 PRK07236 hypothetical protein; 91.7 0.43 9.3E-06 36.9 5.1 38 4-41 113-150 (386)
51 PRK05732 2-octaprenyl-6-methox 91.5 0.46 9.9E-06 36.5 5.1 42 3-44 127-168 (395)
52 TIGR03862 flavo_PP4765 unchara 91.5 0.38 8.2E-06 37.9 4.7 45 3-49 100-145 (376)
53 TIGR01377 soxA_mon sarcosine o 91.4 0.46 9.9E-06 36.3 5.0 41 3-44 159-199 (380)
54 TIGR01988 Ubi-OHases Ubiquinon 91.2 0.48 1E-05 36.1 4.9 40 4-43 122-161 (385)
55 PRK05714 2-octaprenyl-3-methyl 90.8 0.57 1.2E-05 36.3 5.1 49 3-51 126-175 (405)
56 PRK04965 NADH:flavorubredoxin 90.8 0.55 1.2E-05 36.3 5.0 40 3-42 197-236 (377)
57 TIGR02352 thiamin_ThiO glycine 90.7 0.76 1.6E-05 34.3 5.5 43 3-46 151-194 (337)
58 PRK06753 hypothetical protein; 90.7 0.61 1.3E-05 35.6 5.1 40 4-43 111-150 (373)
59 PRK08773 2-octaprenyl-3-methyl 90.6 0.63 1.4E-05 35.9 5.2 41 3-43 127-167 (392)
60 PRK09126 hypothetical protein; 90.6 0.63 1.4E-05 35.8 5.1 42 3-44 125-166 (392)
61 PRK07333 2-octaprenyl-6-methox 90.6 0.66 1.4E-05 35.8 5.2 48 3-50 125-173 (403)
62 PRK08020 ubiF 2-octaprenyl-3-m 90.5 0.65 1.4E-05 35.8 5.1 48 3-50 127-175 (391)
63 PRK15317 alkyl hydroperoxide r 89.8 0.79 1.7E-05 37.2 5.3 41 3-43 280-320 (517)
64 PRK08849 2-octaprenyl-3-methyl 89.7 0.77 1.7E-05 35.5 4.9 43 3-45 125-167 (384)
65 COG0579 Predicted dehydrogenas 89.7 1 2.3E-05 36.1 5.7 50 3-52 167-220 (429)
66 PRK00711 D-amino acid dehydrog 89.5 0.83 1.8E-05 35.4 5.0 42 3-45 215-257 (416)
67 PRK08163 salicylate hydroxylas 89.5 0.85 1.8E-05 35.1 5.0 42 3-44 124-165 (396)
68 TIGR03140 AhpF alkyl hydropero 89.5 0.84 1.8E-05 37.0 5.2 41 3-43 281-321 (515)
69 PRK13339 malate:quinone oxidor 89.5 0.8 1.7E-05 37.4 5.0 43 3-45 199-247 (497)
70 PRK05868 hypothetical protein; 89.2 0.94 2E-05 35.1 5.1 40 3-42 118-157 (372)
71 PRK06116 glutathione reductase 89.1 0.9 1.9E-05 36.0 5.0 39 3-41 222-261 (450)
72 PRK12409 D-amino acid dehydrog 89.0 0.96 2.1E-05 35.2 5.0 42 4-45 212-258 (410)
73 PRK12266 glpD glycerol-3-phosp 88.5 9.6 0.00021 31.0 10.6 42 4-45 170-216 (508)
74 TIGR00275 flavoprotein, HI0933 88.4 1.1 2.4E-05 35.1 5.1 44 3-47 119-162 (400)
75 PRK07846 mycothione reductase; 87.9 1.4 3E-05 35.2 5.4 40 3-42 220-259 (451)
76 TIGR03329 Phn_aa_oxid putative 87.6 1.1 2.5E-05 35.6 4.7 39 4-44 198-236 (460)
77 PRK05249 soluble pyridine nucl 87.4 1.3 2.9E-05 35.0 5.0 40 3-42 230-269 (461)
78 TIGR03452 mycothione_red mycot 87.2 1.5 3.2E-05 35.0 5.2 40 3-42 223-262 (452)
79 PRK08850 2-octaprenyl-6-methox 87.0 1.5 3.3E-05 34.1 5.0 48 3-50 126-174 (405)
80 TIGR01350 lipoamide_DH dihydro 87.0 1.4 3.1E-05 34.8 4.9 40 3-42 225-266 (461)
81 TIGR01424 gluta_reduc_2 glutat 87.0 1.6 3.4E-05 34.7 5.2 40 3-42 221-260 (446)
82 PRK06416 dihydrolipoamide dehy 86.8 1.2 2.7E-05 35.3 4.5 40 3-42 227-269 (462)
83 PRK07845 flavoprotein disulfid 86.6 1.6 3.5E-05 34.9 5.1 40 3-42 232-271 (466)
84 PRK06834 hypothetical protein; 86.2 1.7 3.7E-05 35.1 5.1 42 3-44 114-155 (488)
85 COG2509 Uncharacterized FAD-de 86.2 1.6 3.4E-05 35.5 4.7 39 4-42 188-227 (486)
86 TIGR03385 CoA_CoA_reduc CoA-di 86.1 1.9 4E-05 33.9 5.2 41 3-43 58-101 (427)
87 PLN02507 glutathione reductase 86.0 1.8 4E-05 35.0 5.2 40 3-42 258-297 (499)
88 PRK07494 2-octaprenyl-6-methox 85.9 1.7 3.6E-05 33.5 4.7 38 7-44 129-166 (388)
89 PF06039 Mqo: Malate:quinone o 85.4 2.4 5.3E-05 34.5 5.5 51 3-54 196-252 (488)
90 PF00070 Pyr_redox: Pyridine n 85.1 1.7 3.6E-05 26.0 3.5 27 3-29 54-80 (80)
91 COG2072 TrkA Predicted flavopr 85.0 1.8 3.9E-05 34.7 4.7 40 4-43 99-142 (443)
92 PRK07608 ubiquinone biosynthes 85.0 2 4.4E-05 32.9 4.8 40 4-44 127-166 (388)
93 PRK11445 putative oxidoreducta 84.9 2.4 5.3E-05 32.4 5.2 42 3-44 112-156 (351)
94 PRK08013 oxidoreductase; Provi 84.9 2 4.4E-05 33.4 4.8 43 3-45 126-168 (400)
95 PRK05257 malate:quinone oxidor 84.7 2 4.3E-05 35.0 4.8 42 4-45 199-246 (494)
96 PRK09754 phenylpropionate diox 84.5 2.3 5E-05 33.1 5.0 40 3-43 200-239 (396)
97 COG0654 UbiH 2-polyprenyl-6-me 84.2 2.5 5.5E-05 32.8 5.0 49 3-51 119-169 (387)
98 PF00732 GMC_oxred_N: GMC oxid 84.1 2.8 6.1E-05 30.9 5.1 53 2-54 206-267 (296)
99 PRK07190 hypothetical protein; 83.8 2.5 5.5E-05 34.2 5.0 43 3-45 123-165 (487)
100 PRK06617 2-octaprenyl-6-methox 83.7 2.8 6E-05 32.3 5.1 41 3-44 119-159 (374)
101 PRK09564 coenzyme A disulfide 83.6 2.7 5.8E-05 33.1 5.0 41 3-43 70-113 (444)
102 PRK13369 glycerol-3-phosphate 83.6 22 0.00048 28.8 10.7 42 4-45 170-215 (502)
103 TIGR02032 GG-red-SF geranylger 83.0 3.1 6.6E-05 30.2 4.9 43 3-45 105-148 (295)
104 KOG1399 Flavin-containing mono 82.8 1.8 3.8E-05 35.0 3.7 40 5-44 108-152 (448)
105 TIGR02462 pyranose_ox pyranose 82.7 4.2 9.1E-05 33.7 5.9 51 2-52 227-286 (544)
106 PRK07364 2-octaprenyl-6-methox 82.5 3 6.5E-05 32.3 4.9 41 3-43 136-179 (415)
107 PTZ00363 rab-GDP dissociation 82.5 3.1 6.8E-05 33.4 5.1 38 4-41 247-286 (443)
108 PRK08010 pyridine nucleotide-d 82.0 3.2 7E-05 32.7 4.9 38 3-41 213-250 (441)
109 TIGR02374 nitri_red_nirB nitri 81.9 2.4 5.1E-05 36.4 4.4 39 3-43 68-106 (785)
110 PRK09754 phenylpropionate diox 81.6 3.3 7.2E-05 32.2 4.8 39 3-43 72-110 (396)
111 COG1233 Phytoene dehydrogenase 81.2 3.5 7.6E-05 33.3 4.9 47 4-50 239-286 (487)
112 PRK14727 putative mercuric red 80.9 4.1 9E-05 32.7 5.2 41 3-44 242-282 (479)
113 PRK14694 putative mercuric red 80.7 3.9 8.5E-05 32.6 5.0 39 3-42 232-270 (468)
114 PRK07045 putative monooxygenas 80.7 3.9 8.4E-05 31.5 4.9 43 3-45 121-165 (388)
115 PRK13512 coenzyme A disulfide 80.6 3.9 8.5E-05 32.4 5.0 41 3-43 72-115 (438)
116 PRK06475 salicylate hydroxylas 80.6 3.9 8.5E-05 31.8 4.9 43 3-45 122-167 (400)
117 PRK06184 hypothetical protein; 80.4 3.7 8E-05 33.0 4.8 48 3-50 123-174 (502)
118 PF13434 K_oxygenase: L-lysine 80.4 1.9 4.1E-05 33.3 3.1 37 6-42 112-156 (341)
119 TIGR03378 glycerol3P_GlpB glyc 80.3 3.4 7.4E-05 33.1 4.5 49 4-52 278-329 (419)
120 PRK10157 putative oxidoreducta 80.2 4.3 9.3E-05 32.1 5.1 41 3-43 122-162 (428)
121 TIGR01320 mal_quin_oxido malat 80.1 3.7 8.1E-05 33.2 4.8 42 3-44 192-239 (483)
122 TIGR01810 betA choline dehydro 79.2 5.4 0.00012 32.4 5.4 51 2-52 207-262 (532)
123 PRK07251 pyridine nucleotide-d 78.8 5 0.00011 31.6 5.0 38 3-41 212-249 (438)
124 PRK06912 acoL dihydrolipoamide 78.5 5.1 0.00011 31.9 5.0 40 3-42 225-265 (458)
125 COG3486 IucD Lysine/ornithine 77.7 3.7 8E-05 33.0 3.9 42 3-44 292-339 (436)
126 PRK06327 dihydrolipoamide dehy 77.6 4.9 0.00011 32.2 4.7 40 3-42 238-281 (475)
127 PRK04965 NADH:flavorubredoxin 77.5 5.2 0.00011 30.8 4.7 38 3-43 72-109 (377)
128 PRK07818 dihydrolipoamide dehy 77.4 5.1 0.00011 31.9 4.8 40 3-42 227-270 (466)
129 TIGR03169 Nterm_to_SelD pyridi 77.2 4.7 0.0001 30.8 4.4 36 4-42 69-104 (364)
130 PLN02927 antheraxanthin epoxid 77.0 5.5 0.00012 33.8 5.0 41 5-45 208-248 (668)
131 PRK10015 oxidoreductase; Provi 77.0 6.2 0.00013 31.3 5.1 41 3-43 122-162 (429)
132 PRK13748 putative mercuric red 77.0 5.8 0.00013 32.3 5.0 39 3-42 324-362 (561)
133 PRK06370 mercuric reductase; V 76.9 6 0.00013 31.5 5.0 40 3-42 226-268 (463)
134 PF05834 Lycopene_cycl: Lycope 76.0 6.2 0.00013 30.6 4.8 43 4-46 101-143 (374)
135 TIGR02053 MerA mercuric reduct 75.7 5.9 0.00013 31.5 4.7 40 3-42 221-263 (463)
136 TIGR01421 gluta_reduc_1 glutat 75.6 6.6 0.00014 31.3 4.9 40 3-42 221-262 (450)
137 PRK06183 mhpA 3-(3-hydroxyphen 75.5 5.6 0.00012 32.4 4.6 48 3-50 128-180 (538)
138 PTZ00052 thioredoxin reductase 74.6 7.3 0.00016 31.6 5.0 40 3-42 236-275 (499)
139 PLN02463 lycopene beta cyclase 74.6 7.4 0.00016 31.3 5.0 39 4-43 129-167 (447)
140 PRK06996 hypothetical protein; 74.5 6.6 0.00014 30.5 4.6 47 4-50 130-181 (398)
141 PRK09564 coenzyme A disulfide 74.5 5.6 0.00012 31.3 4.2 40 3-43 205-244 (444)
142 TIGR01989 COQ6 Ubiquinone bios 73.7 7.6 0.00016 30.7 4.8 44 3-46 134-184 (437)
143 TIGR01813 flavo_cyto_c flavocy 73.4 7.5 0.00016 30.6 4.7 43 3-45 144-192 (439)
144 PRK02106 choline dehydrogenase 73.3 6.1 0.00013 32.4 4.3 50 2-51 214-268 (560)
145 COG0061 nadF NAD kinase [Coenz 72.5 5.4 0.00012 30.1 3.5 59 24-84 154-214 (281)
146 PRK06175 L-aspartate oxidase; 72.1 9 0.0002 30.5 4.9 43 3-45 143-189 (433)
147 PRK06115 dihydrolipoamide dehy 71.5 9.6 0.00021 30.5 5.0 40 3-42 229-273 (466)
148 PRK14989 nitrite reductase sub 71.3 7.9 0.00017 33.7 4.7 39 3-43 73-111 (847)
149 TIGR02374 nitri_red_nirB nitri 71.2 8.8 0.00019 33.0 4.9 40 3-42 196-235 (785)
150 TIGR03364 HpnW_proposed FAD de 71.2 7.9 0.00017 29.4 4.3 43 3-51 160-202 (365)
151 COG1249 Lpd Pyruvate/2-oxoglut 71.0 9.1 0.0002 31.0 4.7 38 4-41 229-268 (454)
152 PRK10262 thioredoxin reductase 70.6 10 0.00022 28.4 4.8 36 6-43 80-115 (321)
153 PRK06481 fumarate reductase fl 70.6 10 0.00022 30.7 5.0 42 3-44 204-250 (506)
154 TIGR01423 trypano_reduc trypan 70.4 10 0.00022 30.7 4.9 40 3-42 245-285 (486)
155 TIGR03385 CoA_CoA_reduc CoA-di 70.4 6.5 0.00014 30.8 3.7 40 3-44 193-232 (427)
156 TIGR02485 CobZ_N-term precorri 70.3 9.7 0.00021 30.0 4.7 41 3-43 137-181 (432)
157 PRK06467 dihydrolipoamide dehy 69.1 11 0.00024 30.2 4.9 39 4-42 229-271 (471)
158 COG0665 DadA Glycine/D-amino a 69.0 15 0.00033 27.9 5.5 41 5-46 173-213 (387)
159 TIGR03169 Nterm_to_SelD pyridi 67.7 9.5 0.0002 29.1 4.1 37 3-43 205-241 (364)
160 TIGR01373 soxB sarcosine oxida 66.7 17 0.00037 28.1 5.4 42 3-45 197-240 (407)
161 PF00890 FAD_binding_2: FAD bi 66.7 11 0.00024 29.2 4.4 43 4-46 156-204 (417)
162 PF01134 GIDA: Glucose inhibit 66.7 14 0.0003 29.4 4.9 41 2-43 109-150 (392)
163 TIGR01790 carotene-cycl lycope 66.6 12 0.00026 28.7 4.4 41 4-45 100-141 (388)
164 PRK05329 anaerobic glycerol-3- 66.2 15 0.00033 29.4 5.1 47 4-50 274-323 (422)
165 PRK06126 hypothetical protein; 65.4 11 0.00025 30.5 4.3 48 3-50 141-194 (545)
166 PRK11101 glpA sn-glycerol-3-ph 64.9 17 0.00037 29.8 5.3 42 4-45 164-211 (546)
167 PRK08132 FAD-dependent oxidore 64.8 16 0.00034 29.8 5.0 49 3-51 140-192 (547)
168 TIGR01438 TGR thioredoxin and 64.8 14 0.00031 29.8 4.7 40 3-42 234-276 (484)
169 PRK06185 hypothetical protein; 64.7 17 0.00037 28.1 5.0 48 3-50 123-175 (407)
170 TIGR03377 glycerol3P_GlpA glyc 63.7 16 0.00035 29.5 4.9 41 4-44 143-189 (516)
171 PRK06134 putative FAD-binding 63.4 17 0.00037 30.1 5.0 43 3-45 231-278 (581)
172 PRK07538 hypothetical protein; 61.1 17 0.00037 28.3 4.4 42 4-45 119-165 (413)
173 PF07992 Pyr_redox_2: Pyridine 60.6 8.5 0.00018 26.3 2.4 42 3-44 72-121 (201)
174 PF01494 FAD_binding_3: FAD bi 60.1 17 0.00037 26.8 4.2 42 4-45 126-172 (356)
175 PRK08274 tricarballylate dehyd 60.0 18 0.0004 28.7 4.5 41 3-43 145-190 (466)
176 PTZ00318 NADH dehydrogenase-li 59.5 18 0.00038 28.6 4.3 36 3-42 242-277 (424)
177 PTZ00318 NADH dehydrogenase-li 59.5 15 0.00033 28.9 3.9 35 9-43 81-123 (424)
178 PRK14989 nitrite reductase sub 58.9 23 0.0005 30.9 5.2 40 3-42 201-242 (847)
179 PRK06292 dihydrolipoamide dehy 58.9 25 0.00054 27.8 5.1 39 4-42 224-265 (460)
180 COG1251 NirB NAD(P)H-nitrite r 58.8 15 0.00032 31.8 3.9 41 3-45 73-113 (793)
181 PRK08244 hypothetical protein; 58.5 21 0.00046 28.6 4.6 48 3-50 114-165 (493)
182 KOG2404 Fumarate reductase, fl 57.6 10 0.00022 30.1 2.6 51 4-54 160-217 (477)
183 PRK12842 putative succinate de 57.6 23 0.0005 29.2 4.8 43 3-45 228-275 (574)
184 PRK05976 dihydrolipoamide dehy 57.2 24 0.00053 28.1 4.8 41 3-43 235-279 (472)
185 PLN02546 glutathione reductase 55.2 29 0.00063 28.8 5.0 40 3-42 307-347 (558)
186 PRK07512 L-aspartate oxidase; 54.0 17 0.00038 29.5 3.5 43 3-45 151-197 (513)
187 PTZ00058 glutathione reductase 54.0 31 0.00068 28.6 5.0 40 3-42 292-333 (561)
188 PF03807 F420_oxidored: NADP o 52.8 9.6 0.00021 23.2 1.5 21 33-53 61-81 (96)
189 TIGR00551 nadB L-aspartate oxi 52.4 30 0.00065 27.9 4.6 44 3-46 143-190 (488)
190 COG0492 TrxB Thioredoxin reduc 52.0 32 0.00068 26.3 4.5 34 10-44 81-114 (305)
191 PRK07121 hypothetical protein; 51.0 38 0.00083 27.2 5.0 43 3-45 191-239 (492)
192 PRK13512 coenzyme A disulfide 50.5 31 0.00067 27.3 4.4 36 3-42 203-238 (438)
193 PRK12843 putative FAD-binding 48.6 37 0.00081 28.1 4.7 44 3-46 235-283 (578)
194 KOG1346 Programmed cell death 48.3 10 0.00022 31.1 1.3 39 4-42 408-446 (659)
195 PRK07803 sdhA succinate dehydr 48.1 44 0.00095 28.0 5.1 43 3-45 165-213 (626)
196 COG2303 BetA Choline dehydroge 48.1 38 0.00083 27.9 4.7 51 2-52 216-273 (542)
197 PRK12835 3-ketosteroid-delta-1 48.0 39 0.00085 28.1 4.7 44 3-46 227-276 (584)
198 TIGR01292 TRX_reduct thioredox 47.4 51 0.0011 23.8 4.9 41 3-43 191-236 (300)
199 PRK09231 fumarate reductase fl 47.3 44 0.00095 27.8 4.9 43 3-45 148-196 (582)
200 PRK06263 sdhA succinate dehydr 46.4 35 0.00076 27.9 4.2 43 3-45 148-197 (543)
201 PRK12837 3-ketosteroid-delta-1 45.4 49 0.0011 26.9 4.9 43 3-45 188-235 (513)
202 KOG1336 Monodehydroascorbate/f 45.3 36 0.00077 27.9 3.9 38 4-43 142-179 (478)
203 PF10100 DUF2338: Uncharacteri 45.2 18 0.0004 29.1 2.3 32 31-63 81-112 (429)
204 PRK07804 L-aspartate oxidase; 44.7 43 0.00094 27.5 4.5 42 4-45 159-210 (541)
205 TIGR03143 AhpF_homolog putativ 44.4 47 0.001 27.3 4.6 38 4-43 75-112 (555)
206 PLN02697 lycopene epsilon cycl 44.3 47 0.001 27.4 4.6 41 4-45 207-248 (529)
207 COG4529 Uncharacterized protei 44.3 27 0.00059 28.6 3.2 32 10-41 127-160 (474)
208 PRK07843 3-ketosteroid-delta-1 44.0 52 0.0011 27.1 4.8 44 3-46 222-270 (557)
209 TIGR01811 sdhA_Bsu succinate d 43.6 57 0.0012 27.3 5.1 43 3-45 147-196 (603)
210 PRK07573 sdhA succinate dehydr 43.5 57 0.0012 27.5 5.1 44 3-46 184-233 (640)
211 TIGR01812 sdhA_frdA_Gneg succi 43.4 55 0.0012 26.9 4.9 43 3-45 143-191 (566)
212 COG0644 FixC Dehydrogenases (f 42.9 53 0.0012 25.6 4.6 40 3-42 109-149 (396)
213 PRK12844 3-ketosteroid-delta-1 42.7 55 0.0012 27.0 4.8 44 3-46 222-270 (557)
214 PRK03501 ppnK inorganic polyph 42.6 11 0.00023 28.4 0.6 52 24-76 137-190 (264)
215 PRK05945 sdhA succinate dehydr 42.5 42 0.00091 27.7 4.1 43 3-45 149-197 (575)
216 COG0446 HcaD Uncharacterized N 42.4 43 0.00094 25.3 4.0 39 4-42 193-234 (415)
217 PLN02727 NAD kinase 41.5 36 0.00079 30.3 3.7 76 32-110 861-937 (986)
218 PLN02935 Bifunctional NADH kin 41.2 39 0.00084 28.0 3.6 51 32-84 378-428 (508)
219 TIGR01816 sdhA_forward succina 41.1 61 0.0013 26.8 4.8 44 3-46 133-182 (565)
220 COG0446 HcaD Uncharacterized N 41.1 45 0.00098 25.2 3.9 40 3-45 67-106 (415)
221 PRK13977 myosin-cross-reactive 40.7 53 0.0011 27.6 4.4 39 3-41 240-289 (576)
222 PRK14694 putative mercuric red 40.6 58 0.0013 26.0 4.5 25 18-42 123-149 (468)
223 PRK06444 prephenate dehydrogen 40.4 21 0.00045 25.6 1.8 21 33-53 31-51 (197)
224 PRK02645 ppnK inorganic polyph 40.4 12 0.00025 28.7 0.5 52 23-75 166-219 (305)
225 PRK01911 ppnK inorganic polyph 40.3 14 0.0003 28.2 0.9 43 32-75 174-216 (292)
226 PRK08071 L-aspartate oxidase; 39.4 46 0.001 27.1 3.9 43 3-45 143-190 (510)
227 PF02153 PDH: Prephenate dehyd 38.7 28 0.0006 25.7 2.3 21 32-52 44-64 (258)
228 PRK06854 adenylylsulfate reduc 38.2 57 0.0012 27.3 4.3 42 4-45 148-195 (608)
229 PRK02649 ppnK inorganic polyph 38.2 15 0.00033 28.1 0.9 42 32-74 179-220 (305)
230 PRK06069 sdhA succinate dehydr 37.9 68 0.0015 26.5 4.7 43 3-45 152-200 (577)
231 PRK08401 L-aspartate oxidase; 37.7 63 0.0014 25.9 4.3 41 4-46 135-176 (466)
232 PRK08243 4-hydroxybenzoate 3-m 37.4 63 0.0014 24.9 4.2 42 3-44 117-162 (392)
233 TIGR00292 thiazole biosynthesi 37.3 58 0.0013 24.0 3.8 40 4-43 115-168 (254)
234 PRK06452 sdhA succinate dehydr 37.1 77 0.0017 26.2 4.9 43 3-45 150-198 (566)
235 PRK12834 putative FAD-binding 37.1 80 0.0017 25.9 4.9 44 3-46 166-228 (549)
236 PRK12845 3-ketosteroid-delta-1 36.8 85 0.0019 26.0 5.1 44 3-46 231-279 (564)
237 PTZ00153 lipoamide dehydrogena 36.0 77 0.0017 27.0 4.7 39 4-42 369-424 (659)
238 PLN02464 glycerol-3-phosphate 35.9 98 0.0021 26.1 5.3 42 4-45 247-296 (627)
239 PRK00561 ppnK inorganic polyph 35.9 20 0.00042 26.9 1.1 50 24-74 125-176 (259)
240 PRK03708 ppnK inorganic polyph 35.8 19 0.00041 27.2 1.0 52 23-75 152-205 (277)
241 PRK08626 fumarate reductase fl 35.4 80 0.0017 26.7 4.8 44 3-46 172-221 (657)
242 PF07542 ATP12: ATP12 chaperon 35.0 56 0.0012 21.6 3.1 37 15-51 9-45 (122)
243 TIGR01789 lycopene_cycl lycope 34.9 67 0.0014 24.9 4.0 35 6-44 103-137 (370)
244 PRK12810 gltD glutamate syntha 34.5 75 0.0016 25.4 4.3 39 4-42 344-397 (471)
245 PRK12839 hypothetical protein; 34.4 1E+02 0.0022 25.6 5.1 43 3-45 228-276 (572)
246 PF02080 TrkA_C: TrkA-C domain 34.2 52 0.0011 18.6 2.6 41 8-50 26-67 (71)
247 PRK04885 ppnK inorganic polyph 33.4 20 0.00043 26.9 0.8 40 32-72 146-185 (265)
248 TIGR03140 AhpF alkyl hydropero 32.7 76 0.0016 25.8 4.1 40 3-42 402-447 (515)
249 PRK14077 pnk inorganic polypho 32.7 24 0.00053 26.8 1.2 41 32-73 175-215 (287)
250 PRK05192 tRNA uridine 5-carbox 32.1 96 0.0021 26.4 4.6 41 3-44 115-156 (618)
251 PRK11749 dihydropyrimidine deh 31.8 89 0.0019 24.8 4.3 40 3-42 325-384 (457)
252 TIGR03452 mycothione_red mycot 31.3 55 0.0012 26.1 3.1 22 21-42 119-140 (452)
253 COG0287 TyrA Prephenate dehydr 31.2 42 0.0009 25.4 2.2 22 33-54 64-85 (279)
254 PRK07395 L-aspartate oxidase; 31.1 61 0.0013 26.8 3.3 43 3-45 149-197 (553)
255 PRK04539 ppnK inorganic polyph 30.9 25 0.00055 26.8 1.0 49 23-72 168-218 (296)
256 PRK01231 ppnK inorganic polyph 30.6 19 0.00041 27.4 0.3 51 23-74 162-214 (295)
257 PTZ00306 NADH-dependent fumara 30.4 1E+02 0.0022 28.0 4.8 44 3-46 561-621 (1167)
258 PRK08275 putative oxidoreducta 30.2 1.2E+02 0.0026 24.9 4.9 43 3-45 151-200 (554)
259 PRK04176 ribulose-1,5-biphosph 30.1 66 0.0014 23.7 3.1 40 3-42 118-170 (257)
260 PRK02155 ppnK NAD(+)/NADH kina 29.8 21 0.00046 27.1 0.4 48 24-72 164-213 (291)
261 PF02558 ApbA: Ketopantoate re 29.7 35 0.00075 22.4 1.5 21 32-52 66-86 (151)
262 PRK09078 sdhA succinate dehydr 29.5 1.1E+02 0.0023 25.6 4.5 44 3-46 163-213 (598)
263 PRK05675 sdhA succinate dehydr 29.3 1.2E+02 0.0026 25.1 4.8 44 3-46 140-190 (570)
264 PRK02231 ppnK inorganic polyph 29.2 27 0.00059 26.3 0.9 49 23-72 143-193 (272)
265 TIGR02023 BchP-ChlP geranylger 28.9 96 0.0021 23.9 4.0 39 4-43 107-153 (388)
266 KOG2820 FAD-dependent oxidored 28.6 1.7E+02 0.0037 23.4 5.2 48 4-52 168-218 (399)
267 TIGR01176 fum_red_Fp fumarate 28.6 1.3E+02 0.0028 25.1 4.9 43 3-45 147-195 (580)
268 PRK08818 prephenate dehydrogen 28.5 43 0.00093 26.4 2.0 43 9-53 29-71 (370)
269 PF10116 Host_attach: Protein 28.2 68 0.0015 21.2 2.7 28 33-61 90-117 (138)
270 TIGR00031 UDP-GALP_mutase UDP- 28.1 85 0.0018 24.8 3.6 41 3-47 209-249 (377)
271 PRK03372 ppnK inorganic polyph 27.3 29 0.00064 26.6 0.8 48 24-72 173-222 (306)
272 PLN02172 flavin-containing mon 27.3 72 0.0016 25.8 3.1 44 6-52 252-295 (461)
273 PRK14075 pnk inorganic polypho 27.1 29 0.00063 25.8 0.8 31 24-54 134-166 (256)
274 KOG0405 Pyridine nucleotide-di 26.8 1.2E+02 0.0026 24.5 4.1 40 3-42 244-284 (478)
275 PLN02661 Putative thiazole syn 26.8 86 0.0019 24.8 3.3 40 3-42 187-241 (357)
276 PRK08958 sdhA succinate dehydr 26.1 1.5E+02 0.0032 24.7 4.8 44 3-46 157-207 (588)
277 PLN02785 Protein HOTHEAD 26.0 1.6E+02 0.0034 24.7 4.9 50 2-51 233-296 (587)
278 PRK01185 ppnK inorganic polyph 25.9 24 0.00052 26.6 0.2 49 23-72 145-195 (271)
279 TIGR01915 npdG NADPH-dependent 25.1 65 0.0014 22.9 2.3 21 32-52 67-87 (219)
280 PRK08205 sdhA succinate dehydr 24.8 1.5E+02 0.0033 24.5 4.7 43 3-45 154-206 (583)
281 PTZ00139 Succinate dehydrogena 24.6 1.5E+02 0.0033 24.9 4.6 43 3-45 180-229 (617)
282 PTZ00431 pyrroline carboxylate 23.7 63 0.0014 23.7 2.0 21 33-53 57-77 (260)
283 PRK03378 ppnK inorganic polyph 23.1 38 0.00083 25.7 0.8 49 23-72 163-213 (292)
284 COG0578 GlpA Glycerol-3-phosph 22.9 1.2E+02 0.0027 25.3 3.7 68 5-79 180-254 (532)
285 KOG4254 Phytoene desaturase [C 22.4 1.6E+02 0.0036 24.5 4.2 51 4-54 279-331 (561)
286 PRK08507 prephenate dehydrogen 22.1 75 0.0016 23.4 2.2 19 33-51 58-76 (275)
287 PF14604 SH3_9: Variant SH3 do 21.8 1.4E+02 0.003 16.0 2.7 28 3-30 12-39 (49)
288 COG0445 GidA Flavin-dependent 21.2 63 0.0014 27.3 1.7 42 3-45 115-158 (621)
289 PF05800 GvpO: Gas vesicle syn 21.0 1E+02 0.0022 19.9 2.3 17 10-26 39-56 (100)
290 PRK07057 sdhA succinate dehydr 20.9 2.1E+02 0.0046 23.8 4.8 43 3-45 162-211 (591)
291 TIGR00136 gidA glucose-inhibit 20.9 2.2E+02 0.0048 24.3 4.8 42 3-45 111-154 (617)
292 PLN02256 arogenate dehydrogena 20.7 73 0.0016 24.2 1.9 21 33-53 92-112 (304)
293 COG4635 HemG Flavodoxin [Energ 20.5 1.2E+02 0.0025 21.5 2.7 48 31-80 45-94 (175)
294 PRK07634 pyrroline-5-carboxyla 20.5 86 0.0019 22.4 2.2 20 33-52 66-85 (245)
295 PRK04761 ppnK inorganic polyph 20.5 48 0.001 24.7 0.8 40 33-73 133-172 (246)
296 TIGR00745 apbA_panE 2-dehydrop 20.2 66 0.0014 23.5 1.5 20 32-51 58-77 (293)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.86 E-value=1.3e-22 Score=150.37 Aligned_cols=108 Identities=19% Similarity=0.382 Sum_probs=96.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc-cccccCEEEEcCCHHHHHhhcCC----CCCHHHHHHhhcCCccceEEEEEee
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK-LRGQFDVVVIAHKGKCANRLLGS----SGLPQIARQMKRLELSSIWALLAAF 77 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g-~~~~~D~VIlA~Pa~qaa~LL~~----~~~~~~a~~l~~i~~~p~~~v~l~~ 77 (119)
.++|.++++|++|.+.++.|+|..++| ....||.||+|.|+||++.||.. .. .++.+.+..+.|.|||+++|+|
T Consensus 117 dL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p-~~l~~~~a~V~y~Pc~s~~lg~ 195 (331)
T COG3380 117 DLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP-AALRAALADVVYAPCWSAVLGY 195 (331)
T ss_pred cchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccch-HHHHHhhccceehhHHHHHhcC
Confidence 578999999999999999999998655 66689999999999999999954 23 4688899999999999999999
Q ss_pred cCCCCCCCCCceeeEEECCCCcEEEEEecCCCCCCCCCC
Q 041088 78 EDPLPLGSASTFEGAFVKGVDSVSWMANNSAKLLNSQSD 116 (119)
Q Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~wv~~~s~Kp~~~~~~ 116 (119)
++++..| ++|.++.++ +|.|++||.+|+||..-+
T Consensus 196 ~q~l~~P----~~G~~vdg~-~laWla~d~sK~g~~p~~ 229 (331)
T COG3380 196 PQPLDRP----WPGNFVDGH-PLAWLARDASKKGHVPDG 229 (331)
T ss_pred CccCCCC----CCCcccCCC-eeeeeeccccCCCCCCcC
Confidence 9999999 999877776 999999999999998654
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.45 E-value=1.6e-12 Score=102.27 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=85.7
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCC-C
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPL-P 82 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~-~ 82 (119)
.+|+++++|++|.+.+++|.+..++|....||+||+|+|++++..||+... +...+.+.+++|.|+.++++.|+++. .
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~-~~~~~~l~~l~~~~~~~v~l~~~~~~~~ 316 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSELS-NSASSHLDKIHSPPVANVNLGFPEGSVD 316 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcccC-HHHHHHHhcCCCCceEEEEEEEchHHcC
Confidence 469999999999999999999876664456899999999999999998876 67888899999999999999998763 2
Q ss_pred CCCCCceeeEEECCC---CcEEEEEecCCCCCCCCC
Q 041088 83 LGSASTFEGAFVKGV---DSVSWMANNSAKLLNSQS 115 (119)
Q Consensus 83 ~p~~~~~~~~~~~~~---~~~~wv~~~s~Kp~~~~~ 115 (119)
.+ ...-+..+... +.+.|++..+.+|++...
T Consensus 317 ~~--~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~ 350 (462)
T TIGR00562 317 GE--LEGFGFLISRSSKFAILGCIFTSKLFPNRAPP 350 (462)
T ss_pred CC--CCceEEEccCCCCCceEEEEEEccccCCcCCC
Confidence 22 00113444332 368999988888877553
No 3
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.36 E-value=1.8e-11 Score=94.31 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=79.1
Q ss_pred eeEEcCceeEEEEecCCeEEEEe-CCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSE-NVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLP 82 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~-~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~~ 82 (119)
++|++|++|++|...+++|.+.. .+|....||+||+|+|++++.+||+.. ...+.+.+++|.++.+++|.|+++.+
T Consensus 212 ~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~---~~~~~l~~~~~~~~~~v~l~~~~~~~ 288 (419)
T TIGR03467 212 GEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE---DLGALLTALGYSPITTVHLRLDRAVR 288 (419)
T ss_pred CEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc---hHHHHHhhcCCcceEEEEEEeCCCcC
Confidence 57999999999999988865433 234445699999999999999998752 45567889999999999999999886
Q ss_pred CCCCCceeeEEECCCCcEEEEEecCCCCCC
Q 041088 83 LGSASTFEGAFVKGVDSVSWMANNSAKLLN 112 (119)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~wv~~~s~Kp~~ 112 (119)
.+ .+...+.+. ..+|+++++.+++.
T Consensus 289 ~~----~~~~~~~~~-~~~~~~~~~~~~~~ 313 (419)
T TIGR03467 289 LP----APMVGLVGG-LAQWLFDRGQLAGE 313 (419)
T ss_pred CC----CCeeeecCC-ceeEEEECCcCCCC
Confidence 44 334444444 88999988877654
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=99.28 E-value=6.9e-11 Score=94.00 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=82.7
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeC--Cc-cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSEN--VK-LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~--~g-~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
.+|++|++|++|++.+++ |.|... +| ....||+||+|+|+++++.|+.... ++..+.+++++|.++++|++.|++
T Consensus 252 ~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~-~~~~~~l~~~~~~~~~~v~l~~~~ 330 (496)
T PLN02576 252 DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS-PAAADALPEFYYPPVAAVTTSYPK 330 (496)
T ss_pred CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC-HHHHHHhccCCCCceEEEEEEEch
Confidence 359999999999998886 988653 33 3457999999999999999998766 778889999999999999999988
Q ss_pred CCCCCCC---CceeeEE--ECC--C-CcEEEEEecCCCCCCCCC
Q 041088 80 PLPLGSA---STFEGAF--VKG--V-DSVSWMANNSAKLLNSQS 115 (119)
Q Consensus 80 ~~~~p~~---~~~~~~~--~~~--~-~~~~wv~~~s~Kp~~~~~ 115 (119)
+....+. ..+.++. +.. . +.+.|+++.+.+|++...
T Consensus 331 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~ 374 (496)
T PLN02576 331 EAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPE 374 (496)
T ss_pred HHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCC
Confidence 6431100 0033332 221 1 257899998888887553
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.13 E-value=1.9e-09 Score=84.23 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=78.1
Q ss_pred eEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCC-CC
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPL-PL 83 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~-~~ 83 (119)
+|+++++|++|+..+++|.|...+|....||+||+|+|++++..|+.+ +...+.+..++|.++.++++.|+++. ..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 311 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKTIPSTSVATVALAFPESATNL 311 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhCCCCCceEEEEEEeccccCCC
Confidence 699999999999999999988766655579999999999999999765 34567788999999999999999874 22
Q ss_pred CCCCceeeEEEC-CCC-cEEEEEecCCCC
Q 041088 84 GSASTFEGAFVK-GVD-SVSWMANNSAKL 110 (119)
Q Consensus 84 p~~~~~~~~~~~-~~~-~~~wv~~~s~Kp 110 (119)
+ ...++++. +.+ .+.++..++.|.
T Consensus 312 ~---~~~~~~~~~~~~~~~~~~~~~s~~~ 337 (451)
T PRK11883 312 P---DGTGFLVARNSDYTITACTWTSKKW 337 (451)
T ss_pred C---CceEEEecCCCCCcEEEEEeEcCcC
Confidence 2 13355554 222 577887777663
No 6
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.04 E-value=2.8e-09 Score=80.96 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=81.9
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHh--hcCCCCCHHHHHHhhcCCccceEEEEEeecCCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANR--LLGSSGLPQIARQMKRLELSSIWALLAAFEDPL 81 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~--LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~ 81 (119)
.+|+++++|++|+..++++.+...+|....||+||+|+|.+.+.. +++... ....+.+..+.|.++..++|.|+++.
T Consensus 224 ~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~-~~~~~a~~~~~~~~~~~v~l~~~~~~ 302 (450)
T PF01593_consen 224 GEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP-EDKRRAIENLPYSSVSKVFLGFDRPF 302 (450)
T ss_dssp GGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH-HHHHHHHHTEEEEEEEEEEEEESSGG
T ss_pred ceeecCCcceeccccccccccccccceEEecceeeecCchhhhhhhhhccccc-ccccccccccccCcceeEEEeeeccc
Confidence 369999999999999999999887775567999999999999994 555544 34567778999999999999999987
Q ss_pred CCCCCCceeeEEECCC-CcEEEEEecCCCCCC
Q 041088 82 PLGSASTFEGAFVKGV-DSVSWMANNSAKLLN 112 (119)
Q Consensus 82 ~~p~~~~~~~~~~~~~-~~~~wv~~~s~Kp~~ 112 (119)
+.+. ....+....+. ..+.++...+.++++
T Consensus 303 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (450)
T PF01593_consen 303 WPPD-IDFFGILYSDGFSPIGYVSDPSKFPGR 333 (450)
T ss_dssp GGST-TTESEEEEESSTSSEEEEEEECCTTSC
T ss_pred cccc-ccccceecccCccccccccccccCccc
Confidence 6441 01445555553 378888888888876
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.00 E-value=2.8e-09 Score=84.26 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=64.3
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPL 81 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~ 81 (119)
.+|+++++|++|+..+++|.+...+|....+|+||+|+|++++.+|+.. +.+...+.++.|.++.+++++|+++.
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~---~~l~~~~~~~~~~~~~~v~l~~~~~~ 313 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQS---NELNEQFHTFKNSSLISIYLGFDILD 313 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC---cchhHHHhcCCCCceEEEEEEechhh
Confidence 3699999999999999999998766644568999999999999999875 35667788999999999999999753
No 8
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.83 E-value=1.8e-08 Score=80.56 Aligned_cols=81 Identities=9% Similarity=-0.110 Sum_probs=62.3
Q ss_pred eeEEcCceeEEEEecC--CeEE-E---EeCCc---cccccCEEEEcCCHHHHHhhcCCCCC-HHHHHHhhcCCccceEEE
Q 041088 4 FSIVRPCWISNLEPFN--GMWH-L---SENVK---LRGQFDVVVIAHKGKCANRLLGSSGL-PQIARQMKRLELSSIWAL 73 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~--~~w~-l---~~~~g---~~~~~D~VIlA~Pa~qaa~LL~~~~~-~~~a~~l~~i~~~p~~~v 73 (119)
++|+++++|++|+.++ ++|. + ..++| ....+|+||+|+|++.+++||++... ....+.+..++|.||.+|
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v 313 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATV 313 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEE
Confidence 5799999999999865 3442 3 23222 33468999999999999999987420 235677889999999999
Q ss_pred EEeecCCCCCC
Q 041088 74 LAAFEDPLPLG 84 (119)
Q Consensus 74 ~l~~~~~~~~p 84 (119)
+|+|++++..|
T Consensus 314 ~l~~~~~v~~~ 324 (474)
T TIGR02732 314 QLRYDGWVTEL 324 (474)
T ss_pred EEEeccccccc
Confidence 99999987765
No 9
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.82 E-value=6.1e-08 Score=77.10 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=78.4
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCC--
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPL-- 81 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~-- 81 (119)
.+|+++++|+.|.+++.+|.+..++|....||+||+|+|++.+..||+.. .....+.++.|.+..+|.++|+++.
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~---~~~~~~~~~~~~s~~~vv~~~~~~~~~ 303 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGDE---AVSKAAKELQYTSVVTVVVGLDEKDNP 303 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCc---chhhhhhhccccceEEEEEEecccccc
Confidence 45899999999999988777776666556799999999999999999993 3556778899999999999999862
Q ss_pred CCCCCCceeeEEECCCCc-EEEEEecCCCC
Q 041088 82 PLGSASTFEGAFVKGVDS-VSWMANNSAKL 110 (119)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~-~~wv~~~s~Kp 110 (119)
.+| +..++.+.+.++ +.-+.-.|.|-
T Consensus 304 ~~~---~~~g~~iad~~~~~~a~~~~S~~~ 330 (444)
T COG1232 304 ALP---DGYGLLIADDDPYILAITFHSNKW 330 (444)
T ss_pred CCC---CceEEEEecCCCcceeEEEecccC
Confidence 233 255788888655 55555555543
No 10
>PRK07233 hypothetical protein; Provisional
Probab=98.81 E-value=8.1e-08 Score=74.56 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=64.5
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLP 82 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~~ 82 (119)
++|+++++|++|+.++++|.+...++....+|+||+|+|++.+.+|++... +...+.++++.|.++.++++.|++++.
T Consensus 213 ~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (434)
T PRK07233 213 GEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP-ADVLARLRRIDYQGVVCMVLKLRRPLT 290 (434)
T ss_pred ceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc-HHHHhhhcccCccceEEEEEEecCCCC
Confidence 579999999999988888865443444456999999999999999997655 566677888999999999999998764
No 11
>PLN02612 phytoene desaturase
Probab=98.78 E-value=7.3e-08 Score=78.65 Aligned_cols=81 Identities=15% Similarity=-0.027 Sum_probs=64.1
Q ss_pred eeEEcCceeEEEEecCCeE--EEEeCCccccccCEEEEcCCHHHHHhhcCCCCC-HHHHHHhhcCCccceEEEEEeecCC
Q 041088 4 FSIVRPCWISNLEPFNGMW--HLSENVKLRGQFDVVVIAHKGKCANRLLGSSGL-PQIARQMKRLELSSIWALLAAFEDP 80 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w--~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~-~~~a~~l~~i~~~p~~~v~l~~~~~ 80 (119)
++|++|++|++|+.+++++ .+...+|....+|+||+|+|++.+..||+.... ..+.+.+.++.+.|+.+++|+|+++
T Consensus 323 ~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~ 402 (567)
T PLN02612 323 GEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRK 402 (567)
T ss_pred CEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcc
Confidence 5799999999999876663 355545544568999999999999999876421 2566777888999999999999999
Q ss_pred CCCC
Q 041088 81 LPLG 84 (119)
Q Consensus 81 ~~~p 84 (119)
++.+
T Consensus 403 ~~~~ 406 (567)
T PLN02612 403 LKNT 406 (567)
T ss_pred cCCC
Confidence 7644
No 12
>PLN02268 probable polyamine oxidase
Probab=98.74 E-value=2.2e-07 Score=72.91 Aligned_cols=78 Identities=8% Similarity=-0.078 Sum_probs=63.9
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhh-c---CCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRL-L---GSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~L-L---~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
++|+++++|++|.+.+++|.|...+|....||+||+|+|...+.++ + +... +...+.++++.|.++.-+++.|++
T Consensus 211 ~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~ai~~~~~g~~~Kv~l~f~~ 289 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEAISDLGVGIENKIALHFDS 289 (435)
T ss_pred CceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHHHHhCCccceeEEEEEeCC
Confidence 4699999999999999999998876644569999999999998754 2 2223 445677889999999999999999
Q ss_pred CCC
Q 041088 80 PLP 82 (119)
Q Consensus 80 ~~~ 82 (119)
+.+
T Consensus 290 ~fw 292 (435)
T PLN02268 290 VFW 292 (435)
T ss_pred CCC
Confidence 865
No 13
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.66 E-value=3e-07 Score=77.73 Aligned_cols=77 Identities=8% Similarity=-0.069 Sum_probs=63.7
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHh----hcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANR----LLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~----LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
+.|++|++|++|...+++|.+..+ |....||+||+|+|...+.+ +.+... +...+.++++.|.++.-|+|.|++
T Consensus 447 L~I~ln~~V~~I~~~~dgV~V~~~-G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP-~~K~~AI~~l~yG~~~KV~L~F~~ 524 (808)
T PLN02328 447 LPIFYERTVESIRYGVDGVIVYAG-GQEFHGDMVLCTVPLGVLKKGSIEFYPELP-QRKKDAIQRLGYGLLNKVALLFPY 524 (808)
T ss_pred CCcccCCeeEEEEEcCCeEEEEeC-CeEEEcCEEEECCCHHHHhhcccccCCCCC-HHHHHHHHcCCCcceEEEEEEeCC
Confidence 468999999999999999988544 43456999999999999874 344444 566788999999999999999999
Q ss_pred CCC
Q 041088 80 PLP 82 (119)
Q Consensus 80 ~~~ 82 (119)
+.+
T Consensus 525 ~FW 527 (808)
T PLN02328 525 NFW 527 (808)
T ss_pred ccc
Confidence 865
No 14
>PLN02529 lysine-specific histone demethylase 1
Probab=98.61 E-value=6.5e-07 Score=75.14 Aligned_cols=77 Identities=10% Similarity=-0.037 Sum_probs=63.5
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhh----cCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRL----LGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~L----L~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
+.|++|++|++|...+++|.|..+++ ...||+||+|+|..++.++ .++.. +...+.+.++.|.++..|+|.|++
T Consensus 367 L~IrLnt~V~~I~~~~dGVtV~t~~~-~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~yG~v~KV~L~F~~ 444 (738)
T PLN02529 367 VPIFYGKTVDTIKYGNDGVEVIAGSQ-VFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLGFGLLNKVAMVFPS 444 (738)
T ss_pred CCEEcCCceeEEEEcCCeEEEEECCE-EEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCCCceeEEEEEEeCC
Confidence 56999999999999999999986544 3468999999999999853 23333 455678899999999999999999
Q ss_pred CCC
Q 041088 80 PLP 82 (119)
Q Consensus 80 ~~~ 82 (119)
+.+
T Consensus 445 ~FW 447 (738)
T PLN02529 445 VFW 447 (738)
T ss_pred ccc
Confidence 865
No 15
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.58 E-value=2.5e-07 Score=71.59 Aligned_cols=74 Identities=23% Similarity=0.158 Sum_probs=65.4
Q ss_pred eEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
.|.+++.|.+|.+..+|..|...+|....||+||+|+.++||+.||++.. ++-.+.|.++.|+.+-+|...+.+
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s-p~e~qll~a~~Ys~n~aVlhtd~~ 306 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDEPS-PEERQLLGALRYSANTAVLHTDAS 306 (447)
T ss_pred eeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCCCC-HHHHHHHHhhhhhhceeEEeeccc
Confidence 48899999999999999888776676557999999999999999999877 777789999999999999998873
No 16
>PRK07208 hypothetical protein; Provisional
Probab=98.48 E-value=2e-06 Score=68.25 Aligned_cols=81 Identities=9% Similarity=-0.079 Sum_probs=63.1
Q ss_pred eeEEcCceeEEEEecCCeEE--EEe--CCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEee
Q 041088 4 FSIVRPCWISNLEPFNGMWH--LSE--NVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAF 77 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~--l~~--~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~ 77 (119)
++|++|++|++|..++++|. +.. .+| ....+|+||+|+|++.+..+|.+...+...+.++.++|.++.+++++|
T Consensus 233 ~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~l~~ 312 (479)
T PRK07208 233 GKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDFITVGLLV 312 (479)
T ss_pred CEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCcceeEEEEEEe
Confidence 57999999999999888763 332 223 234689999999999999998743325666778899999999999999
Q ss_pred cCCCCCC
Q 041088 78 EDPLPLG 84 (119)
Q Consensus 78 ~~~~~~p 84 (119)
+++...+
T Consensus 313 ~~~~~~~ 319 (479)
T PRK07208 313 KELNLFP 319 (479)
T ss_pred cCCCCCC
Confidence 9875544
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.47 E-value=1.2e-06 Score=69.08 Aligned_cols=81 Identities=12% Similarity=-0.014 Sum_probs=61.1
Q ss_pred eeEEcCceeEEEEecCCe----EEEEeCCc-c--ccccCEEEEcCCHHHHHhhcCCCCC-HHHHHHhhcCCccceEEEEE
Q 041088 4 FSIVRPCWISNLEPFNGM----WHLSENVK-L--RGQFDVVVIAHKGKCANRLLGSSGL-PQIARQMKRLELSSIWALLA 75 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~----w~l~~~~g-~--~~~~D~VIlA~Pa~qaa~LL~~~~~-~~~a~~l~~i~~~p~~~v~l 75 (119)
.+|++|++|++|...+++ +++...++ . ...+|+||+|+|++.+.+||+.... ..+.+.+++++|.++..+++
T Consensus 228 ~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l 307 (453)
T TIGR02731 228 GEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHI 307 (453)
T ss_pred CEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEE
Confidence 579999999999875544 33322222 1 4468999999999999999976421 24667788889999999999
Q ss_pred eecCCCCCC
Q 041088 76 AFEDPLPLG 84 (119)
Q Consensus 76 ~~~~~~~~p 84 (119)
+|++++..+
T Consensus 308 ~~~~~~~~~ 316 (453)
T TIGR02731 308 WFDRKLTTV 316 (453)
T ss_pred EEccccCCC
Confidence 999987643
No 18
>PLN02487 zeta-carotene desaturase
Probab=98.46 E-value=1.1e-06 Score=71.95 Aligned_cols=81 Identities=11% Similarity=-0.140 Sum_probs=62.0
Q ss_pred eeEEcCceeEEEEecC--Ce----EEEEe--C-CccccccCEEEEcCCHHHHHhhcCCCCC-HHHHHHhhcCCccceEEE
Q 041088 4 FSIVRPCWISNLEPFN--GM----WHLSE--N-VKLRGQFDVVVIAHKGKCANRLLGSSGL-PQIARQMKRLELSSIWAL 73 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~--~~----w~l~~--~-~g~~~~~D~VIlA~Pa~qaa~LL~~~~~-~~~a~~l~~i~~~p~~~v 73 (119)
++|+++++|++|..++ ++ +.+.. + ++....+|+||+|+|.+.+.+|+++... ....+.+..+++.||.+|
T Consensus 310 g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 310 GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEE
Confidence 5799999999999863 33 33444 2 2233458999999999999999987631 123567788999999999
Q ss_pred EEeecCCCCCC
Q 041088 74 LAAFEDPLPLG 84 (119)
Q Consensus 74 ~l~~~~~~~~p 84 (119)
+|.|++++..|
T Consensus 390 ~L~~d~~v~~~ 400 (569)
T PLN02487 390 QLRYNGWVTEM 400 (569)
T ss_pred EEEeccccccc
Confidence 99999988765
No 19
>PLN02568 polyamine oxidase
Probab=98.34 E-value=4.3e-06 Score=68.09 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=63.1
Q ss_pred eEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHh-------hcCC-CCCHHHHHHhhcCCccceEEEEEe
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANR-------LLGS-SGLPQIARQMKRLELSSIWALLAA 76 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~-------LL~~-~~~~~~a~~l~~i~~~p~~~v~l~ 76 (119)
.|++|++|++|.+.+++|.|.+.+|....||+||+|+|...+.. .+.+ .. ..-.+.++.+.|-.+.-+.|.
T Consensus 256 ~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP-~~k~~Ai~~l~~g~~~Ki~l~ 334 (539)
T PLN02568 256 TIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLP-DFKTDAISRLGFGVVNKLFVE 334 (539)
T ss_pred EEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCC-HHHHHHHHhcCCceeeEEEEE
Confidence 59999999999999999999887765556999999999999985 2433 33 344677889999999999999
Q ss_pred ecCCCC
Q 041088 77 FEDPLP 82 (119)
Q Consensus 77 ~~~~~~ 82 (119)
|+++.+
T Consensus 335 f~~~fW 340 (539)
T PLN02568 335 LSPRPD 340 (539)
T ss_pred ecCCCC
Confidence 999864
No 20
>PLN03000 amine oxidase
Probab=98.28 E-value=4.4e-06 Score=71.17 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=65.5
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHH----hhcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCAN----RLLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa----~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
+.|++++.|++|+..++++.|...++ ...+|+||+|+|...+. ++.++.. +...+.+.++.|..+.-|+|.|++
T Consensus 391 L~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~~G~l~KViL~Fd~ 468 (881)
T PLN03000 391 VPILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELP-QRKLDCIKRLGFGLLNKVAMLFPY 468 (881)
T ss_pred CCcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCC-HHHHHHHHcCCCcceEEEEEEeCC
Confidence 46999999999999999999987544 34689999999999988 5556665 566788899999999999999999
Q ss_pred CCC
Q 041088 80 PLP 82 (119)
Q Consensus 80 ~~~ 82 (119)
+.+
T Consensus 469 ~FW 471 (881)
T PLN03000 469 VFW 471 (881)
T ss_pred ccc
Confidence 876
No 21
>PLN02676 polyamine oxidase
Probab=98.14 E-value=1.4e-05 Score=64.22 Aligned_cols=79 Identities=3% Similarity=-0.099 Sum_probs=63.3
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHh--h-c-CCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANR--L-L-GSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~--L-L-~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
..|++|++|++|...+++..|.+.+|....+|+||+|+|...+.. + + ++.. +...+.++++.|....=+.+.|++
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ai~~l~~g~~~Kv~l~f~~ 323 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIEAIYQFDMAVYTKIFLKFPY 323 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHHHHHhCCceeeEEEEEEeCC
Confidence 469999999999999999999887775557999999999998864 1 2 2223 334567788999999999999999
Q ss_pred CCCC
Q 041088 80 PLPL 83 (119)
Q Consensus 80 ~~~~ 83 (119)
+.+.
T Consensus 324 ~FW~ 327 (487)
T PLN02676 324 KFWP 327 (487)
T ss_pred CCCC
Confidence 8763
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.08 E-value=3.2e-05 Score=61.80 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=58.5
Q ss_pred ceeEEcCceeEEEEecCCe--EEEEeCC----ccccccCEEEEcCCHHHHHhhcCCCCC-HHHHHHhhcCCccc-eEEEE
Q 041088 3 MFSIVRPCWISNLEPFNGM--WHLSENV----KLRGQFDVVVIAHKGKCANRLLGSSGL-PQIARQMKRLELSS-IWALL 74 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~--w~l~~~~----g~~~~~D~VIlA~Pa~qaa~LL~~~~~-~~~a~~l~~i~~~p-~~~v~ 74 (119)
.++|+++++|++|..++++ |.+..++ +....+|+||+++|+..+.+||+.... +.+.+.+++++|++ .++++
T Consensus 246 G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~ 325 (492)
T TIGR02733 246 GGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFY 325 (492)
T ss_pred CCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEE
Confidence 3679999999999988763 4444333 133469999999999999999975211 45667788888888 45889
Q ss_pred EeecCC
Q 041088 75 AAFEDP 80 (119)
Q Consensus 75 l~~~~~ 80 (119)
+++++.
T Consensus 326 l~~~~~ 331 (492)
T TIGR02733 326 LGVKRA 331 (492)
T ss_pred Eeeccc
Confidence 999874
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.06 E-value=4.1e-05 Score=60.85 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=80.1
Q ss_pred eEEcCceeEEEEecCCeEEEEeCC-ccccccCEEEEcCCHHHHHhhc-CC-CCCHHHHHHhhcCCccceEEEEEeecCCC
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENV-KLRGQFDVVVIAHKGKCANRLL-GS-SGLPQIARQMKRLELSSIWALLAAFEDPL 81 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~-g~~~~~D~VIlA~Pa~qaa~LL-~~-~~~~~~a~~l~~i~~~p~~~v~l~~~~~~ 81 (119)
.|.++.+|.+|.+.+++.+|+..+ +.. .+|-+|||+|...+.++- .+ .. +++.+.+..++|.++.=..+.|+++.
T Consensus 222 ~I~~~~~V~rI~q~~~gV~Vt~~~~~~~-~ad~~i~tiPl~~l~qI~f~P~l~-~~~~~a~~~~~y~~~~K~~v~f~rpF 299 (450)
T COG1231 222 RILLNEPVRRIDQDGDGVTVTADDVGQY-VADYVLVTIPLAILGQIDFAPLLP-AEYKQAAKGVPYGSATKIGVAFSRPF 299 (450)
T ss_pred eEEecCceeeEEEcCCeEEEEeCCcceE-EecEEEEecCHHHHhhcccCCCCC-HHHHHHhcCcCcchheeeeeecCchh
Confidence 588999999999999999999876 543 589999999999998874 33 34 67888888899999999999999998
Q ss_pred CCCCCCceeeEEECCCCcEEEEEecCC
Q 041088 82 PLGSASTFEGAFVKGVDSVSWMANNSA 108 (119)
Q Consensus 82 ~~p~~~~~~~~~~~~~~~~~wv~~~s~ 108 (119)
+-.++ ...|..+.|. .+..++.+|+
T Consensus 300 Wee~~-~l~G~~~tD~-~~~~i~~~s~ 324 (450)
T COG1231 300 WEEAG-ILGGESLTDL-GLGFISYPSA 324 (450)
T ss_pred hhhcc-cCCceEeecC-CcceEecCcc
Confidence 74422 2557777776 5777777776
No 24
>PLN02976 amine oxidase
Probab=97.75 E-value=0.00015 Score=64.86 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=60.3
Q ss_pred eeEEcCceeEEEEec----------CCeEEEEeCCccccccCEEEEcCCHHHHHh---hc-CCCCCHHHHHHhhcCCccc
Q 041088 4 FSIVRPCWISNLEPF----------NGMWHLSENVKLRGQFDVVVIAHKGKCANR---LL-GSSGLPQIARQMKRLELSS 69 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~----------~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~---LL-~~~~~~~~a~~l~~i~~~p 69 (119)
+.|++|++|++|.+. ++++.|.+.+|....||+||+|+|...+.. .+ +++. ....+.+..+.|-.
T Consensus 946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~ 1024 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGV 1024 (1713)
T ss_pred CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhcccc
Confidence 469999999999884 467888887775556999999999998762 23 2333 33446678899999
Q ss_pred eEEEEEeecCCCC
Q 041088 70 IWALLAAFEDPLP 82 (119)
Q Consensus 70 ~~~v~l~~~~~~~ 82 (119)
..=++|.|+++.+
T Consensus 1025 lnKV~LeFdrpFW 1037 (1713)
T PLN02976 1025 LNKVVLEFPEVFW 1037 (1713)
T ss_pred ceEEEEEeCCccc
Confidence 9999999999866
No 25
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.58 E-value=0.00037 Score=55.42 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=78.5
Q ss_pred eeEEcCceeEEEEecC-CeEEEEe--CCc-cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFN-GMWHLSE--NVK-LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~-~~w~l~~--~~g-~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
+.|.++-++..+.... ++|.+.. .++ ....++.+..|.|++.++.||+... +.++..|.+|+|.|+++|.+.|+.
T Consensus 264 v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~-~sls~~L~ei~y~~V~vVn~~yp~ 342 (491)
T KOG1276|consen 264 VSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQ-NSLSNALSEIPYVPVAVVNTYYPK 342 (491)
T ss_pred hhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccc-hhhhhhhhcCCCCceEEEEEeccC
Confidence 3455566666665543 5598875 333 3335677778999999999999988 889999999999999999999988
Q ss_pred C-CCCCCCCcee--eEEEC-----CCCcEEEEEecCCCCCCCCCC
Q 041088 80 P-LPLGSASTFE--GAFVK-----GVDSVSWMANNSAKLLNSQSD 116 (119)
Q Consensus 80 ~-~~~p~~~~~~--~~~~~-----~~~~~~wv~~~s~Kp~~~~~~ 116 (119)
+ ..+| -. |..+. +.+.+.-|++-..=|.|++++
T Consensus 343 ~~~~~p----l~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~ 383 (491)
T KOG1276|consen 343 EKIDLP----LQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP 383 (491)
T ss_pred cccccc----cccceeeccCCCCCCCceeEEEeecccCCCCCCCc
Confidence 6 5555 33 33444 112688888877777777764
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.48 E-value=0.00058 Score=54.80 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=62.4
Q ss_pred eEEcCceeEEEEecC-CeEEEEeCCccccccCEEEEcCCHHHHHh----hcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 5 SIVRPCWISNLEPFN-GMWHLSENVKLRGQFDVVVIAHKGKCANR----LLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~-~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~----LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
.++++++|..|...+ +...|+..+|....||+||||+|--...+ |+.+.....=.+.++++.|-.+-=+.|.|.+
T Consensus 245 ~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~ 324 (498)
T KOG0685|consen 245 RIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEE 324 (498)
T ss_pred hhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccC
Confidence 467779999999886 45788888886678999999999777766 7765441334567788889999999999999
Q ss_pred CCCCC
Q 041088 80 PLPLG 84 (119)
Q Consensus 80 ~~~~p 84 (119)
|.+.+
T Consensus 325 pfwp~ 329 (498)
T KOG0685|consen 325 PFWPS 329 (498)
T ss_pred CCCCC
Confidence 87644
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.31 E-value=0.0021 Score=51.50 Aligned_cols=78 Identities=13% Similarity=-0.024 Sum_probs=55.2
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCHHHHH-hhcCCCCC-HHHHHHhhcCCcc-ceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKGKCAN-RLLGSSGL-PQIARQMKRLELS-SIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa~qaa-~LL~~~~~-~~~a~~l~~i~~~-p~~~v~l~~~~ 79 (119)
++|+++++|++|..++++ +.+..++|....+|.||+++.++.+. +||+.... +.+...+++++++ +.+++++++++
T Consensus 244 ~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~ 323 (493)
T TIGR02730 244 GQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKA 323 (493)
T ss_pred CEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecC
Confidence 689999999999877653 66776666545689999998776665 57765321 3333444566655 58899999988
Q ss_pred CC
Q 041088 80 PL 81 (119)
Q Consensus 80 ~~ 81 (119)
..
T Consensus 324 ~~ 325 (493)
T TIGR02730 324 DV 325 (493)
T ss_pred cc
Confidence 54
No 28
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.30 E-value=0.0012 Score=52.83 Aligned_cols=76 Identities=17% Similarity=0.040 Sum_probs=54.1
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCHHHHHh-hcCCCCCH-HHHHHhhcCC-ccceEEEEEeecC
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKGKCANR-LLGSSGLP-QIARQMKRLE-LSSIWALLAAFED 79 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa~qaa~-LL~~~~~~-~~a~~l~~i~-~~p~~~v~l~~~~ 79 (119)
++|+++++|++|..++++ |.|...+|....+|.||+|++...+.. |++....+ ...+.+++++ ..++++++++++.
T Consensus 234 ~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~ 313 (502)
T TIGR02734 234 GELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLG 313 (502)
T ss_pred CEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeecc
Confidence 579999999999987765 677776664456999999999988875 55432211 2234455555 4467888999983
No 29
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.95 E-value=0.00099 Score=46.62 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=29.4
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
++++++++|+++++.+++|.|...++....+|.||+|+-.
T Consensus 97 l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 97 LEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp GGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred cccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 4589999999999999999999987744459999999873
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.028 Score=45.80 Aligned_cols=80 Identities=9% Similarity=-0.046 Sum_probs=61.3
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCHHHHHh----hcCCCCCHHHHHHhhcCCccceEEEEEee
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKGKCANR----LLGSSGLPQIARQMKRLELSSIWALLAAF 77 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa~qaa~----LL~~~~~~~~a~~l~~i~~~p~~~v~l~~ 77 (119)
.+.|+++.+|..|...+++ ..++..++....+|.||+|+|-..+.. +-+... ....+.+.++.+-++--+.|.|
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp-~~k~~aI~~lg~g~~~Kv~l~F 306 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP-RWKQEAIDRLGFGLVNKVILEF 306 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc-HHHHHHHHhcCCCceeEEEEEe
Confidence 4689999999999987766 344444443346899999999999866 223333 4566788999999999999999
Q ss_pred cCCCCC
Q 041088 78 EDPLPL 83 (119)
Q Consensus 78 ~~~~~~ 83 (119)
++..+.
T Consensus 307 ~~~fW~ 312 (501)
T KOG0029|consen 307 PRVFWD 312 (501)
T ss_pred ccccCC
Confidence 998874
No 31
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.16 E-value=0.021 Score=42.55 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred ceeEEcCceeEEEEecCCeEE-EEeCCccccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecC
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LSENVKLRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFED 79 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~ 79 (119)
-++|+.+++|++|..++++|+ |.+++|. ..+|.||+|+-++ +..|++... . .++..++...++.++.
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~-s~~l~~~~~-~-------~~~~~~~~~~~~~~~~ 228 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAW-SPQLLPLLG-L-------DLPLRPVRGQVLVLEP 228 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGG-HHHHHHTTT-T-------SSTEEEEEEEEEEEEG
T ss_pred hhhccccccccchhhcccccccccccccc-cccceeEeccccc-ceeeeeccc-c-------cccccccceEEEEEcc
Confidence 368999999999999999998 9998887 5689999998654 344555443 1 1155566666666654
No 32
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.04 E-value=0.013 Score=40.12 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=29.2
Q ss_pred cCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 8 RPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 8 ~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
...+|+.|.+.+++|.|...+|....||+||+|+-
T Consensus 120 ~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 120 VRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred EeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 35699999999999999887775557999999974
No 33
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.16 E-value=0.036 Score=43.48 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=31.2
Q ss_pred cceeEEcCceeEEE-EecCCe---EEEEeCC--c-cccccCEEEEcCCHHHHH
Q 041088 2 SMFSIVRPCWISNL-EPFNGM---WHLSENV--K-LRGQFDVVVIAHKGKCAN 47 (119)
Q Consensus 2 ~~~~i~~~~~V~~i-~~~~~~---w~l~~~~--g-~~~~~D~VIlA~Pa~qaa 47 (119)
|..++ ++++|++| .+.+++ |++.... + ....||.||+|+|-.+..
T Consensus 138 S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 138 SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 56678 89999999 444443 6665432 2 233589999999996654
No 34
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.16 E-value=0.038 Score=43.75 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=35.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++|+++++|.+|.+.+.+++|...+|....+|.+|+|+-
T Consensus 125 gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 125 GVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 5889999999999999999999998885557999999975
No 35
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.15 E-value=0.037 Score=43.90 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=29.2
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCHHHHHh
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKGKCANR 48 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa~qaa~ 48 (119)
.++|+++++|.+|+..+++ |.+..+++....+|.||+|+-.....+
T Consensus 123 gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPK 169 (409)
T ss_dssp T-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGG
T ss_pred CCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccc
Confidence 4789999999999998877 999884444446999999976544333
No 36
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.03 E-value=0.052 Score=41.94 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=35.1
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++++++++|.+|+.++++|.+.+++|....+|+||+|+-++.
T Consensus 149 ~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 149 LTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred cEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 678999999999998889999887775346899999987664
No 37
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=94.52 E-value=0.067 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=30.5
Q ss_pred EEcCceeEEEEecCCeEEEEeCC--cc--ccccCEEEEcCCH
Q 041088 6 IVRPCWISNLEPFNGMWHLSENV--KL--RGQFDVVVIAHKG 43 (119)
Q Consensus 6 i~~~~~V~~i~~~~~~w~l~~~~--g~--~~~~D~VIlA~Pa 43 (119)
|+++++|++|++.+++|.|...+ +. ...||+||+|+-.
T Consensus 130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 89999999999988899997642 21 2358999999874
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.32 E-value=0.78 Score=35.12 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=38.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH-HHhhcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC-ANRLLG 51 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q-aa~LL~ 51 (119)
.++++++++|++|..++++|.+...+|....+|.||.|..... ..+.+.
T Consensus 120 gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 5789999999999998889988876665557899999998653 444443
No 39
>PRK09897 hypothetical protein; Provisional
Probab=94.22 E-value=0.11 Score=42.63 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCC-ccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENV-KLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~-g~~~~~D~VIlA~Pa 43 (119)
.+.++.+++|+.|+..+++|.+..++ |....+|.||+|+-.
T Consensus 123 ~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 123 AVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred eEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 36788899999999999999998743 444568999999853
No 40
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.79 E-value=0.1 Score=42.80 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=28.7
Q ss_pred eEEcCceeEEEEecC-----CeEEEEeC-Cc--cccccCEEEEcCC
Q 041088 5 SIVRPCWISNLEPFN-----GMWHLSEN-VK--LRGQFDVVVIAHK 42 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~-----~~w~l~~~-~g--~~~~~D~VIlA~P 42 (119)
.|++||+|.++++.+ ++|.|..+ +| ....||+||+|+-
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 589999999999864 46999864 33 2335999999964
No 41
>PRK07588 hypothetical protein; Provisional
Probab=93.25 E-value=0.21 Score=38.61 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=35.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++|+++++|++|+..+++|.+.+.+|....+|.||-|.-..
T Consensus 116 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 116 QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 368999999999999999999988777555789999987643
No 42
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.16 E-value=0.19 Score=41.96 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=35.1
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++++++++|++|+..+++|.|.+++|....+|.||+|+-++.
T Consensus 422 v~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 422 LTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 678899999999998889999887765445899999987654
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.85 E-value=0.27 Score=38.36 Aligned_cols=43 Identities=12% Similarity=-0.151 Sum_probs=35.4
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
..++++++|++|+..+++|.+...+|....+|.||.|.-....
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4578999999999988999998877755678999999865544
No 44
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.84 E-value=0.2 Score=38.21 Aligned_cols=42 Identities=5% Similarity=-0.126 Sum_probs=34.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|++|...+++|.+.+++|. ..+|.||+|+.++.
T Consensus 163 gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~~a~~vV~A~G~~~ 204 (376)
T PRK11259 163 GAELLFNEPVTAIEADGDGVTVTTADGT-YEAKKLVVSAGAWV 204 (376)
T ss_pred CCEEECCCEEEEEEeeCCeEEEEeCCCE-EEeeEEEEecCcch
Confidence 4678999999999998888998887774 46899999998653
No 45
>PRK06847 hypothetical protein; Provisional
Probab=92.75 E-value=0.28 Score=37.51 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=35.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++|+++++|++++..++++.+...+|....+|.||.|+-...
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 3679999999999988888988876665557999999986543
No 46
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.60 E-value=0.25 Score=36.18 Aligned_cols=40 Identities=10% Similarity=0.000 Sum_probs=31.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.+++++ ++|++|+..+++|.+...++....+|.||+|+-.
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 356777 8999999988889988766655579999999854
No 47
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.19 E-value=0.42 Score=37.06 Aligned_cols=41 Identities=5% Similarity=-0.201 Sum_probs=33.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.+++..+++|.+..++|. ..+|.||+|+.++
T Consensus 163 Gv~i~~~~~V~~i~~~~~~~~V~~~~g~-i~ad~vV~A~G~~ 203 (393)
T PRK11728 163 GGEIRLGAEVTALDEHANGVVVRTTQGE-YEARTLINCAGLM 203 (393)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCE-EEeCEEEECCCcc
Confidence 3678999999999988888988876664 4689999998865
No 48
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.18 E-value=0.2 Score=38.79 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=28.4
Q ss_pred eeEEcCceeEEEEecC-CeEEEEeCC----c-cccccCEEEEcC
Q 041088 4 FSIVRPCWISNLEPFN-GMWHLSENV----K-LRGQFDVVVIAH 41 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~-~~w~l~~~~----g-~~~~~D~VIlA~ 41 (119)
+.++.+++|++++..+ ++|+|...+ + ....+|.||+||
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilAT 337 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILAT 337 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE--
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcC
Confidence 5788999999999988 489987632 2 344699999998
No 49
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.86 E-value=0.49 Score=38.56 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=33.7
Q ss_pred eeEEcCceeEEEEec-CCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPF-NGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~-~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++|+++++|++|++. ++.|.|.+++|. ..+|.||+|+-++.
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G~-i~A~~VVvaAG~~S 273 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYS 273 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCCE-EEeCEEEECcChhH
Confidence 678999999999987 556899887774 46899999997664
No 50
>PRK07236 hypothetical protein; Provisional
Probab=91.67 E-value=0.43 Score=36.91 Aligned_cols=38 Identities=13% Similarity=-0.157 Sum_probs=32.7
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~ 41 (119)
.+|+++++|++|+..++++.+...+|....+|.||.|-
T Consensus 113 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgAD 150 (386)
T PRK07236 113 ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGAD 150 (386)
T ss_pred cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECC
Confidence 46999999999999888999988777556799999994
No 51
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.53 E-value=0.46 Score=36.52 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=34.3
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|+++...+++|.+...+|....+|.||.|.-..
T Consensus 127 g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 127 GVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 467899999999998888999987666445689999997543
No 52
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=91.51 E-value=0.38 Score=37.91 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=33.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc-cccccCEEEEcCCHHHHHhh
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK-LRGQFDVVVIAHKGKCANRL 49 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g-~~~~~D~VIlA~Pa~qaa~L 49 (119)
.++|+++++|.+| .+++|.+....+ ....+|+||+|+-......+
T Consensus 100 gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 100 GVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 5889999999999 345688876432 33469999999976555444
No 53
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.37 E-value=0.46 Score=36.33 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=33.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++.+++|.+|+.++++|.+..+++. ..+|.||+|+-++
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~v~~~~~~-i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVTVKTTKGS-YQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeEEEEeCCCE-EEeCEEEEecCcc
Confidence 3578899999999988888988876663 4589999998764
No 54
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.21 E-value=0.48 Score=36.10 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=33.5
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
++|+++++|+++...+++|.+...+|....+|.||.|.-.
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGA 161 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCC
Confidence 7899999999999988899888776755578999998654
No 55
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.83 E-value=0.57 Score=36.35 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH-HHHHhhcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG-KCANRLLG 51 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa-~qaa~LL~ 51 (119)
.++++++++|.+++.++++|.+...+|....+|.||.|.-. ....+++.
T Consensus 126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 46789999999999999999998776654578999999854 34455543
No 56
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.81 E-value=0.55 Score=36.27 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=33.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.++...+++|.+...+|....+|.||+|+.
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcC
Confidence 4678999999999988778888877675567999999964
No 57
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=90.71 E-value=0.76 Score=34.28 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=33.8
Q ss_pred ceeEEcCceeEEEEecCCeEE-EEeCCccccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
.++++.+++|++|...+++|. |..++|. ..+|.||+|+-++..
T Consensus 151 g~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIRGEKVTAIVTPSGD-VQADQVVLAAGAWAG 194 (337)
T ss_pred CCEEEccceEEEEEeeCCEEEEEEcCCCE-EECCEEEEcCChhhh
Confidence 367899999999998888764 6666663 458999999987654
No 58
>PRK06753 hypothetical protein; Provisional
Probab=90.70 E-value=0.61 Score=35.65 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=33.6
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.+|+++++|++|+.+++++.+...+|....+|.||-|.-.
T Consensus 111 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~ 150 (373)
T PRK06753 111 DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGI 150 (373)
T ss_pred ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCc
Confidence 4689999999999888899998877755578999999763
No 59
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.64 E-value=0.63 Score=35.94 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=34.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|++++.+++++.+..++|....+|.||.|.-.
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~ 167 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGA 167 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCC
Confidence 46899999999999988899988766655568999999854
No 60
>PRK09126 hypothetical protein; Provisional
Probab=90.59 E-value=0.63 Score=35.81 Aligned_cols=42 Identities=7% Similarity=-0.044 Sum_probs=34.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++|+++++|++++..++++.+...+|....+|.||.|.-..
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 478999999999998888888887666555789999998743
No 61
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.58 E-value=0.66 Score=35.78 Aligned_cols=48 Identities=8% Similarity=-0.025 Sum_probs=36.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH-HHHHhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG-KCANRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa-~qaa~LL 50 (119)
.++++++++|++++.+++++.+...+|....+|.||.|.-. ....+.+
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 46899999999999989999888766655568999999854 3344443
No 62
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=90.53 E-value=0.65 Score=35.77 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH-HHhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC-ANRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q-aa~LL 50 (119)
.++++++++|+++...+++|.+..++|....+|.||.|.-... ..+.+
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 5678999999999988889999876665556899999986443 33443
No 63
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.85 E-value=0.79 Score=37.19 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|..|.+.++.|.+...+|....+|.||+|+-+
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA 320 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC
Confidence 36788999999999988889988766655569999999864
No 64
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.68 E-value=0.77 Score=35.51 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=35.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|++++.+++++.+...+|....+|.||.|.-...
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 4789999999999998889988887775567899999986443
No 65
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=89.66 E-value=1 Score=36.13 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=37.3
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccc-cccCEEEEcCC--HHHHHhhcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLR-GQFDVVVIAHK--GKCANRLLGS 52 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~-~~~D~VIlA~P--a~qaa~LL~~ 52 (119)
.+++++|++|+.|++.+++ +.+.+.+|.. ..++.||.+.. +...+++..-
T Consensus 167 g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~ 220 (429)
T COG0579 167 GVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGI 220 (429)
T ss_pred CCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCC
Confidence 5789999999999999985 5666666643 56899999986 4555665544
No 66
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=89.52 E-value=0.83 Score=35.42 Aligned_cols=42 Identities=12% Similarity=-0.079 Sum_probs=32.7
Q ss_pred ceeEEcCceeEEEEecCCeEE-EEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++|+++++|++|+.++++|. +..+++. ..+|.||+|+.++.
T Consensus 215 G~~i~~~~~V~~i~~~~~~~~~v~t~~~~-~~a~~VV~a~G~~~ 257 (416)
T PRK00711 215 GVKFRFNTPVDGLLVEGGRITGVQTGGGV-ITADAYVVALGSYS 257 (416)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEEeCCcE-EeCCEEEECCCcch
Confidence 367889999999998888764 6666553 45899999998754
No 67
>PRK08163 salicylate hydroxylase; Provisional
Probab=89.47 E-value=0.85 Score=35.15 Aligned_cols=42 Identities=10% Similarity=-0.025 Sum_probs=34.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.++..+++++.+...+|....+|.||.|.-..
T Consensus 124 ~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 124 LVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred CcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcC
Confidence 367899999999998888898887666555689999997543
No 68
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.47 E-value=0.84 Score=37.03 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|.+|...++.|.+...+|....+|.||+|+-+
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa 321 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA 321 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 36788999999999888888888766655579999999865
No 69
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.46 E-value=0.8 Score=37.38 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=33.0
Q ss_pred ceeEEcCceeEEEEec-CCeEEEE---eCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGMWHLS---ENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~w~l~---~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++++++++|..|++. +++|++. .+++. ...+|.||+|+-++.
T Consensus 199 Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 199 NAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 4789999999999988 7789886 33331 346999999987655
No 70
>PRK05868 hypothetical protein; Validated
Probab=89.22 E-value=0.94 Score=35.09 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=33.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|++++.++++..+...+|....+|.||-|.-
T Consensus 118 ~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 118 SVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 4679999999999988888888887775557999999975
No 71
>PRK06116 glutathione reductase; Validated
Probab=89.06 E-value=0.9 Score=35.98 Aligned_cols=39 Identities=10% Similarity=-0.088 Sum_probs=30.9
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~ 41 (119)
.++++++++|.+|+.++++ +.+...+|....+|.||+++
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~ 261 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAI 261 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEee
Confidence 4789999999999887655 67776666555799999996
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.97 E-value=0.96 Score=35.15 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=31.5
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCC-----ccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENV-----KLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~-----g~~~~~D~VIlA~Pa~q 45 (119)
++++.+++|.+|+..+++|.+...+ +....+|.||+|+-++.
T Consensus 212 ~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 212 VQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred CEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 5788999999999888888765322 12346899999997653
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.51 E-value=9.6 Score=30.97 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.2
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCC---c--cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENV---K--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~---g--~~~~~D~VIlA~Pa~q 45 (119)
+++..+++|.+|..++++|.+...+ | ....++.||.|+-++.
T Consensus 170 a~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 170 AEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred CEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 5788999999999888888876432 3 2346899999998743
No 74
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=88.40 E-value=1.1 Score=35.13 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=34.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCAN 47 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa 47 (119)
.++++++++|.+|...++.|.+..+++. ..+|.||+|+......
T Consensus 119 gv~i~~~~~V~~i~~~~~~~~v~~~~~~-i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 119 GVEILTNSKVKSIKKDDNGFGVETSGGE-YEADKVILATGGLSYP 162 (400)
T ss_pred CCEEEeCCEEEEEEecCCeEEEEECCcE-EEcCEEEECCCCcccC
Confidence 4689999999999888888988775443 4589999999875543
No 75
>PRK07846 mycothione reductase; Reviewed
Probab=87.91 E-value=1.4 Score=35.21 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=31.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|++++..+++..+...+|....+|.||+|+.
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G 259 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATG 259 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEEC
Confidence 3678999999999887777777665565567999999975
No 76
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=87.65 E-value=1.1 Score=35.63 Aligned_cols=39 Identities=18% Similarity=0.009 Sum_probs=31.3
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
++|+.+++|.+|+. ++.|.|.+++|.. .+|+||+|+-++
T Consensus 198 v~i~~~t~V~~i~~-~~~~~v~t~~g~v-~A~~VV~Atga~ 236 (460)
T TIGR03329 198 VEIHENTPMTGLEE-GQPAVVRTPDGQV-TADKVVLALNAW 236 (460)
T ss_pred CEEECCCeEEEEee-CCceEEEeCCcEE-ECCEEEEccccc
Confidence 67899999999975 5568888777743 589999998765
No 77
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.35 E-value=1.3 Score=35.03 Aligned_cols=40 Identities=10% Similarity=-0.063 Sum_probs=32.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|++++..++++.+...+|....+|.||+|+.
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 269 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANG 269 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeec
Confidence 4688999999999887778877765554456999999975
No 78
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=87.24 E-value=1.5 Score=34.98 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=32.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++.+++++.+...+|....+|.||+++.
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G 262 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATG 262 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeec
Confidence 3679999999999887777777665554557999999985
No 79
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=87.00 E-value=1.5 Score=34.08 Aligned_cols=48 Identities=13% Similarity=0.024 Sum_probs=37.3
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH-HHHHhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG-KCANRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa-~qaa~LL 50 (119)
.++++++++|++++..++++.+...+|....+|.||.|.-. ....+.+
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 47899999999999888888888776755578999999864 3344444
No 80
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=86.99 E-value=1.4 Score=34.84 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=31.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc--cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK--LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g--~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+..++++.+...+| ....+|.||+|+.
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G 266 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVG 266 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecC
Confidence 368999999999988878877765444 3457999999974
No 81
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=86.98 E-value=1.6 Score=34.67 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=31.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.++...+++..+...+|....+|.||+|+.
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G 260 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATG 260 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeC
Confidence 4789999999999887777777665555557999999965
No 82
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.81 E-value=1.2 Score=35.30 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=30.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc---cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK---LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g---~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+..++++.+...++ ....+|.||+|+.
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G 269 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG 269 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC
Confidence 478999999999998777777764322 3456999999964
No 83
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=86.55 E-value=1.6 Score=34.87 Aligned_cols=40 Identities=5% Similarity=-0.082 Sum_probs=31.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++..++++.+...+|....+|.||+++.
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G 271 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG 271 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec
Confidence 4688999999999877777777665565557999999964
No 84
>PRK06834 hypothetical protein; Provisional
Probab=86.21 E-value=1.7 Score=35.13 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=34.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++|+++++|++++.+++++.+...+|....+|.||.|.-..
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 368999999999999999998887666445689999997543
No 85
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=86.16 E-value=1.6 Score=35.51 Aligned_cols=39 Identities=15% Similarity=-0.042 Sum_probs=31.2
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~P 42 (119)
++|+++++|+.|...++. ..+...+|....+|+||+|.-
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 689999999999988874 456666675667999999964
No 86
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=86.09 E-value=1.9 Score=33.86 Aligned_cols=41 Identities=5% Similarity=0.027 Sum_probs=30.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCC-ccccc--cCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENV-KLRGQ--FDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~-g~~~~--~D~VIlA~Pa 43 (119)
.++++++++|++|...++.+.+...+ +.... ||.||+||-+
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 45678899999998887777776532 33334 9999999853
No 87
>PLN02507 glutathione reductase
Probab=86.00 E-value=1.8 Score=35.05 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=32.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++..+++..+...+|....+|.||+++.
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G 297 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG 297 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec
Confidence 4789999999999887777777766665567999999964
No 88
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=85.94 E-value=1.7 Score=33.47 Aligned_cols=38 Identities=11% Similarity=-0.153 Sum_probs=31.8
Q ss_pred EcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 7 VRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 7 ~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
+++++|++++..+++|.+..++|....+|.||.|.-..
T Consensus 129 ~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 129 RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCC
Confidence 78999999999999999988767555789999998654
No 89
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=85.37 E-value=2.4 Score=34.54 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.7
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeC----Cc-cccccCEEEEcCCHHHHHhhcCCCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSEN----VK-LRGQFDVVVIAHKGKCANRLLGSSG 54 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~----~g-~~~~~D~VIlA~Pa~qaa~LL~~~~ 54 (119)
.++++++++|+.|++.+++ |.|... ++ ....++-|++-.-.. +..||....
T Consensus 196 ~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksg 252 (488)
T PF06039_consen 196 GFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSG 252 (488)
T ss_pred CcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcC
Confidence 6789999999999998877 998752 22 344689999988776 445555443
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.05 E-value=1.7 Score=26.00 Aligned_cols=27 Identities=4% Similarity=-0.115 Sum_probs=22.4
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK 29 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g 29 (119)
.+++++++.|.+|+.+++++++...+|
T Consensus 54 gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 589999999999999988866766554
No 91
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=85.04 E-value=1.8 Score=34.65 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=29.5
Q ss_pred eeEEcCceeEEEEecC--CeEEEEeCCccc--cccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFN--GMWHLSENVKLR--GQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~--~~w~l~~~~g~~--~~~D~VIlA~Pa 43 (119)
.+|.++++|+.+.++. +.|.|+.++|.. ..+|.||+|+-.
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 4677788887777654 479999876643 349999999754
No 92
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=85.03 E-value=2 Score=32.88 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=32.2
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
++++ +++|+++...++++.+...+|....+|.||.|.-..
T Consensus 127 v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 127 LTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred cEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 6677 999999998888999888666445689999998653
No 93
>PRK11445 putative oxidoreductase; Provisional
Probab=84.89 E-value=2.4 Score=32.43 Aligned_cols=42 Identities=7% Similarity=-0.082 Sum_probs=33.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe-CCcc--ccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE-NVKL--RGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~-~~g~--~~~~D~VIlA~Pa~ 44 (119)
.++++++++|..++..+++|.+.. ++|. ...+|.||.|.-..
T Consensus 112 gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 112 SVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 468999999999999889998875 4442 45689999998643
No 94
>PRK08013 oxidoreductase; Provisional
Probab=84.86 E-value=2 Score=33.38 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=35.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|++++.+++++.+...+|....+|-||-|.-...
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 5789999999999988888888876665557899999976443
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=84.66 E-value=2 Score=34.96 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=31.3
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeC---Ccc--ccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSEN---VKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~---~g~--~~~~D~VIlA~Pa~q 45 (119)
++|+++++|++|++.+++ |.+... .|. ...++.||+++-++.
T Consensus 199 v~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 199 FELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred eEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 689999999999986654 987642 232 346899999987654
No 96
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.54 E-value=2.3 Score=33.10 Aligned_cols=40 Identities=18% Similarity=-0.037 Sum_probs=30.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|.++.. ++.+.+...+|....+|.||+++..
T Consensus 200 GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 200 GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 468999999999976 5566676666655579999998753
No 97
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=84.20 E-value=2.5 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.002 Sum_probs=38.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC-CccccccCEEEEcCCHHHH-HhhcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN-VKLRGQFDVVVIAHKGKCA-NRLLG 51 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~-~g~~~~~D~VIlA~Pa~qa-a~LL~ 51 (119)
++++++++.|+.++.+++++.+..+ +|....+|-||-|--.... .+.+.
T Consensus 119 ~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 119 NVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred CcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 4799999999999999998888776 7766679999999764433 34433
No 98
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=84.06 E-value=2.8 Score=30.95 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=36.9
Q ss_pred cceeEEcCceeEEEEec--CCe-EEE--EeCCcc----ccccCEEEEcCCHHHHHhhcCCCC
Q 041088 2 SMFSIVRPCWISNLEPF--NGM-WHL--SENVKL----RGQFDVVVIAHKGKCANRLLGSSG 54 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~--~~~-w~l--~~~~g~----~~~~D~VIlA~Pa~qaa~LL~~~~ 54 (119)
.+++|+++++|++|... +++ ..| ...++. ...++.||||.-+-.+.+||-.+.
T Consensus 206 ~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SG 267 (296)
T PF00732_consen 206 PNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSG 267 (296)
T ss_dssp TTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTT
T ss_pred CCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccc
Confidence 47999999999999664 333 233 333332 234799999999999999986554
No 99
>PRK07190 hypothetical protein; Provisional
Probab=83.81 E-value=2.5 Score=34.16 Aligned_cols=43 Identities=16% Similarity=-0.027 Sum_probs=34.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++|+++++|++|+.+++++.+...+|....++.||.|.-...
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4789999999999999888887765554556899999987544
No 100
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=83.72 E-value=2.8 Score=32.33 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=33.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
+++++++++|+++..+++++.+..+++ ...+|.||.|.-..
T Consensus 119 ~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 119 LITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCC
Confidence 467899999999999889999888766 45689999997544
No 101
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=83.64 E-value=2.7 Score=33.08 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=30.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC-Cccccc--cCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN-VKLRGQ--FDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~-~g~~~~--~D~VIlA~Pa 43 (119)
.++++++++|.+|..+++.+.+... ++.... ||.||+|+-+
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence 4678889999999988888777642 233334 9999999854
No 102
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.56 E-value=22 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=32.4
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCc----cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVK----LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g----~~~~~D~VIlA~Pa~q 45 (119)
+++..+++|.+|.++++.|.+...++ ....++.||.|+-++.
T Consensus 170 a~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 170 ATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 57889999999999888888865332 2346899999998653
No 103
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=83.05 E-value=3.1 Score=30.21 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=32.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCC-ccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENV-KLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~-g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|..+...++++.+...+ +....+|.||.|+-...
T Consensus 105 gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 105 GAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 36789999999999888887665433 23456899999997643
No 104
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.81 E-value=1.8 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.4
Q ss_pred eEEcCceeEEEEecC-CeEEEEeCCc----cccccCEEEEcCCHH
Q 041088 5 SIVRPCWISNLEPFN-GMWHLSENVK----LRGQFDVVVIAHKGK 44 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~-~~w~l~~~~g----~~~~~D~VIlA~Pa~ 44 (119)
.|++++.|..+...+ +.|++...++ ....||.||+++-.+
T Consensus 108 ~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 108 MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 589999999999888 7999976332 234599999998665
No 105
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=82.67 E-value=4.2 Score=33.66 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=37.0
Q ss_pred cceeEEcCceeEEEEecCC---eE---EEEe-CCc--cccccCEEEEcCCHHHHHhhcCC
Q 041088 2 SMFSIVRPCWISNLEPFNG---MW---HLSE-NVK--LRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~---~w---~l~~-~~g--~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
.+++|++++.|.+|..+++ +. .+.. ++| ....++.||||+-+-+..+||-.
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 4689999999999987643 22 2222 123 33568999999999999999844
No 106
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.55 E-value=3 Score=32.31 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=32.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--Cc-cccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--VK-LRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~g-~~~~~D~VIlA~Pa 43 (119)
.++++++++|++++.+++++.+... ++ ....+|.||.|.-.
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA 179 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC
Confidence 5788999999999988888888764 22 24578999999753
No 107
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=82.53 E-value=3.1 Score=33.42 Aligned_cols=38 Identities=3% Similarity=-0.160 Sum_probs=29.3
Q ss_pred eeEEcCceeEEEEecCCe--EEEEeCCccccccCEEEEcC
Q 041088 4 FSIVRPCWISNLEPFNGM--WHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~--w~l~~~~g~~~~~D~VIlA~ 41 (119)
..++++++|.+|..++++ +.+...+|....++.||+..
T Consensus 247 g~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 247 GTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred cEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 469999999999887654 66777667555689998853
No 108
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=81.98 E-value=3.2 Score=32.74 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=30.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~ 41 (119)
.++++++++|.+|+.+++++.+..+++. ..+|.||+|+
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~ 250 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHAQ-LAVDALLIAS 250 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEee
Confidence 4789999999999887777777665554 3589999995
No 109
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=81.91 E-value=2.4 Score=36.43 Aligned_cols=39 Identities=5% Similarity=0.050 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|+.|.+.+ +.+...+|....||.||+||-+
T Consensus 68 gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs 106 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGS 106 (785)
T ss_pred CCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCC
Confidence 57899999999998765 3455555655579999999854
No 110
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.62 E-value=3.3 Score=32.23 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=28.3
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.+++++++.|..|.+.+.. +...+|....||+||+||-+
T Consensus 72 ~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs 110 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGA 110 (396)
T ss_pred CCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCC
Confidence 5788999999999876543 44444544569999999853
No 111
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.18 E-value=3.5 Score=33.33 Aligned_cols=47 Identities=19% Similarity=-0.005 Sum_probs=34.5
Q ss_pred eeEEcCceeEEEEecCC-eEEEEeCCccccccCEEEEcCCHHHHHhhc
Q 041088 4 FSIVRPCWISNLEPFNG-MWHLSENVKLRGQFDVVVIAHKGKCANRLL 50 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~-~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL 50 (119)
++|+++++|++|..+++ +..+...+|....+|.||.+.-......|+
T Consensus 239 g~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~ 286 (487)
T COG1233 239 GEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLL 286 (487)
T ss_pred CEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhh
Confidence 78999999999998776 466766555444689999998763333333
No 112
>PRK14727 putative mercuric reductase; Provisional
Probab=80.91 E-value=4.1 Score=32.68 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=32.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.+++..++++.+..+++. ..+|.||+|+...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~~ 282 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGRH 282 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCCC
Confidence 3689999999999887778877766554 4589999998643
No 113
>PRK14694 putative mercuric reductase; Provisional
Probab=80.66 E-value=3.9 Score=32.64 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=30.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+.+++.+.+..+++. ..+|.||+|+.
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G 270 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAGT-LRAEQLLVATG 270 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCCE-EEeCEEEEccC
Confidence 4689999999999887777777665554 56999999974
No 114
>PRK07045 putative monooxygenase; Reviewed
Probab=80.65 E-value=3.9 Score=31.51 Aligned_cols=43 Identities=14% Similarity=-0.073 Sum_probs=33.2
Q ss_pred ceeEEcCceeEEEEecCCe--EEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM--WHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~--w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|..|+..+++ +.+...+|....+|.||.|.-...
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 4689999999999987665 467776665556899999986443
No 115
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.58 E-value=3.9 Score=32.37 Aligned_cols=41 Identities=2% Similarity=0.029 Sum_probs=30.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCC-c-c-ccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENV-K-L-RGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~-g-~-~~~~D~VIlA~Pa 43 (119)
.++++++++|.+|..+++...+...+ + . ...||.||+|+-+
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC
Confidence 46788899999999988887776532 2 2 2468999999843
No 116
>PRK06475 salicylate hydroxylase; Provisional
Probab=80.57 E-value=3.9 Score=31.76 Aligned_cols=43 Identities=5% Similarity=-0.174 Sum_probs=32.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe---CCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE---NVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~---~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++++|++++..++++.+.. +++....+|.||-|.-...
T Consensus 122 ~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred CcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 367999999999998888887764 3334456899999976444
No 117
>PRK06184 hypothetical protein; Provisional
Probab=80.44 E-value=3.7 Score=33.02 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=35.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe---CCccccccCEEEEcCCHHHH-Hhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE---NVKLRGQFDVVVIAHKGKCA-NRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~---~~g~~~~~D~VIlA~Pa~qa-a~LL 50 (119)
.++|+++++|.+|+.+++++.+.. +++....+|.||.|.-+... .+.|
T Consensus 123 gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 123 GHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred CCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 468999999999998888887765 44445568999999865543 3444
No 118
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=80.38 E-value=1.9 Score=33.35 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=26.1
Q ss_pred EEcCceeEEEEecCC----eEEEEeC----CccccccCEEEEcCC
Q 041088 6 IVRPCWISNLEPFNG----MWHLSEN----VKLRGQFDVVVIAHK 42 (119)
Q Consensus 6 i~~~~~V~~i~~~~~----~w~l~~~----~g~~~~~D~VIlA~P 42 (119)
++++++|++|++.++ .|+|... ++....+++||+++.
T Consensus 112 v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 112 VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 889999999998764 4998762 234456899999974
No 119
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=80.33 E-value=3.4 Score=33.11 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=35.3
Q ss_pred eeEEcCceeEEEEecCCeEE-EEeCCc--cccccCEEEEcCCHHHHHhhcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWH-LSENVK--LRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~-l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
+.+..+++|.++...++++. +...++ ....+|+||+|+-++-...|+..
T Consensus 278 g~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 278 GVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred CEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 46888899999998888765 443433 24469999999887755555444
No 120
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=80.25 E-value=4.3 Score=32.12 Aligned_cols=41 Identities=15% Similarity=-0.032 Sum_probs=29.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++|+.+++|+++..+++++.....+|....+|.||.|+-.
T Consensus 122 Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 122 GAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGV 162 (428)
T ss_pred CCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCC
Confidence 36799999999998877776433333333468999999854
No 121
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=80.10 E-value=3.7 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=30.8
Q ss_pred ceeEEcCceeEEEEecC-CeEEEEe---CCc--cccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFN-GMWHLSE---NVK--LRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~w~l~~---~~g--~~~~~D~VIlA~Pa~ 44 (119)
.++|+++++|++|++.+ ++|.+.. ++| ....+|.||+|+-++
T Consensus 192 Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 192 GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 36899999999999865 4688753 223 234689999998754
No 122
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=79.16 E-value=5.4 Score=32.44 Aligned_cols=51 Identities=6% Similarity=0.052 Sum_probs=35.9
Q ss_pred cceeEEcCceeEEEEecCCeE-EEE--eCCc--cccccCEEEEcCCHHHHHhhcCC
Q 041088 2 SMFSIVRPCWISNLEPFNGMW-HLS--ENVK--LRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~~w-~l~--~~~g--~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
.+++|+++++|.+|..++++. .|. ..++ ....++.||++.-+-.+.+||--
T Consensus 207 ~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 207 PNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred CCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 478999999999999876542 232 2322 12358999999988777777653
No 123
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=78.83 E-value=5 Score=31.65 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=29.4
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~ 41 (119)
.++++++++|.+|..++++..+..+++ ...+|.||+|+
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~~g~-~i~~D~viva~ 249 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVTEDE-TYRFDALLYAT 249 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEECCe-EEEcCEEEEee
Confidence 468899999999988776766665443 45699999985
No 124
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=78.55 E-value=5.1 Score=31.90 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=29.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc-cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK-LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g-~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+..++.+.+..+++ ....+|.||+|+.
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G 265 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVG 265 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecC
Confidence 478999999999987766666654433 2456999999975
No 125
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.68 E-value=3.7 Score=33.00 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=31.4
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeC----Cc-cccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSEN----VK-LRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~----~g-~~~~~D~VIlA~Pa~ 44 (119)
.+.++.++.|.+++..++| ++|... ++ .....|+||+||--.
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3567888999999998877 887642 22 344689999999654
No 126
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=77.64 E-value=4.9 Score=32.20 Aligned_cols=40 Identities=8% Similarity=-0.064 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--Cc--cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--VK--LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~g--~~~~~D~VIlA~P 42 (119)
.++|+++++|.+|+..+++..+... +| ....+|.||+++.
T Consensus 238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G 281 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIG 281 (475)
T ss_pred CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccC
Confidence 4789999999999887776655432 12 3457999999975
No 127
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=77.45 E-value=5.2 Score=30.83 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=27.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|++|...+. .+..+++ ...||.||+||-+
T Consensus 72 gv~~~~~~~V~~id~~~~--~v~~~~~-~~~yd~LVlATG~ 109 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQ--VVKSQGN-QWQYDKLVLATGA 109 (377)
T ss_pred CCEEECCCEEEEEECCCC--EEEECCe-EEeCCEEEECCCC
Confidence 467888999999987654 4444443 4469999999753
No 128
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.40 E-value=5.1 Score=31.93 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--Cc--cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--VK--LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~g--~~~~~D~VIlA~P 42 (119)
.++|+++++|++++..++++.+... +| ....+|.||+++-
T Consensus 227 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270 (466)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcC
Confidence 4789999999999877766655432 34 3457999999963
No 129
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=77.23 E-value=4.7 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=25.3
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
++++.+ +|++|...++. |..++|....||.||+|+-
T Consensus 69 v~~~~~-~v~~id~~~~~--V~~~~g~~~~yD~LviAtG 104 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRK--VLLANRPPLSYDVLSLDVG 104 (364)
T ss_pred CEEEEE-EEEEEecccCE--EEECCCCcccccEEEEccC
Confidence 556554 78888877664 5555554557999999974
No 130
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=77.04 E-value=5.5 Score=33.83 Aligned_cols=41 Identities=15% Similarity=-0.061 Sum_probs=33.1
Q ss_pred eEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++++|++|+..++++.+...+|....+|.||.|.-...
T Consensus 208 ~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 208 VIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 36889999999998899998887775556899999976443
No 131
>PRK10015 oxidoreductase; Provisional
Probab=76.96 E-value=6.2 Score=31.32 Aligned_cols=41 Identities=10% Similarity=-0.106 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|+.|...++++.....++....+|.||+|.-.
T Consensus 122 Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 122 GAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred CCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCc
Confidence 36789999999998877777533223334468999999754
No 132
>PRK13748 putative mercuric reductase; Provisional
Probab=76.95 E-value=5.8 Score=32.29 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=30.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+..++.+.+..+++. ..+|.||+|+.
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G 362 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATG 362 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCCe-EEeCEEEEccC
Confidence 3689999999999887777777765554 46899999974
No 133
>PRK06370 mercuric reductase; Validated
Probab=76.91 E-value=6 Score=31.45 Aligned_cols=40 Identities=8% Similarity=-0.183 Sum_probs=29.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe--C-CccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE--N-VKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~--~-~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+|+..+++..+.. . ++....+|.||+|+.
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G 268 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG 268 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC
Confidence 478999999999988776655432 2 234456999999985
No 134
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=75.96 E-value=6.2 Score=30.62 Aligned_cols=43 Identities=14% Similarity=-0.104 Sum_probs=35.1
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
..+.++++|++|+..++++.+...+|....++.||-|.+....
T Consensus 101 ~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 101 GVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 4578899999999999988888877755568999999884433
No 135
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=75.71 E-value=5.9 Score=31.49 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--C-ccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--V-KLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~-g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++.+++++.+... + +....+|.||+|+.
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G 263 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG 263 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC
Confidence 4789999999999887666655432 2 23456999999974
No 136
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=75.57 E-value=6.6 Score=31.27 Aligned_cols=40 Identities=8% Similarity=-0.128 Sum_probs=29.8
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCc-cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVK-LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g-~~~~~D~VIlA~P 42 (119)
.++++++++|.+++..+++ ..+...+| ....+|.||+++.
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G 262 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG 262 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC
Confidence 4789999999999876544 55655555 4457999999974
No 137
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=75.46 E-value=5.6 Score=32.37 Aligned_cols=48 Identities=10% Similarity=-0.111 Sum_probs=36.1
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--Cc--cccccCEEEEcCCHHHHH-hhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--VK--LRGQFDVVVIAHKGKCAN-RLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~g--~~~~~D~VIlA~Pa~qaa-~LL 50 (119)
.++|+++++|++|+.+++++.+... +| ....+|.||-|.-..... +.+
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 5789999999999999999887653 34 345689999998655443 444
No 138
>PTZ00052 thioredoxin reductase; Provisional
Probab=74.64 E-value=7.3 Score=31.55 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=30.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++..++...+...+|....+|.||+++.
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G 275 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATG 275 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeC
Confidence 3688999999999876666666655554456899999974
No 139
>PLN02463 lycopene beta cyclase
Probab=74.62 E-value=7.4 Score=31.30 Aligned_cols=39 Identities=8% Similarity=-0.120 Sum_probs=30.7
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
++++ .++|.+|+..++++.|..++|....+|.||.|+-.
T Consensus 129 V~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~ 167 (447)
T PLN02463 129 VQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGF 167 (447)
T ss_pred CEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCC
Confidence 4454 57899999988889998877755578999999843
No 140
>PRK06996 hypothetical protein; Provisional
Probab=74.55 E-value=6.6 Score=30.50 Aligned_cols=47 Identities=9% Similarity=-0.135 Sum_probs=35.0
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCc---cccccCEEEEcCCH--HHHHhhc
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVK---LRGQFDVVVIAHKG--KCANRLL 50 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g---~~~~~D~VIlA~Pa--~qaa~LL 50 (119)
+.++++++|++++.++++|++...++ ....+|.||-|.-. ....+++
T Consensus 130 ~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 130 VRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred CEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 67899999999999999999886532 35578999999653 3334544
No 141
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=74.49 E-value=5.6 Score=31.27 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=29.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|.+|..+++.+.+..+++. ..+|.||+++..
T Consensus 205 gI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~d~vi~a~G~ 244 (444)
T PRK09564 205 GVELHLNEFVKSLIGEDKVEGVVTDKGE-YEADVVIVATGV 244 (444)
T ss_pred CCEEEcCCEEEEEecCCcEEEEEeCCCE-EEcCEEEECcCC
Confidence 3688999999999765444555555553 468999999764
No 142
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=73.72 E-value=7.6 Score=30.69 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=33.5
Q ss_pred ceeEEcCceeEEEEec-------CCeEEEEeCCccccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPF-------NGMWHLSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-------~~~w~l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
+++++++++|.+++.. ++++.+...+|....+|.||-|.-....
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 5899999999999753 4567887777755678999999754443
No 143
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=73.45 E-value=7.5 Score=30.57 Aligned_cols=43 Identities=14% Similarity=-0.090 Sum_probs=29.3
Q ss_pred ceeEEcCceeEEEEecCC----eEEEEeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNG----MWHLSENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~----~w~l~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++|+++++|++|..+++ ++.+...++. ...++.||+|+-...
T Consensus 144 gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 368999999999988643 2334433442 346899999986443
No 144
>PRK02106 choline dehydrogenase; Validated
Probab=73.28 E-value=6.1 Score=32.37 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=35.7
Q ss_pred cceeEEcCceeEEEEecCCeE-EEE--eCCc--cccccCEEEEcCCHHHHHhhcC
Q 041088 2 SMFSIVRPCWISNLEPFNGMW-HLS--ENVK--LRGQFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~~w-~l~--~~~g--~~~~~D~VIlA~Pa~qaa~LL~ 51 (119)
.+++|.+++.|.+|..++++. .|. ..++ ....++.||||+-+-...+||-
T Consensus 214 ~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl 268 (560)
T PRK02106 214 PNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQ 268 (560)
T ss_pred CCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence 468999999999998875532 222 2333 2335899999999888777764
No 145
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=72.46 E-value=5.4 Score=30.06 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=38.1
Q ss_pred EEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCCCCC
Q 041088 24 LSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLPLG 84 (119)
Q Consensus 24 l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~~~p 84 (119)
+..++. ....+|.||+|||.-.+|-=|.... |-+.-.+..+...|+....+- -+++-+|
T Consensus 154 v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGG-PIv~P~l~ai~ltpi~p~~l~-~Rpiv~p 214 (281)
T COG0061 154 VYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGG-PILHPGLDAIQLTPICPHSLS-FRPLVLP 214 (281)
T ss_pred EEECCEEEEEEecCEEEEEcCCcHHHHhhhcCC-CccCCCCCeEEEeecCCCccc-CCCEEEC
Confidence 444443 2335899999999887777676655 444445566777777777776 4454444
No 146
>PRK06175 L-aspartate oxidase; Provisional
Probab=72.05 E-value=9 Score=30.46 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEeCCcc-ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSENVKL-RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~~~g~-~~~~D~VIlA~Pa~q 45 (119)
.++|+++++|..|..++++ +.+..+++. ...++.||+|+-...
T Consensus 143 gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 143 NITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred CCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 5789999999999876654 222233332 346899999997643
No 147
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=71.49 E-value=9.6 Score=30.47 Aligned_cols=40 Identities=13% Similarity=-0.110 Sum_probs=29.4
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC---C--ccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN---V--KLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~---~--g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++..++++.+... + +....+|.||+++.
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 4789999999999877667665431 2 23456999999984
No 148
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=71.31 E-value=7.9 Score=33.72 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=28.9
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|.+|.++.. .|...+|....||.||+||-+
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs 111 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGS 111 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCC
Confidence 478899999999987543 455555644579999999854
No 149
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=71.16 E-value=8.8 Score=33.03 Aligned_cols=40 Identities=8% Similarity=-0.108 Sum_probs=30.4
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+|..++..-.+...+|....+|.||+++.
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCC
Confidence 3689999999999765544556666665567999999985
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=71.15 E-value=7.9 Score=29.43 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=30.3
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~ 51 (119)
-++++.+++|.+|+.. .+.+++|.. .+|+||+|+-++. ..|++
T Consensus 160 Gv~i~~~t~V~~i~~~----~v~t~~g~i-~a~~VV~A~G~~s-~~l~~ 202 (365)
T TIGR03364 160 GVEFHWNTAVTSVETG----TVRTSRGDV-HADQVFVCPGADF-ETLFP 202 (365)
T ss_pred CCEEEeCCeEEEEecC----eEEeCCCcE-EeCEEEECCCCCh-hhhCc
Confidence 3678899999999642 566665644 4899999998753 33443
No 151
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=70.97 E-value=9.1 Score=30.98 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=30.1
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCcc--ccccCEEEEcC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKL--RGQFDVVVIAH 41 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~--~~~~D~VIlA~ 41 (119)
++++++++|..++..+++..+..++|. ...+|.|++|+
T Consensus 229 v~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAi 268 (454)
T COG1249 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268 (454)
T ss_pred eEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEcc
Confidence 679999999999988877666665542 44689999997
No 152
>PRK10262 thioredoxin reductase; Provisional
Probab=70.59 E-value=10 Score=28.43 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=25.5
Q ss_pred EEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 6 IVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 6 i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
++.+ +|..|+..++.|++..+.+. ..||.||+|+-.
T Consensus 80 ~~~~-~v~~v~~~~~~~~v~~~~~~-~~~d~vilAtG~ 115 (321)
T PRK10262 80 IIFD-HINKVDLQNRPFRLTGDSGE-YTCDALIIATGA 115 (321)
T ss_pred EEee-EEEEEEecCCeEEEEecCCE-EEECEEEECCCC
Confidence 4443 56778887888988765443 358999999844
No 153
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=70.56 E-value=10 Score=30.74 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEeCCc--cccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSENVK--LRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~~~g--~~~~~D~VIlA~Pa~ 44 (119)
.++|+++++|++|..++++ +.+...++ ....++.||+|+-..
T Consensus 204 gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 204 KIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred CCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 3689999999999876654 44443443 245689999998643
No 154
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=70.40 E-value=10 Score=30.73 Aligned_cols=40 Identities=15% Similarity=-0.015 Sum_probs=28.8
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~P 42 (119)
.+++++++.|.+|...+++ ..+...+|....+|.||+++-
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G 285 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG 285 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC
Confidence 4689999999999876544 445544454456999999863
No 155
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.38 E-value=6.5 Score=30.82 Aligned_cols=40 Identities=15% Similarity=-0.083 Sum_probs=28.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.+|..++. . +...+|....+|.||++++..
T Consensus 193 gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCcc
Confidence 368899999999976543 3 333344445799999998754
No 156
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=70.31 E-value=9.7 Score=29.99 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=28.5
Q ss_pred ceeEEcCceeEEEEecC-CeEEE--EeC-CccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFN-GMWHL--SEN-VKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~w~l--~~~-~g~~~~~D~VIlA~Pa 43 (119)
.++|+++++|++|..++ +++.+ ... ++....++.||+|+-.
T Consensus 137 Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 137 GVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred CCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 36899999999998763 45443 222 2334468999999974
No 157
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=69.09 E-value=11 Score=30.18 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=29.4
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCC--c--cccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENV--K--LRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~--g--~~~~~D~VIlA~P 42 (119)
++++++++|++++..+++..+...+ + ....+|.||+++.
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G 271 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVG 271 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeec
Confidence 6899999999998877776665322 2 2356999999975
No 158
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=68.99 E-value=15 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=31.3
Q ss_pred eEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHH
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
.+..++.|..++..++.|.+.+.+|. ..+|+||+|+-++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 173 IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 46668888888874356888887776 468999999986644
No 159
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.72 E-value=9.5 Score=29.09 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=26.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++++|.++.. + .+...+|....+|.||++++.
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 478899999998853 2 344445545579999999863
No 160
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=66.74 E-value=17 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=29.8
Q ss_pred ceeEEcCceeEEEEec-CCeE-EEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGMW-HLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~w-~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.+++..+++|.+|... ++++ .+.+++|. ..++.||+++-++.
T Consensus 197 Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~-i~a~~vVvaagg~~ 240 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRRDGGRVIGVETTRGF-IGAKKVGVAVAGHS 240 (407)
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEeCCce-EECCEEEECCChhh
Confidence 3678889999999765 4554 57776664 35799988876544
No 161
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=66.72 E-value=11 Score=29.22 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=27.7
Q ss_pred eeEEcCceeEEEEecCCeE---EEE-eCCc--cccccCEEEEcCCHHHH
Q 041088 4 FSIVRPCWISNLEPFNGMW---HLS-ENVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w---~l~-~~~g--~~~~~D~VIlA~Pa~qa 46 (119)
++|+++++|++|..++++. .+. ..+| ....+++||+|+-....
T Consensus 156 v~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 156 VDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 7899999999999987753 223 1233 33468999999976654
No 162
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=66.68 E-value=14 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=29.5
Q ss_pred cceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCH
Q 041088 2 SMFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.+++|. ..+|+.|..+++. +.|.+.+|....+|.||+|+-.
T Consensus 109 ~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 457775 5789999887776 4577777766678999999976
No 163
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=66.59 E-value=12 Score=28.73 Aligned_cols=41 Identities=12% Similarity=-0.208 Sum_probs=30.9
Q ss_pred eeEEcCceeEEEEec-CCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPF-NGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~-~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++++ .++|..+... ++.|.+..++|....+|.||.|+....
T Consensus 100 v~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 100 VLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 3453 5678888877 667888887664456899999998775
No 164
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=66.17 E-value=15 Score=29.35 Aligned_cols=47 Identities=13% Similarity=-0.089 Sum_probs=33.2
Q ss_pred eeEEcCceeEEEEecCCeEEE-EeCCc--cccccCEEEEcCCHHHHHhhc
Q 041088 4 FSIVRPCWISNLEPFNGMWHL-SENVK--LRGQFDVVVIAHKGKCANRLL 50 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l-~~~~g--~~~~~D~VIlA~Pa~qaa~LL 50 (119)
++++++++|.+++..+++... ...+| ....+|.||+|+-......|.
T Consensus 274 v~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 274 GRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLV 323 (422)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCcee
Confidence 579999999999987776443 23222 335689999998876555553
No 165
>PRK06126 hypothetical protein; Provisional
Probab=65.40 E-value=11 Score=30.51 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=34.5
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe---CCc--cccccCEEEEcCCHHHH-Hhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE---NVK--LRGQFDVVVIAHKGKCA-NRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~---~~g--~~~~~D~VIlA~Pa~qa-a~LL 50 (119)
.++|+++++|++++.+++++.+.. .+| ....+|.||.|.-+... .+.|
T Consensus 141 ~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred CceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 578999999999999888876653 234 24468999999865443 3443
No 166
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=64.88 E-value=17 Score=29.82 Aligned_cols=42 Identities=14% Similarity=-0.170 Sum_probs=29.7
Q ss_pred eeEEcCceeEEEEecCCeE-EEEe---CCc--cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMW-HLSE---NVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w-~l~~---~~g--~~~~~D~VIlA~Pa~q 45 (119)
+++..+++|++|.++++++ .+.. .++ ....+|.||.|+-++.
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 5788999999999887754 2332 122 2446899999998653
No 167
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=64.85 E-value=16 Score=29.81 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=35.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe--CCcc-ccccCEEEEcCCHHH-HHhhcC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE--NVKL-RGQFDVVVIAHKGKC-ANRLLG 51 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~--~~g~-~~~~D~VIlA~Pa~q-aa~LL~ 51 (119)
.++|+++++|.+++.+++++.+.. .+|. ...+|.||.|.-... ..++|.
T Consensus 140 ~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 140 NIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred CcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 368999999999999888887654 2342 456899999986443 445554
No 168
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=64.76 E-value=14 Score=29.78 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=28.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCc---cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVK---LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g---~~~~~D~VIlA~P 42 (119)
.+++++++.+.++...+++..+...++ ....+|.||+++.
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIG 276 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEec
Confidence 478999999999987666655544322 2456999999974
No 169
>PRK06185 hypothetical protein; Provisional
Probab=64.71 E-value=17 Score=28.08 Aligned_cols=48 Identities=17% Similarity=0.019 Sum_probs=33.5
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCc-cccccCEEEEcCCHHH-HHhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVK-LRGQFDVVVIAHKGKC-ANRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g-~~~~~D~VIlA~Pa~q-aa~LL 50 (119)
.++++++++|.++..+++++ .+...+| ....+|.||.|.-... ..+++
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 47899999999998887765 2333445 3457899999986543 44444
No 170
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=63.72 E-value=16 Score=29.53 Aligned_cols=41 Identities=17% Similarity=-0.045 Sum_probs=29.5
Q ss_pred eeEEcCceeEEEEecCCeE-EEEe---CCc--cccccCEEEEcCCHH
Q 041088 4 FSIVRPCWISNLEPFNGMW-HLSE---NVK--LRGQFDVVVIAHKGK 44 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w-~l~~---~~g--~~~~~D~VIlA~Pa~ 44 (119)
++|..+++|++|.+.++++ .+.. .+| ....++.||.|+-++
T Consensus 143 a~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 143 ARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred CEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 5788999999999887764 3432 122 234689999999755
No 171
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=63.45 E-value=17 Score=30.08 Aligned_cols=43 Identities=19% Similarity=-0.028 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCcc-cccc-CEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVKL-RGQF-DVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g~-~~~~-D~VIlA~Pa~q 45 (119)
.++|+++++|++|..++++. .+..+++. ...+ +.||+|+-...
T Consensus 231 Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 231 GVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 36899999999998766653 23333442 3457 99999986554
No 172
>PRK07538 hypothetical protein; Provisional
Probab=61.11 E-value=17 Score=28.34 Aligned_cols=42 Identities=10% Similarity=-0.109 Sum_probs=29.6
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCC---c--cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENV---K--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~---g--~~~~~D~VIlA~Pa~q 45 (119)
..|+++++|++++..+++..+...+ | ....+|.||-|.-...
T Consensus 119 ~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 119 DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 3699999999999887765554321 2 3456899999975433
No 173
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=60.65 E-value=8.5 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=28.8
Q ss_pred ceeEEcCceeEEEEecCCe-----EEE---EeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGM-----WHL---SENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-----w~l---~~~~g~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.+|....+. +.+ ...++....||.||+|+-..
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 4567788999999887773 233 22334455799999998643
No 174
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=60.09 E-value=17 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=29.1
Q ss_pred eeEEcCceeEEEEecCCeEEEE--eC-Cc--cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLS--EN-VK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~--~~-~g--~~~~~D~VIlA~Pa~q 45 (119)
++|+++++|..++.+++++.+. .. +| ....+|.||-|.-...
T Consensus 126 v~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 126 VDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 6899999999999988876543 22 23 2456899999975433
No 175
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=59.97 E-value=18 Score=28.66 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=28.6
Q ss_pred ceeEEcCceeEEEEecCCeEE-EEe--CCc--cccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LSE--NVK--LRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~~--~~g--~~~~~D~VIlA~Pa 43 (119)
.++|+++++|++|..+++++. +.. .++ ....++.||+|+-.
T Consensus 145 gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 145 GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 368999999999988666543 332 222 23468999999864
No 176
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=59.54 E-value=18 Score=28.55 Aligned_cols=36 Identities=8% Similarity=-0.152 Sum_probs=26.3
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.++.. +. +..++|....+|.||+++.
T Consensus 242 gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 242 GVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred CCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccC
Confidence 478999999999864 33 4445555557999999864
No 177
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=59.53 E-value=15 Score=28.94 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=25.2
Q ss_pred CceeEEEEecCCeEEEEe--------CCccccccCEEEEcCCH
Q 041088 9 PCWISNLEPFNGMWHLSE--------NVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 9 ~~~V~~i~~~~~~w~l~~--------~~g~~~~~D~VIlA~Pa 43 (119)
..+|++|...++.+.+.. ++|....||.+|+|+-+
T Consensus 81 ~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs 123 (424)
T PTZ00318 81 RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA 123 (424)
T ss_pred EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc
Confidence 458899988888877732 23444579999999743
No 178
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=58.93 E-value=23 Score=30.94 Aligned_cols=40 Identities=5% Similarity=-0.163 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCC--eEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNG--MWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~--~w~l~~~~g~~~~~D~VIlA~P 42 (119)
-++|++++.|.+|...++ .-.+...+|....+|.||+|+.
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC
Confidence 368999999999976532 3345666665567999999985
No 179
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=58.90 E-value=25 Score=27.80 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=27.4
Q ss_pred eeEEcCceeEEEEecCC-eEEEEe-C-CccccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNG-MWHLSE-N-VKLRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~-~w~l~~-~-~g~~~~~D~VIlA~P 42 (119)
++|+++++|.+++..++ +..+.. + ++....+|.||+++.
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G 265 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATG 265 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccC
Confidence 78999999999987654 444432 2 223457999999964
No 180
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=58.84 E-value=15 Score=31.84 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=31.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
.++++.+.+|+.|.+.+.. |..+.|....+|.+|+||-...
T Consensus 73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecCccc
Confidence 4688999999999887764 6666676667999999975443
No 181
>PRK08244 hypothetical protein; Provisional
Probab=58.48 E-value=21 Score=28.59 Aligned_cols=48 Identities=10% Similarity=-0.130 Sum_probs=34.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeC--Cc-cccccCEEEEcCCHH-HHHhhc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSEN--VK-LRGQFDVVVIAHKGK-CANRLL 50 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~--~g-~~~~~D~VIlA~Pa~-qaa~LL 50 (119)
.++|+++++|++++..++++.+... +| ....+|.||.|.-.. ...+++
T Consensus 114 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 114 GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred CCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 3679999999999988888776542 34 345689999997543 344444
No 182
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=57.60 E-value=10 Score=30.08 Aligned_cols=51 Identities=22% Similarity=0.164 Sum_probs=34.8
Q ss_pred eeEEcCceeEEEEecCCeE-EEE--e-CCc-cccccCEEEEcCCHHHH--HhhcCCCC
Q 041088 4 FSIVRPCWISNLEPFNGMW-HLS--E-NVK-LRGQFDVVVIAHKGKCA--NRLLGSSG 54 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w-~l~--~-~~g-~~~~~D~VIlA~Pa~qa--a~LL~~~~ 54 (119)
++|.++++|..|.+.++.. .+. . +++ ....+|+||+++-.... ..||....
T Consensus 160 ~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKey~ 217 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKEYG 217 (477)
T ss_pred HhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHHhC
Confidence 5788999999999877763 232 2 333 44458999999986654 45655444
No 183
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=57.57 E-value=23 Score=29.21 Aligned_cols=43 Identities=19% Similarity=-0.001 Sum_probs=28.5
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCcc-ccccC-EEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVKL-RGQFD-VVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g~-~~~~D-~VIlA~Pa~q 45 (119)
.++|++++.|++|..++++. .+...++. ...++ +||+|+-...
T Consensus 228 Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 228 GIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred CCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 36899999999998877643 23333342 23465 7999986443
No 184
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=57.20 E-value=24 Score=28.11 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=27.5
Q ss_pred ceeEEcCceeEEEEe-cCCeEE-EEeCCc--cccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEP-FNGMWH-LSENVK--LRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~-~~~~w~-l~~~~g--~~~~~D~VIlA~Pa 43 (119)
.++++++++|.+++. .+++.. +...+| ....+|.||+|+..
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence 478999999999986 234433 333333 34568999999853
No 185
>PLN02546 glutathione reductase
Probab=55.15 E-value=29 Score=28.75 Aligned_cols=40 Identities=13% Similarity=-0.051 Sum_probs=28.5
Q ss_pred ceeEEcCceeEEEEecCC-eEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNG-MWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~-~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.++...++ ...+..+++....+|.||+++.
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G 347 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATG 347 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeec
Confidence 478999999999986543 3555555554444899999975
No 186
>PRK07512 L-aspartate oxidase; Provisional
Probab=54.03 E-value=17 Score=29.54 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=29.4
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCc-cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVK-LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g-~~~~~D~VIlA~Pa~q 45 (119)
.++|+.++.|.+|..+++++ .+...++ ....++.||+|+-...
T Consensus 151 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 151 SITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred CCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 47889999999987666543 2333333 2346899999997754
No 187
>PTZ00058 glutathione reductase; Provisional
Probab=54.02 E-value=31 Score=28.62 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=28.4
Q ss_pred ceeEEcCceeEEEEecCC-eEEEEe-CCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNG-MWHLSE-NVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~-~w~l~~-~~g~~~~~D~VIlA~P 42 (119)
.+++++++.|.+|+..++ +..+.. +++....+|.||+++.
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 478999999999987644 455443 3333457999999964
No 188
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=52.76 E-value=9.6 Score=23.17 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.0
Q ss_pred ccCEEEEcCCHHHHHhhcCCC
Q 041088 33 QFDVVVIAHKGKCANRLLGSS 53 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~ 53 (119)
.+|.||+++|+.+..+++...
T Consensus 61 ~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHHH
Confidence 589999999999998887553
No 189
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=52.38 E-value=30 Score=27.85 Aligned_cols=44 Identities=18% Similarity=0.031 Sum_probs=30.8
Q ss_pred ceeEEcCceeEEEEecCCeEE-EE--eCCc-cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LS--ENVK-LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~--~~~g-~~~~~D~VIlA~Pa~qa 46 (119)
.++|++++.|.+|..++++.. +. ..++ ....++.||+|+-....
T Consensus 143 gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 143 NIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 578999999999987665433 32 2222 24468999999987653
No 190
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=52.02 E-value=32 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=25.4
Q ss_pred ceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 10 CWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 10 ~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
..|.+++..++.|.+.++++. ..++.||+|+-+.
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCc
Confidence 566777666668899887776 4689999998643
No 191
>PRK07121 hypothetical protein; Validated
Probab=51.02 E-value=38 Score=27.21 Aligned_cols=43 Identities=14% Similarity=-0.054 Sum_probs=28.5
Q ss_pred ceeEEcCceeEEEEecCC-e-EEEE--eCCc-ccccc-CEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNG-M-WHLS--ENVK-LRGQF-DVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~-~-w~l~--~~~g-~~~~~-D~VIlA~Pa~q 45 (119)
.++|+++++|++|..+++ + ..+. ..++ ....+ +.||+|+-...
T Consensus 191 gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 191 GVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred CCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 468999999999987643 3 2232 2222 23456 99999997554
No 192
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=50.52 E-value=31 Score=27.32 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=25.8
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
.++++++++|.+++. . .+...+|....+|.||+++.
T Consensus 203 gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G 238 (438)
T PRK13512 203 EIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVG 238 (438)
T ss_pred CCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcC
Confidence 468899999999963 2 34444454456999999976
No 193
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=48.56 E-value=37 Score=28.08 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=28.3
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEeCCc-ccccc-CEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSENVK-LRGQF-DVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~~~g-~~~~~-D~VIlA~Pa~qa 46 (119)
.++|+++++|.+|..++++ +.+..+++ ....+ ++||+|+-....
T Consensus 235 Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 235 GVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred CCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4689999999998866553 22332222 22344 789999875554
No 194
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=48.28 E-value=10 Score=31.09 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=32.0
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~P 42 (119)
+.|+-|..|+++.+......|..++|.....|.||+|+-
T Consensus 408 V~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG 446 (659)
T KOG1346|consen 408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVG 446 (659)
T ss_pred ceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEec
Confidence 678888999999887777888888886666899999973
No 195
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.11 E-value=44 Score=28.05 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCCeEE----EEeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH----LSENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~----l~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
+++|..++.|.+|..+++++. +...+| ....+++||+|+-...
T Consensus 165 ~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 165 RIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred ceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 388999999999987666432 122334 2346899999997643
No 196
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=48.08 E-value=38 Score=27.91 Aligned_cols=51 Identities=10% Similarity=-0.100 Sum_probs=36.9
Q ss_pred cceeEEcCceeEEEEecCCeEEE---EeCCc----cccccCEEEEcCCHHHHHhhcCC
Q 041088 2 SMFSIVRPCWISNLEPFNGMWHL---SENVK----LRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~~w~l---~~~~g----~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
.++.|.+++.|+.|..+++++.. ...++ .....+.|||+.-+-+..+||--
T Consensus 216 ~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 216 PNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred CceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence 47899999999999999887542 22322 12357899999887777777643
No 197
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.98 E-value=39 Score=28.08 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=29.1
Q ss_pred ceeEEcCceeEEEEecC-CeE---EEEeCCc-cccccC-EEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFN-GMW---HLSENVK-LRGQFD-VVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~w---~l~~~~g-~~~~~D-~VIlA~Pa~qa 46 (119)
.++|+++++|++|..++ ++. .+..+++ ....++ +||||+-....
T Consensus 227 gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 227 GVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred CceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 47899999999999864 332 2222333 233466 69999976653
No 198
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=47.45 E-value=51 Score=23.83 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=27.1
Q ss_pred ceeEEcCceeEEEEecCCe--EEEEe-CCc--cccccCEEEEcCCH
Q 041088 3 MFSIVRPCWISNLEPFNGM--WHLSE-NVK--LRGQFDVVVIAHKG 43 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~--w~l~~-~~g--~~~~~D~VIlA~Pa 43 (119)
.++++++++|.++..++.- ..+.. .+| ....+|.||+++..
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 5788999999999865432 22322 122 34579999999873
No 199
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=47.32 E-value=44 Score=27.76 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=30.0
Q ss_pred ceeEEcCceeEEEEecCCeEE----EEeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH----LSENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~----l~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.+++..++.|.+|..++++.. +...+| ....++.||+|+-...
T Consensus 148 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 148 QIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred CcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 467889999999987666542 233344 3446899999997644
No 200
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.38 E-value=35 Score=27.91 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=29.3
Q ss_pred ceeEEcCceeEEEEecCCe-EE-E---EeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM-WH-L---SENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~-l---~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.++|.+++.|++|..++++ .. + ...+| ....++.||+||-...
T Consensus 148 gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 148 RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4789999999999876654 21 2 21334 2346799999997654
No 201
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=45.45 E-value=49 Score=26.90 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=28.6
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCc-cccccC-EEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVK-LRGQFD-VVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g-~~~~~D-~VIlA~Pa~q 45 (119)
.++|+++++|++|..+++.. .+..+++ ....++ +||||+-..+
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 57899999999998766543 2222333 234565 7999987653
No 202
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=45.33 E-value=36 Score=27.94 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=28.9
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
.++++++.|+.+...... |...+|....|+.+|+||-.
T Consensus 142 Ie~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 142 IELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence 578899999999877664 44445555679999999866
No 203
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.21 E-value=18 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=24.4
Q ss_pred ccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhh
Q 041088 31 RGQFDVVVIAHKGKCANRLLGSSGLPQIARQMK 63 (119)
Q Consensus 31 ~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~ 63 (119)
.+..|.||+|+|+++=...|.... .+....++
T Consensus 81 ~g~WdtlILavtaDAY~~VL~ql~-~~~L~~vk 112 (429)
T PF10100_consen 81 EGEWDTLILAVTADAYLDVLQQLP-WEVLKRVK 112 (429)
T ss_pred cccccEEEEEechHHHHHHHHhcC-HHHHhhCC
Confidence 446899999999999999998877 54433333
No 204
>PRK07804 L-aspartate oxidase; Provisional
Probab=44.74 E-value=43 Score=27.46 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=28.9
Q ss_pred eeEEcCceeEEEEecCC----eEEEE-----eCCc-cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNG----MWHLS-----ENVK-LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~----~w~l~-----~~~g-~~~~~D~VIlA~Pa~q 45 (119)
++|..++.|.+|..+++ +..+. ..++ ....++.||+|+-...
T Consensus 159 V~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 159 LDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 68899999999987654 34343 1233 2346899999997644
No 205
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.36 E-value=47 Score=27.32 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=27.2
Q ss_pred eeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa 43 (119)
+++ +++.|..+...++.|.+...++.. .+|.||+|+-+
T Consensus 75 v~~-~~~~V~~i~~~~~~~~V~~~~g~~-~a~~lVlATGa 112 (555)
T TIGR03143 75 VKF-LQAEVLDVDFDGDIKTIKTARGDY-KTLAVLIATGA 112 (555)
T ss_pred CEE-eccEEEEEEecCCEEEEEecCCEE-EEeEEEECCCC
Confidence 344 367888888877778887765543 57899999854
No 206
>PLN02697 lycopene epsilon cyclase
Probab=44.31 E-value=47 Score=27.44 Aligned_cols=41 Identities=7% Similarity=-0.055 Sum_probs=29.5
Q ss_pred eeEEcCceeEEEEecCCeEEE-EeCCccccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWHL-SENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l-~~~~g~~~~~D~VIlA~Pa~q 45 (119)
+++ ++++|+.|...++++.+ ...+|....++.||.|+-+..
T Consensus 207 V~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 207 VSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 344 67899999888777754 344454456899999987665
No 207
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.30 E-value=27 Score=28.57 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=22.9
Q ss_pred ceeEEEEec--CCeEEEEeCCccccccCEEEEcC
Q 041088 10 CWISNLEPF--NGMWHLSENVKLRGQFDVVVIAH 41 (119)
Q Consensus 10 ~~V~~i~~~--~~~w~l~~~~g~~~~~D~VIlA~ 41 (119)
++.+++.+. +.+|.+..++|....||.+||||
T Consensus 127 ~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 127 EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 455556665 45688888778655689999986
No 208
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=44.03 E-value=52 Score=27.12 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=28.8
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCc-cccccC-EEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVK-LRGQFD-VVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g-~~~~~D-~VIlA~Pa~qa 46 (119)
.++|+++++|++|..++++. .+..+++ ....++ .||+|+-....
T Consensus 222 gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 222 GVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 47899999999998766543 2222333 234464 79999875544
No 209
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=43.62 E-value=57 Score=27.26 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=29.0
Q ss_pred ceeEEcCceeEEEEecCC-e---EEEEe-CCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNG-M---WHLSE-NVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~-~---w~l~~-~~g--~~~~~D~VIlA~Pa~q 45 (119)
.++|++++.|.+|..+++ + +.+.. .+| ....++.||+||-...
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 478999999999987543 3 22222 233 2346899999997643
No 210
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.53 E-value=57 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=30.5
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEe-CCc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSE-NVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~-~~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|++++.|.+|..++++ +.+.. .+| ....++.||+||-....
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 4789999999999876654 22322 234 24468999999987554
No 211
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=43.44 E-value=55 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=30.0
Q ss_pred ceeEEcCceeEEEEecCCeEE-E---EeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-L---SENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l---~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.+++.+++.|++|..+++++. + ...+|. ...++.||+|+-...
T Consensus 143 gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 143 GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 468999999999987766542 2 223342 346899999997654
No 212
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=42.85 E-value=53 Score=25.56 Aligned_cols=40 Identities=8% Similarity=-0.140 Sum_probs=30.6
Q ss_pred ceeEEcCceeEEEEecCCeEEEEe-CCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSE-NVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~-~~g~~~~~D~VIlA~P 42 (119)
-++++.++++..+..+++++.+.. .++.+..++.||.|.-
T Consensus 109 Gae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG 149 (396)
T COG0644 109 GAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 (396)
T ss_pred CCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence 467899999999999998876654 3323446899999983
No 213
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=42.70 E-value=55 Score=26.99 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=28.5
Q ss_pred ceeEEcCceeEEEEecCCeE---EEEeCCc-ccccc-CEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW---HLSENVK-LRGQF-DVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w---~l~~~~g-~~~~~-D~VIlA~Pa~qa 46 (119)
.++|+++++|++|..++++. .+..+++ ....+ ++||||+-....
T Consensus 222 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 222 GVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 47899999999998766542 2222333 22345 479999865443
No 214
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.57 E-value=11 Score=28.39 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=32.9
Q ss_pred EEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEe
Q 041088 24 LSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAA 76 (119)
Q Consensus 24 l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~ 76 (119)
+..++. ....+|.||++||.-.++--|..-. |-+.-.++.+...|+....+.
T Consensus 137 v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGG-PIv~P~~~~~~itPI~P~~~~ 190 (264)
T PRK03501 137 VYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRG-AVVDPLIPCFQVSELASLNNN 190 (264)
T ss_pred EEECCEEeEEEecCEEEEeCCCchHHHHhhcCC-cccCCCCCeEEEEeccccCcc
Confidence 444444 2235899999999888877776655 444344455666666665443
No 215
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.52 E-value=42 Score=27.73 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=29.5
Q ss_pred ceeEEcCceeEEEEecCCeEE----EEeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH----LSENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~----l~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.++|..++.|.+|..++++.. +...+| ....+++||+|+-...
T Consensus 149 gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 149 GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 478999999999987665421 222333 2346899999997654
No 216
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=42.42 E-value=43 Score=25.31 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=28.6
Q ss_pred eeEEcCceeEEEEecCCeEE---EEeCCccccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWH---LSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~---l~~~~g~~~~~D~VIlA~P 42 (119)
+++++++.+.+|+..++... +....+....+|.++++++
T Consensus 193 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g 234 (415)
T COG0446 193 VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPG 234 (415)
T ss_pred cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeec
Confidence 57889999999988776533 3444444456999999985
No 217
>PLN02727 NAD kinase
Probab=41.54 E-value=36 Score=30.31 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=43.2
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCCCCCCCCceeeEEECCCC-cEEEEEecCCCC
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLPLGSASTFEGAFVKGVD-SVSWMANNSAKL 110 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~~~p~~~~~~~~~~~~~~-~~~wv~~~s~Kp 110 (119)
..+|.||++||.-.+|--|..-. |-+.-.+..+-..||.-..|.+ +|+-+|+.... -+.+.+.. .-.|++.|....
T Consensus 861 yrgDGLIVSTPTGSTAYSLSAGG-PIVhP~v~aIvITPIcPHSLs~-RPIVLp~ds~I-~IkI~~~sr~~a~Ls~DGq~~ 937 (986)
T PLN02727 861 VQGDGVIVATPTGSTAYSTAAGG-SMVHPNVPCMLFTPICPHSLSF-RPVILPDSARL-ELKIPDDARSNAWVSFDGKRR 937 (986)
T ss_pred eecceEEEECCCchHHhHhhcCC-ceeCCCCCeEEEEecCcccCCC-CCEEECCCCeE-EEEEccCCCCceEEEECCCee
Confidence 36899999999877777676654 4343345666677776666554 45544421111 12232211 135777776654
No 218
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.21 E-value=39 Score=27.98 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=32.7
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEEeecCCCCCC
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLAAFEDPLPLG 84 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~~~~p 84 (119)
..+|.||++||.-.++--|..-. |-+.-.+..+-..||.-..|.+ +|+-+|
T Consensus 378 ~rgDGLIVSTPTGSTAYsLSAGG-PIV~P~l~~ivlTPIcPHsLs~-RPIVlp 428 (508)
T PLN02935 378 VQGDGLILSTTSGSTAYSLAAGG-SMVHPQVPGILFTPICPHSLSF-RPLILP 428 (508)
T ss_pred EECCcEEEecCccHHHHHHhcCC-cccCCCCCeEEEEecCCCcCCC-CCeEEC
Confidence 35899999999888877776655 4443344556666666555443 344444
No 219
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=41.11 E-value=61 Score=26.80 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=29.5
Q ss_pred ceeEEcCceeEEEEecCCeEE-E---EeCCc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-L---SENVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l---~~~~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|..++.+++|..++++.. + ...+| ....+++|||||-....
T Consensus 133 gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 133 DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 468899999999987655421 1 22334 23467999999976553
No 220
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=41.08 E-value=45 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=29.7
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
+++++.+++|+.|...+..+.+.. | ...+|.+|+|+-+..
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~--g-~~~yd~LvlatGa~~ 106 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDD--G-EIEYDYLVLATGARP 106 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECC--C-cccccEEEEcCCCcc
Confidence 578899999999988877655543 3 335899999975443
No 221
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=40.68 E-value=53 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred ceeEEcCceeEEEEec--CCeEE-----EEeCCc----cccccCEEEEcC
Q 041088 3 MFSIVRPCWISNLEPF--NGMWH-----LSENVK----LRGQFDVVVIAH 41 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~--~~~w~-----l~~~~g----~~~~~D~VIlA~ 41 (119)
-++++++++|+.|..+ ++.-+ +..+++ .....|.||+|+
T Consensus 240 GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTn 289 (576)
T PRK13977 240 GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTN 289 (576)
T ss_pred CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence 4789999999999875 32122 222222 234689999994
No 222
>PRK14694 putative mercuric reductase; Provisional
Probab=40.58 E-value=58 Score=25.98 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=17.8
Q ss_pred cCCeEEEEeCCc--cccccCEEEEcCC
Q 041088 18 FNGMWHLSENVK--LRGQFDVVVIAHK 42 (119)
Q Consensus 18 ~~~~w~l~~~~g--~~~~~D~VIlA~P 42 (119)
+.+.|++...+| ....||.||+||-
T Consensus 123 d~~~~~V~~~~g~~~~~~~d~lViATG 149 (468)
T PRK14694 123 DERTLTVTLNDGGEQTVHFDRAFIGTG 149 (468)
T ss_pred cCCEEEEEecCCCeEEEECCEEEEeCC
Confidence 345688876554 3457999999974
No 223
>PRK06444 prephenate dehydrogenase; Provisional
Probab=40.40 E-value=21 Score=25.61 Aligned_cols=21 Identities=14% Similarity=0.032 Sum_probs=18.1
Q ss_pred ccCEEEEcCCHHHHHhhcCCC
Q 041088 33 QFDVVVIAHKGKCANRLLGSS 53 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~ 53 (119)
.+|.||+|+|...+.+++...
T Consensus 31 ~~DlVilavPv~~~~~~i~~~ 51 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIESY 51 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHHh
Confidence 589999999999998887654
No 224
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.39 E-value=12 Score=28.65 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=31.7
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLA 75 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l 75 (119)
.+..++. .....|.||++||.-.++--|..-. |-+.-.+..+...|+....+
T Consensus 166 ~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGG-PIv~P~~~~~~vtPi~ph~l 219 (305)
T PRK02645 166 ELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGG-PILHPGIDAIIVTPICPMSL 219 (305)
T ss_pred EEEECCEEEEEEecCEEEEecCCChhhhhhhcCC-cccCCCCCeEEEEecCcccc
Confidence 3444544 2335899999999887777776654 43433445555556555444
No 225
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.31 E-value=14 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=28.9
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEE
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLA 75 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l 75 (119)
..+|.||++||.-.++--|..-. |-+.-.+..+-..|+....+
T Consensus 174 ~~~DGlIVsTPTGSTAYslSAGG-PIv~P~~~~~~ltPI~Ph~l 216 (292)
T PRK01911 174 YWADGLIVATPTGSTGYSLSCGG-PIIVPDAKSFVITPIAPHNL 216 (292)
T ss_pred EeeceeEECCCCcHHHHHhhCCC-cccCCCCCEEEEEecccCcc
Confidence 36899999999888877777655 44433445555666655444
No 226
>PRK08071 L-aspartate oxidase; Provisional
Probab=39.38 E-value=46 Score=27.08 Aligned_cols=43 Identities=23% Similarity=0.157 Sum_probs=29.0
Q ss_pred ceeEEcCceeEEEEecCCeEE-E--EeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-L--SENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l--~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++|+.++.|.+|..+++++. + ...+|. ...++.||+|+-...
T Consensus 143 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 143 HVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred CCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 468899999999977666532 2 222332 346899999996644
No 227
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=38.69 E-value=28 Score=25.66 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=15.8
Q ss_pred cccCEEEEcCCHHHHHhhcCC
Q 041088 32 GQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
..+|.||+++|...+.+++..
T Consensus 44 ~~~DlvvlavP~~~~~~~l~~ 64 (258)
T PF02153_consen 44 EDADLVVLAVPVSAIEDVLEE 64 (258)
T ss_dssp GCCSEEEE-S-HHHHHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHH
Confidence 458999999999999888744
No 228
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=38.20 E-value=57 Score=27.26 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=29.3
Q ss_pred eeEEcCceeEEEEecCCeEE-E---EeCCc--cccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWH-L---SENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~-l---~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
++|+.++.|..|..+++++. + ...++ ....++.||+|+-...
T Consensus 148 V~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 148 DNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 78999999999976665421 2 22233 2446899999998655
No 229
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.15 E-value=15 Score=28.10 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=27.1
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEE
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALL 74 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~ 74 (119)
..+|.||++||.-.++--|..-. |-+.-.+..+-..|+.--.
T Consensus 179 ~~~DGlIVsTPTGSTAYslSAGG-PIv~P~~~~~~itPI~Phs 220 (305)
T PRK02649 179 IAADGVILSTPTGSTAYSLSAGG-PVITPDVPVLQLTPICPHS 220 (305)
T ss_pred EecCeEEEeCCCcHHHHHhhCCC-cccCCCCCeEEEEecCcCC
Confidence 36899999999888877776655 4333344555555554433
No 230
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.91 E-value=68 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=30.0
Q ss_pred ceeEEcCceeEEEEecCCeEE----EEeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH----LSENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~----l~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.+++..++.|.+|..+++.+. +...+|. ...++.||+|+-...
T Consensus 152 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 152 NIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred CCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 468899999999987666542 2223442 346899999997764
No 231
>PRK08401 L-aspartate oxidase; Provisional
Probab=37.66 E-value=63 Score=25.90 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=26.4
Q ss_pred eeEEcCceeEEEEecCCeEE-EEeCCccccccCEEEEcCCHHHH
Q 041088 4 FSIVRPCWISNLEPFNGMWH-LSENVKLRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~-l~~~~g~~~~~D~VIlA~Pa~qa 46 (119)
+++..+ .+..|..+++++. +..+ +....++.||+|+-....
T Consensus 135 v~i~~~-~v~~l~~~~g~v~Gv~~~-g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 135 VNFIRG-FAEELAIKNGKAYGVFLD-GELLKFDATVIATGGFSG 176 (466)
T ss_pred CEEEEe-EeEEEEeeCCEEEEEEEC-CEEEEeCeEEECCCcCcC
Confidence 456655 6777876666653 4443 334468999999976553
No 232
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=37.36 E-value=63 Score=24.95 Aligned_cols=42 Identities=10% Similarity=-0.251 Sum_probs=28.6
Q ss_pred ceeEEcCceeEEEEe-cCCeEEEEe-CCc--cccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEP-FNGMWHLSE-NVK--LRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~-~~~~w~l~~-~~g--~~~~~D~VIlA~Pa~ 44 (119)
.++++++++|.+++. ++++..+.. .+| ....+|.||-|.-..
T Consensus 117 gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~ 162 (392)
T PRK08243 117 GGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFH 162 (392)
T ss_pred CCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCC
Confidence 467999999999976 455555554 334 244689999886533
No 233
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=37.30 E-value=58 Score=24.02 Aligned_cols=40 Identities=20% Similarity=0.034 Sum_probs=27.2
Q ss_pred eeEEcCceeEEEEecCCeEEE---EeC-----------CccccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHL---SEN-----------VKLRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l---~~~-----------~g~~~~~D~VIlA~Pa 43 (119)
+++..++.|+.+..+++++++ ..+ +.....++.||.|+..
T Consensus 115 V~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 115 AKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred CEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 678999999999887663222 111 1123468999999973
No 234
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.12 E-value=77 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=29.8
Q ss_pred ceeEEcCceeEEEEecCCeEE-EE--e-CCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH-LS--E-NVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~-l~--~-~~g--~~~~~D~VIlA~Pa~q 45 (119)
.+++..++.+.+|..+++++. +. . .++ ....+++||+||-...
T Consensus 150 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 150 NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 468899999999988766532 22 2 233 2346799999998765
No 235
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=37.11 E-value=80 Score=25.88 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=28.9
Q ss_pred ceeEEcCceeEEEEecCCeE-EEEe----C-------------Cc-cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW-HLSE----N-------------VK-LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w-~l~~----~-------------~g-~~~~~D~VIlA~Pa~qa 46 (119)
.++|++++++++|..++++. -+.. . ++ ....++.|||||-....
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 37899999999998766542 1221 1 12 23457999999875543
No 236
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=36.81 E-value=85 Score=26.03 Aligned_cols=44 Identities=16% Similarity=-0.047 Sum_probs=27.7
Q ss_pred ceeEEcCceeEEEEecCCeE-EE--EeCCcc-cccc-CEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW-HL--SENVKL-RGQF-DVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w-~l--~~~~g~-~~~~-D~VIlA~Pa~qa 46 (119)
.++|+++++|++|..++++. -+ ..+++. ...+ ++||||+-....
T Consensus 231 Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 231 GIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred CCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 46899999999998654432 12 223332 2334 689999875553
No 237
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=36.05 E-value=77 Score=27.00 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=27.0
Q ss_pred eeEEcCceeEEEEecCCe--EEEEeC-------Cc--------cccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGM--WHLSEN-------VK--------LRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~--w~l~~~-------~g--------~~~~~D~VIlA~P 42 (119)
++|+++++|.+|+..+++ ..+... ++ ....+|.||+|+-
T Consensus 369 V~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 369 VRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred cEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 789999999999876543 444321 11 1356899999974
No 238
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=35.95 E-value=98 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.001 Sum_probs=28.7
Q ss_pred eeEEcCceeEEEEecC--Ce-EEEEe----CCcc-ccccCEEEEcCCHHH
Q 041088 4 FSIVRPCWISNLEPFN--GM-WHLSE----NVKL-RGQFDVVVIAHKGKC 45 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~--~~-w~l~~----~~g~-~~~~D~VIlA~Pa~q 45 (119)
++|..+++|.+|..++ ++ +.+.. .++. ...+|.||+|+-++.
T Consensus 247 a~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 247 AAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 5788899999998763 43 33332 2222 346899999998763
No 239
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.86 E-value=20 Score=26.94 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=31.0
Q ss_pred EEeCCcc--ccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEE
Q 041088 24 LSENVKL--RGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALL 74 (119)
Q Consensus 24 l~~~~g~--~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~ 74 (119)
+..++.. ...+|.||++||.-.+|--|..-. |-+.-.++.+...|+....
T Consensus 125 v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGG-PIv~P~~~~~~itPI~Ph~ 176 (259)
T PRK00561 125 IFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKG-AVIFPRIDVIQIIELNPLL 176 (259)
T ss_pred EEECCEEEEEEecCEEEEeCchHHHHHHHhCCC-CccCCCCCeEEEEeeCCCC
Confidence 4444442 235899999999888877776654 4333344555556655544
No 240
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.79 E-value=19 Score=27.17 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=31.9
Q ss_pred EEEeCCcc--ccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEEE
Q 041088 23 HLSENVKL--RGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALLA 75 (119)
Q Consensus 23 ~l~~~~g~--~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~l 75 (119)
.+..+++. ....|.||++||.-.++--|..-. |-+.-.+..+...|+....+
T Consensus 152 ~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGG-pIv~p~~~~~~vtPi~p~~l 205 (277)
T PRK03708 152 KYYVDGELADEVRADGLIISTPTGSTAYAMSAGG-PFVDPRLDAILIAPLCPFKL 205 (277)
T ss_pred EEEECCEEEEEEecCEEEEeCCCchHHHHhhCCC-cccCCCCCeEEEEecccccC
Confidence 34445542 235899999999888877777655 43333445555555555443
No 241
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=35.39 E-value=80 Score=26.75 Aligned_cols=44 Identities=9% Similarity=-0.244 Sum_probs=30.7
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEe-CCcc--ccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSE-NVKL--RGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~-~~g~--~~~~D~VIlA~Pa~qa 46 (119)
.++|+.++.|.+|..++++ ..+.. .+|. ...+++||+||-....
T Consensus 172 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 172 GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 4688999999999876654 33432 3442 3357999999986654
No 242
>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2). These proteins are essential for the assembly of the mitochondrial F1-F0 complex. Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with N-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment []. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0043461 proton-transporting ATP synthase complex assembly; PDB: 2R6I_B 2ZD2_B 2P4X_B 2R31_A.
Probab=34.96 E-value=56 Score=21.62 Aligned_cols=37 Identities=5% Similarity=-0.035 Sum_probs=23.6
Q ss_pred EEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcC
Q 041088 15 LEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 15 i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~ 51 (119)
|...++||.+..+|...-.--.=++.+|...+|.++.
T Consensus 9 v~~~~~g~~V~LDgR~lkTP~~~~l~vps~~LA~avA 45 (122)
T PF07542_consen 9 VEENDGGFQVLLDGRPLKTPAGNPLVVPSEALAEAVA 45 (122)
T ss_dssp EEEETTSEEEEETTEE-BETTSEB--BSSHHHHHHHH
T ss_pred EEecCCCEEEEeCCCCCCCCCCCeeEcCcHHHHHHHH
Confidence 3446677999987664333466778888888777653
No 243
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=34.94 E-value=67 Score=24.95 Aligned_cols=35 Identities=14% Similarity=-0.126 Sum_probs=25.2
Q ss_pred EEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHH
Q 041088 6 IVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 6 i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
|+++++|.++ +.+++.+ .+|....+|.||-|.+..
T Consensus 103 i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 103 VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCC
Confidence 7778899988 4456666 345445689999998744
No 244
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=34.48 E-value=75 Score=25.45 Aligned_cols=39 Identities=15% Similarity=-0.000 Sum_probs=25.4
Q ss_pred eeEEcCceeEEEEecCCeEE-EE-----eC--------Cc-cccccCEEEEcCC
Q 041088 4 FSIVRPCWISNLEPFNGMWH-LS-----EN--------VK-LRGQFDVVVIAHK 42 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~-l~-----~~--------~g-~~~~~D~VIlA~P 42 (119)
+++++++.+.+|...+++.. +. .. ++ ....+|.||+|+-
T Consensus 344 V~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 344 VEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred CeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 67888999998875454432 21 11 11 3457999999986
No 245
>PRK12839 hypothetical protein; Provisional
Probab=34.35 E-value=1e+02 Score=25.65 Aligned_cols=43 Identities=14% Similarity=-0.041 Sum_probs=27.6
Q ss_pred ceeEEcCceeEEEEecC-Ce---EEEEeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFN-GM---WHLSENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~---w~l~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++|+.+++|++|..++ ++ ..+...++. ....+.||+|+-...
T Consensus 228 Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 228 GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 36899999999997653 33 222333342 223589999986544
No 246
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=34.19 E-value=52 Score=18.59 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=26.1
Q ss_pred cCceeEEEEecCCeEEEEeCCc-cccccCEEEEcCCHHHHHhhc
Q 041088 8 RPCWISNLEPFNGMWHLSENVK-LRGQFDVVVIAHKGKCANRLL 50 (119)
Q Consensus 8 ~~~~V~~i~~~~~~w~l~~~~g-~~~~~D~VIlA~Pa~qaa~LL 50 (119)
+++.|..|.+. +..+...+. ....-|.|++..+.....++.
T Consensus 26 ~~~~i~~i~R~--~~~~~p~~~~~l~~gD~l~v~g~~~~i~~~~ 67 (71)
T PF02080_consen 26 YGVRIVAIKRG--GEIIIPDGDTVLQAGDILIVVGDPEDIERFR 67 (71)
T ss_dssp HTEEEEEEEET--EEEES--TT-BE-TTEEEEEEEEHHHHHHHH
T ss_pred CCEEEEEEEEC--CEEECCCCCCEECCCCEEEEEECHHHHHHHH
Confidence 47888889765 333332222 344569999999988877664
No 247
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.37 E-value=20 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=27.4
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
..+|.||++||.-.++--|..-. |-+.-.+..+...|+..
T Consensus 146 ~~gDGlIVsTptGSTAYslSaGG-PIv~P~~~~~~ltPI~~ 185 (265)
T PRK04885 146 FRGDGLCVSTPTGSTAYNKSLGG-AVLHPSIEALQLTEIAS 185 (265)
T ss_pred EEcCEEEEECCCChHHHHhhCCC-ceeCCCCCeEEEEeecc
Confidence 35899999999888777776654 43333446666677664
No 248
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.69 E-value=76 Score=25.79 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=27.2
Q ss_pred ceeEEcCceeEEEEecCCeE-EEEeC---Cc--cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGMW-HLSEN---VK--LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w-~l~~~---~g--~~~~~D~VIlA~P 42 (119)
.++|++++.|.++..++++. .+... +| ....+|.||+++-
T Consensus 402 gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G 447 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIG 447 (515)
T ss_pred CCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeC
Confidence 57899999999998765542 23321 12 3456999999974
No 249
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.66 E-value=24 Score=26.77 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=26.2
Q ss_pred cccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEE
Q 041088 32 GQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWAL 73 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v 73 (119)
..+|.||++||.-.++--|..-. |-+.-.+..+-..|+.--
T Consensus 175 ~~~DGlIVSTPTGSTAYslSAGG-PIv~P~~~~~~ltPI~Ph 215 (287)
T PRK14077 175 YFGDGVIVATPAGSTAYNMSANG-PIIYPLSQVFILTPVCSH 215 (287)
T ss_pred EEcCEEEEeCCCchhHhHhhcCC-cccCCCCCeEEEEecccc
Confidence 35899999999887777776654 433333344545555443
No 250
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=32.11 E-value=96 Score=26.37 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=28.0
Q ss_pred ceeEEcCceeEEEEecCCeE-EEEeCCccccccCEEEEcCCHH
Q 041088 3 MFSIVRPCWISNLEPFNGMW-HLSENVKLRGQFDVVVIAHKGK 44 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w-~l~~~~g~~~~~D~VIlA~Pa~ 44 (119)
++++ +...|..+..++++. .|...+|....++.||+|+-..
T Consensus 115 nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 115 NLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 4555 356788887766654 3556666555689999999864
No 251
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=31.76 E-value=89 Score=24.83 Aligned_cols=40 Identities=10% Similarity=-0.071 Sum_probs=26.4
Q ss_pred ceeEEcCceeEEEEecCCe---EEEEe----------------C-CccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM---WHLSE----------------N-VKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~---w~l~~----------------~-~g~~~~~D~VIlA~P 42 (119)
.+++++++.+.+|..++++ ..+.. . ++....+|.||+|+.
T Consensus 325 GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 384 (457)
T PRK11749 325 GVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG 384 (457)
T ss_pred CCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc
Confidence 4678899999998766543 33321 1 123457999999975
No 252
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=31.28 E-value=55 Score=26.06 Aligned_cols=22 Identities=23% Similarity=-0.029 Sum_probs=14.4
Q ss_pred eEEEEeCCccccccCEEEEcCC
Q 041088 21 MWHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 21 ~w~l~~~~g~~~~~D~VIlA~P 42 (119)
..+|...+|....||+||+||-
T Consensus 119 ~~~V~~~~g~~~~~d~lIiATG 140 (452)
T TIGR03452 119 PRTLRTGDGEEITGDQIVIAAG 140 (452)
T ss_pred CCEEEECCCcEEEeCEEEEEEC
Confidence 3455554454456899999973
No 253
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=31.16 E-value=42 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.6
Q ss_pred ccCEEEEcCCHHHHHhhcCCCC
Q 041088 33 QFDVVVIAHKGKCANRLLGSSG 54 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~~ 54 (119)
.+|.||+++|..++.+++....
T Consensus 64 ~aD~VivavPi~~~~~~l~~l~ 85 (279)
T COG0287 64 EADLVIVAVPIEATEEVLKELA 85 (279)
T ss_pred cCCEEEEeccHHHHHHHHHHhc
Confidence 4799999999999988876654
No 254
>PRK07395 L-aspartate oxidase; Provisional
Probab=31.13 E-value=61 Score=26.80 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=28.6
Q ss_pred ceeEEcCceeEEEEecC--Ce---EEEEeCCc-cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFN--GM---WHLSENVK-LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~--~~---w~l~~~~g-~~~~~D~VIlA~Pa~q 45 (119)
.++|.+++.|.+|..++ +. +.+..++. ....++.||+||-...
T Consensus 149 gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 149 NIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 57899999999997653 32 33333332 2346899999998743
No 255
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.87 E-value=25 Score=26.79 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=29.3
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
.+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+-..|+.-
T Consensus 168 ~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGG-PIv~P~~~~~~itPI~P 218 (296)
T PRK04539 168 EVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGG-PIMQAGLHAFTLVPICP 218 (296)
T ss_pred EEEECCEEEEEEecCeEEEECCCcHHHHHhhCCC-ceeCCCCCeEEEEecCc
Confidence 3444544 2335899999999888877776655 43333344444555443
No 256
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.64 E-value=19 Score=27.42 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWALL 74 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v~ 74 (119)
.+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+...|+....
T Consensus 162 ~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGG-pIv~p~~~~~~itPI~ph~ 214 (295)
T PRK01231 162 ELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGG-PIMHPKLDAIVLVPMFPHT 214 (295)
T ss_pred EEEECCEEEEEEEcceEEEeCCCCchhhhhhcCC-ceecCCCCeEEEEecCCCc
Confidence 3444444 2235899999999888887777655 4333334445555555433
No 257
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=30.38 E-value=1e+02 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=29.4
Q ss_pred ceeEEcCceeEEEEecC-----C----e---EEEEeC---Cc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFN-----G----M---WHLSEN---VK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-----~----~---w~l~~~---~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|++++++++|..++ + + ..+... +| ....+++|||||-....
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 47899999999998753 2 2 122222 34 24467999999976554
No 258
>PRK08275 putative oxidoreductase; Provisional
Probab=30.17 E-value=1.2e+02 Score=24.94 Aligned_cols=43 Identities=9% Similarity=-0.070 Sum_probs=29.1
Q ss_pred ceeEEcCceeEEEEec-CCeEE-E---EeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGMWH-L---SENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~w~-l---~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++|..++.|.+|..+ ++... + ...+|. ...++.||+|+-...
T Consensus 151 gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 151 RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 4689999999999876 44332 2 223342 346899999997654
No 259
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=30.09 E-value=66 Score=23.72 Aligned_cols=40 Identities=15% Similarity=-0.090 Sum_probs=26.2
Q ss_pred ceeEEcCceeEEEEecCC-e-EEEEeC-----------CccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNG-M-WHLSEN-----------VKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~-~-w~l~~~-----------~g~~~~~D~VIlA~P 42 (119)
.++++++++|+.+..+++ + +.+..+ +.....++.||.|+-
T Consensus 118 Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG 170 (257)
T PRK04176 118 GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATG 170 (257)
T ss_pred CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeC
Confidence 468899999999987655 2 112111 112346899999984
No 260
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=29.80 E-value=21 Score=27.08 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=28.4
Q ss_pred EEeCCcc--ccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 24 LSENVKL--RGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 24 l~~~~g~--~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
+..+++. ....|.||++||.-.++--|..-. |-+.-.+..+...|+..
T Consensus 164 v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGG-PIv~p~~~~~~ltPI~p 213 (291)
T PRK02155 164 VSVDGRFMYNQRSDGLIVATPTGSTAYALSAGG-PILHPQLPGWVLVPIAP 213 (291)
T ss_pred EEECCEEEEEEecCeEEEECCCchhhhhhhcCC-cccCCCCCeEEEEecCc
Confidence 3445542 235899999999888877776654 43333334444444433
No 261
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=29.73 E-value=35 Score=22.42 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.2
Q ss_pred cccCEEEEcCCHHHHHhhcCC
Q 041088 32 GQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
..+|.||+|+.+++....++.
T Consensus 66 ~~~D~viv~vKa~~~~~~l~~ 86 (151)
T PF02558_consen 66 GPYDLVIVAVKAYQLEQALQS 86 (151)
T ss_dssp STESEEEE-SSGGGHHHHHHH
T ss_pred CCCcEEEEEecccchHHHHHH
Confidence 368999999999998776644
No 262
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.52 E-value=1.1e+02 Score=25.59 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=29.6
Q ss_pred ceeEEcCceeEEEEecC-CeE---EE-EeCCc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPFN-GMW---HL-SENVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~w---~l-~~~~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|..++.+.+|..++ ++. .+ ...+| ....+++||+||-....
T Consensus 163 gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 163 NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 46889999999998765 332 22 22344 24457999999976554
No 263
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.30 E-value=1.2e+02 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=29.2
Q ss_pred ceeEEcCceeEEEEec-CCeE---EE-EeCCc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGMW---HL-SENVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~w---~l-~~~~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|..++.+.+|..+ +++. .. ...+| ....+++|||||-....
T Consensus 140 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 140 GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 4688899999999875 3432 11 22344 23468999999976553
No 264
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.25 E-value=27 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=29.3
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
.+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+...|+.-
T Consensus 143 ~v~i~~~~~~~~~~DGlIVsTPtGSTAY~lSAGG-PIv~P~~~~~~itPI~P 193 (272)
T PRK02231 143 HVYIDDKFAFSQRSDGLIISTPTGSTAYSLSAGG-PILTPNLNAIALVPMFP 193 (272)
T ss_pred EEEECCEEEEEEecCeEEEECCCcHHHHHhhCCC-ceeCCCCCeEEEEeccc
Confidence 3444544 2235899999999888877776654 43333334444555544
No 265
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=28.88 E-value=96 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.007 Sum_probs=27.2
Q ss_pred eeEEcCceeEEEEecCCeEEEEeC------Cc--cccccCEEEEcCCH
Q 041088 4 FSIVRPCWISNLEPFNGMWHLSEN------VK--LRGQFDVVVIAHKG 43 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~w~l~~~------~g--~~~~~D~VIlA~Pa 43 (119)
++++.+ +|+++...+++|.+... +| ....+|.||.|.-.
T Consensus 107 ~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 107 AELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred CEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 456544 68899888888887643 22 23468999999763
No 266
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=28.63 E-value=1.7e+02 Score=23.39 Aligned_cols=48 Identities=4% Similarity=-0.105 Sum_probs=34.9
Q ss_pred eeEEcCceeEEEEecC---CeEEEEeCCccccccCEEEEcCCHHHHHhhcCC
Q 041088 4 FSIVRPCWISNLEPFN---GMWHLSENVKLRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~---~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
+.++-|..|..+.+.+ ....+.+.+|....++.+|+|+-++-.. ||+.
T Consensus 168 ~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 168 VIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred eEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 4578888888887543 3466777777645689999999998754 5664
No 267
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=28.56 E-value=1.3e+02 Score=25.05 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=29.1
Q ss_pred ceeEEcCceeEEEEecCCeEE----EEeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWH----LSENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~----l~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.+.+..++.+.+|..++++.. +...+| ....++.||+|+-...
T Consensus 147 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 147 QIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred CCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 467888999999987666432 222344 2346899999997644
No 268
>PRK08818 prephenate dehydrogenase; Provisional
Probab=28.47 E-value=43 Score=26.42 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=26.4
Q ss_pred CceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCCC
Q 041088 9 PCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGSS 53 (119)
Q Consensus 9 ~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~~ 53 (119)
+..|..+.+.++.|. .. ......+|.||+|+|..+..+++...
T Consensus 29 ~~~V~g~D~~d~~~~-~~-~~~v~~aDlVilavPv~~~~~~l~~l 71 (370)
T PRK08818 29 QLEVIGHDPADPGSL-DP-ATLLQRADVLIFSAPIRHTAALIEEY 71 (370)
T ss_pred CCEEEEEcCCccccC-CH-HHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 445666655433331 00 01123589999999999998887654
No 269
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=28.21 E-value=68 Score=21.17 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=21.8
Q ss_pred ccCEEEEcCCHHHHHhhcCCCCCHHHHHH
Q 041088 33 QFDVVVIAHKGKCANRLLGSSGLPQIARQ 61 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~ 61 (119)
.|+.+||..|+.-+..|.+... +.+.+.
T Consensus 90 ~~~~LvlvA~p~~LG~LR~~L~-~~~~~~ 117 (138)
T PF10116_consen 90 KFDRLVLVAPPRFLGLLREHLS-KAVRKR 117 (138)
T ss_pred CCCeEEEEECHHHHHHHHHHhC-HHHHHH
Confidence 5899999999998888877766 555443
No 270
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=28.07 E-value=85 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=29.2
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHH
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCAN 47 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa 47 (119)
+++|++|+.+..+...+++|.+... .. .+.||.|.|.+..-
T Consensus 209 ~i~v~l~~~~~~~~~~~~~~~~~~~--~~--~~~vi~Tg~id~~f 249 (377)
T TIGR00031 209 LIDVKLNCHINLLKDKDSQLHFANK--AI--RKPVIYTGLIDQLF 249 (377)
T ss_pred CCEEEeCCccceeeccccceeeccc--cc--cCcEEEecCchHHH
Confidence 5789999988888766666766542 21 38899999887743
No 271
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.34 E-value=29 Score=26.61 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=28.9
Q ss_pred EEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 24 LSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 24 l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+...|+..
T Consensus 173 v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGG-PIv~P~~~~~~itPI~P 222 (306)
T PRK03372 173 LEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGG-PVVWPDLEALLVVPLNA 222 (306)
T ss_pred EEECCEEEEEEecCEEEEeCCCchHHHHhhcCC-cccCCCCCeEEEEeccc
Confidence 344544 2235799999999877777776654 43333444455555543
No 272
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=27.25 E-value=72 Score=25.75 Aligned_cols=44 Identities=14% Similarity=-0.020 Sum_probs=27.1
Q ss_pred EEcCceeEEEEecCCeEEEEeCCccccccCEEEEcCCHHHHHhhcCC
Q 041088 6 IVRPCWISNLEPFNGMWHLSENVKLRGQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 6 i~~~~~V~~i~~~~~~w~l~~~~g~~~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
+.++..|..+.. +++ +...+|....+|.||++|--.....+|+.
T Consensus 252 v~~~~~I~~~~~-~g~--V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~ 295 (461)
T PLN02172 252 LWMHSEIDTAHE-DGS--IVFKNGKVVYADTIVHCTGYKYHFPFLET 295 (461)
T ss_pred eEECCcccceec-CCe--EEECCCCCccCCEEEECCcCCccccccCc
Confidence 445555555432 232 55556655569999999876666666654
No 273
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.08 E-value=29 Score=25.78 Aligned_cols=31 Identities=23% Similarity=0.065 Sum_probs=21.2
Q ss_pred EEeCCc--cccccCEEEEcCCHHHHHhhcCCCC
Q 041088 24 LSENVK--LRGQFDVVVIAHKGKCANRLLGSSG 54 (119)
Q Consensus 24 l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~ 54 (119)
+..++. ....+|.||++||.-.++--|..-.
T Consensus 134 v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGG 166 (256)
T PRK14075 134 VSFEDHSSMWFFADGVVISTPTGSTAYSLSLGG 166 (256)
T ss_pred EEECCEEEEEEecCEEEEeCCCchHHHHhhCCC
Confidence 444542 2335899999999888777666544
No 274
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.84 E-value=1.2e+02 Score=24.52 Aligned_cols=40 Identities=5% Similarity=-0.062 Sum_probs=29.2
Q ss_pred ceeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~P 42 (119)
.+++|.++.++++....++ ..+....+....+|.|+.|+-
T Consensus 244 ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG 284 (478)
T KOG0405|consen 244 GINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG 284 (478)
T ss_pred ceeecccccceeeeecCCCceEEEEeccccccccEEEEEec
Confidence 3689999999999988777 444444444445899999973
No 275
>PLN02661 Putative thiazole synthesis
Probab=26.79 E-value=86 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=27.3
Q ss_pred ceeEEcCceeEEEEecCCe-------EEEEe-C--Cc-----cccccCEEEEcCC
Q 041088 3 MFSIVRPCWISNLEPFNGM-------WHLSE-N--VK-----LRGQFDVVVIAHK 42 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~-------w~l~~-~--~g-----~~~~~D~VIlA~P 42 (119)
.+++..++.|..|..++++ |.+.. + ++ ....++.||+||-
T Consensus 187 gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 187 NVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred CCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 5788899999999877664 33221 1 11 1346899999996
No 276
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.07 E-value=1.5e+02 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=28.7
Q ss_pred ceeEEcCceeEEEEec-CCeE-EE---EeCCc--cccccCEEEEcCCHHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGMW-HL---SENVK--LRGQFDVVVIAHKGKCA 46 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~w-~l---~~~~g--~~~~~D~VIlA~Pa~qa 46 (119)
.++|..++.+++|..+ +++. -+ ...+| ....+++||+||-....
T Consensus 157 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 157 HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 4678999999999875 4432 12 22234 23457999999976553
No 277
>PLN02785 Protein HOTHEAD
Probab=26.02 E-value=1.6e+02 Score=24.70 Aligned_cols=50 Identities=2% Similarity=-0.040 Sum_probs=31.9
Q ss_pred cceeEEcCceeEEEEecCC----e---EEEEeCCcc-cc------ccCEEEEcCCHHHHHhhcC
Q 041088 2 SMFSIVRPCWISNLEPFNG----M---WHLSENVKL-RG------QFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 2 ~~~~i~~~~~V~~i~~~~~----~---w~l~~~~g~-~~------~~D~VIlA~Pa~qaa~LL~ 51 (119)
.+++|.++++|++|..+++ + .++...+|. .. ....||+++-+-...+||-
T Consensus 233 ~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~ 296 (587)
T PLN02785 233 NKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296 (587)
T ss_pred CCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHH
Confidence 4789999999999987642 2 233223342 21 2368999987766666553
No 278
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.90 E-value=24 Score=26.56 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=29.1
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
.+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+-..|+..
T Consensus 145 ~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGG-PIv~P~~~~~~ltPI~P 195 (271)
T PRK01185 145 KIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGG-PILLPNLEGMVISYIAP 195 (271)
T ss_pred EEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCC-ceeCCCCCeEEEEeccc
Confidence 4445554 2336899999999888777776654 43333334444444444
No 279
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=25.13 E-value=65 Score=22.91 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=17.4
Q ss_pred cccCEEEEcCCHHHHHhhcCC
Q 041088 32 GQFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~~ 52 (119)
..+|.||+++|+++...++..
T Consensus 67 ~~aDvVilavp~~~~~~~l~~ 87 (219)
T TIGR01915 67 KRADVVILAVPWDHVLKTLES 87 (219)
T ss_pred hcCCEEEEECCHHHHHHHHHH
Confidence 358999999999998887643
No 280
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.81 E-value=1.5e+02 Score=24.54 Aligned_cols=43 Identities=12% Similarity=-0.044 Sum_probs=28.6
Q ss_pred ceeEEcCceeEEEEecC----CeE---EE-EeCCcc--ccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFN----GMW---HL-SENVKL--RGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~----~~w---~l-~~~~g~--~~~~D~VIlA~Pa~q 45 (119)
.++|..++.|.+|..++ ++. .+ ...+|. ...++.||+||-...
T Consensus 154 gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 154 GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 47899999999997654 332 22 222332 346899999987654
No 281
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=24.64 E-value=1.5e+02 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=28.3
Q ss_pred ceeEEcCceeEEEEe-cCCeEE-E---EeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEP-FNGMWH-L---SENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~-~~~~w~-l---~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.++|..++.+.+|.. ++++.. + ...+| ....++.||+||-...
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 468899999999887 444321 2 22334 2446899999996543
No 282
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=23.68 E-value=63 Score=23.72 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.4
Q ss_pred ccCEEEEcCCHHHHHhhcCCC
Q 041088 33 QFDVVVIAHKGKCANRLLGSS 53 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~ 53 (119)
.+|.||+++|+.+...+|...
T Consensus 57 ~~D~Vilavkp~~~~~vl~~i 77 (260)
T PTZ00431 57 TCDIIVLAVKPDLAGKVLLEI 77 (260)
T ss_pred hCCEEEEEeCHHHHHHHHHHH
Confidence 589999999999999888654
No 283
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.09 E-value=38 Score=25.75 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=27.8
Q ss_pred EEEeCCc--cccccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEE
Q 041088 23 HLSENVK--LRGQFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWA 72 (119)
Q Consensus 23 ~l~~~~g--~~~~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~ 72 (119)
.+..++. ....+|.||++||.-.++--|..-. |-+.-.+..+-..|+..
T Consensus 163 ~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGG-Pii~P~~~~~~itPI~P 213 (292)
T PRK03378 163 EVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGG-PILTPSLDAITLVPMFP 213 (292)
T ss_pred EEEECCEEEEEEEccEEEEeCCCchHHhHhhcCC-ceeCCCCCeEEEEeccc
Confidence 3444543 2335899999999886666555544 33333334444444444
No 284
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.86 E-value=1.2e+02 Score=25.27 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=41.9
Q ss_pred eEEcCceeEEEEecCCeEEEEeCC---c--cccccCEEEEcCCHHHH--HhhcCCCCCHHHHHHhhcCCccceEEEEEee
Q 041088 5 SIVRPCWISNLEPFNGMWHLSENV---K--LRGQFDVVVIAHKGKCA--NRLLGSSGLPQIARQMKRLELSSIWALLAAF 77 (119)
Q Consensus 5 ~i~~~~~V~~i~~~~~~w~l~~~~---g--~~~~~D~VIlA~Pa~qa--a~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~ 77 (119)
.|...++|+.+.++++-|.|...+ | ....++.||-|+-++.- .++..... +. ....-|.--+|+.+
T Consensus 180 ~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~-~~------~~~vr~skGsHlVv 252 (532)
T COG0578 180 EILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQ-SP------HIGVRPSKGSHLVV 252 (532)
T ss_pred chhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccC-CC------CccceeccceEEEe
Confidence 467779999999998877665422 2 23468999999976543 33332211 00 02355666667777
Q ss_pred cC
Q 041088 78 ED 79 (119)
Q Consensus 78 ~~ 79 (119)
++
T Consensus 253 ~~ 254 (532)
T COG0578 253 DK 254 (532)
T ss_pred cc
Confidence 66
No 285
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=22.42 E-value=1.6e+02 Score=24.47 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=35.6
Q ss_pred eeEEcCceeEEEEecCCe-EEEEeCCccccccCEEEEcCCHHHH-HhhcCCCC
Q 041088 4 FSIVRPCWISNLEPFNGM-WHLSENVKLRGQFDVVVIAHKGKCA-NRLLGSSG 54 (119)
Q Consensus 4 ~~i~~~~~V~~i~~~~~~-w~l~~~~g~~~~~D~VIlA~Pa~qa-a~LL~~~~ 54 (119)
.+|.++..|.+|..+++. --|...+|.......||.-+..+.+ .+||+...
T Consensus 279 aeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 279 AEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred ceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 468889999999888754 3466677755556777776555555 59998754
No 286
>PRK08507 prephenate dehydrogenase; Validated
Probab=22.07 E-value=75 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.1
Q ss_pred ccCEEEEcCCHHHHHhhcC
Q 041088 33 QFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~ 51 (119)
.+|.||+++|..+..+++.
T Consensus 58 ~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 58 KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred cCCEEEEeCcHHHHHHHHH
Confidence 4899999999998877664
No 287
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=21.80 E-value=1.4e+02 Score=16.00 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=18.0
Q ss_pred ceeEEcCceeEEEEecCCeEEEEeCCcc
Q 041088 3 MFSIVRPCWISNLEPFNGMWHLSENVKL 30 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~w~l~~~~g~ 30 (119)
-+.+..|..|.-+...+++|.....+|.
T Consensus 12 ELs~~~Gd~i~v~~~~~~~W~~g~~~g~ 39 (49)
T PF14604_consen 12 ELSFKKGDVITVLEKSDDGWWYGRNTGR 39 (49)
T ss_dssp B-EB-TTEEEEEEEESSTSEEEEEETTE
T ss_pred EeeEcCCCEEEEEEeCCCCEEEEEECCE
Confidence 3567778888888777888866444443
No 288
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=21.19 E-value=63 Score=27.31 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=26.0
Q ss_pred ceeEEcCceeEEEEecCCe--EEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFNGM--WHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~~~--w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++++..++ |+.|.-.++. +.|.+..|....+++||+||-..-
T Consensus 115 NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 115 NLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred CceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 44444433 4445544443 567777786667899999986543
No 289
>PF05800 GvpO: Gas vesicle synthesis protein GvpO; InterPro: IPR008634 This family consists of archaeal GvpO proteins which are required for gas vesicle synthesis []. The family also contain related sequences from bacteria.; GO: 0031412 gas vesicle organization
Probab=20.96 E-value=1e+02 Score=19.88 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.5
Q ss_pred ceeEEEEecCC-eEEEEe
Q 041088 10 CWISNLEPFNG-MWHLSE 26 (119)
Q Consensus 10 ~~V~~i~~~~~-~w~l~~ 26 (119)
..|.++.++++ ||.+..
T Consensus 39 e~V~~~~~~edgGW~v~V 56 (100)
T PF05800_consen 39 EGVSSVERTEDGGWRVVV 56 (100)
T ss_pred ceEEEEeecCCCCeEEEE
Confidence 46788888877 999875
No 290
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.89 E-value=2.1e+02 Score=23.81 Aligned_cols=43 Identities=9% Similarity=-0.100 Sum_probs=27.9
Q ss_pred ceeEEcCceeEEEEecC-CeE---EE-EeCCc--cccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPFN-GMW---HL-SENVK--LRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~~-~~w---~l-~~~~g--~~~~~D~VIlA~Pa~q 45 (119)
.+++..++.+.+|..++ ++. .+ ...+| ....++.||+|+-...
T Consensus 162 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 162 KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 35788999999988753 332 22 22334 2345899999987654
No 291
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=20.86 E-value=2.2e+02 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=26.9
Q ss_pred ceeEEcCceeEEEEec-CCe-EEEEeCCccccccCEEEEcCCHHH
Q 041088 3 MFSIVRPCWISNLEPF-NGM-WHLSENVKLRGQFDVVVIAHKGKC 45 (119)
Q Consensus 3 ~~~i~~~~~V~~i~~~-~~~-w~l~~~~g~~~~~D~VIlA~Pa~q 45 (119)
++.+..+ .|..+... +++ ..|...+|....+|.||+|+-..-
T Consensus 111 gV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 111 NLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455544 56666554 433 456666665556899999998774
No 292
>PLN02256 arogenate dehydrogenase
Probab=20.68 E-value=73 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.4
Q ss_pred ccCEEEEcCCHHHHHhhcCCC
Q 041088 33 QFDVVVIAHKGKCANRLLGSS 53 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~ 53 (119)
.+|.||+++|+.+...++...
T Consensus 92 ~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 92 HPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred CCCEEEEecCHHHHHHHHHhh
Confidence 479999999999888877654
No 293
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=20.54 E-value=1.2e+02 Score=21.52 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=29.3
Q ss_pred ccccCEEEEcCCHHHHH--hhcCCCCCHHHHHHhhcCCccceEEEEEeecCC
Q 041088 31 RGQFDVVVIAHKGKCAN--RLLGSSGLPQIARQMKRLELSSIWALLAAFEDP 80 (119)
Q Consensus 31 ~~~~D~VIlA~Pa~qaa--~LL~~~~~~~~a~~l~~i~~~p~~~v~l~~~~~ 80 (119)
...||+||++.|-..-. +-+..-- ....+.|...| +..++|+|.++++
T Consensus 45 l~~ydavVIgAsI~~~h~~~~~~~Fv-~k~~e~L~~kP-~A~f~vnl~a~k~ 94 (175)
T COG4635 45 LEDYDAVVIGASIRYGHFHEAVQSFV-KKHAEALSTKP-SAFFSVNLTARKE 94 (175)
T ss_pred hhhCceEEEecchhhhhhHHHHHHHH-HHHHHHHhcCC-ceEEEeehhhccc
Confidence 44699999999965531 1111111 23445666654 5578999998776
No 294
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=20.48 E-value=86 Score=22.37 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=16.8
Q ss_pred ccCEEEEcCCHHHHHhhcCC
Q 041088 33 QFDVVVIAHKGKCANRLLGS 52 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~ 52 (119)
.+|.||+++|+.+..+++..
T Consensus 66 ~~DiViiavp~~~~~~v~~~ 85 (245)
T PRK07634 66 SVDTIVLAMPPSAHEELLAE 85 (245)
T ss_pred cCCEEEEecCHHHHHHHHHH
Confidence 58999999999988877644
No 295
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.46 E-value=48 Score=24.65 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=26.6
Q ss_pred ccCEEEEcCCHHHHHhhcCCCCCHHHHHHhhcCCccceEEE
Q 041088 33 QFDVVVIAHKGKCANRLLGSSGLPQIARQMKRLELSSIWAL 73 (119)
Q Consensus 33 ~~D~VIlA~Pa~qaa~LL~~~~~~~~a~~l~~i~~~p~~~v 73 (119)
..|.||++||.-.++--|..-. |-+.-.++.+...|+...
T Consensus 133 ~gDGlIVSTPtGSTAY~lSAGG-PIv~P~~~~~~itPI~P~ 172 (246)
T PRK04761 133 VCDGVLVATPAGSTAYNLSAHG-PILPLGSNLLALTPISPF 172 (246)
T ss_pred ecCeEEEeCCcCHHHHHhhCCC-cccCCCCCeEEEEeeccc
Confidence 5799999999888888777655 433334444555555443
No 296
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=20.22 E-value=66 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.4
Q ss_pred cccCEEEEcCCHHHHHhhcC
Q 041088 32 GQFDVVVIAHKGKCANRLLG 51 (119)
Q Consensus 32 ~~~D~VIlA~Pa~qaa~LL~ 51 (119)
..+|.||+++++++....++
T Consensus 58 ~~~D~iiv~vKs~~~~~~l~ 77 (293)
T TIGR00745 58 PPADLVIITVKAYQTEEAAA 77 (293)
T ss_pred CCCCEEEEeccchhHHHHHH
Confidence 35899999999998877654
Done!