Query 041089
Match_columns 713
No_of_seqs 616 out of 4853
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.1E-83 9E-88 753.1 52.6 686 7-710 17-712 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-60 3.6E-65 561.4 39.0 515 84-610 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 8.1E-43 1.7E-47 331.8 -14.9 474 61-586 46-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 8.5E-42 1.8E-46 324.8 -13.1 459 60-538 68-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 6E-38 1.3E-42 311.9 6.9 371 160-589 82-455 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.2E-37 7E-42 306.7 9.5 390 62-461 54-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-37 3E-42 325.9 -3.5 482 65-584 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.7E-37 3.6E-42 325.3 -6.1 486 62-583 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.4E-34 2.9E-39 290.0 -1.6 365 82-535 5-372 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.8E-34 1.5E-38 285.0 -2.8 369 181-591 8-380 (1255)
11 PLN03210 Resistant to P. syrin 99.9 5.7E-23 1.2E-27 242.5 26.9 364 60-463 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 239.9 27.1 135 148-288 580-715 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.8E-25 6.1E-30 212.3 -3.7 279 60-344 67-359 (498)
14 KOG4237 Extracellular matrix p 99.9 7.2E-25 1.6E-29 209.5 -3.6 394 158-583 69-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4E-20 8.7E-25 202.1 17.0 259 255-589 203-461 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.2E-19 2.6E-24 198.3 17.2 133 62-217 203-335 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.7E-19 3.6E-24 198.7 18.5 338 12-393 56-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-18 2.8E-23 191.8 12.2 233 49-314 169-401 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-19 7.6E-24 183.3 -0.7 153 65-217 3-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-19 1.6E-23 180.9 0.8 254 88-344 2-291 (319)
21 KOG0617 Ras suppressor protein 99.7 3.1E-19 6.8E-24 151.3 -4.6 158 79-241 28-186 (264)
22 KOG0617 Ras suppressor protein 99.6 7.9E-18 1.7E-22 142.9 -1.9 155 378-538 31-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.7E-15 3.6E-20 167.0 13.6 150 15-167 368-526 (623)
24 PLN03150 hypothetical protein; 99.5 2.6E-14 5.7E-19 157.6 11.6 118 502-622 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 4E-18 138.0 -3.0 193 380-583 75-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 8.2E-14 1.8E-18 140.5 -5.7 176 402-587 73-248 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3E-11 6.4E-16 127.9 7.1 197 360-590 97-294 (394)
28 COG4886 Leucine-rich repeat (L 99.2 4.5E-11 9.8E-16 126.5 7.8 201 334-569 96-297 (394)
29 KOG1909 Ran GTPase-activating 99.2 3.8E-12 8.2E-17 121.5 -1.1 182 60-241 30-254 (382)
30 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.2E-16 119.3 0.3 209 379-587 120-340 (505)
31 KOG3207 Beta-tubulin folding c 99.0 4.7E-11 1E-15 117.3 0.8 208 105-315 118-340 (505)
32 KOG1909 Ran GTPase-activating 99.0 2.1E-11 4.5E-16 116.5 -2.5 246 78-343 24-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.4E-15 102.2 5.0 127 80-211 15-147 (175)
34 KOG1259 Nischarin, modulator o 99.0 6.2E-11 1.3E-15 110.5 -0.1 131 452-589 284-415 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.0 8.1E-10 1.7E-14 124.7 6.7 251 60-315 545-808 (889)
36 KOG1259 Nischarin, modulator o 98.9 3.2E-10 6.9E-15 105.8 2.6 206 76-315 206-413 (490)
37 PF14580 LRR_9: Leucine-rich r 98.9 6.6E-10 1.4E-14 100.0 4.6 125 60-189 19-149 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9E-10 1.9E-14 124.3 4.8 84 152-236 567-650 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.8E-09 6E-14 78.7 3.3 59 526-584 2-60 (61)
40 PF08263 LRRNT_2: Leucine rich 98.8 5.2E-09 1.1E-13 70.3 4.1 39 18-56 2-43 (43)
41 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.3E-14 78.2 3.1 61 501-561 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.7E-14 114.5 0.2 200 376-587 114-319 (414)
43 KOG0531 Protein phosphatase 1, 98.7 2.7E-09 5.8E-14 113.0 -1.2 249 83-348 71-322 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 8.8E-10 1.9E-14 103.0 -7.6 140 49-193 127-273 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 4.2E-09 9E-14 110.0 -6.8 179 397-587 102-293 (1096)
46 KOG1859 Leucine-rich repeat pr 98.4 3.2E-09 7E-14 110.8 -7.9 127 429-563 165-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.3 7.4E-09 1.6E-13 96.9 -7.1 158 251-439 208-374 (419)
48 KOG1187 Serine/threonine prote 98.3 3.4E-07 7.4E-12 94.0 4.2 39 674-712 61-99 (361)
49 KOG2982 Uncharacterized conser 98.2 1.8E-07 4E-12 87.8 -0.3 86 82-167 69-157 (418)
50 KOG2982 Uncharacterized conser 98.2 3.2E-07 6.9E-12 86.2 0.7 186 130-315 69-263 (418)
51 KOG4579 Leucine-rich repeat (L 98.2 9.9E-08 2.1E-12 79.0 -2.7 82 430-514 29-113 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.1 5E-07 1.1E-11 83.8 -0.4 182 60-241 30-255 (388)
53 COG5238 RNA1 Ran GTPase-activa 98.1 3.9E-07 8.5E-12 84.5 -1.2 65 377-441 211-285 (388)
54 KOG4579 Leucine-rich repeat (L 98.0 5.8E-07 1.3E-11 74.5 -1.8 113 378-494 51-163 (177)
55 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 78.9 8.5 57 376-438 48-104 (426)
56 PRK15386 type III secretion pr 97.9 5.3E-05 1.1E-09 77.1 9.2 52 357-414 53-104 (426)
57 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 52.6 3.4 37 84-121 1-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.7 9.1E-06 2E-10 90.0 0.5 152 60-214 60-230 (699)
59 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 7.9E-10 51.6 3.3 36 109-145 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.5E-09 65.6 4.8 100 481-582 46-149 (233)
61 KOG1644 U2-associated snRNP A' 97.4 0.00028 6E-09 63.2 5.8 86 252-344 41-126 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 3.4E-05 7.3E-10 85.5 -0.2 147 180-353 122-272 (699)
63 KOG4341 F-box protein containi 97.3 1.1E-05 2.4E-10 79.9 -4.2 280 85-367 139-437 (483)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00068 1.5E-08 58.8 7.4 107 78-189 6-112 (129)
65 KOG4341 F-box protein containi 97.3 7.7E-06 1.7E-10 80.9 -6.1 138 327-464 290-438 (483)
66 PF13306 LRR_5: Leucine rich r 97.2 0.00092 2E-08 58.0 6.9 106 102-212 6-111 (129)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00092 2E-08 62.7 2.0 43 79-121 60-104 (260)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0032 7E-08 59.2 3.1 97 481-579 47-149 (260)
69 KOG2123 Uncharacterized conser 96.0 0.00053 1.2E-08 64.5 -3.3 58 60-121 19-76 (388)
70 KOG1947 Leucine rich repeat pr 95.9 0.00083 1.8E-08 73.5 -3.2 61 155-215 242-306 (482)
71 KOG2123 Uncharacterized conser 95.7 0.00073 1.6E-08 63.6 -3.7 81 83-167 18-99 (388)
72 KOG3653 Transforming growth fa 95.4 0.0099 2.1E-07 60.5 2.7 21 691-711 213-233 (534)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0056 1.2E-07 34.0 0.2 12 110-121 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0076 1.7E-07 33.4 0.6 12 551-562 2-13 (22)
75 KOG1947 Leucine rich repeat pr 94.8 0.0033 7.1E-08 68.7 -3.0 189 81-279 185-389 (482)
76 KOG1025 Epidermal growth facto 94.2 0.059 1.3E-06 59.0 4.8 23 690-712 698-721 (1177)
77 KOG4308 LRR-containing protein 93.9 0.00026 5.7E-09 75.1 -13.4 83 382-464 89-184 (478)
78 KOG0473 Leucine-rich repeat pr 92.2 0.0049 1.1E-07 56.6 -5.8 42 79-121 37-78 (326)
79 PLN03224 probable serine/threo 91.9 0.086 1.9E-06 56.9 2.0 24 686-709 143-166 (507)
80 KOG0473 Leucine-rich repeat pr 91.7 0.0054 1.2E-07 56.3 -6.1 87 496-585 37-123 (326)
81 KOG4308 LRR-containing protein 91.3 0.0016 3.5E-08 69.2 -11.7 116 151-267 167-304 (478)
82 PF13504 LRR_7: Leucine rich r 90.8 0.13 2.9E-06 26.3 1.0 13 85-97 2-14 (17)
83 KOG0193 Serine/threonine prote 88.7 0.17 3.7E-06 53.6 0.8 27 678-711 389-415 (678)
84 PLN03225 Serine/threonine-prot 87.9 0.28 6E-06 54.3 1.9 27 686-712 130-156 (566)
85 KOG0196 Tyrosine kinase, EPH ( 86.3 0.35 7.6E-06 52.9 1.6 34 677-710 609-651 (996)
86 PF13516 LRR_6: Leucine Rich r 86.1 0.15 3.2E-06 28.9 -0.7 13 526-538 3-15 (24)
87 smart00370 LRR Leucine-rich re 85.9 0.62 1.3E-05 26.9 1.8 14 549-562 2-15 (26)
88 smart00369 LRR_TYP Leucine-ric 85.9 0.62 1.3E-05 26.9 1.8 14 549-562 2-15 (26)
89 smart00369 LRR_TYP Leucine-ric 84.9 0.91 2E-05 26.2 2.2 14 84-97 2-15 (26)
90 smart00370 LRR Leucine-rich re 84.9 0.91 2E-05 26.2 2.2 14 84-97 2-15 (26)
91 PTZ00284 protein kinase; Provi 80.8 0.57 1.2E-05 50.9 0.4 31 681-711 122-152 (467)
92 KOG3864 Uncharacterized conser 80.6 0.29 6.3E-06 44.5 -1.6 81 381-461 102-185 (221)
93 KOG3864 Uncharacterized conser 80.4 0.25 5.4E-06 44.9 -2.0 33 110-142 103-135 (221)
94 KOG4258 Insulin/growth factor 76.2 1 2.3E-05 49.6 0.7 20 690-709 996-1015(1025)
95 PRK09605 bifunctional UGMP fam 75.4 2.7 5.9E-05 46.4 3.8 33 679-711 324-356 (535)
96 PF08693 SKG6: Transmembrane a 75.4 5.1 0.00011 25.9 3.3 10 635-644 16-25 (40)
97 PTZ00036 glycogen synthase kin 75.1 1.6 3.4E-05 47.0 1.7 25 687-711 65-89 (440)
98 KOG4242 Predicted myosin-I-bin 74.1 9.4 0.0002 39.8 6.7 84 502-585 355-452 (553)
99 KOG0663 Protein kinase PITSLRE 74.0 1.2 2.6E-05 43.9 0.4 22 688-709 76-97 (419)
100 cd05622 STKc_ROCK1 Catalytic d 73.0 1.7 3.8E-05 45.4 1.4 33 680-712 35-67 (371)
101 cd05104 PTKc_Kit Catalytic dom 72.4 2 4.2E-05 45.1 1.6 20 690-709 37-56 (375)
102 PF04478 Mid2: Mid2 like cell 71.6 3.5 7.6E-05 35.7 2.6 30 632-661 50-79 (154)
103 cd05621 STKc_ROCK2 Catalytic d 71.5 2 4.3E-05 44.9 1.4 27 686-712 41-67 (370)
104 smart00365 LRR_SD22 Leucine-ri 70.9 3.8 8.1E-05 23.7 1.8 14 549-562 2-15 (26)
105 KOG0194 Protein tyrosine kinas 70.1 2.6 5.6E-05 44.8 1.8 19 693-711 162-180 (474)
106 KOG2052 Activin A type IB rece 69.0 3 6.6E-05 42.9 2.0 23 690-712 213-235 (513)
107 KOG1035 eIF-2alpha kinase GCN2 68.7 1.8 4E-05 50.2 0.4 21 688-708 479-499 (1351)
108 cd05596 STKc_ROCK Catalytic do 68.6 1.9 4.1E-05 45.1 0.5 26 686-711 41-66 (370)
109 KOG0192 Tyrosine kinase specif 68.0 2.9 6.3E-05 43.2 1.7 18 694-711 47-64 (362)
110 cd05105 PTKc_PDGFR_alpha Catal 67.3 3.2 6.9E-05 43.9 1.9 20 690-709 39-58 (400)
111 cd05106 PTKc_CSF-1R Catalytic 67.2 3 6.5E-05 43.7 1.7 21 689-709 39-59 (374)
112 KOG4242 Predicted myosin-I-bin 65.9 40 0.00086 35.4 9.0 108 108-217 165-281 (553)
113 PHA03209 serine/threonine kina 64.4 4.5 9.7E-05 42.0 2.4 25 687-711 65-89 (357)
114 KOG1095 Protein tyrosine kinas 64.0 3.9 8.4E-05 47.5 1.8 21 691-711 695-715 (1025)
115 cd05107 PTKc_PDGFR_beta Cataly 63.9 4.3 9.3E-05 42.9 2.1 21 690-710 39-59 (401)
116 smart00364 LRR_BAC Leucine-ric 63.9 5 0.00011 23.2 1.4 13 550-562 3-15 (26)
117 PLN00034 mitogen-activated pro 63.4 4.3 9.4E-05 42.1 2.0 18 693-710 79-96 (353)
118 smart00368 LRR_RI Leucine rich 63.0 6.6 0.00014 23.1 1.9 14 84-97 2-15 (28)
119 PHA03210 serine/threonine kina 62.0 4.7 0.0001 44.1 2.1 23 687-709 147-169 (501)
120 PF15102 TMEM154: TMEM154 prot 60.5 7.5 0.00016 33.5 2.5 6 634-639 59-64 (146)
121 KOG0600 Cdc2-related protein k 58.9 2.8 6.1E-05 43.8 -0.3 17 693-709 122-138 (560)
122 cd05055 PTKc_PDGFR Catalytic d 58.6 5.4 0.00012 40.2 1.7 21 689-709 36-56 (302)
123 PTZ00382 Variant-specific surf 58.0 18 0.00038 29.1 4.1 8 633-640 68-75 (96)
124 TIGR01982 UbiB 2-polyprenylphe 56.7 11 0.00024 40.3 3.7 24 689-713 119-142 (437)
125 KOG0605 NDR and related serine 55.9 8.2 0.00018 40.9 2.4 27 686-712 139-165 (550)
126 KOG1167 Serine/threonine prote 54.2 3.5 7.6E-05 42.0 -0.5 27 683-709 31-57 (418)
127 PHA03211 serine/threonine kina 52.7 8.8 0.00019 41.4 2.1 23 689-711 170-192 (461)
128 KOG0986 G protein-coupled rece 52.7 8.7 0.00019 39.8 1.9 23 689-711 186-208 (591)
129 KOG1026 Nerve growth factor re 51.9 11 0.00024 42.2 2.7 21 691-711 489-509 (774)
130 KOG1166 Mitotic checkpoint ser 51.1 7.9 0.00017 44.9 1.5 25 688-712 698-722 (974)
131 PF14575 EphA2_TM: Ephrin type 49.8 6.6 0.00014 29.8 0.4 16 677-692 56-71 (75)
132 KOG0694 Serine/threonine prote 49.4 11 0.00023 41.3 2.1 24 688-711 368-391 (694)
133 PF02439 Adeno_E3_CR2: Adenovi 49.2 6.6 0.00014 24.9 0.3 9 651-659 24-32 (38)
134 PHA03212 serine/threonine kina 48.0 12 0.00026 39.5 2.2 23 688-710 92-114 (391)
135 TIGR00864 PCC polycystin catio 47.0 11 0.00024 48.3 2.0 32 531-562 1-32 (2740)
136 PF05454 DAG1: Dystroglycan (D 44.8 7.2 0.00016 38.4 0.0 12 674-685 190-201 (290)
137 KOG4257 Focal adhesion tyrosin 44.7 11 0.00023 40.9 1.2 19 692-710 393-411 (974)
138 KOG3763 mRNA export factor TAP 41.5 13 0.00028 39.6 1.3 35 501-535 218-254 (585)
139 PF01034 Syndecan: Syndecan do 41.1 8.8 0.00019 27.7 -0.0 6 651-656 30-35 (64)
140 KOG1024 Receptor-like protein 40.7 42 0.00091 34.4 4.5 22 690-711 286-307 (563)
141 KOG3763 mRNA export factor TAP 35.5 19 0.00042 38.4 1.4 63 106-170 216-284 (585)
142 smart00367 LRR_CC Leucine-rich 34.9 26 0.00056 20.0 1.3 12 525-536 2-13 (26)
143 PHA03207 serine/threonine kina 34.7 23 0.00051 37.2 2.0 22 689-710 93-114 (392)
144 KOG0581 Mitogen-activated prot 34.4 29 0.00062 35.1 2.3 28 677-711 75-102 (364)
145 KOG0032 Ca2+/calmodulin-depend 32.4 30 0.00064 36.2 2.2 19 693-711 40-58 (382)
146 KOG0592 3-phosphoinositide-dep 31.5 27 0.00058 37.3 1.6 22 688-709 73-94 (604)
147 KOG4236 Serine/threonine prote 29.0 27 0.00058 37.1 1.1 17 693-709 569-585 (888)
148 KOG4279 Serine/threonine prote 28.6 29 0.00064 38.3 1.4 18 691-708 578-595 (1226)
149 PRK04750 ubiB putative ubiquin 27.9 44 0.00095 36.7 2.6 24 688-712 120-144 (537)
150 KOG1006 Mitogen-activated prot 27.9 11 0.00025 36.2 -1.6 16 694-709 70-85 (361)
151 KOG1989 ARK protein kinase fam 27.4 38 0.00082 38.2 2.0 21 693-713 42-62 (738)
152 KOG0584 Serine/threonine prote 27.0 28 0.0006 37.8 0.9 17 693-709 45-61 (632)
153 PTZ00267 NIMA-related protein 22.4 42 0.0009 36.5 1.2 21 690-710 69-89 (478)
154 PF02009 Rifin_STEVOR: Rifin/s 21.0 63 0.0014 32.2 2.0 9 653-661 277-285 (299)
155 PF08374 Protocadherin: Protoc 20.3 1.3E+02 0.0028 28.0 3.6 15 632-646 36-50 (221)
156 KOG0664 Nemo-like MAPK-related 20.2 62 0.0014 31.3 1.7 21 691-711 56-76 (449)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-83 Score=753.12 Aligned_cols=686 Identities=33% Similarity=0.513 Sum_probs=597.6
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCC
Q 041089 7 LNSHSCFADSNEMDRLALLAIKSQLQDPLGVTKSWNNSINLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFL 86 (713)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L 86 (713)
+.+..+++...++|+.||++||+.+.+|.+.+.+|+...+||.|.||.|+. .++|+.|||+++.+.+.+++++..+++|
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L 95 (968)
T PLN00113 17 FFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYI 95 (968)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCC
Confidence 334445555577899999999999988888889998888999999999986 4799999999999999999999999999
Q ss_pred CEEECCCCCCCccCchhhh-ccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccC
Q 041089 87 RVINLANNRFHGQIPKEVG-RLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYD 165 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~ 165 (713)
++|+|++|++.+.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 9999999999999998765 999999999999999988885 5689999999999999999999999999999999999
Q ss_pred ccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCC
Q 041089 166 NQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLP 245 (713)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 245 (713)
|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccc
Q 041089 246 VCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFIT 325 (713)
Q Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 325 (713)
..+. ++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ ..+.
T Consensus 254 ~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~ 326 (968)
T PLN00113 254 SSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------KIPV 326 (968)
T ss_pred hhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------cCCh
Confidence 8887 89999999999999999999999999999999999999999999999999999999999999876 4556
Q ss_pred cccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccc
Q 041089 326 LLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRN 405 (713)
Q Consensus 326 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 405 (713)
.+..+++|+.|++++|.+.+.+|..+.... +|+.+++++|.+++.+|.++..+++|+.|++++|.+.+.+|..+..+++
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 678899999999999999999999888775 8999999999999999999999999999999999999999999999999
Q ss_pred cceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhccc
Q 041089 406 LQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLS 485 (713)
Q Consensus 406 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls 485 (713)
|++|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. ... ++.|+++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~-L~~L~ls 483 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKR-LENLDLS 483 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-ccc-ceEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999988887653 333 4589999
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccC
Q 041089 486 ENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI 565 (713)
Q Consensus 486 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 565 (713)
+|++++.+|..+.++++|++|++++|++.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|||++|++++.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCEEeCCCccCcccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccccCCccccceeeEEEEehhhHHHH
Q 041089 566 PIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLCGGLGELHLPACHSVGRRKETITLLKVVIPVIGLVL 645 (713)
Q Consensus 566 p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~ 645 (713)
|..+..+++|+++++++|++.|.+|..+.+.++....+.||+.+|+..+....++|.... +.....++++++++++++
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~ 641 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR--KTPSWWFYITCTLGAFLV 641 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc--ccceeeeehhHHHHHHHH
Confidence 999999999999999999999999999999889999999999999876444456775321 111111222222222222
Q ss_pred HHHHHHHhhhhhhhccc-cccch--hhhhcc------cCccccHHHHHHHHhccCcCCeeccCCCceEEEEEeC
Q 041089 646 ILLMCFIVVYTRRTKLA-HKLSS--ALLMEQ------QFPIVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 646 ~l~~~~~~~~~~~~~~~-~~~~~--~~~~~~------~~~~~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+++++++++++++++.. .+..+ ...+.. ....++++++ .+.|.+.++||+|+||.||||+..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~ 712 (968)
T PLN00113 642 LALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI---LSSLKEENVISRGKKGASYKGKSI 712 (968)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEEC
Confidence 22222222222222211 11111 001110 1122344444 345788999999999999999874
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-60 Score=561.35 Aligned_cols=515 Identities=34% Similarity=0.533 Sum_probs=485.6
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCcccc-CCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLS-RCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
.+++.|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+. ++++|++|++++|++++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4789999999999999999999999999999999999999998865 999999999999999988886 5689999999
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcc
Q 041089 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKG 242 (713)
Q Consensus 163 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 242 (713)
+++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCcc
Q 041089 243 SLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLD 322 (713)
Q Consensus 243 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (713)
.+|..+. .+++|++|++++|.+++.+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .
T Consensus 227 ~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------~ 299 (968)
T PLN00113 227 EIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG------E 299 (968)
T ss_pred cCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc------C
Confidence 9999887 89999999999999999999999999999999999999999999999999999999999999876 4
Q ss_pred ccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCccccc
Q 041089 323 FITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGE 402 (713)
Q Consensus 323 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 402 (713)
++..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 566778899999999999999999999888775 8999999999999999999999999999999999999999999999
Q ss_pred ccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchh
Q 041089 403 LRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLL 482 (713)
Q Consensus 403 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l 482 (713)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..++.+. .|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ-ML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc-EE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887777765 99
Q ss_pred cccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCccc
Q 041089 483 DLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562 (713)
Q Consensus 483 ~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 562 (713)
++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|.++
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 999999999888765 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCCCEEeCCCccCcccCCCC-CCCCCCCcccccCCCCCC
Q 041089 563 GQIPIHLQDLPFLEYLNLSYNHFEGEVPKK-GVFSNETRISLTGNEQLC 610 (713)
Q Consensus 563 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc 610 (713)
+.+|..+..+++|+.|++++|+++|.+|.. ..+..++.+++.+|+..+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999975 446678899999998654
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.1e-43 Score=331.79 Aligned_cols=474 Identities=29% Similarity=0.443 Sum_probs=245.8
Q ss_pred cEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEcc
Q 041089 61 RVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVH 140 (713)
Q Consensus 61 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 140 (713)
..+.+++++|.+.. +.+++.++..|.+|++++|++. ..|.+++.+..++.|+.+.|+++ .+|+.++.+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 46678888888876 4577888899999999999888 78888899999999999998888 677777776666666666
Q ss_pred CCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCC
Q 041089 141 TNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMF 220 (713)
Q Consensus 141 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 220 (713)
+|.+. ..|+.++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|++. ..|+..-+++.|++|+...|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N------ 193 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN------ 193 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchh------
Confidence 66665 33444555555555555555555 44555555555555555555555 22332323555555555444
Q ss_pred cccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCC
Q 041089 221 PLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSL 300 (713)
Q Consensus 221 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 300 (713)
.+. .+|..++ .+.+|..|++..|++. .+| +|..|+.|++++++.|++..........+
T Consensus 194 ------------------~L~-tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 194 ------------------LLE-TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred ------------------hhh-cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 333 4455444 4555555555555554 333 45555556666666555543322223355
Q ss_pred CCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCC
Q 041089 301 PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLF 380 (713)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 380 (713)
+++..||+..|++.. .+..+.-+.+|.+||+++|.++ .+|..++++ .|+.+.+.+|.+.. +...+-+..
T Consensus 252 ~~l~vLDLRdNklke-------~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrT-iRr~ii~~g 320 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKE-------VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRT-IRREIISKG 320 (565)
T ss_pred ccceeeecccccccc-------CchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHH-HHHHHHccc
Confidence 555555555555432 1112222233333333333332 233333333 44444444444331 111000000
Q ss_pred C---CCEE-------eccCCc---cc-cc----CCcccccccccceeecccccccccCCccccCCC---CCCEEEccCCc
Q 041089 381 N---LNGL-------GLEYNQ---LT-GT----IPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLT---LLNILQLGFNK 439 (713)
Q Consensus 381 ~---L~~L-------~L~~n~---l~-~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~ 439 (713)
. |++| .++.-+ -+ +. .........+.++|++++-+++ .+|+...... -...++++.|+
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccch
Confidence 0 0000 000000 00 00 0011122344555555555555 3333222111 14455555555
Q ss_pred ccccCChhhhcCCCCcEE-eCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCc
Q 041089 440 LQGSIPSYLGKCQNLMQL-SAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIP 518 (713)
Q Consensus 440 l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 518 (713)
+. ++|..+..+..+++. .+++|.+ +.+|..+.+++.+. .|++++|.+. .+|.+++.+..|+.||+|.|+|. .+|
T Consensus 400 L~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt-~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 400 LC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLT-FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred Hh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcce-eeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 55 455544444433332 2333333 24444444444443 5555555554 45555555555566666666555 455
Q ss_pred ccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCc
Q 041089 519 VTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFE 586 (713)
Q Consensus 519 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~ 586 (713)
.++-.+..++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++.+|++|++++|+|.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 55544555555555555555444445666666666666666665 55556666666666666666665
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.5e-42 Score=324.84 Aligned_cols=459 Identities=25% Similarity=0.384 Sum_probs=354.5
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
..++.+++..+.+.. .|++++.+..++.|+.++|+++ .+|..++.+.+|+.|++++|.+. .+|++++.+..|..++.
T Consensus 68 ~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 357889999999886 6789999999999999999998 89999999999999999999999 88999999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
.+|+++ ..|.++.++.+|..+++.+|++....| ..-+++.|++||...|.++ .+|+.++.+.+|+.|++..|.+. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 999987 567788999999999999999995544 4555999999999999988 89999999999999999999998 4
Q ss_pred CcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCC
Q 041089 220 FPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNS 299 (713)
Q Consensus 220 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 299 (713)
.| .|..|+.|.++++..|.+. .+|.....+++++.+||+++|+++ ..|..+.-+.+|+.||+++|.+++ .|..+++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 55 8999999999999999998 899999889999999999999999 678899999999999999999985 5678999
Q ss_pred CCCCCeEEcCCCcccCcCCCCc-----cccccccCCCCCcEEeeeccc----cccccChhhh---hccccccEEEccCCc
Q 041089 300 LPNLSKLYLGRNNLGTRTSTDL-----DFITLLTNCSKLVKLGLVFNR----FGGALPHSIA---NLSTTMTLIAMAGNQ 367 (713)
Q Consensus 300 l~~L~~L~l~~n~l~~~~~~~~-----~~~~~l~~~~~L~~L~l~~n~----~~~~~~~~~~---~~~~~L~~l~l~~n~ 367 (713)
+ +|+.|-+.+|.+..+...-+ .+...+.. ..+.=.++... -.+..+.+.+ ....+.+.|+++.-+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs--~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS--KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH--hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 9 99999999998754211000 00000000 00000000000 0001111111 111256667777777
Q ss_pred eeecCCccccCCCC---CCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccC
Q 041089 368 ISGTIPPEIRNLFN---LNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSI 444 (713)
Q Consensus 368 l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 444 (713)
++ .+|........ .+..+++.|++. ++|..+..+..+.+.-+..|+..+.+|..+..+++|..|++++|-+. .+
T Consensus 374 lt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 374 LT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence 77 44544333322 678888888887 67777777766665444444444477788888888888888888776 77
Q ss_pred ChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCC
Q 041089 445 PSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSAC 524 (713)
Q Consensus 445 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 524 (713)
|..++.+..|+.|+++.|+|. .+|..+.....+. .+-.++|++....|..+.+|.+|+.|||.+|.+. .+|..+++|
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE-tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE-TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred chhhhhhhhhheecccccccc-cchHHHhhHHHHH-HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 888888888888888888887 7777766555443 5666778887655666888888888888888887 677788888
Q ss_pred CCCceeeCcCCccc
Q 041089 525 TTLEYLLMQGNSFN 538 (713)
Q Consensus 525 ~~L~~L~ls~n~l~ 538 (713)
++|++|++++|.|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 88888888888876
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6e-38 Score=311.93 Aligned_cols=371 Identities=23% Similarity=0.254 Sum_probs=207.8
Q ss_pred EEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC
Q 041089 160 RLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239 (713)
Q Consensus 160 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 239 (713)
.||+++|.++..-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.++..-...+..++.|+.|||+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 3444444444444444444444444444444444 444433333444444444444444444444444445555555554
Q ss_pred CcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCC
Q 041089 240 FKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTST 319 (713)
Q Consensus 240 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (713)
++ ++|..-+..-.+++.|+|+.|.|+..-...|..+.+|..|.|++|+++...+..|..+++|+.|+|..|.+..+..
T Consensus 161 is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~- 238 (873)
T KOG4194|consen 161 IS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG- 238 (873)
T ss_pred hh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh-
Confidence 44 4444333344567777777777776666777777788888888888877777777777777777777776643110
Q ss_pred CccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcc
Q 041089 320 DLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPA 399 (713)
Q Consensus 320 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 399 (713)
..|.++++|+.|.+..|.+...-...
T Consensus 239 ------------------------------------------------------ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 239 ------------------------------------------------------LTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ------------------------------------------------------hhhcCchhhhhhhhhhcCcccccCcc
Confidence 12333444444444444444333344
Q ss_pred cccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCccccc
Q 041089 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLS 479 (713)
Q Consensus 400 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 479 (713)
|..+.++++|+|..|+++..-..++.+++.|+.|++|+|.|...-++.+..+++|++|+|++|+++ .++++-+.....+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQL 343 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHh
Confidence 444445555555555444443344444555555555555554444444445555555555555554 3333333333333
Q ss_pred chhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcc---cCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeC
Q 041089 480 KLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV---TLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDL 556 (713)
Q Consensus 480 ~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L 556 (713)
+.|+|+.|++...-...|..+++|++|||++|.++..+.+ .|..+++|+.|++.+|++..+...+|.++++|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 4555555555444444566667777777777776655543 4566777777777777777555567777777777777
Q ss_pred CCCcccccCCccCCCCCCCCEEeCCCccCcccC
Q 041089 557 SCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEV 589 (713)
Q Consensus 557 s~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 589 (713)
.+|.|-.+-|..|..+ .|+.|-+..-.+.+.+
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 7777777777777666 6666666555555444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=306.72 Aligned_cols=390 Identities=21% Similarity=0.225 Sum_probs=327.7
Q ss_pred EEEEECCCCCcceecCccccCC--CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 62 VTELDLESQNIGGFLSPYIGNL--SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 62 v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
..-||.+...+...--..+..+ +.-+.||+++|+++..-+..|.++++|+.+++.+|.++ .+|....-..+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 4445555555544322222221 34567999999999888999999999999999999998 88887777778999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
.+|.++..-.+.+..++.|++||||.|.++......|..-.++++|+|++|.++..-...|..+.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99999988889999999999999999999977667788888999999999999977778899999999999999999988
Q ss_pred CcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCC
Q 041089 220 FPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNS 299 (713)
Q Consensus 220 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 299 (713)
.+..|.+++.|+.|+|..|++. .+.-..+.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..++.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 8888889999999999999876 333333458999999999999999888888999999999999999999888888999
Q ss_pred CCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCC
Q 041089 300 LPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNL 379 (713)
Q Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l 379 (713)
++.|+.|++++|.+..+..+. ..-+++|+.|++++|+++.--+..+..+. .|+.|.++.|.+...-...|..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~------WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDS------WSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred cchhhhhccchhhhheeecch------hhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHh
Confidence 999999999999998754444 44578999999999999866566666554 89999999999987777788899
Q ss_pred CCCCEEeccCCcccccCC---cccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcE
Q 041089 380 FNLNGLGLEYNQLTGTIP---PAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQ 456 (713)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 456 (713)
.+|++|||++|.++..+. ..|.++++|+.|++.+|++..+.-.+|..++.|++|||.+|.+...-|.+|..+ .|++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhh
Confidence 999999999999986543 457789999999999999986655789999999999999999988888899888 8888
Q ss_pred EeCCC
Q 041089 457 LSAPN 461 (713)
Q Consensus 457 L~l~~ 461 (713)
|.+..
T Consensus 444 Lv~nS 448 (873)
T KOG4194|consen 444 LVMNS 448 (873)
T ss_pred hhhcc
Confidence 87644
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=325.93 Aligned_cols=482 Identities=29% Similarity=0.370 Sum_probs=299.7
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
+|.+...+.- +|..+..-.+++.|++++|-+-...-+.+.+.-+|+.||+++|.+. ..|..+..+..|+.|+++.|.+
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 4555555554 4455555566888888888765322234445556888888888877 7777788888888888888777
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSV 224 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 224 (713)
. ..|....++.+|+++.|..|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.++.+..++|.....++.
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 6 34567777888888888888777 67778888888888888888877 6777777777777788887732222222
Q ss_pred cCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCC
Q 041089 225 CNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLS 304 (713)
Q Consensus 225 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 304 (713)
. .++.+++..|.+.+.++..+. .+.. .|+|++|.+. . ..+.++.+|+.+....|+++... -.-++|+
T Consensus 156 --~-~ik~~~l~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~ 222 (1081)
T KOG0618|consen 156 --T-SIKKLDLRLNVLGGSFLIDIY-NLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLT 222 (1081)
T ss_pred --c-cchhhhhhhhhcccchhcchh-hhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence 1 266777777777777776554 3333 4777777766 2 34566777777777777665322 1346677
Q ss_pred eEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCE
Q 041089 305 KLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNG 384 (713)
Q Consensus 305 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 384 (713)
.|+.+.|.+..... -....+|++++++.|+++ .+|.|+.... +++.+....|+++ .+|..+...++|+.
T Consensus 223 ~L~a~~n~l~~~~~--------~p~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDV--------HPVPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred eeeeccCcceeecc--------ccccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHH
Confidence 77777776653211 112245666666666665 4455555544 6666666666663 55555666666666
Q ss_pred EeccCCcccccCCcccccccccceeecccccccccCCcc-ccCCCC-CCEEEccCCcccccCCh-hhhcCCCCcEEeCCC
Q 041089 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDS-IGNLTL-LNILQLGFNKLQGSIPS-YLGKCQNLMQLSAPN 461 (713)
Q Consensus 385 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~-L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~l~~ 461 (713)
|....|.+. -+|....++.+|++|+|..|++. ..|+. +.-... |+.|+.+.|.+. ..|. .=...+.|+.|.+.+
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhc
Confidence 666666665 34455555666666666666665 33332 222222 455555555554 2221 112345666667777
Q ss_pred CCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccC
Q 041089 462 NQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSI 541 (713)
Q Consensus 462 n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~ 541 (713)
|.+++..-+-+.....+ ++|+|++|++.......+.++..|++|+||+|+++ .+|..+..|..|++|...+|++. ..
T Consensus 369 N~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred Ccccccchhhhccccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 76665544444444444 36677777666333345566666777777777766 56666666677777777666665 45
Q ss_pred CcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCcc
Q 041089 542 PQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNH 584 (713)
Q Consensus 542 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~ 584 (713)
| .+..++.|+.+|+|.|+++...-......++|++||+++|.
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5 56666777777777777664332222222667777777776
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=325.29 Aligned_cols=486 Identities=25% Similarity=0.297 Sum_probs=236.7
Q ss_pred EEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccC
Q 041089 62 VTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHT 141 (713)
Q Consensus 62 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 141 (713)
++.|+++.|.+-...-+...+.-+|+.||+++|++. ..|..+..+++|+.|+++.|.+. .+|.+..++.+|++|+|..
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 444555555443322233333444555555555554 45555555555555555555555 4555555555555555555
Q ss_pred CccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCc
Q 041089 142 NNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221 (713)
Q Consensus 142 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 221 (713)
|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.++.+..++|... ..++... ++.+++..|.+.+.++
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchh
Confidence 5443 44555555555555555555555 44555555555555555555111 1122222 5555555555555555
Q ss_pred ccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCC
Q 041089 222 LSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLP 301 (713)
Q Consensus 222 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 301 (713)
..+..++. .+++..|.+. ... + ..+++|+++....|++.... -.-++|+.|+.++|.++...+. ..-.
T Consensus 174 ~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~ 241 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPL 241 (1081)
T ss_pred cchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccc
Confidence 55554444 4555555544 111 1 14455555555555544221 1124555555555555422211 1123
Q ss_pred CCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCC
Q 041089 302 NLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFN 381 (713)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~ 381 (713)
+|+.++++.|+++. .+.++..|.+|+.++..+|+++ .+|..+.... +|+.+....|.+. -+|......+.
T Consensus 242 nl~~~dis~n~l~~-------lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~s 311 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-------LPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKS 311 (1081)
T ss_pred cceeeecchhhhhc-------chHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccce
Confidence 45555555555543 2244455555555555555553 4444444332 5555555555554 33444455555
Q ss_pred CCEEeccCCcccccCCcccccccc-cceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCC
Q 041089 382 LNGLGLEYNQLTGTIPPAIGELRN-LQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAP 460 (713)
Q Consensus 382 L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~ 460 (713)
|++|+|..|++....+..+..... |..|..+.|.+.......=...+.|+.|++.+|.++...-..+.+.++|+.|+|+
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 555555555555322222222222 4445555554442211111223445555555555555444445555555555555
Q ss_pred CCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCccccc
Q 041089 461 NNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGS 540 (713)
Q Consensus 461 ~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~ 540 (713)
+|++. ++|+....-...++.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++..
T Consensus 392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 392 YNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred ccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 55554 555544444444445555555555 44555555555555555555555 344 455555555555555555432
Q ss_pred C-CcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCc
Q 041089 541 I-PQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYN 583 (713)
Q Consensus 541 ~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n 583 (713)
. |.... .++|++||+++|.-.......|..+.++...++.-|
T Consensus 468 ~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 468 TLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 2 22221 155555555555432222333444444444444433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=1.4e-34 Score=289.98 Aligned_cols=365 Identities=26% Similarity=0.399 Sum_probs=221.7
Q ss_pred CCCCCCEEECCCCCCC-ccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 82 NLSFLRVINLANNRFH-GQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 82 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
-++..|-.|+++|.++ +..|..+..+++++.|.|...++. .+|..++.|.+|++|.+++|++... -..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence 4556666677777776 467777777777777777777766 6677777777777777777666532 234566677777
Q ss_pred EeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC
Q 041089 161 LSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239 (713)
Q Consensus 161 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 239 (713)
+++.+|++.. -+|..+..+..|..|||++|++. ..|..+..-.++-.|+|++|++.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie---------------------- 139 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE---------------------- 139 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc----------------------
Confidence 7777777642 45666777777777777777776 66666666666666666666655
Q ss_pred CcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCC
Q 041089 240 FKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTST 319 (713)
Q Consensus 240 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (713)
.||..++.++..|-.|+|++|++. .+|..+..+..|+.|+|++|.+...--..+..+++|+.|.+++.
T Consensus 140 ---tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T-------- 207 (1255)
T KOG0444|consen 140 ---TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT-------- 207 (1255)
T ss_pred ---cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc--------
Confidence 555555556666667777777766 45666777777777777777664221111222222333333222
Q ss_pred CccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcc
Q 041089 320 DLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPA 399 (713)
Q Consensus 320 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 399 (713)
+-+ ...+|.++..+.+|..+|++.|.+. .+|+.
T Consensus 208 ----------------------qRT------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 208 ----------------------QRT------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred ----------------------cch------------------------hhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 111 0134556666677777777777776 66777
Q ss_pred cccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCC-CCCCccccCcccc
Q 041089 400 IGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLN-GTLPPQIFGITPL 478 (713)
Q Consensus 400 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~l 478 (713)
+.++++|+.|+||+|+++ .+........+|++|++|.|+++ .+|.++..+++|+.|.+.+|++. .-||.+++.+..+
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 777777777777777776 33344555667777777777777 67777777777777777777665 2244444444333
Q ss_pred cchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCC
Q 041089 479 SKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGN 535 (713)
Q Consensus 479 ~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n 535 (713)
. .+..++|.+. ..|..+++|..|+.|.|++|++. .+|+.+.-++.|+.||+..|
T Consensus 319 e-vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 319 E-VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred H-HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 2 3444444443 34444444444444444444443 34444444444444444444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.8e-34 Score=284.99 Aligned_cols=369 Identities=25% Similarity=0.362 Sum_probs=245.3
Q ss_pred CCcEEEccCCCCC-CCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEe
Q 041089 181 ALQTFDIAGNKLD-GRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLV 259 (713)
Q Consensus 181 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 259 (713)
-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+ .+|++|.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l-------------------------qkLEHLs 61 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL-------------------------QKLEHLS 61 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH-------------------------hhhhhhh
Confidence 3444555555555 244555555555555555554443 344444444 4455555
Q ss_pred CCCCcCcccCCccCcCCCCCcEEeccCccccc-ccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEee
Q 041089 260 VAQNNLTGFLPQSLSNASKLEWLELNENHFSG-QVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGL 338 (713)
Q Consensus 260 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l 338 (713)
+.+|++. .+...+..++.|+.+.+..|++.. .+|..+..+..|+.|++++|++. +.+..+..-+++-.|++
T Consensus 62 ~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 62 MAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-------hcchhhhhhcCcEEEEc
Confidence 5555444 223344445555555555554432 24444555555555555555554 23344445555556666
Q ss_pred eccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeeccccccc-
Q 041089 339 VFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIR- 417 (713)
Q Consensus 339 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 417 (713)
++|++. .+|..++-....|-.|++++|.+. .+|+.+..+..|++|+|++|.+.-.-...+..+++|+.|.+++.+-+
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 666654 455444433346777778877776 56666777888888888888776443344556677788888776533
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccc
Q 041089 418 GIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEV 497 (713)
Q Consensus 418 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~ 497 (713)
.-+|.++..+.+|..+|+|.|++. ..|.++.++++|+.|+|++|+++ .+.........+ +.|++|.|+++ .+|.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchHHH
Confidence 357778888888888888888887 77888888888888888888887 555544444444 37888888887 788888
Q ss_pred cCCCCCcEEeCCCCcCCc-cCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCC
Q 041089 498 GNLKSLVQLDISRNHFSN-EIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLE 576 (713)
Q Consensus 498 ~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 576 (713)
..++.|+.|++.+|+++- -+|..++.+..|+++..++|.+. .+|+.+..+..|+.|.|++|++. .+|+.+.-++.|+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 888888888888887753 36888888888888888888876 78888888888888888888887 6788888888888
Q ss_pred EEeCCCccCcccCCC
Q 041089 577 YLNLSYNHFEGEVPK 591 (713)
Q Consensus 577 ~L~ls~n~l~~~~p~ 591 (713)
.||+..|+-.-..|.
T Consensus 366 vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPK 380 (1255)
T ss_pred eeeccCCcCccCCCC
Confidence 888888875544443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.7e-23 Score=242.48 Aligned_cols=364 Identities=18% Similarity=0.195 Sum_probs=205.9
Q ss_pred CcEEEEECCCCCcce--ecCccccCCCCCCEEECCCCC------CCccCchhhhccC-CCCeeeecCCCCcccCCccccC
Q 041089 60 QRVTELDLESQNIGG--FLSPYIGNLSFLRVINLANNR------FHGQIPKEVGRLF-RLETIVLSNNSFSGKIPTNLSR 130 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~ 130 (713)
.+|..+.+.-..+.. ..+.+|..+++|+.|.+..+. +...+|..|..++ +|++|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456655554333332 234568888999999886653 3345677777764 5888888888776 667766 4
Q ss_pred CCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEe
Q 041089 131 CFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLG 210 (713)
Q Consensus 131 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 210 (713)
..+|+.|++.+|.+. .++..+..+++|+.|+|+++.....+| .++.+++|++|++++|.....+|..++++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 677888888887765 355566777778888887765444555 367777777887777765556777777777777777
Q ss_pred CCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccc
Q 041089 211 TSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFS 290 (713)
Q Consensus 211 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 290 (713)
+++|...+.+|..+ ++++|+.|++++|...+.+|. ..++|+.|++++|.+. .+|..+ .+++|+.|++.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 77766555566544 566666666666654444443 2345566666665554 233332 3444555544432211
Q ss_pred cccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceee
Q 041089 291 GQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISG 370 (713)
Q Consensus 291 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 370 (713)
.. ...+..+ .......+++|+.|++++|...+.+|..+..+. +|+.|++++|...+
T Consensus 761 ~l-~~~~~~l----------------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 761 KL-WERVQPL----------------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLE 816 (1153)
T ss_pred hc-ccccccc----------------------chhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcC
Confidence 00 0000000 000011123455555555544444555544433 55555555554333
Q ss_pred cCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhc
Q 041089 371 TIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGK 450 (713)
Q Consensus 371 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 450 (713)
.+|..+ .+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+..+++|++|++++|+-...+|..+..
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 444433 4556666666665433333332 245566666666655 45555566666666666654333345555555
Q ss_pred CCCCcEEeCCCCC
Q 041089 451 CQNLMQLSAPNNQ 463 (713)
Q Consensus 451 ~~~L~~L~l~~n~ 463 (713)
+++|+.+++++|.
T Consensus 892 L~~L~~L~l~~C~ 904 (1153)
T PLN03210 892 LKHLETVDFSDCG 904 (1153)
T ss_pred ccCCCeeecCCCc
Confidence 5666666666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-22 Score=239.85 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=67.7
Q ss_pred cchhhcCcC-CCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccC
Q 041089 148 IQAIIGNWL-KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCN 226 (713)
Q Consensus 148 ~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 226 (713)
+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .++..+..+++|+.|+++++.....+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 344444432 3566666555554 444444 3455666666666555 4455555556666666655543334442 444
Q ss_pred CCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc
Q 041089 227 ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH 288 (713)
Q Consensus 227 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 288 (713)
+++|+.|++++|.....+|..+. .+++|+.|++++|.....+|..+ ++++|+.|++++|.
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 55555555555544444554443 45555555555543333344333 44555555555543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.8e-25 Score=212.28 Aligned_cols=279 Identities=20% Similarity=0.189 Sum_probs=198.6
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecC-CCCcccCCccccCCCCCcEEE
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSN-NSFSGKIPTNLSRCFNLIDFW 138 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 138 (713)
...++|+|..|.|+.+.+.+|+.+++||+||||+|+|+.+-|++|..+++|..|-+-+ |+++......|.++..|+-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999988876666 899966667789999999999
Q ss_pred ccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC------------CCCccccCCCCC
Q 041089 139 VHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG------------RIPDSLGQLRNL 206 (713)
Q Consensus 139 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~L 206 (713)
+..|++.-...+.|..+++|..|.+.+|.+...-...|..+..++++.+..|.+.. ..|.+++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999999999999999999999999999985544588999999999998887431 112222222222
Q ss_pred CEEeCCCCcCcCCCcccccC-CCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEecc
Q 041089 207 NYLGTSENDFSGMFPLSVCN-ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELN 285 (713)
Q Consensus 207 ~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 285 (713)
.-..+.+.++...-+..+.. ...+..-..+.+...+..|..-+..+++|++|++++|+++.+-+.+|.....+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 22222222222221111111 11111111223333445555555577777777777777777777777777777777777
Q ss_pred CcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccc
Q 041089 286 ENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFG 344 (713)
Q Consensus 286 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 344 (713)
.|++...-...|.++..|+.|++.+|+++.+. +..+.....|.+|.+-.|.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~------~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA------PGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEe------cccccccceeeeeehccCccc
Confidence 77776666666777777777777777776633 334445566667777666554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=7.2e-25 Score=209.54 Aligned_cols=394 Identities=21% Similarity=0.227 Sum_probs=209.2
Q ss_pred CCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCC-CcCcCCCcccccCCCcceEEEcc
Q 041089 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSE-NDFSGMFPLSVCNISSLDEAYLF 236 (713)
Q Consensus 158 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~ 236 (713)
-..++|..|.|+...+..|..+++|+.|||++|.|+.+-|++|..+.+|..|-+.+ |+++
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~------------------- 129 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT------------------- 129 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-------------------
Confidence 34455555555544455555555555555555555544455555555544444333 4444
Q ss_pred CCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCc
Q 041089 237 KNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTR 316 (713)
Q Consensus 237 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 316 (713)
.+|...+.++..++.|.+.-|++.....+.|..++++..|.+.+|.+..+....|..+..++.+.+..|.+-..
T Consensus 130 ------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 130 ------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred ------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 44444444444555555555555444444555555555555555555443333455555555555444432110
Q ss_pred ------CCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCC-ccccCCCCCCEEeccC
Q 041089 317 ------TSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIP-PEIRNLFNLNGLGLEY 389 (713)
Q Consensus 317 ------~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~L~~ 389 (713)
.......+..+++........+.+.++...-+..+......+..--.+.+...+..| ..|..+++|++|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 000001111122222222222223322211111111111111111111222222222 3478889999999999
Q ss_pred CcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCC
Q 041089 390 NQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLP 469 (713)
Q Consensus 390 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 469 (713)
|.++++-+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-.|++.-..-
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 99998888889999999999999999886666678888999999999999998888888888899999888887641110
Q ss_pred c-cc--------------cCcccccchhcccCCcCCC---CCCcccc---------CCCCCcE-EeCCCCcCCccCcccC
Q 041089 470 P-QI--------------FGITPLSKLLDLSENHFSG---SIPLEVG---------NLKSLVQ-LDISRNHFSNEIPVTL 521 (713)
Q Consensus 470 ~-~~--------------~~~~~l~~~l~ls~n~~~~---~~~~~~~---------~l~~L~~-L~Ls~n~l~~~~p~~~ 521 (713)
- ++ .+.+...+.++++...+.. ..|++.+ .++-+.+ ...|+..+. .+|..+
T Consensus 364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 0 00 0111112233333332211 1111111 1112221 122222222 334333
Q ss_pred cCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCc
Q 041089 522 SACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYN 583 (713)
Q Consensus 522 ~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n 583 (713)
. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.+++.|.+|-+++|
T Consensus 443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2 24467888888887 55655 56677 8888888888666677888888888888776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4e-20 Score=202.06 Aligned_cols=259 Identities=26% Similarity=0.365 Sum_probs=116.9
Q ss_pred CCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCc
Q 041089 255 LTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLV 334 (713)
Q Consensus 255 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~ 334 (713)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.++. ..++|+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL~ 265 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----------LPPGLL 265 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----------cccccc
Confidence 334455555444 3344332 245555555555543 221 13455555555555543210 013444
Q ss_pred EEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccc
Q 041089 335 KLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414 (713)
Q Consensus 335 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 414 (713)
.|++++|.+. .+|. ....|+.|++++|+++ .+|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|
T Consensus 266 ~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 266 ELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN 332 (788)
T ss_pred eeeccCCchh-hhhh----chhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccC
Confidence 4555444443 1221 1124555555555555 2332 12456666666666553 2221 134555555555
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCC
Q 041089 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494 (713)
Q Consensus 415 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~ 494 (713)
++++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|++. .+|..
T Consensus 333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----------------------- 380 (788)
T PRK15387 333 QLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----------------------- 380 (788)
T ss_pred cccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc-----------------------
Confidence 5542 3321 1345555555555552 3321 234444555555544 23322
Q ss_pred ccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCC
Q 041089 495 LEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPF 574 (713)
Q Consensus 495 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 574 (713)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++
T Consensus 381 -----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~ 446 (788)
T PRK15387 381 -----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSS 446 (788)
T ss_pred -----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccC
Confidence 1334555555555542 3322 1345555555555542 3332 123445555555555 34555555555
Q ss_pred CCEEeCCCccCcccC
Q 041089 575 LEYLNLSYNHFEGEV 589 (713)
Q Consensus 575 L~~L~ls~n~l~~~~ 589 (713)
|+.|++++|++++.+
T Consensus 447 L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 447 ETTVNLEGNPLSERT 461 (788)
T ss_pred CCeEECCCCCCCchH
Confidence 555555555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.2e-19 Score=198.33 Aligned_cols=133 Identities=21% Similarity=0.316 Sum_probs=80.2
Q ss_pred EEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccC
Q 041089 62 VTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHT 141 (713)
Q Consensus 62 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 141 (713)
-..|+|+.+.++. +|+.+. ++|+.|++++|+++ .+|.. .++|++|++++|+++ .+|.. ..+|++|++++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 4467888888874 566665 47888888888887 45542 467888888888877 45532 34666777777
Q ss_pred CccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCc
Q 041089 142 NNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 142 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 217 (713)
|.+.. +|.. ..+|+.|++++|+++ .+|.. .++|++|++++|++++ +|... .+|+.|++++|.+.
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 76653 2221 234666666666666 23332 3556666666666653 33311 23455555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.7e-19 Score=198.74 Aligned_cols=338 Identities=18% Similarity=0.243 Sum_probs=157.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCC---CCCCCCCCCCCCCccc----------------cccCCCCCcEEEEECCCCCc
Q 041089 12 CFADSNEMDRLALLAIKSQLQDPLG---VTKSWNNSINLCQWTG----------------VTCGHRHQRVTELDLESQNI 72 (713)
Q Consensus 12 ~~~~~~~~~~~~ll~~k~~~~~~~~---~~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l 72 (713)
..+....++-..+++..+.+.-|.. .-..|.+..++|.-.. |.|.. +.|+.+...+...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~ 133 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQ 133 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Ccccccccccccc
Confidence 3444556788889998888875532 2234998889997654 55643 5677776655322
Q ss_pred ceecCccccCCCCCCEEECC----CCCCCccC---chhhh-----ccCCCCeeeecCCCCcccCCccccCCCCCcEEEcc
Q 041089 73 GGFLSPYIGNLSFLRVINLA----NNRFHGQI---PKEVG-----RLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVH 140 (713)
Q Consensus 73 ~~~~~~~l~~l~~L~~L~Ls----~n~l~~~~---p~~~~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 140 (713)
.......-.. -.+.... .+.-.+.. ..++. -..+...|+++++.++ .+|..+. ..|+.|+++
T Consensus 134 ~~~~~~~~~~---~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 134 ASSASGSKDA---VNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD 207 (754)
T ss_pred cccCCCCCCh---hhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence 1110000000 0000000 00000000 00000 0122344444444444 3333332 244444444
Q ss_pred CCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCC
Q 041089 141 TNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMF 220 (713)
Q Consensus 141 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 220 (713)
+|+++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+
T Consensus 208 ~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 208 NNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CL 277 (754)
T ss_pred CCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cc
Confidence 444442 222222 24555555555544 2333222 24555555555554 3444332 24555555555554 23
Q ss_pred cccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCC
Q 041089 221 PLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSL 300 (713)
Q Consensus 221 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 300 (713)
|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+ .
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~ 345 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--P 345 (754)
T ss_pred ccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--c
Confidence 33332 24555555555555 3443221 345556666666553 33322 2456666666666654 33322 2
Q ss_pred CCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCcc----c
Q 041089 301 PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPE----I 376 (713)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~----~ 376 (713)
++|+.|++++|+++..+ ..+ .++|+.|++++|.++ .+|..+.. .|+.|++++|++. .+|.. .
T Consensus 346 ~sL~~L~Ls~N~L~~LP-------~~l--p~~L~~LdLs~N~Lt-~LP~~l~~---sL~~LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 346 PELQVLDVSKNQITVLP-------ETL--PPTITTLDVSRNALT-NLPENLPA---ALQIMQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred CcccEEECCCCCCCcCC-------hhh--cCCcCEEECCCCcCC-CCCHhHHH---HHHHHhhccCCcc-cCchhHHHHh
Confidence 46666666666654321 111 135566666666555 34444332 4666666666665 33332 2
Q ss_pred cCCCCCCEEeccCCccc
Q 041089 377 RNLFNLNGLGLEYNQLT 393 (713)
Q Consensus 377 ~~l~~L~~L~L~~n~l~ 393 (713)
..++.+..|++.+|.++
T Consensus 412 ~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hcCCCccEEEeeCCCcc
Confidence 33456667777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.3e-18 Score=191.82 Aligned_cols=233 Identities=23% Similarity=0.371 Sum_probs=153.4
Q ss_pred CccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccc
Q 041089 49 QWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNL 128 (713)
Q Consensus 49 ~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 128 (713)
.+.-..|.. .+.+.|+++++.++. +|..+. ++|+.|+|++|+++ .+|..+. .+|++|++++|+++ .+|..+
T Consensus 169 ~~r~~~Cl~--~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l 239 (754)
T PRK15370 169 VQRMRDCLK--NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL 239 (754)
T ss_pred HHHHHhhcc--cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh
Confidence 344456754 467889999988886 455453 57999999999998 6776654 58999999999988 567655
Q ss_pred cCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 041089 129 SRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNY 208 (713)
Q Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 208 (713)
. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.
T Consensus 240 ~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~ 308 (754)
T PRK15370 240 P--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITH 308 (754)
T ss_pred h--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHH
Confidence 4 46888888888887 4565554 47888888888887 4565553 47888888888887 4555443 46777
Q ss_pred EeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc
Q 041089 209 LGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH 288 (713)
Q Consensus 209 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 288 (713)
|++++|.+.. +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++ .+|..+ .++|+.|++++|.
T Consensus 309 L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 309 LNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred HHhcCCcccc-CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCc
Confidence 7777777764 343322 46677777777666 355443 256666666666665 344433 2456666666666
Q ss_pred cccccccccCCCCCCCeEEcCCCccc
Q 041089 289 FSGQVRINFNSLPNLSKLYLGRNNLG 314 (713)
Q Consensus 289 l~~~~~~~l~~l~~L~~L~l~~n~l~ 314 (713)
++.. |..+. ..|+.|++++|++.
T Consensus 379 Lt~L-P~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 379 LTNL-PENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CCCC-CHhHH--HHHHHHhhccCCcc
Confidence 6532 22221 24555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.5e-19 Score=183.30 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=66.8
Q ss_pred EECCCCCcc-eecCccccCCCCCCEEECCCCCCCc----cCchhhhccCCCCeeeecCCCCcc------cCCccccCCCC
Q 041089 65 LDLESQNIG-GFLSPYIGNLSFLRVINLANNRFHG----QIPKEVGRLFRLETIVLSNNSFSG------KIPTNLSRCFN 133 (713)
Q Consensus 65 L~L~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~ 133 (713)
|+|..+.++ ......+..++.|++|+++++.++. .++..+...+.|++|+++++.+.+ .++..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444445444 2233344455556666666665532 233344455556666665555441 12223344445
Q ss_pred CcEEEccCCccccccchhhcCcCC---CCEEeccCccccc----cCcccccCC-CCCcEEEccCCCCCCC----CCcccc
Q 041089 134 LIDFWVHTNNLVGEIQAIIGNWLK---LERLSLYDNQLTG----QLRPSIGNL-SALQTFDIAGNKLDGR----IPDSLG 201 (713)
Q Consensus 134 L~~L~l~~n~~~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~ 201 (713)
|+.|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 555555554444333333333322 5555555544442 111223333 4445555555444421 122233
Q ss_pred CCCCCCEEeCCCCcCc
Q 041089 202 QLRNLNYLGTSENDFS 217 (713)
Q Consensus 202 ~l~~L~~L~l~~n~~~ 217 (713)
.+++|++|++++|.+.
T Consensus 163 ~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 163 ANRDLKELNLANNGIG 178 (319)
T ss_pred hCCCcCEEECcCCCCc
Confidence 3344444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7.3e-19 Score=180.94 Aligned_cols=254 Identities=22% Similarity=0.248 Sum_probs=161.2
Q ss_pred EEECCCCCCC-ccCchhhhccCCCCeeeecCCCCccc----CCccccCCCCCcEEEccCCccc------cccchhhcCcC
Q 041089 88 VINLANNRFH-GQIPKEVGRLFRLETIVLSNNSFSGK----IPTNLSRCFNLIDFWVHTNNLV------GEIQAIIGNWL 156 (713)
Q Consensus 88 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~ 156 (713)
.|+|..+.++ ...+..+..+..|++|+++++.++.. ++..+...+++++++++++.+. ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5788888887 45666778888999999999998643 5556677888999999988776 23445677788
Q ss_pred CCCEEeccCccccccCcccccCCCC---CcEEEccCCCCCC----CCCccccCC-CCCCEEeCCCCcCcCC----Ccccc
Q 041089 157 KLERLSLYDNQLTGQLRPSIGNLSA---LQTFDIAGNKLDG----RIPDSLGQL-RNLNYLGTSENDFSGM----FPLSV 224 (713)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~~ 224 (713)
+|+.|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999887666666665555 9999999888763 233445566 7888888888887743 23345
Q ss_pred cCCCcceEEEccCCCCcccC----CccccCCCCCCCEEeCCCCcCccc----CCccCcCCCCCcEEeccCcccccccccc
Q 041089 225 CNISSLDEAYLFKNRFKGSL----PVCLGFNLPKLTVLVVAQNNLTGF----LPQSLSNASKLEWLELNENHFSGQVRIN 296 (713)
Q Consensus 225 ~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 296 (713)
..+++|++|++++|.+++.. +..+. .+++|+.|++++|.+++. +...+..+++|++|++++|.+++.....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56667777777777776422 22222 345777777777766532 2233455666777777766665422221
Q ss_pred cC-----CCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccc
Q 041089 297 FN-----SLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFG 344 (713)
Q Consensus 297 l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 344 (713)
+. ..+.|++|++++|.++... ...+...+..+++|+.+++++|.+.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDG--AKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHH--HHHHHHHHhcCCCccEEECCCCCCc
Confidence 11 1255666666666554210 0122233333444555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-19 Score=151.32 Aligned_cols=158 Identities=27% Similarity=0.394 Sum_probs=98.0
Q ss_pred cccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCC
Q 041089 79 YIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKL 158 (713)
Q Consensus 79 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 158 (713)
.+.++.+++.|.||+|+++ .+|..+..+.+|++|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3456677777888888887 66677888888888888888887 66777777777777776666554 455666666666
Q ss_pred CEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccC
Q 041089 159 ERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237 (713)
Q Consensus 159 ~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 237 (713)
++|||..|++.. .+|..|..++.|+.|.++.|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 666666666542 34555555555555566666555 55555555555555555555544 3344444444444444444
Q ss_pred CCCc
Q 041089 238 NRFK 241 (713)
Q Consensus 238 n~l~ 241 (713)
|.++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 4443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=7.9e-18 Score=142.88 Aligned_cols=155 Identities=37% Similarity=0.596 Sum_probs=87.0
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEE
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 457 (713)
.+.+++.|.+++|+++ .+|+.+..+.+|+.|++++|++. ..|.+++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455666667777766 45556666777777777777766 55666667777777777766665 566666666666666
Q ss_pred eCCCCCCC-CCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCc
Q 041089 458 SAPNNQLN-GTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNS 536 (713)
Q Consensus 458 ~l~~n~l~-~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~ 536 (713)
|+..|++. ..+|..+|.+..+. .|+++.|.+. .+|..++.+++|+.|.+..|.+. .+|.+++.++.|++|++.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlr-alyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLR-ALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHH-HHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 66666554 23444444443332 4444444443 44444444444444444444444 344444444444444444444
Q ss_pred cc
Q 041089 537 FN 538 (713)
Q Consensus 537 l~ 538 (713)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 43
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=167.01 Aligned_cols=150 Identities=32% Similarity=0.514 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC----CccccccCCC--C--CcEEEEECCCCCcceecCccccCCCCC
Q 041089 15 DSNEMDRLALLAIKSQLQDPLGVTKSWNNSINLC----QWTGVTCGHR--H--QRVTELDLESQNIGGFLSPYIGNLSFL 86 (713)
Q Consensus 15 ~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~l~~~~~~~l~~l~~L 86 (713)
...+.|..||+++|+.+.++.. .+|.+ +.|| .|.||.|... . .+|+.|+|+++.+.|.+|..+..+++|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 4456789999999999876542 48964 3332 7999999532 1 258889999998888888888888888
Q ss_pred CEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCc-CCCCEEeccC
Q 041089 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNW-LKLERLSLYD 165 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~Ls~ 165 (713)
+.|+|++|.+.|.+|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+++.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 888888888888888888888888888888888888888877777777777777777777777666542 2444555554
Q ss_pred cc
Q 041089 166 NQ 167 (713)
Q Consensus 166 n~ 167 (713)
|.
T Consensus 525 N~ 526 (623)
T PLN03150 525 NA 526 (623)
T ss_pred Cc
Confidence 43
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=2.6e-14 Score=157.58 Aligned_cols=118 Identities=36% Similarity=0.563 Sum_probs=99.1
Q ss_pred CCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCC
Q 041089 502 SLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLS 581 (713)
Q Consensus 502 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 581 (713)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|||++|++++.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788999999998899889899999999999999999999889999999999999999999999999999999999999
Q ss_pred CccCcccCCCC--CCCCCCCcccccCCCCCCCCCCCCCCCccc
Q 041089 582 YNHFEGEVPKK--GVFSNETRISLTGNEQLCGGLGELHLPACH 622 (713)
Q Consensus 582 ~n~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~~~~~~~c~ 622 (713)
+|+++|.+|.. .....+..+++.+|+.+|+.+. .+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~---l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG---LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC---CCCCc
Confidence 99999988865 2233456778899999998542 35675
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.8e-13 Score=138.04 Aligned_cols=193 Identities=30% Similarity=0.437 Sum_probs=149.2
Q ss_pred CCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeC
Q 041089 380 FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSA 459 (713)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l 459 (713)
.--...|++.|++. ++|..++.|..|+.+.+..|.+. .+|..+.++..|+++||+.|+++ ..|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 34456788888887 67888888888888888888887 77888888888999999999888 6777777765 788888
Q ss_pred CCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccc
Q 041089 460 PNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG 539 (713)
Q Consensus 460 ~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~ 539 (713)
++|+++ .+|..++....+ ..+|.+.|.+. .+|..++.+.+|+.|.+..|++. .+|.++. .-.|..||+|.|+++
T Consensus 151 sNNkl~-~lp~~ig~~~tl-~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTL-AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhH-HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 888887 888888844444 47888888887 67778888888888888888887 5666666 556788888888887
Q ss_pred cCCcccccCCCCCEEeCCCCcccccCCccC---CCCCCCCEEeCCCc
Q 041089 540 SIPQSLNALKSIKELDLSCNNLSGQIPIHL---QDLPFLEYLNLSYN 583 (713)
Q Consensus 540 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~n 583 (713)
.+|-.|..|+.|++|-|.+|.+. ..|..+ +...-.++|+..-+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 78888888888888888888887 334332 23344566666655
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=8.2e-14 Score=140.54 Aligned_cols=176 Identities=29% Similarity=0.502 Sum_probs=156.8
Q ss_pred cccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccch
Q 041089 402 ELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKL 481 (713)
Q Consensus 402 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 481 (713)
.+.--...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ .+|..++.++- +.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpL--kv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPL--KV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcc--ee
Confidence 3444567899999998 78888888999999999999888 78999999999999999999998 89998887653 47
Q ss_pred hcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcc
Q 041089 482 LDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNL 561 (713)
Q Consensus 482 l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 561 (713)
+-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|+++.|++. .+|+.+..| .|..||+|+|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 889999998 88999999999999999999998 68888999999999999999998 567677754 588999999999
Q ss_pred cccCCccCCCCCCCCEEeCCCccCcc
Q 041089 562 SGQIPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 562 ~~~~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
+ .+|.+|..|..|++|-|.+|+++.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC
Confidence 9 899999999999999999999974
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3e-11 Score=127.94 Aligned_cols=197 Identities=36% Similarity=0.548 Sum_probs=102.5
Q ss_pred EEEccCCceeecCCccccCCCCCCEEeccCCcccccCCccccccc-ccceeecccccccccCCccccCCCCCCEEEccCC
Q 041089 360 LIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELR-NLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438 (713)
Q Consensus 360 ~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 438 (713)
.++...+.+...+ ..+...+.++.|++.+|.++ .++....... +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555543222 22334456677777777766 3444444553 6777777777766 34445666677777777777
Q ss_pred cccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCc
Q 041089 439 KLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIP 518 (713)
Q Consensus 439 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 518 (713)
++. .+|......+.|+.|++++|++. .+|..+ ..+..|++|++++|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-------------------------~~~~~L~~l~~~~N~~~-~~~ 225 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-------------------------ELLSALEELDLSNNSII-ELL 225 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-------------------------hhhhhhhhhhhcCCcce-ecc
Confidence 666 44444445666666666666665 444433 23333444444444322 233
Q ss_pred ccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 519 VTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 519 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
..+..+..+..+.+.+|++.. .+..++.+++++.|++++|.++...+ +..+.+++.|++++|.+....|
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 334444444444444444432 13444445555555555555553222 4455555555555555544433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.5e-11 Score=126.52 Aligned_cols=201 Identities=31% Similarity=0.487 Sum_probs=140.3
Q ss_pred cEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCC-CCCEEeccCCcccccCCcccccccccceeecc
Q 041089 334 VKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLF-NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLV 412 (713)
Q Consensus 334 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 412 (713)
..++...+.+...... +... +.+..+++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~~~-~~~~-~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNISE-LLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCchh-hhcc-cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 3577777766322222 2222 37899999999998 5666667774 9999999999998 555678899999999999
Q ss_pred cccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCC
Q 041089 413 GNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGS 492 (713)
Q Consensus 413 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~ 492 (713)
+|++. .+|......+.|+.|++++|++. .+|........|+++.+++|.+. .
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~------------------------- 223 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E------------------------- 223 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-e-------------------------
Confidence 99998 55655558899999999999998 66766556667888888888532 2
Q ss_pred CCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccC
Q 041089 493 IPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHL 569 (713)
Q Consensus 493 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 569 (713)
.+..+..+..+..+.+.+|++. ..+..+..+++++.|++++|.++...+ +..+.+++.|++++|.++...|...
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 2333444555555556666655 224556666667777777777663322 6666777777777777765555443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=3.8e-12 Score=121.52 Aligned_cols=182 Identities=21% Similarity=0.290 Sum_probs=112.4
Q ss_pred CcEEEEECCCCCccee----cCccccCCCCCCEEECCCC---CCCccCchh-------hhccCCCCeeeecCCCCcccCC
Q 041089 60 QRVTELDLESQNIGGF----LSPYIGNLSFLRVINLANN---RFHGQIPKE-------VGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
..++.|+|++|.+... +...+.+.+.|+.-++|.- +....+|.. +..+++|++||||.|.|....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 5689999999988753 4566778889999998864 233345543 4456789999999998886655
Q ss_pred ccc----cCCCCCcEEEccCCccccccchh-------------hcCcCCCCEEeccCcccccc----CcccccCCCCCcE
Q 041089 126 TNL----SRCFNLIDFWVHTNNLVGEIQAI-------------IGNWLKLERLSLYDNQLTGQ----LRPSIGNLSALQT 184 (713)
Q Consensus 126 ~~l----~~l~~L~~L~l~~n~~~~~~~~~-------------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~ 184 (713)
..| ..+..|++|.|.+|.+...-... .+.-+.|+++...+|++... +...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 544 56788888888888764222111 23345677777777766532 2233455567777
Q ss_pred EEccCCCCCC----CCCccccCCCCCCEEeCCCCcCcCC----CcccccCCCcceEEEccCCCCc
Q 041089 185 FDIAGNKLDG----RIPDSLGQLRNLNYLGTSENDFSGM----FPLSVCNISSLDEAYLFKNRFK 241 (713)
Q Consensus 185 L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 241 (713)
+.++.|.+.. .+...+..+++|++|+|.+|.|+.. +...+..+++|++++++.|.+.
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 7777776542 1223455666666666666665532 2223334445555555554443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-11 Score=119.30 Aligned_cols=209 Identities=22% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCCCCEEeccCCcccccCC-cccccccccceeecccccccccCC--ccccCCCCCCEEEccCCcccccCChh-hhcCCCC
Q 041089 379 LFNLNGLGLEYNQLTGTIP-PAIGELRNLQYLGLVGNNIRGIIP--DSIGNLTLLNILQLGFNKLQGSIPSY-LGKCQNL 454 (713)
Q Consensus 379 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~~~~L 454 (713)
+.+|+.+.|.++.+....- +....|++++.|||+.|-+....+ .....+++|+.|+++.|.+.-...+. -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3344444444444331110 233344555555555544432211 12334455555555555443211111 1134455
Q ss_pred cEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccC-cccCcCCCCCceeeCc
Q 041089 455 MQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEI-PVTLSACTTLEYLLMQ 533 (713)
Q Consensus 455 ~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~ls 533 (713)
+.|.++.|.++..--..+....+.++.|++..|...+.-......+..|++|||++|++.... -...+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 555555555541111111111122235555555422222223344556777777777665321 1234566677777777
Q ss_pred CCccccc-CCcc-----cccCCCCCEEeCCCCccccc-CCccCCCCCCCCEEeCCCccCcc
Q 041089 534 GNSFNGS-IPQS-----LNALKSIKELDLSCNNLSGQ-IPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 534 ~n~l~~~-~~~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
.|.+... .|+. ...+++|++|++++|++... .-..+..+++|+.|.+..|++..
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7766543 2332 34567777777777777421 11234455666777777777654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.7e-11 Score=117.29 Aligned_cols=208 Identities=22% Similarity=0.214 Sum_probs=117.9
Q ss_pred hccCCCCeeeecCCCCcccCC--ccccCCCCCcEEEccCCccccc--cchhhcCcCCCCEEeccCccccccCccc-ccCC
Q 041089 105 GRLFRLETIVLSNNSFSGKIP--TNLSRCFNLIDFWVHTNNLVGE--IQAIIGNWLKLERLSLYDNQLTGQLRPS-IGNL 179 (713)
Q Consensus 105 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l 179 (713)
+++.+|+...|.++.+. ..+ .....|++++.|||+.|-+... +-.....+++|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45667777777777665 222 2455677777777777766542 2234466777888888887765322111 1245
Q ss_pred CCCcEEEccCCCCCCCC-CccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCC--ccccCCCCCCC
Q 041089 180 SALQTFDIAGNKLDGRI-PDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLP--VCLGFNLPKLT 256 (713)
Q Consensus 180 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~~l~~L~ 256 (713)
++|+.|.+++|.++... -..+..+++|+.|+|.+|.....-......+..|++|+|++|++. ..+ ...+ .++.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~-~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG-TLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc-cccchh
Confidence 67777777777776321 122345677777777777533233333444566777777777665 222 1222 566677
Q ss_pred EEeCCCCcCcccC-Ccc-----CcCCCCCcEEeccCcccccccc-cccCCCCCCCeEEcCCCcccC
Q 041089 257 VLVVAQNNLTGFL-PQS-----LSNASKLEWLELNENHFSGQVR-INFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 257 ~L~L~~n~l~~~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 315 (713)
.|+++.+.+...- |+. ...+++|++|++..|++...-. ..+..+++|+.|.+..|.+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777766665431 221 2345666666666666643211 123344555556655555543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=2.1e-11 Score=116.51 Aligned_cols=246 Identities=22% Similarity=0.251 Sum_probs=125.5
Q ss_pred ccccCCCCCCEEECCCCCCCc----cCchhhhccCCCCeeeecCCCCcc----cCCccccCCCCCcEEEccCCccccccc
Q 041089 78 PYIGNLSFLRVINLANNRFHG----QIPKEVGRLFRLETIVLSNNSFSG----KIPTNLSRCFNLIDFWVHTNNLVGEIQ 149 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~ 149 (713)
+.+.....+++++||+|.+.. .+...+.+.++|+..++|+- ++| .+|..+. ...
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~-----------------~l~ 85 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALK-----------------MLS 85 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHH-----------------HHH
Confidence 455667788889999988863 34445667778888888754 332 2333221 011
Q ss_pred hhhcCcCCCCEEeccCccccccCccc----ccCCCCCcEEEccCCCCCCC-------------CCccccCCCCCCEEeCC
Q 041089 150 AIIGNWLKLERLSLYDNQLTGQLRPS----IGNLSALQTFDIAGNKLDGR-------------IPDSLGQLRNLNYLGTS 212 (713)
Q Consensus 150 ~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~-------------~~~~l~~l~~L~~L~l~ 212 (713)
+++..+++|++||||+|.+...-++. +..+..|++|.|.+|.+.-. .....+.-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 22334455555555555554322222 33456666666666654310 01112334556666666
Q ss_pred CCcCcCC----CcccccCCCcceEEEccCCCCcccC---CccccCCCCCCCEEeCCCCcCccc----CCccCcCCCCCcE
Q 041089 213 ENDFSGM----FPLSVCNISSLDEAYLFKNRFKGSL---PVCLGFNLPKLTVLVVAQNNLTGF----LPQSLSNASKLEW 281 (713)
Q Consensus 213 ~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---p~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~ 281 (713)
.|++... +...+...+.|+.+.++.|.+...- -..-+..+++|++|+|.+|.++.. +...+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 6655432 1223444556666666666543111 111112566667777766666522 2234455566777
Q ss_pred EeccCccccccccccc-----CCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeecccc
Q 041089 282 LELNENHFSGQVRINF-----NSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRF 343 (713)
Q Consensus 282 L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 343 (713)
|++++|.+.......| ...|.|+.+.+.+|.++..... .....+...+.|..|++++|++
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--HHHHHHhcchhhHHhcCCcccc
Confidence 7777666654332222 2346666666666665431110 1111223345555666666555
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.9e-10 Score=102.25 Aligned_cols=127 Identities=24% Similarity=0.317 Sum_probs=34.2
Q ss_pred ccCCCCCCEEECCCCCCCccCchhhh-ccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCC
Q 041089 80 IGNLSFLRVINLANNRFHGQIPKEVG-RLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKL 158 (713)
Q Consensus 80 l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 158 (713)
+.+...+++|+|++|.++. + +.++ .+.+|+.||+++|.++. +. .+..+++|++|++++|.++...+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3444456666666666652 2 2333 35566666666666662 22 35555666666666666554322222345666
Q ss_pred CEEeccCcccccc-CcccccCCCCCcEEEccCCCCCCCCCc----cccCCCCCCEEeC
Q 041089 159 ERLSLYDNQLTGQ-LRPSIGNLSALQTFDIAGNKLDGRIPD----SLGQLRNLNYLGT 211 (713)
Q Consensus 159 ~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l 211 (713)
++|++++|++... .-..+..+++|++|++.+|.++.. +. .+..+++|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 6666666665431 113345566666666666665521 21 2344555555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6.2e-11 Score=110.50 Aligned_cols=131 Identities=27% Similarity=0.306 Sum_probs=88.9
Q ss_pred CCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceee
Q 041089 452 QNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLL 531 (713)
Q Consensus 452 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 531 (713)
+.|+++|+++|.++ .+...+.-.+.. +.|++|+|.+... ..+..+++|+.||||+|.++ .+..+-..+.+.+.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 45555566665554 333333222222 3666666666522 23677888999999999887 3444445677888899
Q ss_pred CcCCcccccCCcccccCCCCCEEeCCCCcccccC-CccCCCCCCCCEEeCCCccCcccC
Q 041089 532 MQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI-PIHLQDLPFLEYLNLSYNHFEGEV 589 (713)
Q Consensus 532 ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~ 589 (713)
|++|.+... ..+..+-+|..||+++|+|.... -..++++|-|+++.+.+|++.+..
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999988532 46777888999999999987532 246788899999999999998643
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=8.1e-10 Score=124.69 Aligned_cols=251 Identities=20% Similarity=0.242 Sum_probs=151.4
Q ss_pred CcEEEEECCCCC--cceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEE
Q 041089 60 QRVTELDLESQN--IGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDF 137 (713)
Q Consensus 60 ~~v~~L~L~~~~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 137 (713)
..++.|-+..+. +.......|..++.|++|||++|.--+.+|..++.+-+||||+++++.+. .+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 457777777775 33333345788999999999998777799999999999999999999999 899999999999999
Q ss_pred EccCCccccccchhhcCcCCCCEEeccCcccc--ccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCC----EEeC
Q 041089 138 WVHTNNLVGEIQAIIGNWLKLERLSLYDNQLT--GQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLN----YLGT 211 (713)
Q Consensus 138 ~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l 211 (713)
++..+.....+|.....+++||+|.+...... ...-..+.++.+|+.+....... .+-..+..+.+|+ .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 99988877777777788999999998776522 22333445555666555543332 1112223333332 2222
Q ss_pred CCCcCcCCCcccccCCCcceEEEccCCCCcccCCcccc----CC-CCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccC
Q 041089 212 SENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLG----FN-LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNE 286 (713)
Q Consensus 212 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 286 (713)
.++.. ...+..+..+.+|+.|.+..+........... .. ++++..+...++..- ..+.+..-.++|+.|++..
T Consensus 702 ~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred ccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence 22221 23344566677777777777765421111100 00 122222222222111 1122223456777777777
Q ss_pred cccccccccccCCCCCCCeEEcCCCcccC
Q 041089 287 NHFSGQVRINFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 315 (713)
+.....+......+..++.+.+..+.+.+
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred ccccccCCCHHHHhhhcccEEeccccccc
Confidence 66554444444445555555555554443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=3.2e-10 Score=105.84 Aligned_cols=206 Identities=22% Similarity=0.246 Sum_probs=100.0
Q ss_pred cCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC-ccccccchhhcC
Q 041089 76 LSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN-NLVGEIQAIIGN 154 (713)
Q Consensus 76 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~ 154 (713)
+|-.+..+++|..+.+|++.-. .+-+-...-+.|+++...+..++ ..|. +-....+.....+.- -..|..-..+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 4445556667777777766433 11111122355666666555443 1111 111111111111111 111222223334
Q ss_pred cCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEE
Q 041089 155 WLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAY 234 (713)
Q Consensus 155 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 234 (713)
+..|+++|||+|.++ .+..+..-.+.++.|++++|.+. .+ +.+..+++|+.|+|++|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls----------------- 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA----------------- 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-----------------
Confidence 455666666666555 34444555555566666665554 11 12444555555555555433
Q ss_pred ccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCccccccc-ccccCCCCCCCeEEcCCCcc
Q 041089 235 LFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQV-RINFNSLPNLSKLYLGRNNL 313 (713)
Q Consensus 235 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l 313 (713)
.+.-+- ..+-+++.|.|+.|.+... ..+..+-+|..||+++|++.... ...++++|.|+.+.+.+|.+
T Consensus 343 --------~~~Gwh-~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 343 --------ECVGWH-LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred --------hhhhhH-hhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 111111 1455667777777766532 44566667777777777775432 22356666666666666665
Q ss_pred cC
Q 041089 314 GT 315 (713)
Q Consensus 314 ~~ 315 (713)
..
T Consensus 412 ~~ 413 (490)
T KOG1259|consen 412 AG 413 (490)
T ss_pred cc
Confidence 54
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=6.6e-10 Score=99.97 Aligned_cols=125 Identities=28% Similarity=0.364 Sum_probs=55.2
Q ss_pred CcEEEEECCCCCcceecCcccc-CCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccc-cCCCCCcEE
Q 041089 60 QRVTELDLESQNIGGFLSPYIG-NLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNL-SRCFNLIDF 137 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L 137 (713)
.+.++|+|+++.|... ..++ .+.+|+.|||++|.++ .++ .+..+++|++|++++|.++ .+...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 4678999999999875 3565 6889999999999998 343 5888999999999999999 455445 479999999
Q ss_pred EccCCcccccc-chhhcCcCCCCEEeccCccccccCc---ccccCCCCCcEEEccC
Q 041089 138 WVHTNNLVGEI-QAIIGNWLKLERLSLYDNQLTGQLR---PSIGNLSALQTFDIAG 189 (713)
Q Consensus 138 ~l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~~ 189 (713)
++++|++...- -..+..+++|++|++.+|++....- ..+..+++|+.||-..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999997532 3567889999999999999985321 2466899999997654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=9e-10 Score=124.32 Aligned_cols=84 Identities=26% Similarity=0.342 Sum_probs=40.1
Q ss_pred hcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcce
Q 041089 152 IGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLD 231 (713)
Q Consensus 152 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 231 (713)
|..++.|++|||++|.--+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|++..+.....+|.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 444455555555544443445555555555555555555544 4455555555555555554443333333333444444
Q ss_pred EEEcc
Q 041089 232 EAYLF 236 (713)
Q Consensus 232 ~L~l~ 236 (713)
+|.+.
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 44443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.8e-09 Score=78.65 Aligned_cols=59 Identities=39% Similarity=0.557 Sum_probs=32.3
Q ss_pred CCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCcc
Q 041089 526 TLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNH 584 (713)
Q Consensus 526 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~ 584 (713)
+|++|++++|+++...+..|..+++|+.|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555555555555555555555555554
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=5.2e-09 Score=70.28 Aligned_cols=39 Identities=56% Similarity=1.023 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCccccccC
Q 041089 18 EMDRLALLAIKSQLQ-DPLGVTKSWNNS--INLCQWTGVTCG 56 (713)
Q Consensus 18 ~~~~~~ll~~k~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 56 (713)
+.|++||++||+++. +|.+.+.+|+.. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998 677899999987 799999999995
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.4e-09 Score=78.21 Aligned_cols=61 Identities=33% Similarity=0.469 Sum_probs=52.8
Q ss_pred CCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcc
Q 041089 501 KSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNL 561 (713)
Q Consensus 501 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 561 (713)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688899999999866667888899999999999999888888899999999999999875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.7e-09 Score=114.50 Aligned_cols=200 Identities=27% Similarity=0.316 Sum_probs=92.9
Q ss_pred ccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCc
Q 041089 376 IRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLM 455 (713)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 455 (713)
+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+.....+.+++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence 44556666666666666543 2344455566666666666532 2344466666666666666533220034556666
Q ss_pred EEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCC--CCcEEeCCCCcCCccCcccCcCCCCCceeeCc
Q 041089 456 QLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLK--SLVQLDISRNHFSNEIPVTLSACTTLEYLLMQ 533 (713)
Q Consensus 456 ~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls 533 (713)
.+.+.+|.+. .+. .+...... ..+++..|.++..-+ +..+. .|+.+++++|++. .++..+..+..+..|+++
T Consensus 190 ~l~l~~n~i~-~i~-~~~~~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 190 ELDLGGNSIR-EIE-GLDLLKKL-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLS 263 (414)
T ss_pred HHhccCCchh-ccc-chHHHHHH-HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchh
Confidence 6666666554 111 11111111 123445555442111 11111 2555666666555 222344445555555555
Q ss_pred CCcccccCCcccccCCCCCEEeCCCCccccc---CCcc-CCCCCCCCEEeCCCccCcc
Q 041089 534 GNSFNGSIPQSLNALKSIKELDLSCNNLSGQ---IPIH-LQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 534 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~n~l~~ 587 (713)
+|++... ..+.....+..+....|.+... .... ....+.++.+.+.+|+...
T Consensus 264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 264 SNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 5555422 1233334444444555544311 1111 2334445555555555443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.7e-09 Score=113.03 Aligned_cols=249 Identities=24% Similarity=0.287 Sum_probs=113.2
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
+..++.+++..|.+.. +-..+..+.+|++|++.+|++. .+...+..+.+|++|++++|.++...+ +..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 3444444444444431 2222444455555555555544 222224445555555555555543322 33444455566
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCCCCCCCCcc-ccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCc
Q 041089 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDS-LGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFK 241 (713)
Q Consensus 163 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 241 (713)
+++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+...- .+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 666655521 223345556666666665552222 1 345555666666665544221 1112222223344444443
Q ss_pred ccCCccccCCCC--CCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCC
Q 041089 242 GSLPVCLGFNLP--KLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTST 319 (713)
Q Consensus 242 ~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (713)
..-+.. .+. .|+.+++.+|.+.. .+..+..+..+..+++.+|++..... +...+.+..+....+.+.....
T Consensus 222 ~~~~l~---~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 294 (414)
T KOG0531|consen 222 KLEGLN---ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEA- 294 (414)
T ss_pred eccCcc---cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhh-
Confidence 111110 112 25666666666652 22445566667777777666653221 3334444455555554432100
Q ss_pred CccccccccCCCCCcEEeeeccccccccC
Q 041089 320 DLDFITLLTNCSKLVKLGLVFNRFGGALP 348 (713)
Q Consensus 320 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 348 (713)
..........+.++...+..+......+
T Consensus 295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 295 -ISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred -hhccccccccccccccccccCccccccc
Confidence 0011113445566666666666554433
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.8e-10 Score=102.96 Aligned_cols=140 Identities=22% Similarity=0.236 Sum_probs=81.0
Q ss_pred CccccccCCCCCcEEEEECCCCCcceecCccccCC--CCCCEEECCCCCCCcc-Cchhhhcc-CCCCeeeecCCCCccc-
Q 041089 49 QWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNL--SFLRVINLANNRFHGQ-IPKEVGRL-FRLETIVLSNNSFSGK- 123 (713)
Q Consensus 49 ~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~-~p~~~~~l-~~L~~L~Ls~n~l~~~- 123 (713)
+|.|..-++ .-.+.+|+.+-.+.. ..++.+ +...++.+...-.... +.+.+.-. ++|++||||+..++..
T Consensus 127 Rfyr~~~de--~lW~~lDl~~r~i~p---~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~st 201 (419)
T KOG2120|consen 127 RFYRLASDE--SLWQTLDLTGRNIHP---DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVST 201 (419)
T ss_pred HHhhccccc--cceeeeccCCCccCh---hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHH
Confidence 577666554 567889998877653 333333 2344455543333221 11222222 3588899988877632
Q ss_pred CCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCcc-ccc-cCcccccCCCCCcEEEccCCCCC
Q 041089 124 IPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQ-LTG-QLRPSIGNLSALQTFDIAGNKLD 193 (713)
Q Consensus 124 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~ 193 (713)
+-..++.|++|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++. ...--+.+|+.|.+|++++|.+.
T Consensus 202 l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 23335667777777777777777666666666777777777654 221 11112456677777777776654
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=4.2e-09 Score=110.00 Aligned_cols=179 Identities=28% Similarity=0.332 Sum_probs=92.0
Q ss_pred CcccccccccceeecccccccccCCccccCC-CCCCEEEccCCccc----------ccCChhhhcCCCCcEEeCCCCCCC
Q 041089 397 PPAIGELRNLQYLGLVGNNIRGIIPDSIGNL-TLLNILQLGFNKLQ----------GSIPSYLGKCQNLMQLSAPNNQLN 465 (713)
Q Consensus 397 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~----------~~~~~~l~~~~~L~~L~l~~n~l~ 465 (713)
|-.+..+.+|+.|.+.++.+... ..+..+ ..|++|-.++ .+. |.+...+. -..|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 45566777888888888776531 111111 2333333222 111 11111110 124455555666554
Q ss_pred CCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcc-cCcCCCCCceeeCcCCcccccCCcc
Q 041089 466 GTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV-TLSACTTLEYLLMQGNSFNGSIPQS 544 (713)
Q Consensus 466 ~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~ls~n~l~~~~~~~ 544 (713)
.+...+. +.+.++.|||++|+++.. +.+..|+.|++|||+.|.+. .+|. ....|. |+.|++++|.++.. ..
T Consensus 178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence 2222222 222234677777776532 25666677777777777666 3332 333444 67777777766532 34
Q ss_pred cccCCCCCEEeCCCCcccccCC-ccCCCCCCCCEEeCCCccCcc
Q 041089 545 LNALKSIKELDLSCNNLSGQIP-IHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 545 l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~n~l~~ 587 (713)
+.++.+|+.||+++|-|.+.-. .-++.+..|+.|+|.+|++.+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 5666777777777776654211 123445566666677776653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.2e-09 Score=110.79 Aligned_cols=127 Identities=23% Similarity=0.219 Sum_probs=88.0
Q ss_pred CCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCc-cccCCCCCcEEe
Q 041089 429 LLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQLD 507 (713)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~L~ 507 (713)
.|.+.+.+.|.+. .+...+.-++.|+.|+|+.|+++..- .+..++.+ ++|||++|.+. .+|. ....+. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~L-khLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKL-KHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccc-cccccccchhc-cccccchhhhh-heeee
Confidence 4566677777766 55566666777777777777776321 34444444 37788888776 3332 233444 99999
Q ss_pred CCCCcCCccCcccCcCCCCCceeeCcCCcccccCC-cccccCCCCCEEeCCCCcccc
Q 041089 508 ISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIP-QSLNALKSIKELDLSCNNLSG 563 (713)
Q Consensus 508 Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~ 563 (713)
+++|.++.. ..+.++.+|+.||+++|-+.+.-. .-+..+..|+.|.|.+|.+-.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999998743 356789999999999998876321 234567889999999999863
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=7.4e-09 Score=96.93 Aligned_cols=158 Identities=22% Similarity=0.219 Sum_probs=84.0
Q ss_pred CCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc-cccc-cccccCCCCCCCeEEcCCCcccCcCCCCcccccccc
Q 041089 251 NLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH-FSGQ-VRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLT 328 (713)
Q Consensus 251 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 328 (713)
.|.+|+.|.+.++++...+...+..-.+|+.|+++.+. ++.. ....+..+..|..|+++++.+...
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~------------ 275 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE------------ 275 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch------------
Confidence 45555555555555555554555555555555555432 2111 111134445555555555544331
Q ss_pred CCCCCcEEeeeccccccccChhhhhccccccEEEccCCcee---ecCCccccCCCCCCEEeccCCc-ccccCCccccccc
Q 041089 329 NCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQIS---GTIPPEIRNLFNLNGLGLEYNQ-LTGTIPPAIGELR 404 (713)
Q Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~ 404 (713)
.....+.....+++.|+++++.-. ..+..-...+++|.+|||++|. ++......+.+++
T Consensus 276 -----------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 276 -----------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred -----------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 111122233345555555554211 0111224568888888888875 4444445566788
Q ss_pred ccceeecccccccccCCc---cccCCCCCCEEEccCCc
Q 041089 405 NLQYLGLVGNNIRGIIPD---SIGNLTLLNILQLGFNK 439 (713)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~ 439 (713)
.|++|.++.|.. ++|. .+...|+|.+||+.++-
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 888888888864 4454 35567788888877653
No 48
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.34 E-value=3.4e-07 Score=94.05 Aligned_cols=39 Identities=56% Similarity=0.871 Sum_probs=36.9
Q ss_pred cCccccHHHHHHHHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 674 QFPIVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 674 ~~~~~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
..+.|+|.|+.+||+||+++++||+||||+||||.+++|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~ 99 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG 99 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC
Confidence 466799999999999999999999999999999999986
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.8e-07 Score=87.78 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCCCCCEEECCCCCCCc--cCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccc-cchhhcCcCCC
Q 041089 82 NLSFLRVINLANNRFHG--QIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGE-IQAIIGNWLKL 158 (713)
Q Consensus 82 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L 158 (713)
.+++++.+||.+|.++. .+..-+.++|+|+.|+|+.|++...+...-....+|++|-|.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 56788889999998874 4445567888999999999888754433223556777777777665532 22334566666
Q ss_pred CEEeccCcc
Q 041089 159 ERLSLYDNQ 167 (713)
Q Consensus 159 ~~L~Ls~n~ 167 (713)
+.|.+|.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=3.2e-07 Score=86.19 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=92.5
Q ss_pred CCCCCcEEEccCCcccc--ccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCC
Q 041089 130 RCFNLIDFWVHTNNLVG--EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNL 206 (713)
Q Consensus 130 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L 206 (713)
.++.++.+||.+|.++. .+...+.++|.|++|+++.|++...+...-....+|+.|.|.+..+.- ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555555555555543 334445667777777777777664333222345677777777766542 222345566667
Q ss_pred CEEeCCCCcCcCCCcc--cccC-CCcceEEEccCCCCcccC-CccccCCCCCCCEEeCCCCcCccc-CCccCcCCCCCcE
Q 041089 207 NYLGTSENDFSGMFPL--SVCN-ISSLDEAYLFKNRFKGSL-PVCLGFNLPKLTVLVVAQNNLTGF-LPQSLSNASKLEW 281 (713)
Q Consensus 207 ~~L~l~~n~~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~ 281 (713)
+.|.++.|.+....-+ .... -+.+.++.+..|....-. -..++..+|++..+.+..|.+... .......++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777776643321110 0111 112333333322111000 001112345666666666654422 1233445566666
Q ss_pred EeccCccccccc-ccccCCCCCCCeEEcCCCcccC
Q 041089 282 LELNENHFSGQV-RINFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 282 L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 315 (713)
|+|+.+++.... .+.+..+++|..|.++++.+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777766665432 2345666777777777666543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=9.9e-08 Score=78.97 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=41.3
Q ss_pred CCEEEccCCcccccCChhh---hcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEE
Q 041089 430 LNILQLGFNKLQGSIPSYL---GKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQL 506 (713)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L 506 (713)
+..++|++|++- -+++.. .....|...++++|.+. .+|..+....+..+.+++++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445666666654 233333 33345555667777665 555555444433334555555554 344444444444444
Q ss_pred eCCCCcCC
Q 041089 507 DISRNHFS 514 (713)
Q Consensus 507 ~Ls~n~l~ 514 (713)
+++.|.+.
T Consensus 106 Nl~~N~l~ 113 (177)
T KOG4579|consen 106 NLRFNPLN 113 (177)
T ss_pred ccccCccc
Confidence 44444444
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=5e-07 Score=83.75 Aligned_cols=182 Identities=24% Similarity=0.265 Sum_probs=102.2
Q ss_pred CcEEEEECCCCCccee----cCccccCCCCCCEEECCCCCC---CccCc-------hhhhccCCCCeeeecCCCCcccCC
Q 041089 60 QRVTELDLESQNIGGF----LSPYIGNLSFLRVINLANNRF---HGQIP-------KEVGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
..++++|||+|.+... +...+.+-++|+..+++.-.. ...+| .++-+|++|+..+||.|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4688899999988754 344566677888888876422 22333 234577888888888888876666
Q ss_pred ccc----cCCCCCcEEEccCCccccc----cchhh---------cCcCCCCEEeccCccccccCc----ccccCCCCCcE
Q 041089 126 TNL----SRCFNLIDFWVHTNNLVGE----IQAII---------GNWLKLERLSLYDNQLTGQLR----PSIGNLSALQT 184 (713)
Q Consensus 126 ~~l----~~l~~L~~L~l~~n~~~~~----~~~~l---------~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~ 184 (713)
..+ +.-+.|++|.+++|.+-.. +..++ .+-|.|++.....|++..-.. ..+..-..|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 553 4567777888777765321 22111 234567777777776642111 11222246666
Q ss_pred EEccCCCCCCCC-----CccccCCCCCCEEeCCCCcCcCCC----cccccCCCcceEEEccCCCCc
Q 041089 185 FDIAGNKLDGRI-----PDSLGQLRNLNYLGTSENDFSGMF----PLSVCNISSLDEAYLFKNRFK 241 (713)
Q Consensus 185 L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~ 241 (713)
+.+..|.+.-.- -..+..+.+|+.|++.+|.|+-.- ...+...+.|++|.+..|-++
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 777766654110 012334566666666666555321 122233344555555554443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=3.9e-07 Score=84.47 Aligned_cols=65 Identities=22% Similarity=0.083 Sum_probs=34.8
Q ss_pred cCCCCCCEEeccCCccccc----CCcccccccccceeecccccccccCCcc----c--cCCCCCCEEEccCCccc
Q 041089 377 RNLFNLNGLGLEYNQLTGT----IPPAIGELRNLQYLGLVGNNIRGIIPDS----I--GNLTLLNILQLGFNKLQ 441 (713)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~--~~l~~L~~L~Ls~n~l~ 441 (713)
..+.+|+.|||.+|-++-. +...+..++.|+.|.+.+|-++.....+ | ...++|..|-..+|.+.
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 4456667777777766522 2233445566677777766665332221 1 12455666666666544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=5.8e-07 Score=74.51 Aligned_cols=113 Identities=20% Similarity=0.309 Sum_probs=66.8
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEE
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 457 (713)
....|+.++|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3445666677777776433333334556777777777776 55666777777777777777776 455666666677777
Q ss_pred eCCCCCCCCCCCccccCcccccchhcccCCcCCCCCC
Q 041089 458 SAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494 (713)
Q Consensus 458 ~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~ 494 (713)
+..+|.+. .+|..++. +.+.-..++.++.+.+.-+
T Consensus 129 ds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCc
Confidence 77776665 55554322 2222244555555554444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=3e-05 Score=78.89 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCC
Q 041089 376 IRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438 (713)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 438 (713)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-...+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344566777777777665 3331 12357777776644333444433 246666666666
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=5.3e-05 Score=77.10 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=23.4
Q ss_pred cccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccc
Q 041089 357 TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 414 (713)
.+..|++++|.++ .+|. -..+|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4555555555444 2231 12245555555543222334333 235555555555
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.3e-05 Score=52.62 Aligned_cols=37 Identities=41% Similarity=0.584 Sum_probs=23.4
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCc
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFS 121 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 121 (713)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 45555677777777777777666
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=9.1e-06 Score=89.95 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=72.3
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCcc--Cch-------hh------hccCCCCeeeecCCCC-ccc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQ--IPK-------EV------GRLFRLETIVLSNNSF-SGK 123 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~-------~~------~~l~~L~~L~Ls~n~l-~~~ 123 (713)
-.++.+++.+..+....-..+.... |+.|.|.+-..... ... -+ ..-.+|++||+++... ...
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4678888877766654433444444 77777665322100 000 00 1124577777776542 222
Q ss_pred CCcccc-CCCCCcEEEccCCccccc-cchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccc
Q 041089 124 IPTNLS-RCFNLIDFWVHTNNLVGE-IQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSL 200 (713)
Q Consensus 124 ~p~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l 200 (713)
-|..++ .+++|+.|.+++-.+... .-....++++|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 223332 355566666555444322 222334555555555555555532 345555555555555444431 111234
Q ss_pred cCCCCCCEEeCCCC
Q 041089 201 GQLRNLNYLGTSEN 214 (713)
Q Consensus 201 ~~l~~L~~L~l~~n 214 (713)
.++++|+.||+|..
T Consensus 217 F~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 217 FNLKKLRVLDISRD 230 (699)
T ss_pred hcccCCCeeecccc
Confidence 44555555555543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.7e-05 Score=51.62 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=18.9
Q ss_pred CCCeeeecCCCCcccCCccccCCCCCcEEEccCCccc
Q 041089 109 RLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLV 145 (713)
Q Consensus 109 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 145 (713)
+|++|++++|+++ .+|+.+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 34444555555555555555444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00012 Score=65.60 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=63.5
Q ss_pred hhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccC-CcccccCCCCCEEeCCCC
Q 041089 481 LLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSI-PQSLNALKSIKELDLSCN 559 (713)
Q Consensus 481 ~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N 559 (713)
.+||++|.+.. -..|..++.|.+|.+.+|+|+..-|.--..++.|..|.|.+|++.... -+.+..++.|++|.+-+|
T Consensus 46 ~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 56777777642 224566777777888888777665655555667777777777765322 123556777777777777
Q ss_pred cccccCC---ccCCCCCCCCEEeCCC
Q 041089 560 NLSGQIP---IHLQDLPFLEYLNLSY 582 (713)
Q Consensus 560 ~l~~~~p---~~l~~l~~L~~L~ls~ 582 (713)
..+..-- ..+..+|+|+.||+..
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhh
Confidence 7663221 2345667777777654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00028 Score=63.23 Aligned_cols=86 Identities=27% Similarity=0.312 Sum_probs=63.7
Q ss_pred CCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCC
Q 041089 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCS 331 (713)
Q Consensus 252 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 331 (713)
......+++++|.+... ..|..++.|..|.+.+|+++.+.|..-..+++|+.|.+.+|++... ....-+..|+
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-----~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-----GDLDPLASCP 113 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-----hhcchhccCC
Confidence 44567788888877633 4577788888999999988877776666778899999999888653 3344566777
Q ss_pred CCcEEeeeccccc
Q 041089 332 KLVKLGLVFNRFG 344 (713)
Q Consensus 332 ~L~~L~l~~n~~~ 344 (713)
+|++|.+-+|..+
T Consensus 114 ~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 114 KLEYLTLLGNPVE 126 (233)
T ss_pred ccceeeecCCchh
Confidence 7777777777654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=3.4e-05 Score=85.54 Aligned_cols=147 Identities=22% Similarity=0.290 Sum_probs=64.9
Q ss_pred CCCcEEEccCCCCC-CCCCcccc-CCCCCCEEeCCCCcCcCC-CcccccCCCcceEEEccCCCCcccCCccccCCCCCCC
Q 041089 180 SALQTFDIAGNKLD-GRIPDSLG-QLRNLNYLGTSENDFSGM-FPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLT 256 (713)
Q Consensus 180 ~~L~~L~L~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 256 (713)
.+|++|++++...- ...|..++ .+|+|+.|.+.+-.+... +..... ++|+|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~-------------------------sFpNL~ 176 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA-------------------------SFPNLR 176 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhh-------------------------ccCccc
Confidence 56778888775432 12222333 356777777766544322 112223 444445
Q ss_pred EEeCCCCcCcccCCccCcCCCCCcEEeccCccccc-ccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcE
Q 041089 257 VLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSG-QVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVK 335 (713)
Q Consensus 257 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 335 (713)
.||+++++++.. ..++++++|+.|.+.+-.+.. ..-..+..+++|+.||+|...............+.-..+|.|+.
T Consensus 177 sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 177 SLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF 254 (699)
T ss_pred eeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence 555554444422 344445555555444433322 11122344555555555544332211000011112223455666
Q ss_pred EeeeccccccccChhhhh
Q 041089 336 LGLVFNRFGGALPHSIAN 353 (713)
Q Consensus 336 L~l~~n~~~~~~~~~~~~ 353 (713)
||.++..+.+.+-+.+..
T Consensus 255 LDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 255 LDCSGTDINEEILEELLN 272 (699)
T ss_pred EecCCcchhHHHHHHHHH
Confidence 666655555444444333
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.35 E-value=1.1e-05 Score=79.85 Aligned_cols=280 Identities=16% Similarity=0.107 Sum_probs=117.6
Q ss_pred CCCEEECCCCCCCc--cCchhhhccCCCCeeeecCCC-CcccCCccc-cCCCCCcEEEccCC-ccccccch-hhcCcCCC
Q 041089 85 FLRVINLANNRFHG--QIPKEVGRLFRLETIVLSNNS-FSGKIPTNL-SRCFNLIDFWVHTN-NLVGEIQA-IIGNWLKL 158 (713)
Q Consensus 85 ~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~L 158 (713)
.|+.|.+.+++-.+ .+-..-.+++++++|++.++. ++...-.++ ..|++|++|++..| .++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666554332 122233456666666666654 222222222 25666666666663 23332222 22456666
Q ss_pred CEEeccCcc-ccc-cCcccccCCCCCcEEEccCCCCCCCCCccc----cCCCCCCEEeCCCCcC-cCCC-cccccCCCcc
Q 041089 159 ERLSLYDNQ-LTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSL----GQLRNLNYLGTSENDF-SGMF-PLSVCNISSL 230 (713)
Q Consensus 159 ~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~-~~~~-~~~~~~l~~L 230 (713)
++|+++.+. +++ -+..-...+..++.+.+.+|.=. --+.+ +.+..+..+++..|.. +..- ...-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 666666654 222 11122334455555544443211 00111 1222233344333321 1110 0111234555
Q ss_pred eEEEccCCCCc-ccCCccccCCCCCCCEEeCCCCc-CcccCCccC-cCCCCCcEEeccCcccccc--cccccCCCCCCCe
Q 041089 231 DEAYLFKNRFK-GSLPVCLGFNLPKLTVLVVAQNN-LTGFLPQSL-SNASKLEWLELNENHFSGQ--VRINFNSLPNLSK 305 (713)
Q Consensus 231 ~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~ 305 (713)
+.++.+++... ...-..++.+.++|+++.+..++ ++..--..+ .+++.|+.+++..+..... +...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 55555554322 22223344456666666666654 221111111 2445666666665533211 1111234566666
Q ss_pred EEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCc
Q 041089 306 LYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQ 367 (713)
Q Consensus 306 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 367 (713)
+.++++...... +-..+...-..+..+..+.++++.....-....-...+.|+.+++.+++
T Consensus 377 lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhh-hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 666655433211 0001111122344566666666654322111122223356666665554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00068 Score=58.83 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=40.9
Q ss_pred ccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCC
Q 041089 78 PYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLK 157 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 157 (713)
.+|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++.+++.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555566555553 343333444555555666555553 4433333445554555555543 222222334444555
Q ss_pred CCEEeccCccccccCcccccCCCCCcEEEccC
Q 041089 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAG 189 (713)
Q Consensus 158 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 189 (713)
|+.+++..+ +.......|.++ +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555443 332333344444 555555443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=7.7e-06 Score=80.90 Aligned_cols=138 Identities=21% Similarity=0.152 Sum_probs=81.2
Q ss_pred ccCCCCCcEEeeecccccc-ccChhhhhccccccEEEccCCce-eecCCcc-ccCCCCCCEEeccCCccc--ccCCcccc
Q 041089 327 LTNCSKLVKLGLVFNRFGG-ALPHSIANLSTTMTLIAMAGNQI-SGTIPPE-IRNLFNLNGLGLEYNQLT--GTIPPAIG 401 (713)
Q Consensus 327 l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l-~~~~~~~-~~~l~~L~~L~L~~n~l~--~~~~~~l~ 401 (713)
-..+..|+.++.+++...+ ..-..++.-..+|+.+-+..++. +..--.. -.+++.|+.+++..+... +.+...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 3455666666666654322 22233444445677777776652 2111111 135677888888887643 22333334
Q ss_pred cccccceeecccccccccC-----CccccCCCCCCEEEccCCccc-ccCChhhhcCCCCcEEeCCCCCC
Q 041089 402 ELRNLQYLGLVGNNIRGII-----PDSIGNLTLLNILQLGFNKLQ-GSIPSYLGKCQNLMQLSAPNNQL 464 (713)
Q Consensus 402 ~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~l~~n~l 464 (713)
+++.|+.+.++++...... ...-..+..|+.+.++++... ......+..|++|+.+++-+++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6888899888887643111 112244667888899888654 34445667788888888877753
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.22 E-value=0.00092 Score=58.01 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=44.0
Q ss_pred hhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCC
Q 041089 102 KEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSA 181 (713)
Q Consensus 102 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 181 (713)
..|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|.++++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466666777777664 354444455666666666666553 4433344455555566666644 332233334455555
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCCEEeCC
Q 041089 182 LQTFDIAGNKLDGRIPDSLGQLRNLNYLGTS 212 (713)
Q Consensus 182 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 212 (713)
|+.+++..+ +.......|.++ +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555443 322223334444 55554444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00092 Score=62.74 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=25.0
Q ss_pred cccCCCCCCEEECCCC--CCCccCchhhhccCCCCeeeecCCCCc
Q 041089 79 YIGNLSFLRVINLANN--RFHGQIPKEVGRLFRLETIVLSNNSFS 121 (713)
Q Consensus 79 ~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 121 (713)
.+-.+++|+.|++|.| ++.+.++.....+++|++|++++|++.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4455566666666666 444444444455566666666666655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0032 Score=59.18 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=49.9
Q ss_pred hhcccCCcCCCCCCccccCCCCCcEEeCCCC--cCCccCcccCcCCCCCceeeCcCCccccc-CCcccccCCCCCEEeCC
Q 041089 481 LLDLSENHFSGSIPLEVGNLKSLVQLDISRN--HFSNEIPVTLSACTTLEYLLMQGNSFNGS-IPQSLNALKSIKELDLS 557 (713)
Q Consensus 481 ~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~Ls 557 (713)
.+.+.+..++.. ..+..+++|++|.+|.| ++.+..+.....+++|++|++++|++... .-..+..+.+|..||+.
T Consensus 47 ~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 47 LLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 444444444321 23445666777777777 55544444445557777777777766521 01123445556666666
Q ss_pred CCcccccCC---ccCCCCCCCCEEe
Q 041089 558 CNNLSGQIP---IHLQDLPFLEYLN 579 (713)
Q Consensus 558 ~N~l~~~~p---~~l~~l~~L~~L~ 579 (713)
+|.-+..-- ..|.-+++|++||
T Consensus 125 n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 125 NCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cCCccccccHHHHHHHHhhhhcccc
Confidence 666554111 1233455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00053 Score=64.46 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=34.4
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFS 121 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 121 (713)
..|.+|+.-++++..+ ....+++.|++|.||-|+++.. ..|..+++|+.|+|..|.+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 3455566666655543 2345666677777777766522 23566666777776666655
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.00083 Score=73.46 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=24.1
Q ss_pred cCCCCEEeccCcc-ccccCcccccC-CCCCcEEEccCCC-CCCC-CCccccCCCCCCEEeCCCCc
Q 041089 155 WLKLERLSLYDNQ-LTGQLRPSIGN-LSALQTFDIAGNK-LDGR-IPDSLGQLRNLNYLGTSEND 215 (713)
Q Consensus 155 l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~ 215 (713)
+++|+.|+++.+. +++..-..+.. |++|++|.+.++. ++.. +-.....+++|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3444555554444 33222222221 4455555544443 2211 11112234445555555443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.00073 Score=63.56 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=46.7
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcccccc-chhhcCcCCCCEE
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEI-QAIIGNWLKLERL 161 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 161 (713)
+.+.+.|++.++.++++ ....+++.|++|.||-|+++..-| +..|++|++|.|..|.+.... -..+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55667788888877632 234567788888888887773322 555666666666555554321 1223444444444
Q ss_pred eccCcc
Q 041089 162 SLYDNQ 167 (713)
Q Consensus 162 ~Ls~n~ 167 (713)
.|..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 444444
No 72
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=95.43 E-value=0.0099 Score=60.53 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=17.7
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
....+||+|+||+||||.|.+
T Consensus 213 ~l~eli~~Grfg~V~KaqL~~ 233 (534)
T KOG3653|consen 213 QLLELIGRGRFGCVWKAQLDN 233 (534)
T ss_pred hhHHHhhcCccceeehhhccC
Confidence 335789999999999999865
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.27 E-value=0.0056 Score=33.98 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.3
Q ss_pred CCeeeecCCCCc
Q 041089 110 LETIVLSNNSFS 121 (713)
Q Consensus 110 L~~L~Ls~n~l~ 121 (713)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.0076 Score=33.42 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=5.4
Q ss_pred CCEEeCCCCccc
Q 041089 551 IKELDLSCNNLS 562 (713)
Q Consensus 551 L~~L~Ls~N~l~ 562 (713)
|+.|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.80 E-value=0.0033 Score=68.74 Aligned_cols=189 Identities=19% Similarity=0.103 Sum_probs=109.6
Q ss_pred cCCCCCCEEECCCCCCCcc--CchhhhccCCCCeeeecCC-CCcccC----CccccCCCCCcEEEccCCc-cccccchhh
Q 041089 81 GNLSFLRVINLANNRFHGQ--IPKEVGRLFRLETIVLSNN-SFSGKI----PTNLSRCFNLIDFWVHTNN-LVGEIQAII 152 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~l~~n~-~~~~~~~~l 152 (713)
..++.|+.|.+..+.-... +-.....+++|+.|+++++ ...... ......+++|+.|+++++. ++...-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888887643222 3345677889999999873 221111 2234567889999999888 554444444
Q ss_pred c-CcCCCCEEeccCcc-ccccCc-ccccCCCCCcEEEccCCCCCC--CCCccccCCCCCCEEeCCCCcCcCCCcccccCC
Q 041089 153 G-NWLKLERLSLYDNQ-LTGQLR-PSIGNLSALQTFDIAGNKLDG--RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNI 227 (713)
Q Consensus 153 ~-~l~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 227 (713)
. .+++|++|.+.++. +++.-- .....++.|++|+++++.... .+.....++++|+.|.+.... .+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GC 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CC
Confidence 3 38899999988777 554322 233468889999999886531 122234456666665443321 13
Q ss_pred CcceEEEccCCCCcc--cCCccccCCCCCCCEEeCCCCcCcccC-CccCcCCCCC
Q 041089 228 SSLDEAYLFKNRFKG--SLPVCLGFNLPKLTVLVVAQNNLTGFL-PQSLSNASKL 279 (713)
Q Consensus 228 ~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L 279 (713)
..++.+.+....-.. .........+++++.+.+..+...... ...+..|+.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 334444333322211 233333347788888888777633222 2344555555
No 76
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=94.18 E-value=0.059 Score=58.96 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=19.0
Q ss_pred cCcCCeeccCCCceEEEEEe-CCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNL-GEG 712 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l-~~g 712 (713)
+.+..+||+|+||+||||.+ |.|
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Peg 721 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEG 721 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCC
Confidence 45678999999999999986 544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.88 E-value=0.00026 Score=75.09 Aligned_cols=83 Identities=29% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCEEeccCCcccccCC----cccccccccceeecccccccccCCc----cccCC-CCCCEEEccCCcccc----cCChhh
Q 041089 382 LNGLGLEYNQLTGTIP----PAIGELRNLQYLGLVGNNIRGIIPD----SIGNL-TLLNILQLGFNKLQG----SIPSYL 448 (713)
Q Consensus 382 L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l-~~L~~L~Ls~n~l~~----~~~~~l 448 (713)
+..+.|.+|.+..... ..+...+.|+.|++++|.+.+..-. .+... ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555555555543222 2334455666666666665522111 12221 345556666665543 233344
Q ss_pred hcCCCCcEEeCCCCCC
Q 041089 449 GKCQNLMQLSAPNNQL 464 (713)
Q Consensus 449 ~~~~~L~~L~l~~n~l 464 (713)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4456666666666655
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.24 E-value=0.0049 Score=56.62 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=22.5
Q ss_pred cccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCc
Q 041089 79 YIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFS 121 (713)
Q Consensus 79 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 121 (713)
++..+...+.||++.|++. .+-..|+-++.|..||++.|++.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~ 78 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK 78 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh
Confidence 3444555555666655544 23344555556666666665554
No 79
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=91.93 E-value=0.086 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.746 Sum_probs=21.5
Q ss_pred HHhccCcCCeeccCCCceEEEEEe
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l 709 (713)
.+++|...++||+||||+||||..
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 366899999999999999999975
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.73 E-value=0.0054 Score=56.34 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=54.4
Q ss_pred cccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCC
Q 041089 496 EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFL 575 (713)
Q Consensus 496 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 575 (713)
.+......+.||++.|++. ..-..|+-++.|+.|+++.|.+. ..|..+.....+..+++-+|..+ ..|.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3444555666677766654 23344555666666777766665 55666666666666666666665 556666677777
Q ss_pred CEEeCCCccC
Q 041089 576 EYLNLSYNHF 585 (713)
Q Consensus 576 ~~L~ls~n~l 585 (713)
+++++-.|++
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 7777666664
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.32 E-value=0.0016 Score=69.21 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=56.5
Q ss_pred hhcCcCCCCEEeccCccccc----cCccc----ccCCCCCcEEEccCCCCCCCC----CccccCCCC-CCEEeCCCCcCc
Q 041089 151 IIGNWLKLERLSLYDNQLTG----QLRPS----IGNLSALQTFDIAGNKLDGRI----PDSLGQLRN-LNYLGTSENDFS 217 (713)
Q Consensus 151 ~l~~l~~L~~L~Ls~n~l~~----~~~~~----l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~l~~n~~~ 217 (713)
.+.....++.++++.|.+.. .++.. +....++++|++++|.++... ...+...+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 34444555555555555421 11112 223455666666666554211 112333333 444666666554
Q ss_pred CC----CcccccCC-CcceEEEccCCCCcccCCc----cccCCCCCCCEEeCCCCcCcc
Q 041089 218 GM----FPLSVCNI-SSLDEAYLFKNRFKGSLPV----CLGFNLPKLTVLVVAQNNLTG 267 (713)
Q Consensus 218 ~~----~~~~~~~l-~~L~~L~l~~n~l~~~~p~----~~~~~l~~L~~L~L~~n~l~~ 267 (713)
.. ....+..+ ..+++++++.|.++..-.. .+. .++.++.+.++.|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~-~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLV-SCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHh-hhHHHHHhhcccCcccc
Confidence 32 11222333 4556666666666543322 222 56678888888887664
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.81 E-value=0.13 Score=26.31 Aligned_cols=13 Identities=46% Similarity=0.761 Sum_probs=4.7
Q ss_pred CCCEEECCCCCCC
Q 041089 85 FLRVINLANNRFH 97 (713)
Q Consensus 85 ~L~~L~Ls~n~l~ 97 (713)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555544443
No 83
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=88.70 E-value=0.17 Score=53.61 Aligned_cols=27 Identities=41% Similarity=0.696 Sum_probs=20.7
Q ss_pred ccHHHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 678 VSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 678 ~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.++|+.. ...||+|.||+||||.+-+
T Consensus 389 Ip~~ev~l-------~~rIGsGsFGtV~Rg~whG 415 (678)
T KOG0193|consen 389 IPPEEVLL-------GERIGSGSFGTVYRGRWHG 415 (678)
T ss_pred cCHHHhhc-------cceeccccccceeeccccc
Confidence 45566543 5789999999999998744
No 84
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=87.90 E-value=0.28 Score=54.33 Aligned_cols=27 Identities=33% Similarity=0.728 Sum_probs=23.4
Q ss_pred HHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
++++|...+.||+|+||+||+|+..+.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~ 156 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNK 156 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCC
Confidence 567788899999999999999998653
No 85
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=86.33 E-value=0.35 Score=52.94 Aligned_cols=34 Identities=35% Similarity=0.617 Sum_probs=28.0
Q ss_pred cccHHHHHHHHhccCc---------CCeeccCCCceEEEEEeC
Q 041089 677 IVSYAELSKATKEFSS---------SNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 677 ~~~~~~l~~at~~f~~---------~~~iG~GgfG~VYk~~l~ 710 (713)
-++|+|--+|...|.. +.+||.|-||-||+|.|.
T Consensus 609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk 651 (996)
T KOG0196|consen 609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLK 651 (996)
T ss_pred CccccCccHHHHHhhhhcChhheEEEEEEecccccceeccccc
Confidence 4688887777777654 579999999999999984
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.14 E-value=0.15 Score=28.88 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=4.5
Q ss_pred CCceeeCcCCccc
Q 041089 526 TLEYLLMQGNSFN 538 (713)
Q Consensus 526 ~L~~L~ls~n~l~ 538 (713)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.91 E-value=0.62 Score=26.88 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=7.7
Q ss_pred CCCCEEeCCCCccc
Q 041089 549 KSIKELDLSCNNLS 562 (713)
Q Consensus 549 ~~L~~L~Ls~N~l~ 562 (713)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.91 E-value=0.62 Score=26.88 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=7.7
Q ss_pred CCCCEEeCCCCccc
Q 041089 549 KSIKELDLSCNNLS 562 (713)
Q Consensus 549 ~~L~~L~Ls~N~l~ 562 (713)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.93 E-value=0.91 Score=26.16 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=9.1
Q ss_pred CCCCEEECCCCCCC
Q 041089 84 SFLRVINLANNRFH 97 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~ 97 (713)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.93 E-value=0.91 Score=26.16 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=9.1
Q ss_pred CCCCEEECCCCCCC
Q 041089 84 SFLRVINLANNRFH 97 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~ 97 (713)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 91
>PTZ00284 protein kinase; Provisional
Probab=80.77 E-value=0.57 Score=50.87 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 681 AELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 681 ~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+++..+++.|.....||+|+||+||+|+...
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~ 152 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRK 152 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcC
Confidence 4444556778888999999999999998643
No 92
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=0.29 Score=44.51 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=47.8
Q ss_pred CCCEEeccCCcccccCCcccccccccceeecccccccccC-Ccccc-CCCCCCEEEccCC-cccccCChhhhcCCCCcEE
Q 041089 381 NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGII-PDSIG-NLTLLNILQLGFN-KLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 381 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~l~~~~~L~~L 457 (713)
.++.+|=++..+..+--+.+..++.++.|.+.+|.--+.. -+.+. -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566666666666555556666666666666665422110 00111 3467788888876 4665555566677777777
Q ss_pred eCCC
Q 041089 458 SAPN 461 (713)
Q Consensus 458 ~l~~ 461 (713)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.36 E-value=0.25 Score=44.92 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=14.7
Q ss_pred CCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 110 LETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 110 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
++.+|-++..+....-..+.++++++.|.+..|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444444444443334444444444444443
No 94
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=76.16 E-value=1 Score=49.64 Aligned_cols=20 Identities=45% Similarity=0.966 Sum_probs=16.9
Q ss_pred cCcCCeeccCCCceEEEEEe
Q 041089 690 FSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l 709 (713)
....+.+|+|+||+||-|.-
T Consensus 996 it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred HhhhhhhccCccceEEEecC
Confidence 34578999999999998864
No 95
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=75.37 E-value=2.7 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.4
Q ss_pred cHHHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 679 SYAELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 679 ~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++......+..+...+.||+|+||+||||...+
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~ 356 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLG 356 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecC
Confidence 343334445556778999999999999988754
No 96
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=75.36 E-value=5.1 Score=25.87 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=4.4
Q ss_pred EEEehhhHHH
Q 041089 635 KVVIPVIGLV 644 (713)
Q Consensus 635 ~i~~~~~~~~ 644 (713)
++++++++++
T Consensus 16 ~VvVPV~vI~ 25 (40)
T PF08693_consen 16 GVVVPVGVII 25 (40)
T ss_pred EEEechHHHH
Confidence 4444444433
No 97
>PTZ00036 glycogen synthase kinase; Provisional
Probab=75.15 E-value=1.6 Score=46.97 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=20.5
Q ss_pred HhccCcCCeeccCCCceEEEEEeCC
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++.|....+||+|+||+||+|...+
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~ 89 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICID 89 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECC
Confidence 3457778899999999999998754
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.06 E-value=9.4 Score=39.76 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=41.9
Q ss_pred CCcEEeCCCCcCCccCccc--CcCCCCCceeeCcCCcccc-cCCcccc--------cCCCCCEEeCCCCcccccCCc---
Q 041089 502 SLVQLDISRNHFSNEIPVT--LSACTTLEYLLMQGNSFNG-SIPQSLN--------ALKSIKELDLSCNNLSGQIPI--- 567 (713)
Q Consensus 502 ~L~~L~Ls~n~l~~~~p~~--~~~~~~L~~L~ls~n~l~~-~~~~~l~--------~l~~L~~L~Ls~N~l~~~~p~--- 567 (713)
.+++|+++.|.+.+..... +..-++.+.+++.+-.-.. .++.... ..--+..+.++.|.+......
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3677777777776554332 2333455555554432210 0111111 012355677777776633222
Q ss_pred cCCCCCCCCEEeCCCccC
Q 041089 568 HLQDLPFLEYLNLSYNHF 585 (713)
Q Consensus 568 ~l~~l~~L~~L~ls~n~l 585 (713)
.+..-+.+..|++++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 233445677788887764
No 99
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=74.05 E-value=1.2 Score=43.93 Aligned_cols=22 Identities=41% Similarity=0.818 Sum_probs=18.1
Q ss_pred hccCcCCeeccCCCceEEEEEe
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l 709 (713)
++|..-|.|++|.||.||||.=
T Consensus 76 ~efe~lnrI~EGtyGiVYRakd 97 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKD 97 (419)
T ss_pred HHHHHHhhcccCcceeEEEecc
Confidence 3466678999999999999963
No 100
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=72.96 E-value=1.7 Score=45.40 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 680 YAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 680 ~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.++..+.++|.....||+|+||.||++.-..+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~ 67 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST 67 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCC
Confidence 445555667888899999999999999987543
No 101
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=72.36 E-value=2 Score=45.11 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=16.7
Q ss_pred cCcCCeeccCCCceEEEEEe
Q 041089 690 FSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l 709 (713)
|.-...||+|+||+||+|+.
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~ 56 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATA 56 (375)
T ss_pred eehhheecCCccceEEEEEE
Confidence 44468899999999999963
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=71.56 E-value=3.5 Score=35.65 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=14.3
Q ss_pred eeEEEEehhhHHHHHHHHHHHhhhhhhhcc
Q 041089 632 TLLKVVIPVIGLVLILLMCFIVVYTRRTKL 661 (713)
Q Consensus 632 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 661 (713)
.++.+++++.+++++.++++++++++|+|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 455556665555444444444444444443
No 103
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=71.47 E-value=2 Score=44.94 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.9
Q ss_pred HHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
..++|.....||+|+||.||+|.-..+
T Consensus 41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~ 67 (370)
T cd05621 41 KAEDYDVVKVIGRGAFGEVQLVRHKSS 67 (370)
T ss_pred CHHHCeEEEEEEecCCeEEEEEEECCC
Confidence 445677788999999999999987543
No 104
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.86 E-value=3.8 Score=23.75 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCccc
Q 041089 549 KSIKELDLSCNNLS 562 (713)
Q Consensus 549 ~~L~~L~Ls~N~l~ 562 (713)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 105
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=70.15 E-value=2.6 Score=44.75 Aligned_cols=19 Identities=42% Similarity=0.896 Sum_probs=16.6
Q ss_pred CCeeccCCCceEEEEEeCC
Q 041089 693 SNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~~ 711 (713)
...+|+|+||.||+|++..
T Consensus 162 ~kkLGeGaFGeV~~G~l~~ 180 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKL 180 (474)
T ss_pred cceeecccccEEEEEEEEe
Confidence 3789999999999999843
No 106
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.98 E-value=3 Score=42.87 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.6
Q ss_pred cCcCCeeccCCCceEEEEEeCCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
..-...||+|.||-|.||.+.++
T Consensus 213 I~L~e~IGkGRyGEVwrG~wrGe 235 (513)
T KOG2052|consen 213 IVLQEIIGKGRFGEVWRGRWRGE 235 (513)
T ss_pred eEEEEEecCccccceeeccccCC
Confidence 34467899999999999988653
No 107
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=68.66 E-value=1.8 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=17.0
Q ss_pred hccCcCCeeccCCCceEEEEE
Q 041089 688 KEFSSSNRIGKGSFGFVYKGN 708 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~ 708 (713)
+.|-+-.++|+||||.|||+.
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEe
Confidence 345556789999999999986
No 108
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=68.65 E-value=1.9 Score=45.12 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHhccCcCCeeccCCCceEEEEEeCC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
..++|.....||+|+||.||+|.-..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~ 66 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKS 66 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECC
Confidence 45567788999999999999998654
No 109
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=68.02 E-value=2.9 Score=43.18 Aligned_cols=18 Identities=50% Similarity=0.887 Sum_probs=15.4
Q ss_pred CeeccCCCceEEEEEeCC
Q 041089 694 NRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 694 ~~iG~GgfG~VYk~~l~~ 711 (713)
..||+|+||+||||...+
T Consensus 47 ~~iG~G~~g~V~~~~~~g 64 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRG 64 (362)
T ss_pred hhcccCCceeEEEEEeCC
Confidence 449999999999998754
No 110
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=67.28 E-value=3.2 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.5
Q ss_pred cCcCCeeccCCCceEEEEEe
Q 041089 690 FSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l 709 (713)
|.-..+||+|+||.||+|+.
T Consensus 39 ~~~~~~LG~G~fG~Vy~~~~ 58 (400)
T cd05105 39 LVLGRILGSGAFGKVVEGTA 58 (400)
T ss_pred eehhheecCCCCceEEEEEE
Confidence 34457899999999999974
No 111
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=67.25 E-value=3 Score=43.69 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=17.7
Q ss_pred ccCcCCeeccCCCceEEEEEe
Q 041089 689 EFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l 709 (713)
+|.-.+.||+|+||.||+|..
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~ 59 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATA 59 (374)
T ss_pred HceehheecCCCcccEEEEEE
Confidence 456678999999999999873
No 112
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.85 E-value=40 Score=35.42 Aligned_cols=108 Identities=20% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhh---cCcCCCCEEeccCccccccCcccccCC---CC
Q 041089 108 FRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAII---GNWLKLERLSLYDNQLTGQLRPSIGNL---SA 181 (713)
Q Consensus 108 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~ 181 (713)
+.++++|++.|.+....|..+..-..= +.++.|.++...-..+ ..-..+.+++|+.|.....+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 457788888887777666555321111 4455555443221111 111246778888887776666544322 34
Q ss_pred CcEEEccCCCCCC---CCCccccCCCCCCEEeCCCCcCc
Q 041089 182 LQTFDIAGNKLDG---RIPDSLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 182 L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~ 217 (713)
++.++.+...+.- .-+-..+.-+.+++.+++.|..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 6666666655431 22333445566777777766543
No 113
>PHA03209 serine/threonine kinase US3; Provisional
Probab=64.45 E-value=4.5 Score=42.04 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.9
Q ss_pred HhccCcCCeeccCCCceEEEEEeCC
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
..+|.....||+|+||.||+|...+
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~ 89 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPG 89 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECC
Confidence 3467778899999999999998754
No 114
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=63.99 E-value=3.9 Score=47.50 Aligned_cols=21 Identities=38% Similarity=0.765 Sum_probs=17.9
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.-.+.||+|.||.||+|++.+
T Consensus 695 ~l~~~lG~G~FG~VY~g~~~~ 715 (1025)
T KOG1095|consen 695 TLLRVLGKGAFGEVYEGTYSD 715 (1025)
T ss_pred EeeeeeccccccceEEEEEec
Confidence 346889999999999999854
No 115
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=63.94 E-value=4.3 Score=42.93 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.5
Q ss_pred cCcCCeeccCCCceEEEEEeC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.-...||+|+||.||+|...
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~ 59 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAH 59 (401)
T ss_pred eehhhhccCCCceeEEEEEEc
Confidence 445678999999999999864
No 116
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.90 E-value=5 Score=23.17 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=7.7
Q ss_pred CCCEEeCCCCccc
Q 041089 550 SIKELDLSCNNLS 562 (713)
Q Consensus 550 ~L~~L~Ls~N~l~ 562 (713)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4556666666655
No 117
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=63.37 E-value=4.3 Score=42.06 Aligned_cols=18 Identities=50% Similarity=0.565 Sum_probs=15.8
Q ss_pred CCeeccCCCceEEEEEeC
Q 041089 693 SNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~ 710 (713)
...||+|+||+||+|+..
T Consensus 79 ~~~lg~G~~g~V~~~~~~ 96 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHR 96 (353)
T ss_pred hhhccCCCCeEEEEEEEC
Confidence 467999999999999864
No 118
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.98 E-value=6.6 Score=23.12 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=9.1
Q ss_pred CCCCEEECCCCCCC
Q 041089 84 SFLRVINLANNRFH 97 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~ 97 (713)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777665
No 119
>PHA03210 serine/threonine kinase US3; Provisional
Probab=62.03 E-value=4.7 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=19.2
Q ss_pred HhccCcCCeeccCCCceEEEEEe
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l 709 (713)
.+.|.-...||+|+||+||++..
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICAL 169 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEE
Confidence 45677778999999999998865
No 120
>PF15102 TMEM154: TMEM154 protein family
Probab=60.46 E-value=7.5 Score=33.47 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=2.6
Q ss_pred EEEEeh
Q 041089 634 LKVVIP 639 (713)
Q Consensus 634 ~~i~~~ 639 (713)
+.|+++
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 344444
No 121
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=58.93 E-value=2.8 Score=43.83 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=14.4
Q ss_pred CCeeccCCCceEEEEEe
Q 041089 693 SNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l 709 (713)
-..||+|-||.||||.=
T Consensus 122 i~kIGeGTyg~VYkAr~ 138 (560)
T KOG0600|consen 122 IEKIGEGTYGQVYKARD 138 (560)
T ss_pred HHHhcCcchhheeEeee
Confidence 35699999999999963
No 122
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=58.60 E-value=5.4 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.3
Q ss_pred ccCcCCeeccCCCceEEEEEe
Q 041089 689 EFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l 709 (713)
+|...+.||+|+||.||+|+.
T Consensus 36 ~~~~~~~ig~G~~g~V~~~~~ 56 (302)
T cd05055 36 NLSFGKTLGAGAFGKVVEATA 56 (302)
T ss_pred HeEEcceeeccCCeeEEEEEE
Confidence 477789999999999999874
No 123
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=57.97 E-value=18 Score=29.11 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.1
Q ss_pred eEEEEehh
Q 041089 633 LLKVVIPV 640 (713)
Q Consensus 633 ~~~i~~~~ 640 (713)
++.+++.+
T Consensus 68 iagi~vg~ 75 (96)
T PTZ00382 68 IAGISVAV 75 (96)
T ss_pred EEEEEeeh
Confidence 33444433
No 124
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=56.75 E-value=11 Score=40.27 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.0
Q ss_pred ccCcCCeeccCCCceEEEEEeCCCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGEGG 713 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~g~ 713 (713)
.|+ .+-||.|++|.||||++.+|.
T Consensus 119 ~fd-~~plasaSigQVh~A~l~~G~ 142 (437)
T TIGR01982 119 EFE-EKPLAAASIAQVHRARLVDGK 142 (437)
T ss_pred hCC-CcceeeeehhheEEEEecCCC
Confidence 354 467999999999999998874
No 125
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=55.92 E-value=8.2 Score=40.85 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=21.7
Q ss_pred HHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
..+.|.--.+||+||||.||-+.=.+.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~T 165 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDT 165 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccC
Confidence 455688888999999999998876543
No 126
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=54.18 E-value=3.5 Score=42.01 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=21.4
Q ss_pred HHHHHhccCcCCeeccCCCceEEEEEe
Q 041089 683 LSKATKEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 683 l~~at~~f~~~~~iG~GgfG~VYk~~l 709 (713)
+...-+.|...+.||+|.|++||+|++
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~ 57 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATD 57 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhH
Confidence 334445577789999999999999976
No 127
>PHA03211 serine/threonine kinase US3; Provisional
Probab=52.71 E-value=8.8 Score=41.39 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=19.7
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+|.-...||+|+||.||+|.-+.
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~ 192 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPD 192 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECC
Confidence 46667889999999999998765
No 128
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=52.68 E-value=8.7 Score=39.84 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.3
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|..-++||+||||-||-....+
T Consensus 186 ~F~~~RvlGkGGFGEV~acqvra 208 (591)
T KOG0986|consen 186 TFRVYRVLGKGGFGEVCACQVRA 208 (591)
T ss_pred ceeeeEEEecccccceeEEEEec
Confidence 38888999999999999776544
No 129
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.93 E-value=11 Score=42.23 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.7
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.-...||+|.||.||+|+..+
T Consensus 489 ~~~~eLGegaFGkVf~a~~~~ 509 (774)
T KOG1026|consen 489 VFKEELGEGAFGKVFLAEAYG 509 (774)
T ss_pred eehhhhcCchhhhhhhhhccC
Confidence 346789999999999999865
No 130
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=51.13 E-value=7.9 Score=44.94 Aligned_cols=25 Identities=40% Similarity=0.761 Sum_probs=20.7
Q ss_pred hccCcCCeeccCCCceEEEEEeCCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.|.-+..||+||||+||+|+=.+|
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~~~~~ 722 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVATHSNG 722 (974)
T ss_pred eeEEEEeeeccccceEEEEeecCCC
Confidence 3467788999999999999986654
No 131
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=49.75 E-value=6.6 Score=29.85 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.4
Q ss_pred cccHHHHHHHHhccCc
Q 041089 677 IVSYAELSKATKEFSS 692 (713)
Q Consensus 677 ~~~~~~l~~at~~f~~ 692 (713)
-.||+|-.+|...|..
T Consensus 56 P~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAK 71 (75)
T ss_dssp GGGSSSHHHHHHHCSS
T ss_pred cccccCHHHHHHHHHh
Confidence 3689999999999964
No 132
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.44 E-value=11 Score=41.31 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.3
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++|.--.++|+|.||+||.+++.+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~ 391 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKG 391 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcC
Confidence 457778899999999999998854
No 133
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=49.19 E-value=6.6 Score=24.88 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.2
Q ss_pred HHhhhhhhh
Q 041089 651 FIVVYTRRT 659 (713)
Q Consensus 651 ~~~~~~~~~ 659 (713)
+++..++||
T Consensus 24 ~~YaCcykk 32 (38)
T PF02439_consen 24 FYYACCYKK 32 (38)
T ss_pred HHHHHHHcc
Confidence 333333333
No 134
>PHA03212 serine/threonine kinase US3; Provisional
Probab=48.05 E-value=12 Score=39.48 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.8
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.-...||+|+||.||++.-.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~ 114 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDN 114 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEEC
Confidence 34666788999999999999753
No 135
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.01 E-value=11 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=17.1
Q ss_pred eCcCCcccccCCcccccCCCCCEEeCCCCccc
Q 041089 531 LMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562 (713)
Q Consensus 531 ~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 562 (713)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35555555444445555555555555555554
No 136
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=44.81 E-value=7.2 Score=38.36 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred cCccccHHHHHH
Q 041089 674 QFPIVSYAELSK 685 (713)
Q Consensus 674 ~~~~~~~~~l~~ 685 (713)
+.+.+.-+|+.+
T Consensus 190 GiPvIF~dElee 201 (290)
T PF05454_consen 190 GIPVIFQDELEE 201 (290)
T ss_dssp ------------
T ss_pred CCceeccccccc
Confidence 344444455443
No 137
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=44.66 E-value=11 Score=40.87 Aligned_cols=19 Identities=47% Similarity=0.728 Sum_probs=16.6
Q ss_pred cCCeeccCCCceEEEEEeC
Q 041089 692 SSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 692 ~~~~iG~GgfG~VYk~~l~ 710 (713)
...+||.|-||-||+|+.-
T Consensus 393 l~r~iG~GqFGdVy~gvYt 411 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYT 411 (974)
T ss_pred HHHhhcCCcccceeeeEec
Confidence 3678999999999999973
No 138
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.46 E-value=13 Score=39.62 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=16.2
Q ss_pred CCCcEEeCCCCcCCccC--cccCcCCCCCceeeCcCC
Q 041089 501 KSLVQLDISRNHFSNEI--PVTLSACTTLEYLLMQGN 535 (713)
Q Consensus 501 ~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~ls~n 535 (713)
+.+..+.|++|++-... ..--...+.|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555666666654220 001112345555666665
No 139
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=41.07 E-value=8.8 Score=27.67 Aligned_cols=6 Identities=17% Similarity=0.860 Sum_probs=0.0
Q ss_pred HHhhhh
Q 041089 651 FIVVYT 656 (713)
Q Consensus 651 ~~~~~~ 656 (713)
++++|+
T Consensus 30 lf~iyR 35 (64)
T PF01034_consen 30 LFLIYR 35 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 334444
No 140
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=40.66 E-value=42 Score=34.37 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.3
Q ss_pred cCcCCeeccCCCceEEEEEeCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
|.-..++-+|-||.||+|.+.+
T Consensus 286 v~l~~llqEGtFGri~~gI~~e 307 (563)
T KOG1024|consen 286 VRLSCLLQEGTFGRIYRGIWRE 307 (563)
T ss_pred eechhhhhcCchhheeeeeecc
Confidence 6667788999999999997643
No 141
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.47 E-value=19 Score=38.44 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=31.8
Q ss_pred ccCCCCeeeecCCCCccc--CCccccCCCCCcEEEccCC--ccccccchhhc--CcCCCCEEeccCccccc
Q 041089 106 RLFRLETIVLSNNSFSGK--IPTNLSRCFNLIDFWVHTN--NLVGEIQAIIG--NWLKLERLSLYDNQLTG 170 (713)
Q Consensus 106 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~l~~n--~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~ 170 (713)
+.+.+..++|++|++... +..--...++|+.|+|++| .+... ..+. +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 445556666666654411 1111123456667777766 22211 1222 23457788888887653
No 142
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.85 E-value=26 Score=20.03 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.6
Q ss_pred CCCceeeCcCCc
Q 041089 525 TTLEYLLMQGNS 536 (713)
Q Consensus 525 ~~L~~L~ls~n~ 536 (713)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 143
>PHA03207 serine/threonine kinase US3; Provisional
Probab=34.73 E-value=23 Score=37.23 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.6
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.....||+|+||.||++.-.
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~ 114 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKH 114 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEc
Confidence 3555678999999999998753
No 144
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=34.41 E-value=29 Score=35.11 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=21.4
Q ss_pred cccHHHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 677 IVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 677 ~~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.++..|+.. -++||+|..|+|||+.-..
T Consensus 75 ~i~~~dle~-------~~~lG~G~gG~V~kv~Hk~ 102 (364)
T KOG0581|consen 75 GISLSDLER-------LGVLGSGNGGTVYKVRHKP 102 (364)
T ss_pred ccCHHHhhh-------hhhcccCCCcEEEEEEEcC
Confidence 356666654 4789999999999997643
No 145
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=32.39 E-value=30 Score=36.18 Aligned_cols=19 Identities=32% Similarity=0.657 Sum_probs=16.7
Q ss_pred CCeeccCCCceEEEEEeCC
Q 041089 693 SNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~~ 711 (713)
..++|+|.||.||+++-+.
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~ 58 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKS 58 (382)
T ss_pred hhhhCCCCceEEEEEEecC
Confidence 4789999999999998765
No 146
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=31.49 E-value=27 Score=37.30 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.5
Q ss_pred hccCcCCeeccCCCceEEEEEe
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l 709 (713)
+.|.-..+||+|+|.+||+|+=
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~ 94 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLARE 94 (604)
T ss_pred hhcchhheeccccceeEEEeee
Confidence 4466688999999999999974
No 147
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=29.01 E-value=27 Score=37.12 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=15.0
Q ss_pred CCeeccCCCceEEEEEe
Q 041089 693 SNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l 709 (713)
+.++|+|-||+||-|.-
T Consensus 569 devLGSGQFG~VYgg~h 585 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKH 585 (888)
T ss_pred HhhccCCcceeeeccee
Confidence 57899999999998864
No 148
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.61 E-value=29 Score=38.30 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=15.8
Q ss_pred CcCCeeccCCCceEEEEE
Q 041089 691 SSSNRIGKGSFGFVYKGN 708 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~ 708 (713)
.+.-++|+|-||+||.|.
T Consensus 578 ~ervVLGKGTYG~VYA~R 595 (1226)
T KOG4279|consen 578 NERVVLGKGTYGTVYAAR 595 (1226)
T ss_pred CceEEeecCceeEEEeec
Confidence 567899999999999885
No 149
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=27.90 E-value=44 Score=36.67 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.5
Q ss_pred hccCcCCeeccCCCceEEEEEeCC-C
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE-G 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~-g 712 (713)
..|++ .-||+|++|.||+|++.+ |
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G 144 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNG 144 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCC
Confidence 34766 789999999999999987 5
No 150
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=27.85 E-value=11 Score=36.17 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=13.5
Q ss_pred CeeccCCCceEEEEEe
Q 041089 694 NRIGKGSFGFVYKGNL 709 (713)
Q Consensus 694 ~~iG~GgfG~VYk~~l 709 (713)
-.||.|.||+|||-.-
T Consensus 70 g~iG~G~fG~V~KM~h 85 (361)
T KOG1006|consen 70 GEIGNGAFGTVNKMLH 85 (361)
T ss_pred HHhcCCcchhhhhhhc
Confidence 4699999999998654
No 151
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=27.42 E-value=38 Score=38.20 Aligned_cols=21 Identities=29% Similarity=0.522 Sum_probs=18.0
Q ss_pred CCeeccCCCceEEEEEeCCCC
Q 041089 693 SNRIGKGSFGFVYKGNLGEGG 713 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~~g~ 713 (713)
+++|-+|||+.||-|....+|
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~ 62 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGG 62 (738)
T ss_pred EEEEccCCcEEEEEEEecCCC
Confidence 578999999999999886653
No 152
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=26.98 E-value=28 Score=37.83 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.7
Q ss_pred CCeeccCCCceEEEEEe
Q 041089 693 SNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l 709 (713)
+.+||+|.|-+||||.=
T Consensus 45 ~evLGrGafKtVYka~D 61 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFD 61 (632)
T ss_pred hhhcccccceeeeeccc
Confidence 56799999999999953
No 153
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=22.40 E-value=42 Score=36.51 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=17.4
Q ss_pred cCcCCeeccCCCceEEEEEeC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~ 710 (713)
|.-..+||+|+||.||+|.-.
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~ 89 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRG 89 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEc
Confidence 455788999999999999753
No 154
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.04 E-value=63 Score=32.23 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.6
Q ss_pred hhhhhhhcc
Q 041089 653 VVYTRRTKL 661 (713)
Q Consensus 653 ~~~~~~~~~ 661 (713)
+++|+||++
T Consensus 277 LILRYRRKK 285 (299)
T PF02009_consen 277 LILRYRRKK 285 (299)
T ss_pred HHHHHHHHh
Confidence 334444433
No 155
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.26 E-value=1.3e+02 Score=28.04 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=8.2
Q ss_pred eeEEEEehhhHHHHH
Q 041089 632 TLLKVVIPVIGLVLI 646 (713)
Q Consensus 632 ~~~~i~~~~~~~~~~ 646 (713)
...++++++++++.+
T Consensus 36 ~~~I~iaiVAG~~tV 50 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTV 50 (221)
T ss_pred ceeeeeeeecchhhh
Confidence 344556666666633
No 156
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.21 E-value=62 Score=31.28 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.2
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.+++-||.|+||.|+..+=|.
T Consensus 56 ~PDRPIGYGAFGVVWsVTDPR 76 (449)
T KOG0664|consen 56 QPDRPIGYGAFGVVWSVTDPR 76 (449)
T ss_pred CCCCcccccceeEEEeccCCC
Confidence 567889999999999776554
Done!