BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041089
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 204/661 (30%), Positives = 292/661 (44%), Gaps = 87/661 (13%)
Query: 39 KSWNNSINLCQWTG-VTCGHRHQRVTELDLESQNIGG------FLSPYIGNLSFLRVINL 91
K N S N + G V+ G + + LDL + +I G LS G L L +
Sbjct: 126 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI--- 182
Query: 92 ANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAI 151
+ N+ G + +V R LE + +S+N+FS IP L C L + N L G+
Sbjct: 183 SGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 239
Query: 152 IGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSL-GQLRNLNYLG 210
I +L+ L++ NQ G + P L +LQ +A NK G IPD L G L L
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 211 TSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLP 270
S N F G P + S L+ L N F G LP+ + L VL ++ N +G LP
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 271 QSLSN-ASKLEWLELNENHFSGQVRINFNSLPN--LSKLYLGRNNLGTRTSTDLDFITLL 327
+SL+N ++ L L+L+ N+FSG + N P L +LYL N + L
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP------TL 411
Query: 328 TNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGL 387
+NCS+LV L L FN G +P S+ +LS L + N + G IP E+ + L L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL-KLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 388 EYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSY 447
++N LTG IP + NL ++ L N + G IP IG L L IL+L N G+IP+
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 448 LGKCQNLMQLSAPNNQLNGTLPPQIF---------------------------------- 473
LG C++L+ L N NGT+P +F
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 474 ----GITP--LSKL-----LDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLS 522
GI L++L +++ + G N S++ LD+S N S IP +
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 523 ACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSY 582
+ L L + N +GSIP + L+ + LDLS N L G+IP + L L ++LS
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 583 NHFEGEVPKKGVFSNETRISLTGNEQLCGGLGELHLPAC------------HSVGRRKET 630
N+ G +P+ G F N LCG LP C S GRR E
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNADGYAHHQRSHGRRLEN 766
Query: 631 I 631
+
Sbjct: 767 L 767
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 202/699 (28%), Positives = 292/699 (41%), Gaps = 170/699 (24%)
Query: 24 LLAIKSQLQDPLGVTKSWNNSINLCQWTGVTCGHRHQRVTELDLESQ------------- 70
L++ K L D + W+++ N C + GVTC R +VT +DL S+
Sbjct: 14 LISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 70
Query: 71 --------------NIGGFLSPY-------------------------IGNLSFLRVINL 91
+I G +S + +G+ S L+ +N+
Sbjct: 71 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 130
Query: 92 ANN--RFHGQIPKEVGRLFRLETIVLSNNSFSGK--IPTNLSR-CFNLIDFWVHTNNLVG 146
++N F G++ + +L LE + LS NS SG + LS C L + N + G
Sbjct: 131 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
++ + + LE L + N + + P +G+ SALQ DI+GNKL G ++ L
Sbjct: 190 DVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
L S N F G P LP L L L +A+N T
Sbjct: 247 KLLNISSNQFVGPIP---------------------PLP------LKSLQYLSLAENKFT 279
Query: 267 GFLPQSLSNA-SKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFIT 325
G +P LS A L L+L+ NHF G V F S L L L NN S +L T
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDT 335
Query: 326 LLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISG--------------- 370
LL L L L FN F G LP S+ NLS ++ + ++ N SG
Sbjct: 336 LLK-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 371 -----------TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGI 419
IPP + N L L L +N L+GTIP ++G L L+ L L N + G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
IP + + L L L FN L G IPS L C NL +S NN+L G +P I + L+
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTL---------SACTTLEYL 530
+L LS N FSG+IP E+G+ +SL+ LD++ N F+ IP + + Y+
Sbjct: 515 -ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 531 LMQGN-------------SFNGSIPQSLNALK------------------------SIKE 553
++ + F G + LN L S+
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 554 LDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK 592
LD+S N LSG IP + +P+L LNL +N G +P +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 31/153 (20%)
Query: 484 LSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV--TLSACTTLEYLLMQGNS--FNG 539
LS +H +GS+ SL LD+SRN S + +L +C+ L++L + N+ F G
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 540 SIPQSLNALKSIKELDLSCNNLSGQIPI---------HLQDLPF---------------- 574
+ L L S++ LDLS N++SG + L+ L
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 575 LEYLNLSYNHFEGEVPKKGVFSNETRISLTGNE 607
LE+L++S N+F +P G S + ++GN+
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 231
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 194/625 (31%), Positives = 280/625 (44%), Gaps = 74/625 (11%)
Query: 53 VTCGHRHQRVTELDLESQNIGG------FLSPYIGNLSFLRVINLANNRFHGQIPKEVGR 106
V+ G + + LDL + +I G LS G L L + + N+ G + +V R
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV--DVSR 198
Query: 107 LFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN 166
LE + +S+N+FS IP L C L + N L G+ I +L+ L++ N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 167 QLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSL-GQLRNLNYLGTSENDFSGMFPLSVC 225
Q G + P L +LQ +A NK G IPD L G L L S N F G P
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 226 NISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSN-ASKLEWLEL 284
+ S L+ L N F G LP+ + L VL ++ N +G LP+SL+N ++ L L+L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 285 NENHFSGQVRINFNSLPN--LSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNR 342
+ N+FSG + N P L +LYL N + L+NCS+LV L L FN
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP------TLSNCSELVSLHLSFNY 429
Query: 343 FGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGE 402
G +P S+ +LS L + N + G IP E+ + L L L++N LTG IP +
Sbjct: 430 LSGTIPSSLGSLSKLRDL-KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 403 LRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNN 462
NL ++ L N + G IP IG L L IL+L N G+IP+ LG C++L+ L N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 463 QLNGTLPPQIF--------------------------------------GITP--LSKL- 481
NGT+P +F GI L++L
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 482 ----LDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSF 537
+++ + G N S++ LD+S N S IP + + L L + N
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 538 NGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSN 597
+GSIP + L+ + LDLS N L G+IP + L L ++LS N+ G +P+ G F
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 598 ETRISLTGNEQLCGGLGELHLPACH 622
N LCG LP C
Sbjct: 729 FPPAKFLNNPGLCG----YPLPRCD 749
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 202/699 (28%), Positives = 292/699 (41%), Gaps = 170/699 (24%)
Query: 24 LLAIKSQLQDPLGVTKSWNNSINLCQWTGVTCGHRHQRVTELDLESQ------------- 70
L++ K L D + W+++ N C + GVTC R +VT +DL S+
Sbjct: 17 LISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 73
Query: 71 --------------NIGGFLSPY-------------------------IGNLSFLRVINL 91
+I G +S + +G+ S L+ +N+
Sbjct: 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133
Query: 92 ANN--RFHGQIPKEVGRLFRLETIVLSNNSFSGK--IPTNLSR-CFNLIDFWVHTNNLVG 146
++N F G++ + +L LE + LS NS SG + LS C L + N + G
Sbjct: 134 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
++ + + LE L + N + + P +G+ SALQ DI+GNKL G ++ L
Sbjct: 193 DVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
L S N F G P LP L L L +A+N T
Sbjct: 250 KLLNISSNQFVGPIP---------------------PLP------LKSLQYLSLAENKFT 282
Query: 267 GFLPQSLSNA-SKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFIT 325
G +P LS A L L+L+ NHF G V F S L L L NN S +L T
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDT 338
Query: 326 LLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISG--------------- 370
LL L L L FN F G LP S+ NLS ++ + ++ N SG
Sbjct: 339 LLK-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 371 -----------TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGI 419
IPP + N L L L +N L+GTIP ++G L L+ L L N + G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
IP + + L L L FN L G IPS L C NL +S NN+L G +P I + L+
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTL---------SACTTLEYL 530
+L LS N FSG+IP E+G+ +SL+ LD++ N F+ IP + + Y+
Sbjct: 518 -ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 531 LMQGN-------------SFNGSIPQSLNALK------------------------SIKE 553
++ + F G + LN L S+
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 554 LDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK 592
LD+S N LSG IP + +P+L LNL +N G +P +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 31/153 (20%)
Query: 484 LSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV--TLSACTTLEYLLMQGNS--FNG 539
LS +H +GS+ SL LD+SRN S + +L +C+ L++L + N+ F G
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 540 SIPQSLNALKSIKELDLSCNNLSGQIPI---------HLQDLPF---------------- 574
+ L L S++ LDLS N++SG + L+ L
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 575 LEYLNLSYNHFEGEVPKKGVFSNETRISLTGNE 607
LE+L++S N+F +P G S + ++GN+
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 7/251 (2%)
Query: 372 IPPEIRNLFNLNGLGLE-YNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLL 430
IP + NL LN L + N L G IPPAI +L L YL + N+ G IPD + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 431 NILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFS 490
L +N L G++P + NL+ ++ N+++G +P + L + +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 491 GSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKS 550
G IP NL +L +D+SRN + V + + + + NS + + + K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 551 IKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLC 610
+ LDL N + G +P L L FL LN+S+N+ GE+P+ G + N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 611 GGLGELHLPAC 621
G LPAC
Sbjct: 306 GS----PLPAC 312
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 127/310 (40%), Gaps = 62/310 (20%)
Query: 17 NEMDRLALLAIKSQLQDPLGVTKSWNNSINLCQ--WTGVTCGHRHQ--RVTELDLESQNI 72
N D+ ALL IK L +P ++ SW + + C W GV C Q RV LDL N+
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 73 GGFLSPY-----IGNLSFLRVINLAN-NRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPT 126
PY + NL +L + + N G IP + +L +L + +++ + SG IP
Sbjct: 63 P---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP- 118
Query: 127 NLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFD 186
DF LV L N L+G L PSI +L L
Sbjct: 119 ---------DFLSQIKTLV--------------TLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 187 IAGNKLDGRIPDSLGQLRNL-NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLP 245
GN++ G IPDS G L + S N +G P + N+ +L L +N +G
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214
Query: 246 VCLG----------------FNLPKLTV------LVVAQNNLTGFLPQSLSNASKLEWLE 283
V G F+L K+ + L + N + G LPQ L+ L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 284 LNENHFSGQV 293
++ N+ G++
Sbjct: 275 VSFNNLCGEI 284
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 166 NQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVC 225
N L G + P+I L+ L I + G IPD L Q++ L L S N SG P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 226 NISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELN 285
++ +L NR G++P G T + +++N LTG +P + +N + L +++L+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 286 ENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGG 345
N G + F S N K++L +N+L + DL + L N L L L NR G
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGLSKN---LNGLDLRNNRIYG 258
Query: 346 ALPHSIANLSTTMTLIAMAGNQISGTIP 373
LP + L +L ++ N + G IP
Sbjct: 259 TLPQGLTQLKFLHSL-NVSFNNLCGEIP 285
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 165 DNQLTGQLRPSIGNLSALQTF----DIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMF 220
D Q Q++ +GN + L ++ D G + D+ Q +N L S + +
Sbjct: 7 DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66
Query: 221 PL--SVCNISSLDEAYLFK-NRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNAS 277
P+ S+ N+ L+ Y+ N G +P + L +L L + N++G +P LS
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 278 KLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLG 337
L L+ + N SG + + +SLPNL +G
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNL--------------------------------VG 153
Query: 338 LVF--NRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGT 395
+ F NR GA+P S + S T + ++ N+++G IPP NL NL + L N L G
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Query: 396 IPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLM 455
G +N Q + L N++ + +G LN L L N++ G++P L + + L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 456 QLSAPNNQLNGTLP 469
L+ N L G +P
Sbjct: 272 SLNVSFNNLCGEIP 285
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 89 INLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPT--NLSRCFNLIDFWVHTNN 143
++L NNR +G +P+ + +L L ++ +S N+ G+IP NL R D + NN
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR----FDVSAYANN 301
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNN 118
LDL + I G L + L FL +N++ N G+IP+ G L R + +NN
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 128/270 (47%), Gaps = 28/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L N + + P + NLT L L + NK+ S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV--S 186
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 187 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 294
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 295 LEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 198/496 (39%), Gaps = 110/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 98
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 99 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 131
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + N+ P+ NL L L ++ N ++
Sbjct: 132 NRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVS 186
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 187 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 237
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 238 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVS 343
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 344 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 396 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 450
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 451 ----TFSGTVTQPLKA 462
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 128/270 (47%), Gaps = 28/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L N + + P + NLT L L + NK+ S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV--S 186
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 187 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 294
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 295 LEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 198/496 (39%), Gaps = 110/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 98
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 99 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 131
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + N+ P+ NL L L ++ N ++
Sbjct: 132 NRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVS 186
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 187 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 237
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 238 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVS 343
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 344 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 396 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 450
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 451 ----TFSGTVTQPLKA 462
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 128/270 (47%), Gaps = 28/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L N + + P + NLT L L + NK+ S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV--S 186
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 187 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 294
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 295 LEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 198/496 (39%), Gaps = 110/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 98
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 99 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 131
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + N+ P+ NL L L ++ N ++
Sbjct: 132 NRLELSSNTISDISALS--GLTSLQQLNFSSNQVTDLKPLA---NLTTLERLDISSNKVS 186
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 187 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 237
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 238 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVS 343
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 344 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 395
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 396 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 450
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 451 ----TFSGTVTQPLKA 462
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 129/270 (47%), Gaps = 29/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L GN + + P + NLT L L + NK+ S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKV--S 185
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 186 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 237
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 238 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 293
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 294 LEDISPIS--NLKNLTYLTLYFNNISDISP 321
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 199/496 (40%), Gaps = 111/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 98
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 99 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 131
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + F N+ P+ NL L L ++ N ++
Sbjct: 132 NRLELSSNTISDISALS--GLTSLQQLN-FGNQVTDLKPLA---NLTTLERLDISSNKVS 185
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 236
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 237 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVS 342
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 343 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 394
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 395 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 449
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 450 ----TFSGTVTQPLKA 461
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 129/270 (47%), Gaps = 29/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 83 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 137
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L GN + + P + NLT L L + NK+ S
Sbjct: 138 RLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV--S 190
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 191 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 242
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 299 LEDISPIS--NLKNLTYLTLYFNNISDISP 326
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 199/496 (40%), Gaps = 111/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 103
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 104 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 136
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + F N+ P+ NL L L ++ N ++
Sbjct: 137 NRLELSSNTISDISALS--GLTSLQQLS-FGNQVTDLKPLA---NLTTLERLDISSNKVS 190
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 191 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 241
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 242 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVS 347
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 348 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 454
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 455 ----TFSGTVTQPLKA 466
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 129/270 (47%), Gaps = 29/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 82 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 136
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L GN + + P + NLT L L + NK+ S
Sbjct: 137 RLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV--S 189
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 190 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 241
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 242 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 297
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 298 LEDISPIS--NLKNLTYLTLYFNNISDISP 325
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 198/494 (40%), Gaps = 111/494 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 102
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 103 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 135
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + F N+ P+ NL L L ++ N ++
Sbjct: 136 NRLELSSNTISDISALS--GLTSLQQLS-FGNQVTDLKPLA---NLTTLERLDISSNKVS 189
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 190 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 240
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 241 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 293 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVS 346
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 347 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 398
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 399 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 453
Query: 532 MQGNSFNGSIPQSL 545
+F+G++ Q L
Sbjct: 454 ----TFSGTVTQPL 463
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 129/270 (47%), Gaps = 29/270 (10%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
IT L N +KLV + + N+ P +ANL T +T + + NQI+ P ++NL NLN
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L N ++ A+ L +LQ L GN + + P + NLT L L + NK+ S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKV--S 185
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKS- 502
S L K NL L A NNQ I ITPL L +L E +G+ ++G L S
Sbjct: 186 DISVLAKLTNLESLIATNNQ--------ISDITPLGILTNLDELSLNGNQLKDIGTLASL 237
Query: 503 --LVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
L LD++ N SN P LS T L L + N + P L L ++ L+L+ N
Sbjct: 238 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 293
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590
L PI +L L YL L +N+ P
Sbjct: 294 LEDISPIS--NLKNLTYLTLYFNNISDISP 321
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 199/496 (40%), Gaps = 111/496 (22%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
+V L +R + V L L I SNN + P L L+D ++ NN +
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIA 98
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
+I + N L L+L++NQ+T DI D L L NL
Sbjct: 99 DITPL-ANLTNLTGLTLFNNQIT----------------DI----------DPLKNLTNL 131
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
N L S N S + LS ++SL + F N+ P+ NL L L ++ N ++
Sbjct: 132 NRLELSSNTISDISALS--GLTSLQQLN-FGNQVTDLKPLA---NLTTLERLDISSNKVS 185
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITL 326
L+ + LE L N S + L NL +L L N L D+ +
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-----DIGTLAS 236
Query: 327 LTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLG 386
LTN L L L N+ P S T +T + + NQIS P + L L L
Sbjct: 237 LTN---LTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 387 LEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446
L NQL P I L+NL YL L NNI I P + +LT L L NK+ S S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVS 342
Query: 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-----LDLSENHFSG---------S 492
L N+ LSA +N QI +TPL+ L L L++ ++ S
Sbjct: 343 SLANLTNINWLSAGHN--------QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 394
Query: 493 IPLEVGNLK-------------SLVQLDISRN--HFSNEI------PVTLSACTTLEYLL 531
IP V N+ S + DI+ N ++NE+ PVT+ TT
Sbjct: 395 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT----- 449
Query: 532 MQGNSFNGSIPQSLNA 547
+F+G++ Q L A
Sbjct: 450 ----TFSGTVTQPLKA 461
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 111 ETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTG 170
+ I L N S + C NL W+H+N L A LE+L L DN
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 171 QLRPS-------------------------IGNLSALQTFDIAGNKLDGRIPDSLGQLRN 205
+ P+ L+ALQ + N L D+ L N
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 206 LNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNL 265
L +L N S + + + SLD L +NR P +L +L L + NNL
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNL 212
Query: 266 TGFLPQSLSNASKLEWLELNENHFSGQVR 294
+ ++L+ L++L LN+N + R
Sbjct: 213 SALPTEALAPLRALQYLRLNDNPWVCDCR 241
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 255 LTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVR----INFNSLPNLSKLYLGR 310
LT+L + N L + + + LE L+L++N Q+R F+ L L L+L R
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---AQLRSVDPATFHGLGRLHTLHLDR 113
Query: 311 NNLGT------RTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMA 364
L R L ++ L N + ALP +T + +
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQ-------------ALPDDTFRDLGNLTHLFLH 160
Query: 365 GNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI 424
GN+IS R L +L+ L L N++ P A +L L L L NN+ + +++
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 220
Query: 425 GNLTLLNILQLGFN 438
L L L+L N
Sbjct: 221 APLRALQYLRLNDN 234
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 89/251 (35%), Gaps = 26/251 (10%)
Query: 361 IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN-NIRGI 419
I + GN+IS R NL L L N L A L L+ L L N +R +
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
P + L L+ L L LQ P L L +N L LP F
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR----- 149
Query: 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539
++GNL L + N S+ +L+ LL+ N
Sbjct: 150 ----------------DLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 190
Query: 540 SIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNET 599
P + L + L L NNLS L L L+YL L+ N + + + +++
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 250
Query: 600 RISLTGNEQLC 610
+ + +E C
Sbjct: 251 KFRGSSSEVPC 261
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 107 LFR----LETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162
LFR L+ + L +N+ NL ++H N + + L+RL
Sbjct: 123 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 182
Query: 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPL 222
L+ N++ + +L L T + N L ++L LR L YL ++N +
Sbjct: 183 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW------ 236
Query: 223 SVCNISSLDEAYLFKNRFKGS---LPVCLGFNLPKLTVLVVAQNNLTG 267
VC+ + + + +F+GS +P L L + +A N+L G
Sbjct: 237 -VCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 282
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 86/239 (35%), Gaps = 31/239 (12%)
Query: 176 IGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
+G +A Q + GN++ S RNL L N + + + ++ L++ L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N S+ L +L L + + L P + L++L L +N
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 296 NFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLS 355
F L NL+ L+L N + + + L +L L NR PH+ +L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGL------HSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
MTL A NL+ L E A+ LR LQYL L N
Sbjct: 201 RLMTLYLFAN---------------NLSALPTE----------ALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 111 ETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTG 170
+ I L N S + C NL W+H+N L A LE+L L DN
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 171 QLRPS-------------------------IGNLSALQTFDIAGNKLDGRIPDSLGQLRN 205
+ P+ L+ALQ + N L D+ L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 206 LNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNL 265
L +L N S + + + SLD L +NR P +L +L L + NNL
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNL 213
Query: 266 TGFLPQSLSNASKLEWLELNENHFSGQVR 294
+ ++L+ L++L LN+N + R
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCR 242
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 255 LTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVR----INFNSLPNLSKLYLGR 310
LT+L + N L + + + LE L+L++N Q+R F+ L L L+L R
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---AQLRSVDPATFHGLGRLHTLHLDR 114
Query: 311 NNLGT------RTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMA 364
L R L ++ L N + ALP +T + +
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQ-------------ALPDDTFRDLGNLTHLFLH 161
Query: 365 GNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI 424
GN+IS R L +L+ L L N++ P A +L L L L NN+ + +++
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Query: 425 GNLTLLNILQLGFN 438
L L L+L N
Sbjct: 222 APLRALQYLRLNDN 235
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 107 LFR----LETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162
LFR L+ + L +N+ NL ++H N + + L+RL
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPL 222
L+ N++ + +L L T + N L ++L LR L YL ++N +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW------ 237
Query: 223 SVCNISSLDEAYLFKNRFKGS---LPVCLGFNLPKLTVLVVAQNNLTG 267
VC+ + + + +F+GS +P L L + +A N+L G
Sbjct: 238 -VCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 89/251 (35%), Gaps = 26/251 (10%)
Query: 361 IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN-NIRGI 419
I + GN+IS R NL L L N L A L L+ L L N +R +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
P + L L+ L L LQ P L L +N L LP F
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR----- 150
Query: 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539
++GNL L + N S+ +L+ LL+ N
Sbjct: 151 ----------------DLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 540 SIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNET 599
P + L + L L NNLS L L L+YL L+ N + + + +++
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251
Query: 600 RISLTGNEQLC 610
+ + +E C
Sbjct: 252 KFRGSSSEVPC 262
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 86/239 (35%), Gaps = 31/239 (12%)
Query: 176 IGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
+G +A Q + GN++ S RNL L N + + + ++ L++ L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N S+ L +L L + + L P + L++L L +N
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 296 NFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLS 355
F L NL+ L+L N + + + L +L L NR PH+ +L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGL------HSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
MTL A NL+ L E A+ LR LQYL L N
Sbjct: 202 RLMTLYLFAN---------------NLSALPTE----------ALAPLRALQYLRLNDN 235
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 101/247 (40%), Gaps = 34/247 (13%)
Query: 350 SIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYL 409
S +N ++ + ++ +IP N L L+ N + LR+L+ L
Sbjct: 11 SCSNQASRVICTRRELAEVPASIP------VNTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 410 GLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS----YLGKCQNLMQLSAPNNQLN 465
L N +R I + L LN L+L N+L ++P+ YL K L +L NN +
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSK---LRELWLRNNPIE 120
Query: 466 GTLPPQIFGITPLSKLLDL---------SENHFSGSIPLEVGNLKSLVQLDISRNHFSNE 516
++P F P + LDL SE F G + L NL DI
Sbjct: 121 -SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP------- 172
Query: 517 IPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLE 576
L+A LE L + GN + P S L S+++L L ++ DL LE
Sbjct: 173 ---NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 577 YLNLSYN 583
LNLS+N
Sbjct: 230 ELNLSHN 236
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 21/275 (7%)
Query: 169 TGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNIS 228
TG P+ + S + I + +P S+ N YL EN + + ++
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLR 59
Query: 229 SLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH 288
L+ L KN + + V LP L L + N LT Q+ SKL L L N
Sbjct: 60 HLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 289 FSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRF---GG 345
FN +P+L +L LG L++I S+ GLV R+ G
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGE-------LKRLEYI------SEAAFEGLVNLRYLNLGM 165
Query: 346 ALPHSIANLSTTMTL--IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403
I NL+ + L + ++GN++ P + L +L L L + Q+ A +L
Sbjct: 166 CNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 404 RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438
++L+ L L NN+ + D L L + L N
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 141 TNNLVGEIQAIIGNWL-KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG----- 194
+ NLV +I+ N L L L L+DN+LT + LS L+ + N ++
Sbjct: 67 SKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA 126
Query: 195 --RIPD----SLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCL 248
R+P LG+L+ L Y+ SE F G+ L N+ +C
Sbjct: 127 FNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLG-----------------MCN 167
Query: 249 GFNLPKLTVLV------VAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPN 302
++P LT LV ++ N L P S + L L L + R F+ L +
Sbjct: 168 LKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 303 LSKLYLGRNNL 313
L +L L NNL
Sbjct: 228 LEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 367 QISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGN 426
++ +IP N L L+ N + LR+L+ L L N +R I +
Sbjct: 28 EVPASIP------VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 427 LTLLNILQLGFNKLQGSIPS----YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLL 482
L LN L+L N+L ++P+ YL K L +L NN + ++P F P + L
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSK---LRELWLRNNPIE-SIPSYAFNRVPSLRRL 136
Query: 483 DL---------SENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQ 533
DL SE F G + L NL DI L+A LE L +
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP----------NLTALVRLEELELS 186
Query: 534 GNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHF 585
GN + P S L S+++L L ++ DL LE LNLS+N+
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 21/275 (7%)
Query: 169 TGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNIS 228
TG P+ + S + I + +P S+ N YL EN + + ++
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLR 59
Query: 229 SLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH 288
L+ L KN + + V LP L L + N LT Q+ SKL L L N
Sbjct: 60 HLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 289 FSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRF---GG 345
FN +P+L +L LG L++I S+ GLV R+ G
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGE-------LKRLEYI------SEAAFEGLVNLRYLNLGM 165
Query: 346 ALPHSIANLSTTMTL--IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403
I NL+ + L + ++GN++ P + L +L L L + Q+ A +L
Sbjct: 166 CNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 404 RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438
++L+ L L NN+ + D L L + L N
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 141 TNNLVGEIQAIIGNWL-KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG----- 194
+ NLV +I+ N L L L L+DN+LT + LS L+ + N ++
Sbjct: 67 SKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA 126
Query: 195 --RIPD----SLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCL 248
R+P LG+L+ L Y+ SE F G+ L N+ +C
Sbjct: 127 FNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLG-----------------MCN 167
Query: 249 GFNLPKLTVLV------VAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPN 302
++P LT LV ++ N L P S + L L L + R F+ L +
Sbjct: 168 LKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 303 LSKLYLGRNNL 313
L +L L NNL
Sbjct: 228 LEELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 185/464 (39%), Gaps = 61/464 (13%)
Query: 60 QRVTELDLESQNIGG-FLSPYIGNLSFLRVINLANNRFHGQIPKEVGRL--FRLETIVLS 116
+ +T LDL I +L P G L+ L+ I+ ++N+ E+ L L L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 117 NNSFSGKIPTNLSRCFN-----------------LIDFWVHTNNLVGEIQA--------I 151
NS ++ + +C N +D + +N + + QA I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 152 IGNWLKLERLSLYD-NQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYL- 209
+G + D N G R S+ +L F + L+ R+ ++L L+ LN
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRVFETLKDLKVLNLAY 299
Query: 210 ----GTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNL 265
++ F G+ L V N+S L+ + F G LPK+ + + +N++
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG---------LPKVAYIDLQKNHI 350
Query: 266 TGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFIT 325
Q+ KL+ L+L +N + I+F +P++ ++L N L T +L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTT---IHF--IPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 326 LLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGL 385
+ + ++L L +++ F +PH + + +G+Q P + N L
Sbjct: 406 IHLSENRLENLDILY--FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 386 GLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIP 445
L + T L +LQ L L N + + P +LT L L L N+L ++
Sbjct: 464 QLAWE--TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVL 519
Query: 446 SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHF 489
S+ NL L NQL P ++ +LD++ N F
Sbjct: 520 SHNDLPANLEILDISRNQLLAPNPDVFVSLS----VLDITHNKF 559
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 104/278 (37%), Gaps = 33/278 (11%)
Query: 358 MTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIR 417
+ ++ +A N+I+ L NL L L YN L L + Y+ L N+I
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 418 GIIPDSIGNLTLLNILQLGFNKLQG-----SIPSYLGKCQNLMQLSAPN----------N 462
I + L L L L N L SIP L+ L N N
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411
Query: 463 QLNGTLPPQIFGITPLSKLLDLSENHFSG----SIPLEVGNLKSLVQLDISRNHFSNEIP 518
+L P ++L L++N FS P E SL QL + N
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN---PSLEQLFLGENMLQLAWE 468
Query: 519 VTL-----SACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLP 573
L + L+ L + N N P + L +++ L L+ N L+ + DLP
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLP 525
Query: 574 F-LEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLC 610
LE L++S N P VF + + + +T N+ +C
Sbjct: 526 ANLEILDISRNQLLA--PNPDVFVSLSVLDITHNKFIC 561
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 4/181 (2%)
Query: 335 KLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEI-RNLFNLNGLGLEYNQLT 393
KL L N+ +LP + T + L+ + N++ T+P I + L NL L + N+L
Sbjct: 41 KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 394 GTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQN 453
+L NL L L N ++ + P +LT L L LG+N+LQ K +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 454 LMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHF 513
L +L NNQL +P F K L L N +L+ L L + N +
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
Query: 514 S 514
Sbjct: 218 D 218
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 7/172 (4%)
Query: 243 SLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPN 302
SLP L KL +L + N L LE L + +N F+ L N
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 303 LSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIA 362
L++L L RN L + D +T KL L L +N +LP + + T++ +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNEL-QSLPKGVFDKLTSLKELR 163
Query: 363 MAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
+ NQ+ L L L L+ NQL A L L+ L L N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 282 LELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFN 341
L+L N S F+ L L LYL N L T + + L L + N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETLWVTDN 95
Query: 342 RFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIG 401
+ ALP + + + + + NQ+ P +L L L L YN+L
Sbjct: 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 402 ELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQ 441
+L +L+ L L N ++ + + LT L L+L N+L+
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 9/193 (4%)
Query: 368 ISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNL 427
I IP + + L L+ N+L+ A L L+ L L N ++ + L
Sbjct: 31 IPSNIPADTKKL------DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 428 TLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSEN 487
L L + NKLQ + NL +L NQL +LPP++F L L N
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143
Query: 488 HFSGSIPLEV-GNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLN 546
S+P V L SL +L + N T L+ L + N + +
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 547 ALKSIKELDLSCN 559
+L+ +K L L N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 26/181 (14%)
Query: 62 VTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFS 121
+LDL+S + S L+ LR++ L +N+ L LET+ +++N
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 122 GKIPTNLSRCFNLIDFWVHTNNL--------------------VGEIQA----IIGNWLK 157
+ NL + + N L E+Q+ +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPD-SLGQLRNLNYLGTSENDF 216
L+ L LY+NQL + L+ L+T + N+L R+P+ + L L L EN +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQENPW 217
Query: 217 S 217
Sbjct: 218 D 218
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 70/188 (37%), Gaps = 3/188 (1%)
Query: 124 IPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQ 183
IP+N+ +D + +N L KL L L DN+L L L+
Sbjct: 31 IPSNIPADTKKLD--LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 184 TFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGS 243
T + NKL QL NL L N + P +++ L L N + S
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 244 LPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNL 303
LP + L L L + N L + ++L+ L+L+ N F+SL L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 304 SKLYLGRN 311
L L N
Sbjct: 208 KMLQLQEN 215
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 121/315 (38%), Gaps = 63/315 (20%)
Query: 269 LPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN----NLGTRTSTDLDFI 324
LP + + L+ L LN N F +IN S P+L LY+ N +LGTR +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRC------L 345
Query: 325 TLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNG 384
L N KL L HS S L +++NL +L
Sbjct: 346 EKLENLQKL------------DLSHSDIEASDCCNL--------------QLKNLRHLQY 379
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDS-IGNLTLLNILQLGFNKLQGS 443
L L YN+ G A E L+ L + ++ P S NL LL +L L L S
Sbjct: 380 LNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS 439
Query: 444 IPSYLGKCQNLMQLSAPNNQL-NGTLPP----QIFG-----ITPLSKLLDLSENHFSGSI 493
L Q+L L+ N +G++ Q+ G I LL + + F G
Sbjct: 440 NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG-- 497
Query: 494 PLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALK---- 549
L+++ LD+S N + + LS L YL M N+ P L AL
Sbjct: 498 ------LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSI 550
Query: 550 ---SIKELDLSCNNL 561
S LD +C+N+
Sbjct: 551 INLSHNPLDCTCSNI 565
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 24/294 (8%)
Query: 331 SKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGN-----QISGTIPPEIRNLF---NL 382
+++ +L L G LP I +++ L+ A + QI+ P +R+L+ N+
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 383 NGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRG--IIPDSIGNLTLLNILQLGFNKL 440
L L GT + +L NLQ L L ++I + NL L L L +N+
Sbjct: 336 RKLDL------GT--RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 441 QGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNL 500
G +C L L L+ P F L ++L+LS S + L
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 501 KSLVQLDISRNHFSN-EIPVT--LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLS 557
+ L L++ N F + I T L +LE L++ + Q+ + L+++ LDLS
Sbjct: 448 QDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 558 CNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPK-KGVFSNETRISLTGNEQLC 610
N+L+G L L L YLN++ N+ P S ++ I+L+ N C
Sbjct: 508 HNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDC 560
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI--GNLTLLNILQLGFNKLQG 442
L N T ++ L+ LQ L L N ++ ++ N++ L L + N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 443 SIPSYLGKC---QNLMQLSAPNNQLNGT----LPPQIFGITPLSKLLDLSENHFSGSIPL 495
+Y C ++++ L+ +N L G+ LPP++ K+LDL N SIP
Sbjct: 418 H--AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV-------KVLDLHNNRI-MSIPK 467
Query: 496 EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIP 542
+V +L++L +L+++ N + T+L+Y+ + N ++ + P
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 184/488 (37%), Gaps = 84/488 (17%)
Query: 157 KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDF 216
+ + LSL N ++ P I LS L+ ++ N++ ++L YL S N
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 217 SGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGF-NLPKLTV--LVVAQNNLTGFLPQSL 273
+S C ++SL L N F LPVC F NL KLT L A+ LP +
Sbjct: 113 QN---ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 274 SNASKLEWLELNENHFSGQVRINFNSLPNLSKLYL--------------GRNNLGTRTST 319
+ S + L+L H G + +PN + L+L N LG +
Sbjct: 169 LHLSCI-LLDLVSYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 320 DLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNL 379
++ NC +L+ R L ++ ++ TT ++ Q P E N+
Sbjct: 227 NIKLND--ENCQRLMTFLSELTRGPTLLNVTLQHIETTWK-CSVKLFQFFWPRPVEYLNI 283
Query: 380 FN------------------LNGLGLEY--NQL----TGTIPPAIGELRNLQYLGLVGNN 415
+N L L +E+ NQ+ + E+ N++ L +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM-NIKMLSISDTP 342
Query: 416 -IRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG 474
I + P S + T LN Q F S C L +L Q NG
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGL------- 389
Query: 475 ITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHF-SNEIPVTLSACTTLEYLLMQ 533
+N F + L N+ SL LD+S N S+ T + ++ L +
Sbjct: 390 -----------KNFF--KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 534 GNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKG 593
N GS+ + L +K LDL NN IP + L L+ LN++ N + VP G
Sbjct: 437 SNMLTGSVFRCLPP--KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLKS-VP-DG 491
Query: 594 VFSNETRI 601
VF T +
Sbjct: 492 VFDRLTSL 499
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 2/181 (1%)
Query: 111 ETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTG 170
+ I L N S + C NL W+H+N L G A LE+L L DN
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 171 QLRP-SIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISS 229
+ P + L L T + L P L L YL +N+ + + ++ +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 230 LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF 289
L +L NR S+P L L L++ QN++ P + + +L L L N+
Sbjct: 154 LTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 290 S 290
S
Sbjct: 213 S 213
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 14/188 (7%)
Query: 255 LTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI----NFNSLPNLSKLYLGR 310
LT+L + N L G + + + LE L+L++N Q+R+ F L +L L+L R
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN---AQLRVVDPTTFRGLGHLHTLHLDR 113
Query: 311 NNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISG 370
L L + L L L N ALP + +T + + GN+I
Sbjct: 114 CGLQELGPG------LFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 371 TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLL 430
R L +L+ L L N + P A +L L L L NN+ + + + L L
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSL 226
Query: 431 NILQLGFN 438
L+L N
Sbjct: 227 QYLRLNDN 234
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 27/210 (12%)
Query: 329 NCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLE 388
+C L L L N G + L+ L Q+ P R L +L+ L L+
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 389 YNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYL 448
L P L LQYL L NN++ + ++ +L L L L N+ IPS
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR----IPS-- 166
Query: 449 GKCQNLMQLSAPNNQLNGTLPPQIF-GITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLD 507
+P F G+ L +LL L +NH + P +L L+ L
Sbjct: 167 -------------------VPEHAFRGLHSLDRLL-LHQNHVARVHPHAFRDLGRLMTLY 206
Query: 508 ISRNHFSNEIPVTLSACTTLEYLLMQGNSF 537
+ N+ S L +L+YL + N +
Sbjct: 207 LFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 91/251 (36%), Gaps = 26/251 (10%)
Query: 361 IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN-NIRGI 419
I + GN+IS ++ NL L L N L G A L L+ L L N +R +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
P + L L+ L L LQ P L L +N L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA------------- 142
Query: 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539
L +N F ++GNL L + N + +L+ LL+ N
Sbjct: 143 ----LPDNTFR-----DLGNLTHLF---LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVAR 190
Query: 540 SIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNET 599
P + L + L L NNLS L L L+YL L+ N + + + +++
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQ 250
Query: 600 RISLTGNEQLC 610
+ + +E C
Sbjct: 251 KFRGSSSEVPC 261
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 107 LFR----LETIVLSNNSFSGKIPTNLSRCF-NLIDFWVHTNNLVGEIQAIIGNWLKLERL 161
LFR L+ + L +N+ +P N R NL ++H N + + L+RL
Sbjct: 123 LFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRL 181
Query: 162 SLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221
L+ N + + +L L T + N L + L LR+L YL ++N +
Sbjct: 182 LLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW----- 236
Query: 222 LSVCNISSLDEAYLFKNRFKGS 243
VC+ + + + +F+GS
Sbjct: 237 --VCDCRA-RPLWAWLQKFRGS 255
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 343 FGGALPHSIANLS--TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAI 400
GG H I+ L T +T + + GNQ+ L NL L L NQL
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 401 GELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAP 460
+L NL YL L N ++ + LT L L L +N+LQ K L L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 461 NNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494
NQL ++P +F + + L +N + + P
Sbjct: 190 QNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 33/194 (17%)
Query: 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSA 459
I L N++YL L GN + I ++ LT L L L N+LQ K NL +L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 460 PNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEV-GNLKSLVQLDISRNHFSNEIP 518
NQL +LP +F L+L+ N S+P V L +L +LD+S N
Sbjct: 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ---- 170
Query: 519 VTLSACTTLEYLLMQGNSFNGSIPQSL-NALKSIKELDLSCNNLSGQIPIHLQD-LPFLE 576
S+P+ + + L +K+L L N L +P + D L L+
Sbjct: 171 ---------------------SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ 208
Query: 577 YLNLSYNHFEGEVP 590
Y+ L N ++ P
Sbjct: 209 YIWLHDNPWDCTCP 222
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 520 TLSACTTLEYLLMQGNSFNGSIPQSL-NALKSIKELDLSCNNLSGQIPIHLQDLPFLEYL 578
L T L YL++ GN S+P + + L ++KEL L N L L L YL
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 579 NLSYNHFEGEVPKKGVF---SNETRISLTGNE 607
NL++N + +P KGVF +N T + L+ N+
Sbjct: 139 NLAHNQLQS-LP-KGVFDKLTNLTELDLSYNQ 168
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311
L LT L++ N L + L+ L L EN F+ L NL+ L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 312 NLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGT 371
L + D +T LT +L L +N+ +LP + + T + + + NQ+
Sbjct: 144 QLQSLPKGVFDKLTNLT------ELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 372 IPPEIRNLFNLNGLGLEYNQLTGTIP--PAIGELRNLQYLGLVGNNIRGIIPDS 423
L +L + L N T P + E N ++ G+V N+ + PDS
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN-KHSGVVRNSAGSVAPDS 249
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 343 FGGALPHSIANLS--TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAI 400
GG H I+ L T +T + + GNQ+ L NL L L NQL
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 401 GELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAP 460
+L NL YL L N ++ + LT L L L N+LQ K L QLS
Sbjct: 130 DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN 189
Query: 461 NNQLNGTLPPQIF 473
+NQL ++P +F
Sbjct: 190 DNQLK-SVPDGVF 201
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 361 IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGII 420
+A+ GN++ ++ L NL L L NQL +L NL+ L LV N ++ +
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL- 124
Query: 421 PDSI-GNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479
PD + LT L L L N+LQ K NL +L NNQL +LP +F
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQL 183
Query: 480 KLLDLSENHFSGSIPLEV-GNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
K L L++N S+P V L SL + + N + AC+ + YL
Sbjct: 184 KQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNNPWD-------CACSDILYL 227
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 300 LPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMT 359
LPN+ L LG N L D+ + LTN + L+ G N+ +LP+ + + T +
Sbjct: 62 LPNVRYLALGGNKLH-----DISALKELTNLTYLILTG---NQLQ-SLPNGVFDKLTNLK 112
Query: 360 LIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGI 419
+ + NQ+ L NL L L +NQL +L NL L L N ++ +
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 420 IPDSIGNLTLLNILQLGFNKLQGSIPS 446
LT L L L N+L+ S+P
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLK-SVPD 198
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 114 VLSNNSFSGKIPTNLSRC----------FNLIDFWVHTNNLVGEIQAIIGNWL-KLERLS 162
+ +++F+ I NL + N ID + N+ + +Q I +L + L+
Sbjct: 12 IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI--QYLPNVRYLA 69
Query: 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPL 222
L N+L ++ L+ L + GN+L +L NL L EN +
Sbjct: 70 LGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 223 SVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWL 282
+++L YL+ N+ + SLP + L LT L + N L ++L+ L
Sbjct: 128 VFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Query: 283 ELNENHFSGQVRINFNSLPNLSKLYLGRN 311
LN+N F+ L +L+ ++L N
Sbjct: 187 SLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 521 LSACTTLEYLLMQGNSFNGSIPQSL-NALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLN 579
L T L YL++ GN S+P + + L ++KEL L N L L L YL
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 580 LSYNHFEGEVPKKGVF---SNETRISLTGNE 607
L +N + +P KGVF +N TR+ L N+
Sbjct: 140 LYHNQLQS-LP-KGVFDKLTNLTRLDLDNNQ 168
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSI 444
L L NQ+ + LR+L+ L L N+IR I + L LN L+L N+L +I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127
Query: 445 PS----YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDL---------SENHFSG 491
P+ YL K L +L NN + ++P F P + LDL SE F G
Sbjct: 128 PNGAFVYLSK---LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 492 SIPL-----------EVGNLKSLV---QLDISRNHFSNEIPVTLSACTTLEYLLMQGNSF 537
L E+ NL L+ +LD+S NH S P + L+ L M +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 538 NGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHF 585
+ + L+S+ E++L+ NNL+ L LE ++L +N +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-------RIPD----SLGQLRNL 206
L L L+DN+LT + LS L+ + N ++ RIP LG+L+ L
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLV------V 260
+Y+ SE F G+ L N++ +C +P LT L+ +
Sbjct: 174 SYI--SEGAFEGLSNLRYLNLA-----------------MCNLREIPNLTPLIKLDELDL 214
Query: 261 AQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNL 313
+ N+L+ P S L+ L + ++ R F++L +L ++ L NNL
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLN 383
+T L N +K+ +L L N +IA L + TL + QI+ P + L NL
Sbjct: 84 LTPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTL-DLTSTQITDVTP--LAGLSNLQ 138
Query: 384 GLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
L L+ NQ+T P + L NLQYL + N + + P + NL+ L L+ NK+
Sbjct: 139 VLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDI 194
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLP 469
P L NL+++ +NQ++ P
Sbjct: 195 SP--LASLPNLIEVHLKDNQISDVSP 218
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 32/132 (24%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLE----VGNLKSLVQLDISRNHFSNEIPVT------ 520
QI +TPL L ++E SG+ PL+ + L+S+ LD++ ++ P+
Sbjct: 80 QITDLTPLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 138
Query: 521 --------------LSACTTLEYLLMQGNSFNGSIP-QSLNALKSIKELDLSCNNLS--- 562
L+ T L+YL + N N P +L+ L +++ D +++S
Sbjct: 139 VLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPLA 198
Query: 563 ---GQIPIHLQD 571
I +HL+D
Sbjct: 199 SLPNLIEVHLKD 210
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 54/229 (23%)
Query: 405 NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQ----------------------- 441
N +YL L+ NNI+ I D+ +L L +LQLG N ++
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 442 GSIPS----YLGKCQNLMQLSAPNNQLNGTLPPQIFGITP---------LSKLLDLSENH 488
IPS YL K L +L NN + ++P F P L KL +SE
Sbjct: 136 TVIPSGAFEYLSK---LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 489 FSGSIPL-----------EVGNLKSLV---QLDISRNHFSNEIPVTLSACTTLEYLLMQG 534
F G L ++ NL LV +L++S NHF P + ++L+ L +
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 535 NSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYN 583
+ + + + L S+ EL+L+ NNLS L +L L+L +N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 21/296 (7%)
Query: 185 FDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244
D+ N++ D +L L +EN S + P + N+ +L L NR K +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 245 PVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLS 304
P+ + L LT L +++N + L + L+ LE+ +N F+ L +L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 305 KLYLGRNNLGTRTSTDLDFITLLT---------------NCSKLVKLGLVFNRFGGALPH 349
+L L + NL + + L + L + +L +L ++ L
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 350 SIANLSTTMTLIAMAGNQISGTIPP--EIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQ 407
N + L +++ + T P +R+L L L L YN ++ + EL LQ
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 408 YLGLVGNNIRGIIPDSIGNLTLLNILQLGFNK---LQGSIPSYLGKCQNLMQLSAP 460
+ LVG + + P + L L +L + N+ L+ S+ +G + L+ S P
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 152/392 (38%), Gaps = 45/392 (11%)
Query: 225 CNISSLDEAYL-FKNRFKGSLPVCLGFNLPKLTVLV-VAQNNLTGFLPQSLSNASKLEWL 282
C S+ D A L + RF V + +P T L+ + +N + ++ LE L
Sbjct: 7 CECSAQDRAVLCHRKRF-----VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 283 ELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNR 342
ELNEN S FN+L NL L L N L KL+ LG+
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRL------------------KLIPLGV---- 99
Query: 343 FGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGE 402
F G + +T + ++ N+I + ++L+NL L + N L A
Sbjct: 100 FTGL---------SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 403 LRNLQYLGLVGNNIRGIIPDSIGN---LTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSA 459
L +L+ L L N+ I +++ + L +L + L N ++ L + + L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 460 PNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV 519
P L+ P ++G+ S L ++ + + L V +L L L++S N S
Sbjct: 211 P--YLDTMTPNCLYGLNLTS--LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 520 TLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLN 579
L L+ + + G P + L ++ L++S N L+ + LE L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
Query: 580 LSYNHFEGEVPKKGVFSNETRISLTGNEQLCG 611
L N + VF R++ + C
Sbjct: 327 LDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA 358
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 124/334 (37%), Gaps = 44/334 (13%)
Query: 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVG 146
R+++L NR E LE + L+ N S P + FNL + +N
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--- 91
Query: 147 EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206
LKL L ++ TG LS L DI+ NK+ + L NL
Sbjct: 92 ---------LKLIPLGVF----TG--------LSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT 266
L +ND + + ++SL++ L K S+P +L L VL + N+
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189
Query: 267 GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNN------LGTRTSTD 320
S +L+ LE++ + + N NL+ L + N L R
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249
Query: 321 LDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLF 380
L F+ L N ++ G++ H + L I + G Q++ P R L
Sbjct: 250 LRFLNLSYNPISTIE---------GSMLHELLRLQE----IQLVGGQLAVVEPYAFRGLN 296
Query: 381 NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
L L + NQLT + NL+ L L N
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 282 LELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFN 341
L L++N + F+SL NL +LYLG N LG D +T LT L L N
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT------VLDLGTN 98
Query: 342 RFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIG 401
+ LP ++ + + + M N+++ +P I L +L L L+ NQL A
Sbjct: 99 QL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 402 ELRNLQYLGLVGN 414
L +L + L GN
Sbjct: 157 RLSSLTHAYLFGN 169
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 97 HGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWL 156
H +P G + + L +N + P NL + ++ +N L + +
Sbjct: 31 HASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 157 KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDF 216
+L L L NQLT L L+ + NKL +P + +L +L +L +N
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Query: 217 SGMFPLSVCNISSLDEAYLFKN 238
+ + +SSL AYLF N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 352 ANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAI-GELRNLQYLG 410
A + T ++ + NQI+ P +L NL L L NQL G +P + L L L
Sbjct: 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94
Query: 411 LVGNNIRGIIPDSI-GNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQL 464
L G N ++P ++ L L L + NKL +P + + +L L+ NQL
Sbjct: 95 L-GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 381 NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI-GNLTLLNILQLGFNK 439
N L L NQ+T P L NL+ L L G+N G +P + +LT L +L LG N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 440 LQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494
L + + +L +L N+L LP I +T L+ L L +N SIP
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA-LDQNQLK-SIP 151
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 205 NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNN 264
N L +N + + P ++ +L E YL N+ G+LPV + +L +LTVL + N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 265 LTGF-----------------------LPQSLSNASKLEWLELNENHFSGQVRINFNSLP 301
LT LP+ + + L L L++N F+ L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 302 NLSKLYLGRN 311
+L+ YL N
Sbjct: 160 SLTHAYLFGN 169
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 474 GITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV-TLSACTTLEYLLM 532
GI +++L L +N + P +L +L +L + N +PV + T L L +
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95
Query: 533 QGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK 592
N + L +KEL + CN L+ ++P ++ L L +L L N + +P
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP-H 152
Query: 593 GVF---SNETRISLTGNEQLC 610
G F S+ T L GN C
Sbjct: 153 GAFDRLSSLTHAYLFGNPWDC 173
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 257 VLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTR 316
+L + N +T P + L+ L L N F+SL L+ L LG N L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 317 TSTDLDFIT----LLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTI 372
S D + L C+KL + LP I L T +T +A+ NQ+ +I
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTE-----------LPRGIERL-THLTHLALDQNQLK-SI 150
Query: 373 P 373
P
Sbjct: 151 P 151
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 124/311 (39%), Gaps = 51/311 (16%)
Query: 203 LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQ 262
L NL YL + N + + PLS N+ L Y+ N+ + NL L L + +
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNE 119
Query: 263 NNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLD 322
+N++ P L+N +K L L NH N + L LS G N L T T + +
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANH-------NLSDLSPLSNXT-GLNYL-TVTESKVK 168
Query: 323 FITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNL 382
+T + N + L L L +N+ P +A+L++ A NQI+ P + N L
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV-NQITDITP--VANXTRL 223
Query: 383 NGLGLEYNQLTGTIP--------------------PAIGELRNLQYLGLVGNNIRGIIPD 422
N L + N++T P A+ +L L+ L + N I I
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI--S 281
Query: 423 SIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLL 482
+ NL+ LN L L N+L +G NL L N I I PL+ L
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN--------HITDIRPLASLS 333
Query: 483 DLSENHFSGSI 493
F+ +
Sbjct: 334 KXDSADFANQV 344
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 136/375 (36%), Gaps = 79/375 (21%)
Query: 48 CQWTGVTCGHRHQRVTELDLESQNIGGFLS-PYIGNLSFLRVINLANNRFHGQIPKEVGR 106
T V + +T+L + + + Y+ NL +L NL N+ P +
Sbjct: 32 ASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYL---NLNGNQITDISP--LSN 86
Query: 107 LFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN 166
L +L + + N + + L NL + +++ +N + +I + N K L+L N
Sbjct: 87 LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN-ISDISPL-ANLTKXYSLNLGAN 142
Query: 167 QLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCN 226
L P + N + L + +K+ P + L +L L + N + PL +
Sbjct: 143 HNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL--AS 197
Query: 227 ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNE 286
++SL + N+ PV N +L L + N +T P L+N S+L WLE+
Sbjct: 198 LTSLHYFTAYVNQITDITPVA---NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEI-- 250
Query: 287 NHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGA 346
GT +D++ + LT L
Sbjct: 251 ---------------------------GTNQISDINAVKDLTKLKXL------------- 270
Query: 347 LPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNL 406
+ NQIS + NL LN L L NQL IG L NL
Sbjct: 271 ---------------NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNL 313
Query: 407 QYLGLVGNNIRGIIP 421
L L N+I I P
Sbjct: 314 TTLFLSQNHITDIRP 328
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 104 VGRLFRLETIVLSNNSFSGKIP-TNLSRCFNLIDFWVHT-NNLVGEIQAIIGNWLKLERL 161
V RL ++ + NN + P NLS+ W+ N + +I A+ + KL+ L
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPLANLSQLT-----WLEIGTNQISDINAV-KDLTKLKXL 270
Query: 162 SLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221
++ NQ++ + NLS L + + N+L + +G L NL L S+N + + P
Sbjct: 271 NVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Query: 222 LSVCNISSLDEA 233
L ++S D A
Sbjct: 329 L--ASLSKXDSA 338
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 136/559 (24%), Positives = 212/559 (37%), Gaps = 69/559 (12%)
Query: 78 PYIGNLSFLRVINLA-------------NNRFHGQIPKEVGRLFRLETIVLSNNSFSGKI 124
P I N +F R+INL + F Q RL+T+VL+ N
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--------HRLDTLVLTANPLIFMA 97
Query: 125 PTNLSRCFNLID-FWVHTNNLVGEIQAI-IGNWLKLERLSLYDNQLTGQLRPSIGNLSAL 182
T LS L F++ T + I I + N LE L L N ++ P L
Sbjct: 98 ETALSGPKALKHLFFIQTG--ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155
Query: 183 QTFDIAGNK---LDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239
+ D N L SL Q NL+ L + ND +G+ P + D A
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEP------GAFDSAVFQSLN 208
Query: 240 FKGSLPVCLGFN-LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFN 298
F G+ + + F L T+ + + +S A E++ + Q FN
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268
Query: 299 SLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTM 358
N + G L + + + L S L KL L N+F S +N + +
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-L 327
Query: 359 TLIAMAGNQISGTIPPE-IRNLFNLNGLGLEYNQL--TGTIPPAIGELRNLQYLGLVGNN 415
T +++ GN + + NL NL L L ++ + + + L +LQ L L N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 416 IRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPN--NQLNGTLPPQIF 473
+ ++ L +L L F +L+ + QNL L N + L Q+F
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLK--VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 474 GITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQ 533
P + L+L NHF + +L++L +L+I + LS C
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI----------LVLSFCDL------- 488
Query: 534 GNSFNGSIPQ-SLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPK- 591
SI Q + +LK + +DLS N L+ L L + YLNL+ NH +P
Sbjct: 489 -----SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 592 KGVFSNETRISLTGNEQLC 610
+ S + I+L N C
Sbjct: 543 LPILSQQRTINLRQNPLDC 561
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 499 NLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGS-IPQSLNALKSIKELDLS 557
+L++L+ LDIS H + ++LE L M GNSF + +P L+++ LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 558 CNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRI 601
L P L L+ LN++ N + VP G+F T +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP-DGIFDRLTSL 520
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 251 NLPKLTVLVVAQNNLT--GFLPQSLSNASKLEWLELNENHFSGQVRI--NFNSLPNLSKL 306
+LP L L +++N L+ G QS + L++L+L+ F+G + + NF L L L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHL 401
Query: 307 YLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGN 366
+NL + + F++L L+ L + A + I N +++ ++ MAGN
Sbjct: 402 DFQHSNLKQMSEFSV-FLSL----RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN 455
Query: 367 QISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGN 426
P+I ELRNL +L L + + P + +
Sbjct: 456 SFQENFLPDI-----------------------FTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 427 LTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLP 469
L+ L +L + N+L+ + +L ++ N + + P
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 179 LSALQTFDIAGNKL-DGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237
LS+L+ +AGN + +PD +LRNL +L S+ + P + ++SSL +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 238 NRFKGSLP 245
N+ K S+P
Sbjct: 504 NQLK-SVP 510
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 203 LRNLNYLGTSEND----FSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVL 258
LRNL YL S F+G+F +SSL+ + N F+ + + L LT L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 259 VVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311
++Q L P + ++ S L+ L + N F+ L +L K++L N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 117/303 (38%), Gaps = 58/303 (19%)
Query: 191 KLDGRIPDSLGQLR--NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCL 248
KL + DS Q+ NLN L E D ++ + Y+ N + LP +
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAF-----AYAHTIQKLYMGFNAIRY-LPPHV 112
Query: 249 GFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYL 308
N+P LTVLV+ +N+L+ N KL L ++ N+ F + +L L L
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 309 GRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGG-ALPHSIANLSTTMTLIAMAGNQ 367
N L T DL I L + +N A+P ++ L + I N
Sbjct: 173 SSNRL---THVDLSLI------PSLFHANVSYNLLSTLAIPIAVEELDASHNSI----NV 219
Query: 368 ISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNL 427
+ G + E L L L++N LT T L Y GLV
Sbjct: 220 VRGPVNVE------LTILKLQHNNLTDTA-------WLLNYPGLVE-------------- 252
Query: 428 TLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGI-TPLSKLLDLSE 486
+ L +N+L+ + K Q L +L NN+L ++G P K+LDLS
Sbjct: 253 -----VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSH 304
Query: 487 NHF 489
NH
Sbjct: 305 NHL 307
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 422 DSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNL-MQLSAPNNQLNGTLPPQIFGITPLSK 480
DS + LLN+ L ++ +Y Q L M +A LPP +F PL
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-----RYLPPHVFQNVPLLT 120
Query: 481 LLDLSENHFSGSIPLEV-GNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539
+L L N S S+P + N L L +S N+ T A T+L+ L + N
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 540 SIPQSLNALKSIKELDLSCNNLSG-QIPIHLQDL 572
L+ + S+ ++S N LS IPI +++L
Sbjct: 180 V---DLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 314 GTRTSTDLDFITLLTNCS-------------KLVKLGLVFNRFGGALPHSIANLSTTMTL 360
G+R T+ + + CS + +L L N+F +P ++N +TL
Sbjct: 1 GSRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKH-LTL 58
Query: 361 IAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGII 420
I ++ N+IS N+ L L L YN+L P L++L+ L L GN+I +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 421 PDSIGNLTLLNILQLGFNKL 440
+ +L+ L+ L +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 251 NLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGR 310
N+ +L L+++ N L P++ L L L+ N S FN L LS L +G
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 311 NNL 313
N L
Sbjct: 136 NPL 138
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 344 GGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403
G P L T + + IP ++ L+ L+ NQ T +P +
Sbjct: 1 GSRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELY------LDGNQFT-LVPKELSNY 53
Query: 404 RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQ 463
++L + L N I + S N+T L L L +N+L+ P ++L LS N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 464 LN 465
++
Sbjct: 114 IS 115
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 119/303 (39%), Gaps = 58/303 (19%)
Query: 191 KLDGRIPDSLGQLR--NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCL 248
KL + DS Q+ NLN L E D + ++ + Y+ N + LP +
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIR-YLPPHV 118
Query: 249 GFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYL 308
N+P LTVLV+ +N+L+ N KL L ++ N+ F + +L L L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 309 GRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGG-ALPHSIANLSTTMTLIAMAGNQ 367
N L T DL I L + +N A+P ++ L + I N
Sbjct: 179 SSNRL---THVDLSLI------PSLFHANVSYNLLSTLAIPIAVEELDASHNSI----NV 225
Query: 368 ISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNL 427
+ G + E L L L++N LT T L Y GLV
Sbjct: 226 VRGPVNVE------LTILKLQHNNLTDTAWL-------LNYPGLVE-------------- 258
Query: 428 TLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGI-TPLSKLLDLSE 486
+ L +N+L+ + K Q L +L NN+L + ++G P K+LDLS
Sbjct: 259 -----VDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSH 310
Query: 487 NHF 489
NH
Sbjct: 311 NHL 313
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 422 DSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNL-MQLSAPNNQLNGTLPPQIFGITPLSK 480
DS + LLN+ L ++ +Y Q L M +A LPP +F PL
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-----YLPPHVFQNVPLLT 126
Query: 481 LLDLSENHFSGSIPLEV-GNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539
+L L N S S+P + N L L +S N+ T A T+L+ L + N
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Query: 540 SIPQSLNALKSIKELDLSCNNLSG-QIPIHLQDL 572
L+ + S+ ++S N LS IPI +++L
Sbjct: 186 V---DLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 358 MTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIR 417
+T + + GN ++ +P EI+NL NL L L +N+LT ++P +G L+Y +N+
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF-DNMV 305
Query: 418 GIIPDSIGNLTLLNILQLGFNKLQ 441
+P GNL L L + N L+
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 80 IGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNN 118
I NLS LRV++L++NR +P E+G F+L+ +N
Sbjct: 266 IKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDN 303
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 492 SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551
+P E+ NL +L LD+S N ++ +P L +C L+Y N ++P L ++
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 552 KELDLSCNNLSGQI 565
+ L + N L Q
Sbjct: 319 QFLGVEGNPLEKQF 332
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 376 IRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435
R L L L L+YNQL +L L LGL N + + +LT L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 436 GFNKLQGSIPS-YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494
G N+L+ S+PS + L +L NQL ++P F + L LS N S+P
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Query: 495 L----EVGNLKSLV----QLDISR 510
+G L+++ Q D SR
Sbjct: 172 HGAFDRLGKLQTITLFGNQFDCSR 195
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 280 EWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLV 339
E L+L + F L L+ L L N L T ++ D +T +L LGL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------ELGTLGLA 91
Query: 340 FNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPA 399
N+ +LP + + T + + + GNQ+ L L L L NQL A
Sbjct: 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
+L NLQ L L N ++ + + L L + L N+ S
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNN 415
T +T + + NQ+ +L L LGL NQL L L L L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 416 IRGIIPDSIGNLTLLNILQLGFNKLQGSIPS-YLGKCQNLMQLSAPNNQL 464
++ + LT L L+L N+LQ SIP+ K NL LS NQL
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 61 RVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEV-GRLFRLETIVLSNNS 119
++T L+L+ + + +L+ L + LANN+ +P V L +L+ + L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 120 FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNL 179
R L + ++TN L L+ LSL NQL + L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 180 SALQTFDIAGNKLD 193
LQT + GN+ D
Sbjct: 179 GKLQTITLFGNQFD 192
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGK 123
+LDL+S + L+ L +NL N+ L L T+ L+NN +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97
Query: 124 IPTNLSRCFNLID-FWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSAL 182
+P + +D ++ N L + KL+ L L NQL + L+ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 183 QTFDIAGNKLDGRIP----DSLGQLRNLNYLG 210
QT ++ N+L +P D LG+L+ + G
Sbjct: 158 QTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 57 HRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLS 116
R ++ EL L + + + L+ L+ ++L+ N+ RL +L+TI L
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 117 NNSFSGKIPTNLSRCFNL-IDFWVHTNN 143
N F + SRC L + W+ N+
Sbjct: 188 GNQF------DCSRCETLYLSQWIRENS 209
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 376 IRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435
R L L L L+YNQL +L L LGL N + + +LT L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 436 GFNKLQGSIPS-YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494
G N+L+ S+PS + L +L NQL ++P F + L LS N S+P
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Query: 495 L----EVGNLKSLV----QLDISR 510
+G L+++ Q D SR
Sbjct: 172 HGAFDRLGKLQTITLFGNQFDCSR 195
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 280 EWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLV 339
E L+L + F L L+ L L N L T ++ D +T +L LGL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------ELGTLGLA 91
Query: 340 FNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPA 399
N+ +LP + + T + + + GNQ+ L L L L NQL A
Sbjct: 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
+L NLQ L L N ++ + + L L + L N+ S
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNN 415
T +T + + NQ+ +L L LGL NQL L L L L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 416 IRGIIPDSIGNLTLLNILQLGFNKLQGSIPS-YLGKCQNLMQLSAPNNQL 464
++ + LT L L+L N+LQ SIP+ K NL LS NQL
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGK 123
+LDL+S + L+ L +NL N+ L L T+ L+NN +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97
Query: 124 IPTNLSRCFNLID-FWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSAL 182
+P + +D ++ N L + KL+ L L NQL + L+ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 183 QTFDIAGNKLDGRIP----DSLGQLRNLNYLGTSENDFSGMFPLSVCNI 227
QT ++ N+L +P D LG+L+ + F F S C I
Sbjct: 158 QTLSLSTNQLQS-VPHGAFDRLGKLQTITL-------FGNQFDCSRCEI 198
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 61 RVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEV-GRLFRLETIVLSNNS 119
++T L+L+ + + +L+ L + LANN+ +P V L +L+ + L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 120 FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNL 179
R L + ++TN L L+ LSL NQL + L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 180 SALQTFDIAGNKLD 193
LQT + GN+ D
Sbjct: 179 GKLQTITLFGNQFD 192
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 103/262 (39%), Gaps = 29/262 (11%)
Query: 380 FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNK 439
++ L L+ ++ + LQ L L +++G+ P + L LL L L N
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL-PSGMKGLNLLKKLVLSVNH 309
Query: 440 LQGSIPSYLGKCQNLMQLSAPNN------QLNGTLPPQIFGITPLSKL-----LDLSENH 488
L Q+SA N + G + G+ L KL LDLS N
Sbjct: 310 FD-----------QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHND 358
Query: 489 FSGS--IPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQS-L 545
S L++ NL L L++S N C LE L + + + PQS
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPF 418
Query: 546 NALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHF-EGEVPKKGVFSNETRISLT 604
L ++ L+L+ L L LP L +LNL NHF +G + K + +T SL
Sbjct: 419 QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLL--QTVGSLE 476
Query: 605 GNEQLCGGLGELHLPACHSVGR 626
GL + A HS+G+
Sbjct: 477 VLILSSCGLLSIDQQAFHSLGK 498
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 132/339 (38%), Gaps = 40/339 (11%)
Query: 279 LEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGL 338
+E L L E+ FS F L +L L +L S + + L KL L
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSG-------MKGLNLLKKLVL 305
Query: 339 VFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPE-IRNLFNLNGLGLEYNQLTGT-- 395
N F S AN + +T + + GN + + L NL L L +N + +
Sbjct: 306 SVNHFDQLCQISAANFPS-LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 396 IPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLM 455
+ L +LQ L L N G+ + L +L L F +L + P QNL
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ--SPFQNLH 422
Query: 456 QLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSN 515
L Q+ +T LD S H +P+ L L++ NHF +
Sbjct: 423 FL-------------QVLNLTYC--FLDTSNQHLLAGLPV-------LRHLNLKGNHFQD 460
Query: 516 -EIPVT--LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDL 572
I T L +LE L++ Q+ ++L + +DLS N+L+ L L
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Query: 573 PFLEYLNLSYNHFEGEVPK-KGVFSNETRISLTGNEQLC 610
+ YLNL+ N P+ + S ++ I+L+ N C
Sbjct: 521 KGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDC 558
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 129/338 (38%), Gaps = 53/338 (15%)
Query: 283 ELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNR 342
ELNE FS + F + + + RNN S L+ L L +N+
Sbjct: 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-------------FRGLSSLIILKLDYNQ 90
Query: 343 F----GGALPHSIANLST-TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIP 397
F GA + +ANL T+T + G +SG + L +L L L N + P
Sbjct: 91 FLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQP 146
Query: 398 PAIG-ELRNLQYLGLVGNNIRGIIPDSIGNL--TLLNILQLGFNKLQGSIPSYLG--KCQ 452
+ +R L L N ++ I + + N +L+L LQ +LG KC
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 453 N------LMQLSAPNNQLNGTLPPQIFGITPLSKL--LDLSENHFSGS------------ 492
N + L N ++ + F +K+ L LS ++ GS
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 493 ---IPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALK 549
LE +K+ D+S++ + S T LE L + N N + L
Sbjct: 267 FTFKGLEASGVKTC---DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 550 SIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG 587
+ +L+LS N L ++L LE L+LSYNH
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 180 SALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239
S ++T D++ +K+ + +L L ++N+ I+ +D+ N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-----------INKIDD-----NA 318
Query: 240 FKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNS 299
F G L L L ++QN L + N KLE L+L+ NH +F
Sbjct: 319 FWG---------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Query: 300 LPNLSKLYLGRNNLGTRTSTDLDFITLL 327
LPNL +L L N L + D +T L
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSL 397
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 674 QFPIVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712
Q S EL A+ FS+ N +G+G FG VYKG L +G
Sbjct: 24 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG 62
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG 474
N+ + PD + T IL L N L + L L QL+ +L Q+ G
Sbjct: 21 NLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDG 74
Query: 475 ITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534
P+ LDLS N S+PL L +L LD+S N ++ L L+ L ++G
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 535 NSFNGSIPQSLNALKSIKELDLSCNNLS 562
N P L +++L L+ NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 177 GNLSALQTFDIAGNKLDGRIPDSLGQ-LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
G L L T D++ N+L +P LGQ L L L S N + + ++ + L E YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N K +LP L PKL L +A NNLT LP L
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGL---------------------- 167
Query: 296 NFNSLPNLSKLYLGRNNLGT 315
N L NL L L N+L T
Sbjct: 168 -LNGLENLDTLLLQENSLYT 186
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG 474
N+ + PD + T IL L N L + L L QL+ +L Q+ G
Sbjct: 21 NLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDG 74
Query: 475 ITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534
P+ LDLS N S+PL L +L LD+S N ++ L L+ L ++G
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 535 NSFNGSIPQSLNALKSIKELDLSCNNLS 562
N P L +++L L+ NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 177 GNLSALQTFDIAGNKLDGRIPDSLGQ-LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
G L L T D++ N+L +P LGQ L L L S N + + ++ + L E YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N K +LP L PKL L +A NNLT LP L
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGL---------------------- 167
Query: 296 NFNSLPNLSKLYLGRNNLGT 315
N L NL L L N+L T
Sbjct: 168 -LNGLENLDTLLLQENSLYT 186
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ NNL+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 177 GNLSALQTFDIAGNKLDGRIPDSLGQ-LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
G L L T D++ N+L +P LGQ L L L S N + + ++ + L E YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N K +LP L PKL L +A NNLT LP L
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGL---------------------- 167
Query: 296 NFNSLPNLSKLYLGRNNLGT 315
N L NL L L N+L T
Sbjct: 168 -LNGLENLDTLLLQENSLYT 186
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG 474
N+ + PD + T IL L N L + L L QL+ +L Q+ G
Sbjct: 21 NLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDG 74
Query: 475 ITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534
P+ LDLS N S+PL L +L LD+S N ++ L L+ L ++G
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 535 NSFNGSIPQSLNALKSIKELDLSCNNLS 562
N P L +++L L+ NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 177 GNLSALQTFDIAGNKLDGRIPDSLGQ-LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
G L L T D++ N+L +P LGQ L L L S N + + ++ + L E YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N K +LP L PKL L +A NNLT LP L
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGL---------------------- 167
Query: 296 NFNSLPNLSKLYLGRNNLGT 315
N L NL L L N+L T
Sbjct: 168 -LNGLENLDTLLLQENSLYT 186
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 72 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ NNL+
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 177 GNLSALQTFDIAGNKLDGRIPDSLGQ-LRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235
G L L T D++ N+L +P LGQ L L L S N + + ++ + L E YL
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRI 295
N K +LP L PKL L +A NNLT LP L
Sbjct: 133 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGL---------------------- 168
Query: 296 NFNSLPNLSKLYLGRNNLGT 315
N L NL L L N+L T
Sbjct: 169 -LNGLENLDTLLLQENSLYT 187
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 117/312 (37%), Gaps = 48/312 (15%)
Query: 158 LERLSLYDNQLTGQLRPSIGNL--SALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSEND 215
++ LSL +NQL + L + L D++ N L S L +L YL N+
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 216 FSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSN 275
+ P S +S+L R+ + L K +V + + N+ F Q L
Sbjct: 284 IQRLSPRSFYGLSNL--------RY-----LSLKRAFTKQSVSLASHPNIDDFSFQWLK- 329
Query: 276 ASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVK 335
LE+L +++N+ F L +L L L + +T T+ F++L S L+
Sbjct: 330 --YLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH--SPLLT 385
Query: 336 LGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIP-PEIRNLFNLNGLGLEYNQL-- 392
L L N + + L + ++ + N+I + E R L N+ + L YN+
Sbjct: 386 LNLTKNHISKIANGTFSWLGQ-LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQ 444
Query: 393 ------------------------TGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLT 428
P LRNL L L NNI I D + L
Sbjct: 445 LSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLE 504
Query: 429 LLNILQLGFNKL 440
L IL N L
Sbjct: 505 NLEILDFQHNNL 516
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 356 TTMTLIAMAGNQISGTIPPEIRNL--FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVG 413
T++ +++A NQ+ T L NL L L YN L + L +L+YL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 414 NNIRGIIPDSIGNLTLLNILQL--GFNKLQGSIPSY-------LGKCQNLMQLSAPNNQL 464
NNI+ + P S L+ L L L F K S+ S+ + L L+ +N +
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 465 NGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQ-----LDISRNHFSNEIPV 519
T G+ L K L LS+ F+ L SL L++++NH S
Sbjct: 342 PSTKSNTFTGLVSL-KYLSLSKT-FTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANG 399
Query: 520 TLSACTTLEYLLMQGNSFNGSIP-QSLNALKSIKELDLSCN 559
T S L L + N + Q L++I E+ LS N
Sbjct: 400 TFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 34/277 (12%)
Query: 347 LPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNL 406
L H +L + +T++ + NQ+ P L L +N ++ P L L
Sbjct: 16 LTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 407 QYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNG 466
+ L L N + I + T L L L N + + +NL++L +N L+
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 467 TL--------------------------PPQIFGITPLSKLLDLSEN---HFSGSIPLEV 497
T + G + L K LDLS N FS +
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK-LDLSSNPLKEFSPGCFQTI 194
Query: 498 GNLKSLVQLDISRN-HFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALK--SIKEL 554
G L +L+ + N H + ++ LS T+++ L + N + + + LK ++ +L
Sbjct: 195 GKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 555 DLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPK 591
DLS NNL LP L YL+L YN+ + P+
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 184/474 (38%), Gaps = 79/474 (16%)
Query: 157 KLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLG--TS 212
+LE L L N+L P++ L+ D++ N D I G + L +LG T+
Sbjct: 70 ELEYLDLSHNKLVKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 213 ENDFSGMFPLSVCNISS----LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGF 268
+ S + P++ NIS L E Y K +G FN L ++
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG----LQDFNTESLHIVFPTNKEFHFI 181
Query: 269 LPQSLSNASKLEW------LELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLD 322
L S+ + LE LE N+ + + + P LS L L NN+ T ++
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL--NNIETTWNS--- 236
Query: 323 FITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNL 382
FI +L LV++ TT+ +++ ++ G + + R+ F+
Sbjct: 237 FIRIL---------QLVWH--------------TTVWYFSISNVKLQGQL--DFRD-FDY 270
Query: 383 NGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQG 442
+G L+ + + G ++ Y + N+ + N G +
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIY-------------EIFSNMNIKNFTVSGTRMVHM 317
Query: 443 SIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL-LDLSENHFSGSIPLEVGNLK 501
PS K + L NN L T+ +T L L L +++ I +K
Sbjct: 318 LCPS---KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 502 SLVQLDISRNHFS-NEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560
SL QLDIS+N S +E S +L L M N +I + L IK LDL N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNK 432
Query: 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNET---RISLTGNEQLCG 611
+ IP + L L+ LN++ N + VP G+F T +I L N C
Sbjct: 433 IKS-IPKQVVKLEALQELNVASNQLKS-VP-DGIFDRLTSLQKIWLHTNPWDCS 483
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 86 LRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142
++V++L +N+ IPK+V +L L+ + +++N R +L W+HTN
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 5/199 (2%)
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSI 444
L L+ N++T L+NL L L+ N I I P + L L L L N+L+ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 445 PSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLV 504
P + K L +L N++ G+ + +++L N S +E G + +
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSS-GIENGAFQGMK 171
Query: 505 QLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQ 564
+L R +N + +L L + GN SL L ++ +L LS N++S
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 565 IPIHLQDLPFLEYLNLSYN 583
L + P L L+L+ N
Sbjct: 232 DNGSLANTPHLRELHLNNN 250
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKI 124
LDL++ I NL L + L NN+ P L +LE + LS N ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 125 PTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQ------------- 171
P + + L + VH N + +++ ++ + L N L
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 172 --LRPSIGNLS--------ALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221
+R + N++ +L + GNK+ SL L NL LG S N S +
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 222 LSVCNISSLDEAYLFKNRF 240
S+ N L E +L N+
Sbjct: 234 GSLANTPHLRELHLNNNKL 252
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
Query: 185 FDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244
D+ NK+ L+NL+ L N S + P + + L+ YL KN+ K
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-- 114
Query: 245 PVCLGFNLPK-LTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN----------HFSGQV 293
L +PK L L V +N +T + +++ +EL N F G
Sbjct: 115 ---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 294 RINFNSL-------------PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVF 340
++++ + P+L++L+L N + T D + L N L KLGL F
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKI---TKVDAASLKGLNN---LAKLGLSF 225
Query: 341 NRFGGALPHSIAN 353
N S+AN
Sbjct: 226 NSISAVDNGSLAN 238
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 41/267 (15%)
Query: 52 GVTCGHR---HQRVTEL-DLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRL 107
G C R H RV + DL + + L P +++L NN+ + L
Sbjct: 22 GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNL 75
Query: 108 FRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQ 167
L T++L NN S P + L ++ N L + + L+ L +++N+
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENE 132
Query: 168 LTGQLRPSIGN-LSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCN 226
+T ++R S+ N L+ + ++ N L G F GM LS
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSS--------------GIENGAFQGMKKLSYIR 177
Query: 227 ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNE 286
I+ + + + LP P LT L + N +T SL + L L L+
Sbjct: 178 IADTNITTIPQ-----GLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 287 NHFSGQVRINFNSLPNLSKLYLGRNNL 313
N S + + P+L +L+L N L
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 5/199 (2%)
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSI 444
L L+ N++T L+NL L L+ N I I P + L L L L N+L+ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 445 PSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLV 504
P + K L +L N++ G+ + +++L N S +E G + +
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSS-GIENGAFQGMK 171
Query: 505 QLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQ 564
+L R +N + +L L + GN SL L ++ +L LS N++S
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 565 IPIHLQDLPFLEYLNLSYN 583
L + P L L+L+ N
Sbjct: 232 DNGSLANTPHLRELHLNNN 250
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKI 124
LDL++ I NL L + L NN+ P L +LE + LS N ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 125 PTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQ------------- 171
P + + L + VH N + +++ ++ + L N L
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 172 --LRPSIGNLS--------ALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221
+R + N++ +L + GNK+ SL L NL LG S N S +
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 222 LSVCNISSLDEAYLFKNRF 240
S+ N L E +L N+
Sbjct: 234 GSLANTPHLRELHLNNNKL 252
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
Query: 185 FDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244
D+ NK+ L+NL+ L N S + P + + L+ YL KN+ K
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-- 114
Query: 245 PVCLGFNLPK-LTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN----------HFSGQV 293
L +PK L L V +N +T + +++ +EL N F G
Sbjct: 115 ---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 294 RINFNSL-------------PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVF 340
++++ + P+L++L+L N + T D + L N L KLGL F
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKI---TKVDAASLKGLNN---LAKLGLSF 225
Query: 341 NRFGGALPHSIAN 353
N S+AN
Sbjct: 226 NSISAVDNGSLAN 238
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 41/267 (15%)
Query: 52 GVTCGHR---HQRVTEL-DLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRL 107
G C R H RV + DL + + L P +++L NN+ + L
Sbjct: 22 GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNL 75
Query: 108 FRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQ 167
L T++L NN S P + L ++ N L + + L+ L +++N+
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENE 132
Query: 168 LTGQLRPSIGN-LSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCN 226
+T ++R S+ N L+ + ++ N L G F GM LS
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSS--------------GIENGAFQGMKKLSYIR 177
Query: 227 ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNE 286
I+ + + + LP P LT L + N +T SL + L L L+
Sbjct: 178 IADTNITTIPQ-----GLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 287 NHFSGQVRINFNSLPNLSKLYLGRNNL 313
N S + + P+L +L+L N L
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 16/215 (7%)
Query: 253 PKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNN 312
P T+L + N+++ L L L N S F+ L L KLY+ +N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 313 LGTRTSTDLDFITLLTNC-SKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGT 371
L + + N S LV+L + NR +P + + M I M GN + +
Sbjct: 114 L----------VEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 372 -IPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLL 430
P + LN L + +LTG IP + E L L L N I+ I + + + L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKL 219
Query: 431 NILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLN 465
L LG N+++ L L +L NN+L+
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 102/255 (40%), Gaps = 37/255 (14%)
Query: 62 VTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFS 121
T LDL++ +I L L + L NN+ K L +L+ + +S N
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 122 GKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSA 181
+IP NL +L++ +H DN++ + L
Sbjct: 116 -EIPPNLPS--SLVELRIH------------------------DNRIRKVPKGVFSGLRN 148
Query: 182 LQTFDIAGNKLD--GRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239
+ ++ GN L+ G P + L+ LNYL SE +G+ P + +L+E +L N+
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGI-PKDL--PETLNELHLDHNK 204
Query: 240 FKG-SLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFN 298
+ L L ++ KL L + N + SLS L L L+ N S +V
Sbjct: 205 IQAIELEDLLRYS--KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261
Query: 299 SLPNLSKLYLGRNNL 313
L L +YL NN+
Sbjct: 262 DLKLLQVVYLHTNNI 276
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 492 SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551
SIP G +++ LD+S N + L C L+ L++ N N S ++L S+
Sbjct: 45 SIP--SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 552 KELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISL 603
+ LDLS N LS + L L +LNL N ++ + + +FS+ T++ +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI 153
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 32/260 (12%)
Query: 331 SKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQIS--GTIPPEIRNLFNLNGLGLE 388
S +L L N+ +LPH + + T +T ++++ N +S G +L L L
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 389 YNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYL 448
+N + +G L L++L +N++ + S+ L+L N++ L + +
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVA--- 141
Query: 449 GKCQNLMQLSAPNNQLNGTLPPQIF-GITPLSKLLDLSENHFSGS-IPLEVGNLKSLVQL 506
NG IF G++ L ++L ++ N F + +P L++L L
Sbjct: 142 ---------------FNG-----IFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 507 DISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIP 566
D+S+ P ++ ++L+ L M N+F L S++ LD S N++
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 567 IHLQDLP-FLEYLNLSYNHF 585
LQ P L +LNL+ N F
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 203 LRNLNYLGTSEND----FSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVL 258
LRNL YL S F+G+F +SSL+ + N F+ + + L LT L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 259 VVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTS 318
++Q L P + ++ S L+ L ++ N+F + L +L L N++ T
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 319 TDLDFITLLTNCSKLVKLGLVFNRFGGALPH 349
+L S L L L N F H
Sbjct: 241 QELQHFP-----SSLAFLNLTQNDFACTCEH 266
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 179 LSALQTFDIAGNKL-DGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237
LS+L+ +AGN + +PD +LRNL +L S+ + P + ++SSL +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 238 NRFKG--SLPV-CLGFNLPKLTVLVVAQNNLTGFLPQSLSN-ASKLEWLELNENHFS 290
N F + P CL L VL + N++ Q L + S L +L L +N F+
Sbjct: 504 NNFFSLDTFPYKCLN----SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Query: 405 NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGF---NKLQGSIPSYLGKCQNLMQLSAPN 461
+L+YL L N G+I S L L + L F N Q S S +NL+ L +
Sbjct: 374 SLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 462 NQLNGTLPPQIFGITPLSKLLDLSENHFSGS-IPLEVGNLKSLVQLDISRNHFSNEIPVT 520
G++ L ++L ++ N F + +P L++L LD+S+ P
Sbjct: 431 THTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 521 LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLP-FLEYLN 579
++ ++L+ L M N+F L S++ LD S N++ LQ P L +LN
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 580 LSYNHF 585
L+ N F
Sbjct: 550 LTQNDF 555
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 203 LRNLNYLGTSEND----FSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVL 258
LRNL YL S F+G+F +SSL+ + N F+ + + L LT L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 259 VVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTS 318
++Q L P + ++ S L+ L ++ N+F + L +L L N++ T
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 319 TDLDFITLLTNCSKLVKLGLVFNRFGGALPH 349
+L S L L L N F H
Sbjct: 536 QELQHFP-----SSLAFLNLTQNDFACTCEH 561
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 179 LSALQTFDIAGNKL-DGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237
LS+L+ +AGN + +PD +LRNL +L S+ + P + ++SSL +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 238 NRFKG--SLPV-CLGFNLPKLTVLVVAQNNLTGFLPQSLSN-ASKLEWLELNENHFS 290
N F + P CL L VL + N++ Q L + S L +L L +N F+
Sbjct: 528 NNFFSLDTFPYKCLN----SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Query: 405 NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGF---NKLQGSIPSYLGKCQNLMQLSAPN 461
+L+YL L N G+I S L L + L F N Q S S +NL+ L +
Sbjct: 398 SLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454
Query: 462 NQLNGTLPPQIFGITPLSKLLDLSENHFSGS-IPLEVGNLKSLVQLDISRNHFSNEIPVT 520
G++ L ++L ++ N F + +P L++L LD+S+ P
Sbjct: 455 THTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 521 LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLP-FLEYLN 579
++ ++L+ L M N+F L S++ LD S N++ LQ P L +LN
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 580 LSYNHF 585
L+ N F
Sbjct: 574 LTQNDF 579
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 203 LRNLNYLGTSEND----FSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVL 258
LRNL YL S F+G+F +SSL+ + N F+ + + L LT L
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 259 VVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTS 318
++Q L P + ++ S L+ L ++ N+F + L +L L N++ T
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 319 TDLDFITLLTNCSKLVKLGLVFNRFGGALPH 349
+L S L L L N F H
Sbjct: 560 QELQHFP-----SSLAFLNLTQNDFACTCEH 585
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ N+L+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 674 QFPIVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712
Q S EL A+ F + N +G+G FG VYKG L +G
Sbjct: 16 QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADG 54
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 150/374 (40%), Gaps = 95/374 (25%)
Query: 109 RLETIVLSNNSFS--GKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN 166
LE++V S NS + ++P +L V NNL +A+ LE L + +N
Sbjct: 92 HLESLVASCNSLTELPELPQSLKSLL------VDNNNL----KALSDLPPLLEYLGVSNN 141
Query: 167 QLTGQLRPSIGNLSALQTFDIAGNKLDGRIPD----------------SLGQLRNLNYLG 210
QL P + N S L+ D+ N L ++PD L +L+NL +L
Sbjct: 142 QLEK--LPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT 198
Query: 211 TSENDFSGM-----FPLSVCNISS----LDEAYLFKN-------RFKGSLPVCLGFNLPK 254
D + + PLS+ +I + L+E +N +L L P
Sbjct: 199 AIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS 258
Query: 255 LTVLVVAQNNLTGF--LPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNN 312
L L V N LT LPQSL+ +L+++EN FSG + PNL L N
Sbjct: 259 LEALNVRDNYLTDLPELPQSLT------FLDVSENIFSGLSELP----PNLYYLNASSNE 308
Query: 313 LGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTI 372
+ + L + +KL++L ALP + L + +A
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLIEL--------PALPPRLERLIASFNHLAEV-------- 352
Query: 373 PPEIRNLFNLNGLGLEYNQLT--GTIPPAIGELR-------------NLQYLGLVGNNIR 417
PE+ NL L +EYN L IP ++ +LR NL+ L + N +R
Sbjct: 353 -PELPQ--NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 418 GI--IPDSIGNLTL 429
IP+S+ +L +
Sbjct: 410 EFPDIPESVEDLRM 423
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 492 SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551
SIP G +++ LD+S N + L C L+ L++ N N S ++L S+
Sbjct: 19 SIP--SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 552 KELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISL 603
+ LDLS N LS + L L +LNL N ++ + + +FS+ T++ +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI 127
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 500 LKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG---NSFNGSIPQSLNALK------- 549
LK+L +DIS+N F + +P T ++YL + +S G IP++L L
Sbjct: 386 LKNLTNIDISKNSF-HSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 550 -------SIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRI 601
+KEL +S N L L LP L L +S N + VP G+F T +
Sbjct: 445 LFSLNLPQLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKS-VP-DGIFDRLTSL 499
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ N L+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ N L+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ N L+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 471 QIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYL 530
Q+ G P+ LDLS N S+PL L +L LD+S N ++ L L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562
++GN P L +++L L+ N L+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI-GNLTLLNILQLGFNKLQGS 443
L LE N+L +L L L L N I+ + PD + LT L IL L NKLQ
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSL 91
Query: 444 IPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG-ITPLSKLLDLSENHFSGSIP 494
K L +L+ NQL ++P IF +T L K+ L N + S P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIW-LHTNPWDCSCP 141
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 331 SKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYN 390
S +L L N+ +LPH + + T +T ++++ NQI L L L L N
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 391 QLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSI-GNLTLLNILQLGFNKLQGSIP--SY 447
+L +L L+ L L N ++ +PD I LT L + L N S P Y
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
Query: 448 LGK 450
L +
Sbjct: 146 LSR 148
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF-------------------SGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 143 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF-------------------SGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 143 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF-------------------SGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 143 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 492 SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551
SIP G ++ LD+S N + L AC L+ L+++ + N + +L S+
Sbjct: 19 SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 552 KELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFE 586
+ LDLS N+LS L L+YLNL N ++
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 382 LNGLGLEYNQLTGTIPPAIGELR---NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438
+ L L +N++T G+LR NLQ L L + I I D+ +L L L L N
Sbjct: 28 MKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 439 KLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVG 498
L S+ G +L L+ N P Q G+T L + + L +G
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGN------PYQTLGVTSLFP-------NLTNLQTLRIG 131
Query: 499 NLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSC 558
N+++ FS + + T+L L ++ S QSL +++ I L L
Sbjct: 132 NVET----------FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 559 NNLSGQIPIHLQDLPFLEYLNL 580
+ + + I L + YL L
Sbjct: 182 SESAFLLEIFADILSSVRYLEL 203
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF-------------------SGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 62 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 119
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 120 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 492 SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551
SIP G ++ LD+S N + L AC L+ L+++ + N + +L S+
Sbjct: 45 SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 552 KELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFE 586
+ LDLS N+LS L L+YLNL N ++
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 382 LNGLGLEYNQLTGTIPPAIGELR---NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438
+ L L +N++T G+LR NLQ L L + I I D+ +L L L L N
Sbjct: 54 MKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 439 KLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVG 498
L S+ G +L L+ N P Q G+T L + + L +G
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGN------PYQTLGVTSLFP-------NLTNLQTLRIG 157
Query: 499 NLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSC 558
N+++ FS + + T+L L ++ S QSL +++ I L L
Sbjct: 158 NVET----------FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 207
Query: 559 NNLSGQIPIHLQDLPFLEYLNL 580
+ + + I L + YL L
Sbjct: 208 SESAFLLEIFADILSSVRYLEL 229
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 474 GITPLSKLLDLSENHF-----SGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLE 528
G P + L LS+NH +G I L LK+L LDISRN F + +P + +
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEILL---TLKNLTSLDISRNTF-HPMPDSCQWPEKMR 439
Query: 529 YLLMQGNSF---NGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHF 585
+L + IPQ+L LD+S NNL LP L+ L +S N
Sbjct: 440 FLNLSSTGIRVVKTCIPQTLEV------LDVSNNNLDSFSLF----LPRLQELYISRNKL 489
Query: 586 EGEVPKKGVF 595
+ +P +F
Sbjct: 490 KT-LPDASLF 498
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 125 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 65 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 122
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 123 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 171
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 62 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 119
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 120 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 87 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 144
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 145 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 193
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 65 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 122
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSI 351
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P +
Sbjct: 123 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQIRRIVP--L 172
Query: 352 ANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGL 387
A L T + + ++ N IS +R L NL+ L L
Sbjct: 173 ARL-TKLQNLYLSKNHISDL--RALRGLKNLDVLEL 205
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNEN-------------------HFSGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P
Sbjct: 125 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 38/156 (24%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF-------------------SGQ 292
LP +T L + N LT P L+N L WL L+EN +G
Sbjct: 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 121
Query: 293 VRIN-FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSI 351
IN LP L LYLG N + TD IT+L+ +KL L L N+ +P +
Sbjct: 122 SDINGLVHLPQLESLYLGNNKI-----TD---ITVLSRLTKLDTLSLEDNQISDIVP--L 171
Query: 352 ANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGL 387
A L T + + ++ N IS ++R L L L +
Sbjct: 172 AGL-TKLQNLYLSKNHIS-----DLRALAGLKNLDV 201
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 656 TRRTKLAHKLSSALLMEQQFPIVSY----AELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711
++ +K + ++ AL P SY +L +AT F IG G FG VYKG L +
Sbjct: 3 SKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD 62
Query: 712 GG 713
G
Sbjct: 63 GA 64
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 656 TRRTKLAHKLSSALLMEQQFPIVSY----AELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711
++ +K + ++ AL P SY +L +AT F IG G FG VYKG L +
Sbjct: 3 SKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD 62
Query: 712 GG 713
G
Sbjct: 63 GA 64
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 29/219 (13%)
Query: 389 YNQL-TGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSY 447
YN L T + ++ + + L L + N + G +P + G+ L L L +N++ ++
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF 372
Query: 448 LGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS--KLLDLSENHFSGSI------PLEVGN 499
G + + LS +N+L P IF +S +D S N GS+ PL+
Sbjct: 373 CGFTEQVENLSFAHNKLKYI--PNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTP 429
Query: 500 LK--SLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKE---- 553
K ++ +++S N S S + L + + GN IP+ N+LK E
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPK--NSLKDENENFKN 486
Query: 554 ------LDLSCNNLSG-QIPIHLQDLPFLEYLNLSYNHF 585
+DL N L+ LP+L ++LSYN F
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 251 NLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGR 310
+L L L N LT ++L L+LN+NH R F++L +L+ +YL
Sbjct: 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 311 N 311
N
Sbjct: 115 N 115
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 433 LQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFG-ITPLSKLLDLSENHFSG 491
L L N++ P NL QL +N+L +P +F +T L++L DL++NH
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL-DLNDNHLK- 94
Query: 492 SIPL-EVGNLKSLVQLDISRNHFSNE 516
SIP NLKSL + + N + E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 159 ERLSLYDNQLTGQLRPSI-GNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFS 217
+RL L +NQ+T +L P + +L LQ NKL +L L L ++N
Sbjct: 36 QRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 218 GMFPLSVCNISSLDEAYLFKN 238
+ + N+ SL YL+ N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 690 FSSSNRIGKGSFGFVYKG 707
F+ +RIGKGSFG VYKG
Sbjct: 21 FTKLDRIGKGSFGEVYKG 38
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 185 FDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244
D++ N+L +P +L LR L L S+N + V N+ L E L NR + S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSA 524
Query: 245 PVCLGFNLPKLTVLVVAQNNL 265
+ + P+L +L + N+L
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 185 FDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244
D++ N+L +P +L LR L L S+N + V N+ L E L NR + S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSA 524
Query: 245 PVCLGFNLPKLTVLVVAQNNL 265
+ + P+L +L + N+L
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSL 545
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311
LP L L + +N LTG P + AS ++ L+L EN F L L L L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 312 NLGTRTSTDLDFITLLTN 329
+ + + LT+
Sbjct: 113 QISCVMPGSFEHLNSLTS 130
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 105 GRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLY 164
GRL L + L N +G P ++ + + N + + +L+ L+LY
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 165 DNQLTGQLRPSIGNLSALQTFDIAGN 190
DNQ++ + S +L++L + ++A N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSA 459
+ ++RNL +L L N I + +L L ++ G NKL+ GK L QL+
Sbjct: 143 LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNL 201
Query: 460 PNNQLNGTLPPQIFG-ITPLSKLLDLSENHFSGSIP 494
+NQL ++P IF +T L K+ L N + S P
Sbjct: 202 ASNQLK-SVPDGIFDRLTSLQKIW-LHTNPWDCSCP 235
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 344 GGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403
G L NL T+T I + N I P L + L NQ++ P A L
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 404 RNLQYLGLVGNNI 416
R+L L L GN I
Sbjct: 80 RSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 344 GGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403
G L NL T+T I + N I P L + L NQ++ P A L
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 404 RNLQYLGLVGNNI 416
R+L L L GN I
Sbjct: 80 RSLNSLVLYGNKI 92
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 9/160 (5%)
Query: 61 RVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEV-GRLFRLETIVLSNNS 119
+ T LDLE+ ++ + L+ L + L N+ +P V +L L + LS N
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ 87
Query: 120 FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNL 179
+ L + ++TN L + +L+ L LY NQL L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 180 SALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219
++LQ + N D P + YL N SG+
Sbjct: 148 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGV 180
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 417 RGIIPDSIGNLTLLNILQLGFNKLQG---SIPSYLGKCQNLMQLSAPN-NQLNGTLPPQI 472
R ++ L NIL +L S+PSY L+ LS N ++L P
Sbjct: 7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTA----LLDLSHNNLSRLRAEWTPT- 61
Query: 473 FGITPLSKLLDLSENHF---SGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEY 529
+T L LL LS NH S + V NL+ LD+S NH S LE
Sbjct: 62 -RLTNLHSLL-LSHNHLNFISSEAFVPVPNLR---YLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 530 LLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHL----QDLPFLEYLNLSYN 583
LL+ N + + +++L LS N +S + P+ L LP L L+LS N
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 409 LGLVGNNIRGIIPDSIGNLTLLNILQLG 436
L L G +G +PD+IG LT L +L G
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFG 355
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 337 GLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTI 396
G + G +L + TT ++ + NQI+ P L L L L+ NQLT
Sbjct: 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 397 PPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435
+L L L L N ++ I + NL L + L
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 356 TTMTLIAMAGNQISG-TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
T++ + MAGN T+ N NL L L QL L LQ L + N
Sbjct: 443 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 502
Query: 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
N+ + L L+ L FN+++ S
Sbjct: 503 NLLFLDSSHYNQLYSLSTLDCSFNRIETS 531
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 337 GLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTI 396
G + G +L + TT ++ + NQI+ P L L L L+ NQLT
Sbjct: 19 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 397 PPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435
+L L L L N ++ I + NL L + L
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQ 202
NL E I+ +W+ R Y ++ Q+ NLS LQ + N +PD L Q
Sbjct: 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72
Query: 203 LRN 205
RN
Sbjct: 73 RRN 75
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 356 TTMTLIAMAGNQISG-TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414
T++ + MAGN T+ N NL L L QL L LQ L + N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Query: 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGS 443
N+ + L L+ L FN+++ S
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,236,225
Number of Sequences: 62578
Number of extensions: 842514
Number of successful extensions: 3309
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 546
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)