Query 041089
Match_columns 713
No_of_seqs 616 out of 4853
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-82 9.4E-87 726.5 49.6 603 11-625 4-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-64 3.6E-69 580.8 39.0 517 60-587 126-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-59 1.2E-63 531.1 46.6 550 60-613 25-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 8.4E-57 2.9E-61 504.6 37.8 516 60-590 33-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 7E-56 2.4E-60 503.9 43.9 524 60-591 49-627 (680)
6 4eco_A Uncharacterized protein 100.0 5.8E-58 2E-62 512.8 26.0 498 15-589 26-603 (636)
7 3t6q_A CD180 antigen; protein- 100.0 7.6E-56 2.6E-60 496.9 35.4 530 65-612 17-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2E-55 6.9E-60 493.4 37.1 513 60-592 32-564 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 4.1E-55 1.4E-59 496.2 33.8 482 13-561 263-863 (876)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-54 4.5E-59 502.4 38.6 522 48-592 14-566 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-53 4E-58 479.1 36.4 527 64-613 15-562 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-52 3.9E-57 486.2 38.4 524 64-613 8-564 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-50 8.1E-55 446.9 32.6 498 47-591 3-515 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 4.7E-50 1.6E-54 446.9 34.2 492 60-593 28-538 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 1.7E-48 5.7E-53 434.4 38.1 511 65-612 12-534 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-47 4.2E-52 425.1 28.5 481 48-566 12-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-46 6E-51 424.1 37.9 514 60-590 52-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-47 3.9E-52 422.0 27.1 456 63-591 3-486 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 5.2E-47 1.8E-51 429.9 25.7 450 84-587 323-841 (876)
20 4eco_A Uncharacterized protein 100.0 8.6E-48 3E-52 430.5 18.7 466 84-612 81-603 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-45 9.4E-50 414.4 36.2 526 70-612 41-583 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-45 9.6E-50 403.0 27.9 453 87-612 3-484 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-43 4.5E-48 392.8 28.6 467 82-591 29-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-43 3.4E-48 393.7 26.8 463 63-566 34-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-43 1.3E-47 357.7 21.5 293 15-312 2-302 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 2.3E-41 7.8E-46 361.7 23.9 422 78-610 5-430 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 4.1E-40 1.4E-44 355.7 29.0 378 47-469 7-412 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 3.8E-39 1.3E-43 348.1 30.3 391 159-592 13-414 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 2.8E-39 9.5E-44 345.5 25.4 410 60-571 11-438 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3E-37 1E-41 330.1 29.2 190 78-290 36-225 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-37 2.6E-41 327.0 28.8 364 96-592 30-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6.1E-40 319.4 32.7 191 81-313 43-233 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 2E-36 6.8E-41 328.6 23.7 346 232-613 15-360 (477)
34 1o6v_A Internalin A; bacterial 100.0 1.9E-35 6.6E-40 319.1 30.3 344 60-466 46-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 5E-34 1.7E-38 309.7 29.0 203 84-311 32-234 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 4.6E-34 1.6E-38 301.2 27.7 349 38-441 3-352 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-35 1.2E-39 299.0 18.4 255 357-613 51-308 (313)
38 4fcg_A Uncharacterized protein 100.0 3E-35 1E-39 301.2 16.2 268 16-289 24-313 (328)
39 3oja_B Anopheles plasmodium-re 100.0 2.2E-33 7.4E-38 312.3 29.1 347 37-441 8-358 (597)
40 3o6n_A APL1; leucine-rich repe 100.0 4.2E-33 1.4E-37 294.0 26.9 333 156-612 45-377 (390)
41 3oja_B Anopheles plasmodium-re 100.0 5.8E-33 2E-37 308.9 27.0 160 429-621 233-392 (597)
42 4fmz_A Internalin; leucine ric 100.0 7E-32 2.4E-36 280.1 29.1 306 81-465 41-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 3.9E-31 1.3E-35 274.5 26.7 306 225-586 41-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 8.2E-34 2.8E-38 307.0 0.0 361 60-442 3-412 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-30 7.3E-35 266.7 25.3 215 86-311 35-251 (332)
46 1xku_A Decorin; proteoglycan, 100.0 4.2E-30 1.5E-34 264.3 26.5 216 64-313 35-252 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-33 4.3E-38 305.5 -1.1 361 60-443 28-442 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.7E-34 260.7 27.1 288 229-584 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 5.1E-29 1.8E-33 256.2 27.9 290 157-488 32-330 (330)
50 3ogk_B Coronatine-insensitive 100.0 2.9E-32 9.8E-37 304.7 -2.2 405 47-465 41-501 (592)
51 3ogk_B Coronatine-insensitive 100.0 9E-31 3.1E-35 292.6 2.2 400 60-467 73-528 (592)
52 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.6E-33 249.1 19.2 252 47-315 6-262 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 6.6E-29 2.3E-33 257.9 14.5 288 40-348 22-318 (353)
54 4fcg_A Uncharacterized protein 100.0 6.3E-28 2.1E-32 246.8 19.9 274 31-315 25-315 (328)
55 3zyi_A Leucine-rich repeat-con 100.0 3.4E-27 1.2E-31 253.5 23.5 233 356-590 75-307 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 4.4E-27 1.5E-31 251.7 23.3 233 356-590 64-296 (440)
57 2z66_A Variable lymphocyte rec 100.0 3.7E-27 1.3E-31 239.7 21.6 249 87-346 10-263 (306)
58 2z80_A TOLL-like receptor 2, v 100.0 8.2E-28 2.8E-32 249.7 16.3 181 81-265 28-210 (353)
59 1wwl_A Monocyte differentiatio 99.9 1.9E-29 6.6E-34 256.7 2.4 246 83-344 42-309 (312)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-27 5.7E-32 239.4 16.1 232 380-612 32-264 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 2.7E-26 9.3E-31 246.5 25.1 244 65-314 59-303 (452)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.3E-31 231.8 20.8 224 63-314 14-238 (285)
63 1wwl_A Monocyte differentiatio 99.9 2.7E-28 9.1E-33 248.3 5.3 246 330-587 42-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-26 6.6E-31 253.4 18.9 289 37-401 11-305 (622)
65 3zyj_A Leucine-rich repeat-con 99.9 1.6E-25 5.5E-30 239.6 25.3 244 65-314 48-292 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-27 2.4E-31 238.3 11.2 260 60-339 10-270 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8E-27 2.7E-31 237.9 11.0 268 85-421 11-280 (317)
68 2p1m_B Transport inhibitor res 99.9 4.1E-29 1.4E-33 279.4 -8.0 439 87-585 46-543 (594)
69 2p1m_B Transport inhibitor res 99.9 2.4E-28 8.2E-33 273.1 -2.0 462 46-562 33-544 (594)
70 2o6q_A Variable lymphocyte rec 99.9 3.1E-25 1.1E-29 220.6 20.6 218 45-291 2-219 (270)
71 3oja_A Leucine-rich immune mol 99.9 3.9E-26 1.3E-30 246.3 9.9 242 357-613 35-286 (487)
72 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-24 2.5E-28 232.9 26.7 265 84-472 40-304 (622)
73 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.2E-29 216.7 19.4 210 381-592 29-243 (276)
74 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.9E-30 240.3 14.2 253 66-338 16-269 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 8.9E-24 3.1E-28 211.1 19.5 209 84-315 28-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 4E-23 1.4E-27 205.4 22.3 206 357-590 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 5.4E-23 1.9E-27 206.0 20.7 206 376-589 6-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.3E-28 206.7 16.6 207 82-300 39-245 (272)
79 3m19_A Variable lymphocyte rec 99.9 5.4E-23 1.9E-27 202.0 16.6 192 46-243 3-194 (251)
80 3rfs_A Internalin B, repeat mo 99.9 6E-23 2E-27 204.3 17.0 207 60-278 41-247 (272)
81 2ast_B S-phase kinase-associat 99.9 5.3E-25 1.8E-29 227.2 1.5 268 46-353 35-315 (336)
82 1p9a_G Platelet glycoprotein I 99.9 2.6E-22 8.9E-27 201.1 21.0 201 80-288 6-206 (290)
83 3goz_A Leucine-rich repeat-con 99.9 7.8E-24 2.7E-28 220.1 6.6 266 65-351 3-304 (362)
84 2ast_B S-phase kinase-associat 99.9 3.1E-23 1E-27 213.9 7.4 257 84-378 47-315 (336)
85 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4E-28 221.2 3.5 236 78-314 26-316 (386)
86 4glp_A Monocyte differentiatio 99.9 2.5E-22 8.6E-27 204.0 13.0 203 357-587 92-308 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 4.8E-22 1.6E-26 193.8 14.4 196 85-311 32-236 (239)
88 4glp_A Monocyte differentiatio 99.9 1E-21 3.5E-26 199.5 17.0 226 83-314 63-307 (310)
89 2xwt_C Thyrotropin receptor; s 99.9 6.6E-22 2.2E-26 192.9 14.9 197 60-263 31-236 (239)
90 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 218.4 3.0 232 357-588 23-299 (362)
91 3m19_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 188.0 19.8 181 381-589 15-195 (251)
92 2ca6_A RAN GTPase-activating p 99.9 4.7E-23 1.6E-27 216.6 4.9 235 60-294 32-320 (386)
93 1h6u_A Internalin H; cell adhe 99.9 9.6E-21 3.3E-25 191.7 17.6 194 81-291 38-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 5.8E-21 2E-25 193.3 15.9 193 378-587 39-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 3.4E-21 1.1E-25 209.0 14.2 213 39-299 34-252 (571)
96 2o6s_A Variable lymphocyte rec 99.8 7.1E-21 2.4E-25 181.2 13.8 181 46-248 5-185 (208)
97 2o6s_A Variable lymphocyte rec 99.8 5.8E-20 2E-24 174.8 15.3 181 87-278 10-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 9.6E-20 3.3E-24 188.2 17.3 243 48-310 9-255 (350)
99 4ay9_X Follicle-stimulating ho 99.8 2.2E-19 7.5E-24 185.5 17.0 240 335-584 13-257 (350)
100 3cvr_A Invasion plasmid antige 99.8 2.7E-19 9.3E-24 194.1 16.6 186 357-571 60-252 (571)
101 3e6j_A Variable lymphocyte rec 99.8 4.8E-19 1.6E-23 170.8 16.1 164 40-219 11-174 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 9.5E-19 3.3E-23 167.5 14.4 157 407-591 14-171 (220)
103 4b8c_D Glucose-repressible alc 99.8 2E-20 6.8E-25 211.0 3.1 232 17-263 130-369 (727)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-18 2.2E-22 161.7 16.1 152 64-218 15-167 (220)
105 1h6t_A Internalin B; cell adhe 99.8 6E-18 2E-22 169.5 15.7 149 80-240 42-190 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 7.9E-18 2.7E-22 161.0 15.9 147 68-217 19-165 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 5.1E-18 1.7E-22 162.4 14.5 156 407-590 14-169 (220)
108 1m9s_A Internalin B; cell inva 99.8 6.2E-18 2.1E-22 185.7 16.8 171 81-266 40-210 (605)
109 1dce_A Protein (RAB geranylger 99.8 1.5E-20 5.2E-25 205.2 -5.2 203 81-307 346-566 (567)
110 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.3E-22 167.2 15.6 168 60-241 46-213 (291)
111 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.5E-22 159.6 16.3 156 406-590 21-176 (229)
112 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4E-22 183.5 16.3 193 83-292 20-212 (605)
113 2xot_A Amphoterin-induced prot 99.7 3.8E-18 1.3E-22 176.9 10.7 179 383-589 21-205 (361)
114 4ezg_A Putative uncharacterize 99.7 1E-17 3.5E-22 157.6 12.3 130 82-217 42-172 (197)
115 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 173.4 13.8 175 64-241 22-202 (361)
116 1w8a_A SLIT protein; signaling 99.7 6.5E-18 2.2E-22 158.0 10.0 155 455-613 11-166 (192)
117 4ezg_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 154.0 13.4 151 60-218 44-195 (197)
118 1dce_A Protein (RAB geranylger 99.7 4.6E-19 1.6E-23 193.5 -3.3 191 377-591 346-551 (567)
119 1xeu_A Internalin C; cellular 99.7 5.3E-17 1.8E-21 159.9 11.0 171 378-588 17-187 (263)
120 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.7E-21 157.7 12.0 162 63-239 22-183 (263)
121 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.9E-22 187.0 6.5 180 373-587 217-405 (727)
122 3sb4_A Hypothetical leucine ri 99.7 8.7E-17 3E-21 164.5 10.0 123 83-213 24-157 (329)
123 3sb4_A Hypothetical leucine ri 99.7 1.4E-16 4.7E-21 163.0 9.4 101 356-458 226-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.7 4.9E-16 1.7E-20 142.0 11.7 132 84-217 24-160 (168)
125 1w8a_A SLIT protein; signaling 99.6 8.1E-16 2.8E-20 143.6 13.1 127 64-193 12-139 (192)
126 2wfh_A SLIT homolog 2 protein 99.6 4.2E-16 1.4E-20 145.5 10.4 131 455-590 13-143 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 142.1 9.8 137 60-199 24-165 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 139.6 8.8 127 84-212 17-148 (149)
129 2je0_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 137.3 8.4 128 60-189 17-149 (149)
130 2o6r_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 136.9 13.0 132 455-590 10-141 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.6E-19 136.0 13.3 124 65-192 15-138 (193)
132 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 132.5 13.6 132 47-193 6-137 (177)
133 4fs7_A Uncharacterized protein 99.5 4.3E-13 1.5E-17 140.7 23.1 335 72-457 59-393 (394)
134 4fs7_A Uncharacterized protein 99.5 7.2E-13 2.5E-17 138.9 23.7 79 496-578 315-393 (394)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.6E-19 132.3 10.2 134 78-217 13-153 (176)
136 4fdw_A Leucine rich hypothetic 99.5 6.1E-13 2.1E-17 138.7 22.4 265 83-367 112-381 (401)
137 4fdw_A Leucine rich hypothetic 99.5 3.9E-13 1.3E-17 140.2 19.7 264 62-344 115-383 (401)
138 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.6E-21 149.4 -6.8 132 61-197 19-157 (198)
139 3g39_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 126.4 11.3 107 481-590 13-119 (170)
140 1ds9_A Outer arm dynein; leuci 99.5 2.6E-16 9E-21 148.0 -7.3 137 80-221 14-157 (198)
141 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.4E-18 124.2 11.4 107 481-590 16-122 (174)
142 1a9n_A U2A', U2A'; complex (nu 99.4 9.6E-14 3.3E-18 127.6 7.6 109 104-217 15-126 (176)
143 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 118.8 11.0 99 65-166 14-112 (170)
144 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 117.9 10.8 56 64-122 16-71 (174)
145 4gt6_A Cell surface protein; l 99.3 2.1E-10 7.3E-15 120.1 23.4 88 147-236 54-145 (394)
146 4gt6_A Cell surface protein; l 99.3 4.7E-10 1.6E-14 117.4 23.7 112 76-190 55-170 (394)
147 2ifg_A High affinity nerve gro 99.3 1.4E-11 4.9E-16 126.8 11.3 107 481-590 12-120 (347)
148 3un9_A NLR family member X1; l 99.3 2.6E-13 9E-18 140.0 -2.4 164 403-587 71-253 (372)
149 3un9_A NLR family member X1; l 99.2 6.9E-13 2.3E-17 136.9 -0.4 133 61-193 73-224 (372)
150 2ifg_A High affinity nerve gro 99.2 4.8E-11 1.7E-15 122.8 10.7 107 48-169 8-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 1.4E-07 4.8E-12 98.1 25.7 58 252-311 193-250 (379)
152 4h09_A Hypothetical leucine ri 99.0 8.7E-08 3E-12 99.7 24.1 144 399-572 212-355 (379)
153 2ra8_A Uncharacterized protein 98.9 4.6E-10 1.6E-14 114.6 4.1 102 60-164 107-227 (362)
154 2ra8_A Uncharacterized protein 98.8 1.4E-09 4.6E-14 111.1 4.7 186 376-584 135-341 (362)
155 3rw6_A Nuclear RNA export fact 98.8 6E-10 2E-14 107.6 -1.1 154 46-211 76-258 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 9.1E-09 3.1E-13 94.7 2.8 70 76-145 28-106 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 7.5E-08 2.5E-12 88.5 2.9 117 100-216 28-163 (185)
158 3rw6_A Nuclear RNA export fact 98.4 1.9E-07 6.4E-12 90.1 3.9 105 80-186 137-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.9E-11 77.6 3.8 83 109-191 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 6.7E-07 2.3E-11 79.7 0.7 84 501-584 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.4E-09 66.3 3.3 45 78-122 35-84 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.00095 3.2E-08 56.6 6.2 59 529-589 12-71 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00061 2.1E-08 61.8 4.1 84 59-142 40-136 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0053 1.8E-07 51.9 6.9 56 505-562 12-68 (130)
165 2qkw_B Protein kinase; three-h 92.8 0.016 5.6E-07 57.9 -0.6 36 677-712 28-63 (321)
166 2c30_A Serine/threonine-protei 92.5 0.05 1.7E-06 54.3 2.6 36 676-711 23-68 (321)
167 4aw2_A Serine/threonine-protei 92.3 0.035 1.2E-06 58.0 1.2 35 678-712 64-98 (437)
168 3omv_A RAF proto-oncogene seri 91.2 0.074 2.5E-06 52.3 2.0 21 691-711 39-59 (307)
169 4aoj_A High affinity nerve gro 90.1 0.086 2.9E-06 52.6 1.4 21 690-710 43-63 (329)
170 3p1a_A MYT1 kinase, membrane-a 89.1 0.035 1.2E-06 55.1 -2.3 24 688-711 57-80 (311)
171 4ase_A Vascular endothelial gr 85.9 0.21 7.2E-06 50.2 1.1 22 689-710 65-86 (353)
172 3kul_A Ephrin type-A receptor 85.0 0.38 1.3E-05 47.9 2.5 32 679-710 31-71 (325)
173 1mqb_A Ephrin type-A receptor 84.1 0.34 1.2E-05 48.4 1.7 18 693-710 49-66 (333)
174 2vd5_A DMPK protein; serine/th 83.5 0.26 8.8E-06 51.0 0.5 34 678-711 51-84 (412)
175 3v8s_A RHO-associated protein 82.8 0.29 1E-05 50.5 0.6 33 680-712 61-93 (410)
176 4fih_A Serine/threonine-protei 81.4 0.54 1.9E-05 46.9 1.9 22 690-711 76-97 (346)
177 3op5_A Serine/threonine-protei 81.0 0.47 1.6E-05 48.0 1.3 25 688-712 35-59 (364)
178 3dzo_A Rhoptry kinase domain; 80.5 0.39 1.3E-05 49.7 0.5 25 686-710 76-100 (413)
179 4g3f_A NF-kappa-beta-inducing 80.3 0.48 1.6E-05 47.1 1.1 23 688-710 58-80 (336)
180 4fie_A Serine/threonine-protei 77.7 0.82 2.8E-05 47.0 1.9 22 690-711 153-174 (423)
181 2qol_A Ephrin receptor; recept 76.0 0.95 3.2E-05 46.0 1.8 23 688-710 45-67 (373)
182 4dc2_A Protein kinase C IOTA t 75.7 0.94 3.2E-05 46.4 1.7 25 688-712 52-76 (396)
183 2w4o_A Calcium/calmodulin-depe 75.6 0.95 3.3E-05 45.4 1.7 24 688-711 53-76 (349)
184 4b99_A Mitogen-activated prote 75.3 1 3.4E-05 46.1 1.8 21 690-710 56-76 (398)
185 3llt_A Serine/threonine kinase 75.0 0.38 1.3E-05 48.6 -1.5 34 678-711 25-58 (360)
186 3v5w_A G-protein coupled recep 75.0 0.99 3.4E-05 49.2 1.7 24 688-711 189-212 (689)
187 2y7j_A Phosphorylase B kinase 74.5 1.4 4.8E-05 44.5 2.7 28 684-711 90-117 (365)
188 3lb7_A RAF proto-oncogene seri 74.2 1.2 4E-05 43.8 1.9 22 689-710 37-58 (307)
189 3l9p_A Anaplastic lymphoma kin 73.9 1.1 3.8E-05 45.3 1.7 22 689-710 72-93 (367)
190 2r5t_A Serine/threonine-protei 73.3 1.4 4.7E-05 44.7 2.2 23 689-711 39-61 (373)
191 3e7e_A HBUB1, BUB1A, mitotic c 72.8 0.98 3.3E-05 45.6 1.0 22 687-708 64-85 (365)
192 1qcf_A Haematopoetic cell kina 72.8 1.1 3.8E-05 46.8 1.4 25 688-712 188-212 (454)
193 3c1x_A Hepatocyte growth facto 72.7 0.98 3.4E-05 45.8 1.0 19 692-710 93-111 (373)
194 1j1b_A Glycogen synthase kinas 72.7 1.1 3.9E-05 46.2 1.5 22 690-711 56-77 (420)
195 3p86_A Serine/threonine-protei 72.3 1.2 4.1E-05 43.8 1.4 22 689-710 38-59 (309)
196 2zmd_A Dual specificity protei 72.1 1.2 4.1E-05 45.5 1.5 23 690-712 58-80 (390)
197 3i6u_A CDS1, serine/threonine- 72.1 1.6 5.6E-05 45.0 2.5 26 686-711 133-158 (419)
198 2vx3_A Dual specificity tyrosi 71.5 1.1 3.7E-05 45.6 1.0 25 687-711 53-77 (382)
199 2i1m_A Macrophage colony-stimu 71.4 1.3 4.6E-05 43.9 1.6 23 688-710 46-68 (333)
200 2psq_A Fibroblast growth facto 71.1 1.3 4.6E-05 44.7 1.5 21 689-709 82-102 (370)
201 1u5q_A Serine/threonine protei 71.0 1.4 4.6E-05 44.3 1.5 23 688-710 54-76 (348)
202 3cbl_A C-FES, proto-oncogene t 70.9 1.3 4.3E-05 45.1 1.3 23 689-711 115-137 (377)
203 3a99_A Proto-oncogene serine/t 70.4 1.6 5.5E-05 43.1 1.9 22 689-710 44-65 (320)
204 4e7w_A Glycogen synthase kinas 69.6 1.1 3.7E-05 46.0 0.4 23 690-712 42-64 (394)
205 2x4f_A Myosin light chain kina 69.2 1.4 4.8E-05 44.7 1.2 21 691-711 92-112 (373)
206 3an0_A Dual specificity mitoge 69.1 1.6 5.4E-05 43.5 1.5 22 689-710 52-73 (340)
207 1zth_A RIO1 serine protein kin 68.7 1.7 5.7E-05 41.4 1.5 21 692-712 51-72 (258)
208 1rdq_E PKA C-alpha, CAMP-depen 68.4 1.9 6.5E-05 43.2 1.9 24 688-711 41-64 (350)
209 1fmk_A C-SRC, P60-SRC, tyrosin 68.4 1.6 5.5E-05 45.6 1.4 24 689-712 185-208 (452)
210 1vzo_A Ribosomal protein S6 ki 68.3 1.5 5E-05 44.2 1.1 22 688-709 54-75 (355)
211 3c4z_A Rhodopsin kinase; Ser/T 68.2 1.9 6.4E-05 46.1 1.9 24 688-711 185-208 (543)
212 3nsz_A CK II alpha, casein kin 67.7 1.9 6.3E-05 42.7 1.7 22 689-710 37-58 (330)
213 1luf_A Muscle-specific tyrosin 67.5 1.8 6E-05 43.1 1.5 24 687-710 46-69 (343)
214 2owb_A Serine/threonine-protei 67.4 1.5 5.1E-05 43.7 0.9 24 689-712 42-65 (335)
215 3q60_A ROP5B; pseudokinase, tr 67.1 1.7 5.9E-05 43.9 1.3 23 688-710 62-84 (371)
216 1zar_A RIO2 kinase; serine kin 66.9 1.9 6.4E-05 41.7 1.5 23 690-712 92-114 (282)
217 3byv_A Rhoptry kinase; malaria 66.4 1.5 5.1E-05 44.5 0.7 23 688-710 73-95 (377)
218 3kvw_A DYRK2, dual specificity 66.1 2 6.7E-05 44.6 1.5 23 689-711 98-120 (429)
219 1kob_A Twitchin; kinase, intra 65.4 1.9 6.5E-05 43.9 1.2 24 688-711 51-74 (387)
220 1rjb_A FL cytokine receptor; k 65.1 1.8 6.2E-05 43.1 1.0 22 688-709 45-66 (344)
221 2v62_A Serine/threonine-protei 65.0 1.8 6.1E-05 43.3 1.0 23 689-711 38-60 (345)
222 3tt0_A Basic fibroblast growth 65.0 1.8 6.2E-05 44.0 1.0 21 689-709 70-90 (382)
223 4exu_A Mitogen-activated prote 64.9 2.2 7.4E-05 43.2 1.6 23 689-711 43-65 (371)
224 2pvf_A Fibroblast growth facto 64.8 2 6.8E-05 42.6 1.3 22 689-710 36-57 (334)
225 2acx_A G protein-coupled recep 64.2 2 7E-05 46.1 1.3 25 687-711 183-207 (576)
226 1wak_A Serine/threonine-protei 64.1 2.3 7.8E-05 43.3 1.6 23 689-711 38-60 (397)
227 3mdy_A Bone morphogenetic prot 64.0 2.1 7E-05 42.5 1.2 25 686-710 35-59 (337)
228 3pfq_A PKC-B, PKC-beta, protei 63.9 2.3 7.9E-05 47.0 1.7 24 688-711 341-364 (674)
229 2h8h_A Proto-oncogene tyrosine 62.9 2.2 7.4E-05 45.7 1.2 24 689-712 268-291 (535)
230 1opk_A P150, C-ABL, proto-onco 62.7 1.8 6.3E-05 45.8 0.5 22 690-711 222-243 (495)
231 4ejn_A RAC-alpha serine/threon 62.6 2.3 7.8E-05 44.3 1.3 24 688-711 148-171 (446)
232 3q5i_A Protein kinase; CDPK, m 62.3 2.7 9.1E-05 44.6 1.7 25 688-712 36-60 (504)
233 1k9a_A Carboxyl-terminal SRC k 62.2 2.5 8.4E-05 44.1 1.4 22 689-710 194-215 (450)
234 3rp9_A Mitogen-activated prote 61.2 2.7 9.2E-05 43.9 1.5 23 688-710 53-75 (458)
235 4gyi_A RIO2 kinase; protein ki 60.2 3.5 0.00012 41.7 2.0 21 693-713 100-120 (397)
236 2j0j_A Focal adhesion kinase 1 60.2 3.3 0.00011 45.6 2.0 22 689-710 391-412 (656)
237 3uto_A Twitchin; kinase, muscl 59.1 2.8 9.7E-05 45.2 1.2 23 688-710 157-179 (573)
238 2jii_A Serine/threonine-protei 58.5 2.6 8.8E-05 42.2 0.7 24 688-711 42-65 (352)
239 1nxk_A MAP kinase-activated pr 58.2 3.5 0.00012 42.1 1.7 18 694-711 68-85 (400)
240 1b6c_B TGF-B superfamily recep 58.0 3.4 0.00012 41.0 1.5 25 686-710 40-64 (342)
241 4fl3_A Tyrosine-protein kinase 56.4 3.4 0.00012 45.2 1.3 16 694-709 375-390 (635)
242 3lij_A Calcium/calmodulin depe 55.5 4 0.00014 43.1 1.7 22 689-710 38-59 (494)
243 3ttj_A Mitogen-activated prote 55.3 4.3 0.00015 42.5 1.8 23 688-710 62-84 (464)
244 3en9_A Glycoprotease, O-sialog 53.1 4.9 0.00017 43.0 1.9 20 691-710 339-358 (540)
245 2w1i_A JAK2; chromosomal rearr 52.2 4.4 0.00015 39.9 1.3 20 690-709 43-62 (326)
246 2ozo_A Tyrosine-protein kinase 52.0 5.6 0.00019 43.3 2.1 16 695-710 343-358 (613)
247 2lz0_A Uncharacterized protein 51.7 30 0.001 26.9 5.8 37 519-556 14-50 (100)
248 2ks1_B Epidermal growth factor 51.1 4.2 0.00014 26.1 0.6 7 653-659 32-38 (44)
249 2lz0_A Uncharacterized protein 45.0 48 0.0016 25.7 6.0 47 489-536 8-54 (100)
250 2jwa_A Receptor tyrosine-prote 41.8 4.1 0.00014 26.1 -0.6 9 652-660 31-39 (44)
251 2pzi_A Probable serine/threoni 40.9 6.6 0.00022 43.4 0.5 22 689-710 81-102 (681)
252 2l2t_A Receptor tyrosine-prote 37.8 23 0.00077 22.7 2.4 7 653-659 31-37 (44)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-82 Score=726.50 Aligned_cols=603 Identities=29% Similarity=0.433 Sum_probs=452.4
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccccccCCCCCcEEEEECCCCCccee---cC----------
Q 041089 11 SCFADSNEMDRLALLAIKSQLQDPLGVTKSWNNSINLCQWTGVTCGHRHQRVTELDLESQNIGGF---LS---------- 77 (713)
Q Consensus 11 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~---------- 77 (713)
++++++.++||+||++||+++.||. .+++|+.+++||+|.||+|+ .++|++|||+++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3445557889999999999999988 89999988899999999998 58999999999999886 43
Q ss_pred -------------ccccCCCCCCEEECCCCCCCccCch--hhhccCCCCeeeecCCCCcccCCccc-cCCCCCcEEEccC
Q 041089 78 -------------PYIGNLSFLRVINLANNRFHGQIPK--EVGRLFRLETIVLSNNSFSGKIPTNL-SRCFNLIDFWVHT 141 (713)
Q Consensus 78 -------------~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~ 141 (713)
+.++++++|++|||++|.+.|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4778889999999999999988888 89999999999999999998888776 7888999999999
Q ss_pred Cccccccchh---hcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcC
Q 041089 142 NNLVGEIQAI---IGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSG 218 (713)
Q Consensus 142 n~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 218 (713)
|.+++..|.. +.++++|++|++++|.+++..+. .++++|++|++++|.+++.+|. ++++++|++|++++|.+.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 9888877766 56666666666666665544332 4555555555555555544444 5555555555555555555
Q ss_pred CCcccccCCCcceEE----------------------EccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCC
Q 041089 219 MFPLSVCNISSLDEA----------------------YLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNA 276 (713)
Q Consensus 219 ~~~~~~~~l~~L~~L----------------------~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 276 (713)
.+|..+.++++|++| ++++|.+++.+|..++..+++|++|++++|.+++.+|..+.++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 555555544444444 4444444455555555334677777777777776677777777
Q ss_pred CCCcEEeccCcccccccccc-cCCCCCCCeEEcCCCcccCcCCCCcc-------------------ccccccC--CCCCc
Q 041089 277 SKLEWLELNENHFSGQVRIN-FNSLPNLSKLYLGRNNLGTRTSTDLD-------------------FITLLTN--CSKLV 334 (713)
Q Consensus 277 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~~~~l~~--~~~L~ 334 (713)
++|++|++++|.+++.+|.. +..+++|++|++++|.+.+..+..+. .+..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 77777777777776665544 66677777777777766532221110 0111111 45566
Q ss_pred EEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccc
Q 041089 335 KLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGN 414 (713)
Q Consensus 335 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 414 (713)
+|++++|.+++.+|..+..+. +|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 666666666666666665554 6777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCC
Q 041089 415 NIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP 494 (713)
Q Consensus 415 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~ 494 (713)
++.+.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++.|.+|..+..+..+. .|++++|+++|.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC-EEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC-EEECCCCccCCcCC
Confidence 77777777777777777777777777777777777777777777777777777777777666654 77777777776665
Q ss_pred cc----------------------------------------------------------------------ccCCCCCc
Q 041089 495 LE----------------------------------------------------------------------VGNLKSLV 504 (713)
Q Consensus 495 ~~----------------------------------------------------------------------~~~l~~L~ 504 (713)
.. +..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 43 34467899
Q ss_pred EEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCcc
Q 041089 505 QLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNH 584 (713)
Q Consensus 505 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~ 584 (713)
+||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccccCC
Q 041089 585 FEGEVPKKGVFSNETRISLTGNEQLCGGLGELHLPACHSVG 625 (713)
Q Consensus 585 l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~~~~c~~~~ 625 (713)
++|.+|..+++.++...++.|||.+||.+ .+.|....
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~ 752 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN 752 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence 99999999999999999999999999975 34786543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-64 Score=580.81 Aligned_cols=517 Identities=34% Similarity=0.492 Sum_probs=427.5
Q ss_pred CcEEEEECCCCCcceecCccc-cCCCCCCEEECCCCCCCccCchh---h----------------------hccCCCCee
Q 041089 60 QRVTELDLESQNIGGFLSPYI-GNLSFLRVINLANNRFHGQIPKE---V----------------------GRLFRLETI 113 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---~----------------------~~l~~L~~L 113 (713)
.+++.|+|++|.+.+..+..+ .++++|++|+|++|++++..|.. + ..+++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 467777777777776666554 66777777777777776655554 3 445566666
Q ss_pred eecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCC
Q 041089 114 VLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLD 193 (713)
Q Consensus 114 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 193 (713)
++++|.+++.+|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|.. .+++|++|++++|.++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 6666666655555 667777777777777777777777777777777777777776666554 6677777777777777
Q ss_pred CCCCccccCC-CCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCcc
Q 041089 194 GRIPDSLGQL-RNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQS 272 (713)
Q Consensus 194 ~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 272 (713)
+.+|..+... ++|++|++++|.+.+.+|..+.++++|++|++++|.++|.+|......+++|++|++++|.+++.+|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 7777777664 788888888888887788888888888888888888877787763447788888888888888777777
Q ss_pred CcCCC-CCcEEeccCcccccccccccCC--CCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccCh
Q 041089 273 LSNAS-KLEWLELNENHFSGQVRINFNS--LPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPH 349 (713)
Q Consensus 273 l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 349 (713)
+.+++ +|+.|++++|.+++..+..+.. +++|++|++++|.+++ ..+..+..+++|+.|++++|.+++.+|.
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE------ECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc------ccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 77776 7888888888887777776665 7788888888888776 5567788999999999999999999999
Q ss_pred hhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCC
Q 041089 350 SIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTL 429 (713)
Q Consensus 350 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 429 (713)
.+..+. +|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++
T Consensus 437 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 988875 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcc---------------------------------
Q 041089 430 LNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGIT--------------------------------- 476 (713)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--------------------------------- 476 (713)
|++|++++|++++.+|..+..+++|++|++++|++.|.+|..++...
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999998765421
Q ss_pred ------------------------------------cccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCccc
Q 041089 477 ------------------------------------PLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVT 520 (713)
Q Consensus 477 ------------------------------------~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 520 (713)
..++.||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 12347999999999999999999999999999999999999999
Q ss_pred CcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcc
Q 041089 521 LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 521 ~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
++.+++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+....+.+|+.-+
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 999999999999999999999999999999999999999999999975 445566667778887444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-59 Score=531.12 Aligned_cols=550 Identities=21% Similarity=0.200 Sum_probs=469.3
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999988888999999999999999999999999999999999999999999655567999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCcccc--CCCCCCEEeCCCCcCc
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLG--QLRNLNYLGTSENDFS 217 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~ 217 (713)
++|.+.+..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999998899999999999999999999977666654 5689999999999999
Q ss_pred CCCcccccCC---------------------------CcceEEEccCCCCcccCCccccCCCC--CCCEEeCCCCcCccc
Q 041089 218 GMFPLSVCNI---------------------------SSLDEAYLFKNRFKGSLPVCLGFNLP--KLTVLVVAQNNLTGF 268 (713)
Q Consensus 218 ~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~ 268 (713)
+..|..+..+ ++|+.|++++|.+++..|..+. .++ +|++|++++|.+++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 8888776654 4566777777777766666554 443 499999999998888
Q ss_pred CCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCcccc----ccccCCCCCcEEeeeccccc
Q 041089 269 LPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFI----TLLTNCSKLVKLGLVFNRFG 344 (713)
Q Consensus 269 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~ 344 (713)
.|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+... ...++ ..+..+++|++|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-cccccccChhhcccCCCCCEEECCCCccC
Confidence 88888889999999999999888888888889999999998765432110 00111 15678899999999999999
Q ss_pred cccChhhhhccccccEEEccCCceee--cCCccccCC--CCCCEEeccCCcccccCCcccccccccceeecccccccccC
Q 041089 345 GALPHSIANLSTTMTLIAMAGNQISG--TIPPEIRNL--FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGII 420 (713)
Q Consensus 345 ~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 420 (713)
+..+..+..+. +|+++++++|.+.. ..+..+..+ ++|+.|++++|.+++..|..+..+++|++|++++|++.+.+
T Consensus 343 ~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 87777776664 89999999987543 222233332 58999999999999999999999999999999999998776
Q ss_pred C-ccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCC--CCCCccccCcccccchhcccCCcCCCCCCccc
Q 041089 421 P-DSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLN--GTLPPQIFGITPLSKLLDLSENHFSGSIPLEV 497 (713)
Q Consensus 421 ~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~ 497 (713)
| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+..+. .|++++|++++..+..+
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~-~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANINDDML 500 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC-EEECCSSCCCCCCTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC-EEECCCCCCCcCChhhh
Confidence 6 67899999999999999999888899999999999999999987 56788888777775 99999999998888889
Q ss_pred cCCCCCcEEeCCCCcCCccCc--------ccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccC
Q 041089 498 GNLKSLVQLDISRNHFSNEIP--------VTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHL 569 (713)
Q Consensus 498 ~~l~~L~~L~Ls~n~l~~~~p--------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 569 (713)
..+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|.++++|+.|+|++|++++..+..|
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 999999999999999986422 237889999999999999996555679999999999999999998777788
Q ss_pred CCCCCCCEEeCCCccCcccCCCC-C-CCCCCCcccccCCCCCCCCC
Q 041089 570 QDLPFLEYLNLSYNHFEGEVPKK-G-VFSNETRISLTGNEQLCGGL 613 (713)
Q Consensus 570 ~~l~~L~~L~ls~n~l~~~~p~~-~-~~~~l~~~~~~~n~~lc~~~ 613 (713)
..+++|++|++++|++++..|.. . .++.++.+++.+||+.|++.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999999876643 2 46789999999999999764
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.4e-57 Score=504.62 Aligned_cols=516 Identities=20% Similarity=0.201 Sum_probs=361.4
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
..++.|+|++|.+++..+.+|.++++|++|+|++|++.+..|.+|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46788888888888877778888888888888888888777888888888888888888888777888888888888888
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCC--EEeCCCCcCc
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLN--YLGTSENDFS 217 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~ 217 (713)
++|.+.+..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..|..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88888877677788888888888888888764444455588888888888888876677788888887 7888888887
Q ss_pred CCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCc-----ccCCccCcCCC--CCcEEeccCcccc
Q 041089 218 GMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT-----GFLPQSLSNAS--KLEWLELNENHFS 290 (713)
Q Consensus 218 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~--~L~~L~l~~n~l~ 290 (713)
+..|..+. ..+|+++++++|... +..+. .+.+++...+....+. ...+..+..+. +|+.|++++|.++
T Consensus 193 ~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 193 GIEPGAFD-SAVFQSLNFGGTQNL---LVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp EECTTTTT-TCEEEEEECTTCSCH---HHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccChhHhh-hccccccccCCchhH---HHHhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 76666544 357888888777522 11111 2333222222211111 11112222222 6778888888887
Q ss_pred cccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceee
Q 041089 291 GQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISG 370 (713)
Q Consensus 291 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 370 (713)
+..+..|..+++|++|++++|.++. ++..+..+++|++|++++|.+.+..|..+..+. +|+.|++++|.+.+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRL 339 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCC
T ss_pred ccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCccc
Confidence 7777777778888888888887753 334456677777777777777765555555553 67777777777665
Q ss_pred cCCcc-ccCCCCCCEEeccCCcccccC--CcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCCh-
Q 041089 371 TIPPE-IRNLFNLNGLGLEYNQLTGTI--PPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS- 446 (713)
Q Consensus 371 ~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 446 (713)
.+|.. +..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 55443 667777777777777776554 55667777777777777777766667777777777777777777665443
Q ss_pred hhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCC---CCCccccCCCCCcEEeCCCCcCCccCcccCcC
Q 041089 447 YLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSG---SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSA 523 (713)
Q Consensus 447 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 523 (713)
.+..+++|++|++++|.+.+..|..+..++.+. .|++++|.+.+ ..+..+..+++|++|++++|++++..|..|..
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCC-EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 366777777777777777665565555555543 67777777665 22345667777777777777777777777777
Q ss_pred CCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 524 CTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 524 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
+++|++|++++|++++..|..+..+++| .|++++|++++..|..+..+++|++|++++|++.|.++
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 7777777777777777777777777777 77777777777767667777777777777777777665
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-56 Score=503.91 Aligned_cols=524 Identities=20% Similarity=0.214 Sum_probs=455.7
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+|++|.+.+..+..+.++++|++|+|++|++++..+..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 57999999999999998999999999999999999999666668999999999999999999777788999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCccccc--CCCCCcEEEccCCCCCCCCCccccCC--------------
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIG--NLSALQTFDIAGNKLDGRIPDSLGQL-------------- 203 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l-------------- 203 (713)
++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99999999999999999999999999999987777654 56899999999999998777766654
Q ss_pred -------------CCCCEEeCCCCcCcCCCcccccCCCc--ceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCccc
Q 041089 204 -------------RNLNYLGTSENDFSGMFPLSVCNISS--LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGF 268 (713)
Q Consensus 204 -------------~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 268 (713)
++|+.|++++|.+.+..|..+.+++. |++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence 56788888889898888888888765 99999999999977776665 899999999999999999
Q ss_pred CCccCcCCCCCcEEeccCcccccc-----cc----cccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeee
Q 041089 269 LPQSLSNASKLEWLELNENHFSGQ-----VR----INFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLV 339 (713)
Q Consensus 269 ~~~~l~~l~~L~~L~l~~n~l~~~-----~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 339 (713)
.|..+..+++|+.|++++|...+. +| ..|..+++|++|++++|.+.+. .+..+..+++|++|+++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI------KSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC------CTTTTTTCTTCCEEECT
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC------ChhHhccccCCcEEECC
Confidence 999999999999999998755431 22 3678899999999999999873 34457789999999999
Q ss_pred ccccccc-cCh-hhhhc-cccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCC-cccccccccceeeccccc
Q 041089 340 FNRFGGA-LPH-SIANL-STTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIP-PAIGELRNLQYLGLVGNN 415 (713)
Q Consensus 340 ~n~~~~~-~~~-~~~~~-~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 415 (713)
+|.+... ++. .+... ..+++.+++++|++++..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 9976432 222 22222 1489999999999999999999999999999999999987665 688999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCccc--ccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCC
Q 041089 416 IRGIIPDSIGNLTLLNILQLGFNKLQ--GSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSI 493 (713)
Q Consensus 416 l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~ 493 (713)
+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++.+..+..+..+..+ +.|++++|++++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccc
Confidence 99888899999999999999999987 5788999999999999999999995555556666665 49999999998642
Q ss_pred C--------ccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccC
Q 041089 494 P--------LEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI 565 (713)
Q Consensus 494 ~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 565 (713)
+ ..+..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 23788999999999999999555557999999999999999999877788899999999999999999888
Q ss_pred CccCC-CCCCCCEEeCCCccCcccCCC
Q 041089 566 PIHLQ-DLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 566 p~~l~-~l~~L~~L~ls~n~l~~~~p~ 591 (713)
|..+. .+++|+++++++|++.|.++.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 87777 789999999999999999875
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-58 Score=512.81 Aligned_cols=498 Identities=21% Similarity=0.265 Sum_probs=356.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCC--------CCCCCCCCCCCCCc---cccccCCCCCcEEEEECCCCCcceecCccccCC
Q 041089 15 DSNEMDRLALLAIKSQLQDPLG--------VTKSWNNSINLCQW---TGVTCGHRHQRVTELDLESQNIGGFLSPYIGNL 83 (713)
Q Consensus 15 ~~~~~~~~~ll~~k~~~~~~~~--------~~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l 83 (713)
+....|+.||.++++++.++.. ...+|+.+.+||.| .||.|+.. ++|++|+|+++++.|.+|++++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 3445799999999999864422 23479988999999 99999865 899999999999999999999999
Q ss_pred CCCCEEECCCCCC------Cc------cCchhhhccCCCCeeeecCCCCcccCCccccC-CCCCcEEEccCCccccccch
Q 041089 84 SFLRVINLANNRF------HG------QIPKEVGRLFRLETIVLSNNSFSGKIPTNLSR-CFNLIDFWVHTNNLVGEIQA 150 (713)
Q Consensus 84 ~~L~~L~Ls~n~l------~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~~~ 150 (713)
++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+.. +..+..+++....+.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~----- 176 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK----- 176 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC-----
T ss_pred ccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccc-----
Confidence 9999999999976 33 455544 56677 888888888877776652 122222222211111
Q ss_pred hhcCcCCCCEEecc--CccccccCcccccCCCCCcEEEccCCCCCCC-----------------CCcccc--CCCCCCEE
Q 041089 151 IIGNWLKLERLSLY--DNQLTGQLRPSIGNLSALQTFDIAGNKLDGR-----------------IPDSLG--QLRNLNYL 209 (713)
Q Consensus 151 ~l~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L 209 (713)
......++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|+.++ ++++|++|
T Consensus 177 -~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 177 -KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp -CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred -cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 0111223333332 466666 677777777777777777777764 777777 77777777
Q ss_pred eCCCCcCcCCCcccccCCCcceEEEccCCC-Ccc-cCCccccCCC------CCCCEEeCCCCcCcccCCc--cCcCCCCC
Q 041089 210 GTSENDFSGMFPLSVCNISSLDEAYLFKNR-FKG-SLPVCLGFNL------PKLTVLVVAQNNLTGFLPQ--SLSNASKL 279 (713)
Q Consensus 210 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L 279 (713)
++++|.+.+.+|..++++++|++|++++|. ++| .+|..++ .+ ++|++|++++|+++ .+|. .+.++++|
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 777777777777777777777777777776 777 6776665 43 78888888888888 6777 78888888
Q ss_pred cEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhcccccc
Q 041089 280 EWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMT 359 (713)
Q Consensus 280 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 359 (713)
++|++++|.++|.+| .+..+++|+.|++++|.+
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l---------------------------------------------- 365 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI---------------------------------------------- 365 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEE----------------------------------------------
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc----------------------------------------------
Confidence 888888888887766 555555555555544433
Q ss_pred EEEccCCceeecCCccccCCCC-CCEEeccCCcccccCCccccccc--ccceeecccccccccCCcccc-------CCCC
Q 041089 360 LIAMAGNQISGTIPPEIRNLFN-LNGLGLEYNQLTGTIPPAIGELR--NLQYLGLVGNNIRGIIPDSIG-------NLTL 429 (713)
Q Consensus 360 ~l~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~ 429 (713)
+ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|++.+.+|..+. .+++
T Consensus 366 ---------~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 366 ---------T-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ---------E-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred ---------c-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 3 33444555555 666666666666 4555554433 666666666666666666665 5667
Q ss_pred CCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCccc-------ccchhcccCCcCCCCCCcccc--CC
Q 041089 430 LNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITP-------LSKLLDLSENHFSGSIPLEVG--NL 500 (713)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------l~~~l~ls~n~~~~~~~~~~~--~l 500 (713)
|++|++++|.++...+..+..+++|++|++++|++. .+|..++.... .++.|++++|+++ .+|..+. .+
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 777777777777332333445777777777777777 66666554331 3347788888877 6777776 88
Q ss_pred CCCcEEeCCCCcCCccCcccCcCCCCCceeeC------cCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCC
Q 041089 501 KSLVQLDISRNHFSNEIPVTLSACTTLEYLLM------QGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPF 574 (713)
Q Consensus 501 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 574 (713)
++|++|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~ 588 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN 588 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc
Confidence 889999999998886 7888888889999988 56788889999999999999999999999 57787765 78
Q ss_pred CCEEeCCCccCcccC
Q 041089 575 LEYLNLSYNHFEGEV 589 (713)
Q Consensus 575 L~~L~ls~n~l~~~~ 589 (713)
|++|++++|++...-
T Consensus 589 L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 589 ISVLDIKDNPNISID 603 (636)
T ss_dssp CCEEECCSCTTCEEE
T ss_pred CCEEECcCCCCcccc
Confidence 999999999887543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.6e-56 Score=496.86 Aligned_cols=530 Identities=18% Similarity=0.187 Sum_probs=451.7
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++.++..+.. +|..+. +++++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|++++|.+
T Consensus 17 ~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4444445543 444444 3799999999999988899999999999999999999999999999999999999999999
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSV 224 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 224 (713)
.+..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 99999999999999999999999998778889999999999999999997444455569999999999999999889999
Q ss_pred cCCCcce--EEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccc-----ccccccc
Q 041089 225 CNISSLD--EAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFS-----GQVRINF 297 (713)
Q Consensus 225 ~~l~~L~--~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l 297 (713)
..+++|+ .+++++|.+.+..|..+ ....|+.|++++|.. ++..+..+.++....+....+. ...+..+
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHh--hhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHh
Confidence 9999999 89999999997666554 457899999998862 3334444554444333322221 1222333
Q ss_pred CCCC--CCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCcc
Q 041089 298 NSLP--NLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPE 375 (713)
Q Consensus 298 ~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 375 (713)
..+. +|+.|++++|.++... ...+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+.+..|..
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNIS------SNTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCC------TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGC
T ss_pred chhhcCceeEEEeecCccCccC------HHHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhh
Confidence 3333 7999999999987633 344678899999999999998 7787776654 9999999999999888889
Q ss_pred ccCCCCCCEEeccCCcccccCCc-ccccccccceeecccccccccC--CccccCCCCCCEEEccCCcccccCChhhhcCC
Q 041089 376 IRNLFNLNGLGLEYNQLTGTIPP-AIGELRNLQYLGLVGNNIRGII--PDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQ 452 (713)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 452 (713)
+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..++
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 99999999999999999876655 4889999999999999998776 77899999999999999999988899999999
Q ss_pred CCcEEeCCCCCCCCCCCcc-ccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCcc---CcccCcCCCCCc
Q 041089 453 NLMQLSAPNNQLNGTLPPQ-IFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNE---IPVTLSACTTLE 528 (713)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~~~~L~ 528 (713)
+|++|++++|++.+..|.. +..+..+ +.|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred cCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 9999999999999777766 4455555 5999999999999999999999999999999999873 335688999999
Q ss_pred eeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC-CCCCCCCcccccCCC
Q 041089 529 YLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK-GVFSNETRISLTGNE 607 (713)
Q Consensus 529 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~l~~~~~~~n~ 607 (713)
+|++++|++++..|..|..+++|+.|+|++|++++..|..+..++.| +|++++|++++..|.. ..++.++.+++.+||
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999 9999999999877653 446788999999999
Q ss_pred CCCCC
Q 041089 608 QLCGG 612 (713)
Q Consensus 608 ~lc~~ 612 (713)
+.|.+
T Consensus 559 ~~c~c 563 (606)
T 3t6q_A 559 LDCTC 563 (606)
T ss_dssp EECSG
T ss_pred ccccC
Confidence 99864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-55 Score=493.42 Aligned_cols=513 Identities=21% Similarity=0.207 Sum_probs=435.3
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.++++|+|++|.+.+..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57899999999999988889999999999999999999888889999999999999999999888999999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCC----EEeCCCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLN----YLGTSEN 214 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n 214 (713)
++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+.+|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998888889999999999999999986 5689999999999999999999987788887776665 8999999
Q ss_pred cCcCCCcccccCCCcceEEEccCCCCccc-CCccccCCCCCCCEEeCCCCcCcc------cCCccCcCCC--CCcEEec-
Q 041089 215 DFSGMFPLSVCNISSLDEAYLFKNRFKGS-LPVCLGFNLPKLTVLVVAQNNLTG------FLPQSLSNAS--KLEWLEL- 284 (713)
Q Consensus 215 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~--~L~~L~l- 284 (713)
.+.+..+..+... +|++|++++|.+++. +|..+. .++.|+.+.+..+.+.+ ..+..+..+. .++.+++
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHH-TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhc-cccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 9987666555544 899999999988744 444444 88889888876544332 1111222222 4566777
Q ss_pred cCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEcc
Q 041089 285 NENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMA 364 (713)
Q Consensus 285 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 364 (713)
..+.+.+..+. +..+++|+.|++++|.+... + .+..+++|++|++++|.+ +.+|.. . .++|+.++++
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-------~-~l~~~~~L~~L~l~~n~l-~~lp~~--~-l~~L~~L~l~ 336 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-------E-DVPKHFKWQSLSIIRCQL-KQFPTL--D-LPFLKSLTLT 336 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-------C-CCCTTCCCSEEEEESCCC-SSCCCC--C-CSSCCEEEEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccchhh-------h-hccccccCCEEEcccccC-cccccC--C-CCccceeecc
Confidence 66788887776 88999999999999988542 2 577889999999999999 678843 3 3589999999
Q ss_pred CCceeecCCccccCCCCCCEEeccCCccccc--CCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccc
Q 041089 365 GNQISGTIPPEIRNLFNLNGLGLEYNQLTGT--IPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQG 442 (713)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 442 (713)
+|...+.+ .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+
T Consensus 337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 99665554 567899999999999999866 47888999999999999999885 56889999999999999999998
Q ss_pred cCC-hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCC-CCCccccCCCCCcEEeCCCCcCCccCccc
Q 041089 443 SIP-SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSG-SIPLEVGNLKSLVQLDISRNHFSNEIPVT 520 (713)
Q Consensus 443 ~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 520 (713)
..| ..+..+++|++|++++|++.+..|..+..+..+. .|++++|.+.+ .+|..+..+++|++|++++|++++..|..
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC-EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 777 6888999999999999999988888887777765 89999999987 47888999999999999999999888999
Q ss_pred CcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCC-CCCEEeCCCccCcccCCCC
Q 041089 521 LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLP-FLEYLNLSYNHFEGEVPKK 592 (713)
Q Consensus 521 ~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~~p~~ 592 (713)
+..+++|++|++++|++++.+|..+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999998999999999999999999998 5677788887 5999999999999888753
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-55 Score=496.16 Aligned_cols=482 Identities=20% Similarity=0.246 Sum_probs=357.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--CCc------------cccccCCCCCcEEEEECCCCCcc
Q 041089 13 FADSNEMDRLALLAIKSQLQDPLGVTKSWNNSI-----NL--CQW------------TGVTCGHRHQRVTELDLESQNIG 73 (713)
Q Consensus 13 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~ 73 (713)
.++...+|+.||++||+++.+| +|+.+. +| |.| .||.|+. .++|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3445577999999999999876 676443 55 999 9999986 589999999999999
Q ss_pred eecCccccCCCCCCEEEC-CCCCCCccCchhh------------------------------------------------
Q 041089 74 GFLSPYIGNLSFLRVINL-ANNRFHGQIPKEV------------------------------------------------ 104 (713)
Q Consensus 74 ~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~------------------------------------------------ 104 (713)
|.+|+++++|++|++|+| ++|.+.|..|...
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8888776533210
Q ss_pred ---hccCCCCeeeecC--CCCcccCCccccCCCCCcEEEccCCcccc-----------------ccchhhc--CcCCCCE
Q 041089 105 ---GRLFRLETIVLSN--NSFSGKIPTNLSRCFNLIDFWVHTNNLVG-----------------EIQAIIG--NWLKLER 160 (713)
Q Consensus 105 ---~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~L~~ 160 (713)
.....++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1112333444443 77887 89999999999999999999998 4888877 9999999
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCC-CCC-CCCccccCCC-------CCCEEeCCCCcCcCCCcc--cccCCCc
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNK-LDG-RIPDSLGQLR-------NLNYLGTSENDFSGMFPL--SVCNISS 229 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~--~~~~l~~ 229 (713)
|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ +|++|++++|.+. .+|. .+.++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 7887666555 9999999999999 8888 8999999
Q ss_pred ceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCC-CcEEeccCcccccccccccCCCC--CCCeE
Q 041089 230 LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASK-LEWLELNENHFSGQVRINFNSLP--NLSKL 306 (713)
Q Consensus 230 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L 306 (713)
|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 999999999999 888 554 8999999999999999 78888999999 999999999998 6676666554 38888
Q ss_pred EcCCCcccCcCCCCcccccccc--CCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccc-cCCCCCC
Q 041089 307 YLGRNNLGTRTSTDLDFITLLT--NCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEI-RNLFNLN 383 (713)
Q Consensus 307 ~l~~n~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~-~~l~~L~ 383 (713)
++++|.+.+..+. ++..+. .++ +|+.|++++|.++ .+|..+ ..+++|+
T Consensus 650 ~Ls~N~l~g~ip~---l~~~l~~~~~~-------------------------~L~~L~Ls~N~L~-~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 650 DFSYNKIGSEGRN---ISCSMDDYKGI-------------------------NASTVTLSYNEIQ-KFPTELFATGSPIS 700 (876)
T ss_dssp ECCSSCTTTTSSS---CSSCTTTCCCC-------------------------CEEEEECCSSCCC-SCCHHHHHTTCCCS
T ss_pred ECcCCcCCCcccc---chhhhccccCC-------------------------CcCEEEccCCcCC-ccCHHHHccCCCCC
Confidence 8888877652110 001111 111 3445555555554 333333 3566666
Q ss_pred EEeccCCcccccCCcccc--------cccccceeecccccccccCCcccc--CCCCCCEEEccCCcccccCChhhhcCCC
Q 041089 384 GLGLEYNQLTGTIPPAIG--------ELRNLQYLGLVGNNIRGIIPDSIG--NLTLLNILQLGFNKLQGSIPSYLGKCQN 453 (713)
Q Consensus 384 ~L~L~~n~l~~~~~~~l~--------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 453 (713)
.|+|++|.++ .+|..+. ++++|++|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++
T Consensus 701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 6777666666 3333322 2347777777777777 5666665 77777777777777775 6777777777
Q ss_pred CcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCc
Q 041089 454 LMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQ 533 (713)
Q Consensus 454 L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls 533 (713)
|+.|++++|+ ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|+|+
T Consensus 778 L~~L~Ls~N~-------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 778 LKAFGIRHQR-------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCEEECCCCB-------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred CCEEECCCCC-------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence 7777777765 4566666667777777777777777777777 46666544 466666666
Q ss_pred CCcccccCCcccccCCCCCEEeCCCCcc
Q 041089 534 GNSFNGSIPQSLNALKSIKELDLSCNNL 561 (713)
Q Consensus 534 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 561 (713)
+|++....+..+.....+..+.|.+|.+
T Consensus 836 ~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 836 DNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp SCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCCCCccChHHccccccchheeecCCCc
Confidence 6666655555444443444444444443
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-54 Score=502.40 Aligned_cols=522 Identities=20% Similarity=0.202 Sum_probs=430.8
Q ss_pred CCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccC-chhhhccCCCCeeeecCCCCcccCCc
Q 041089 48 CQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQI-PKEVGRLFRLETIVLSNNSFSGKIPT 126 (713)
Q Consensus 48 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~ 126 (713)
|.|..|.+ ...+++.|||++|.+++..+.+|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 67888887 3578999999999999999999999999999999999766555 78899999999999999999999999
Q ss_pred cccCCCCCcEEEccCCccccccchh--hcCcCCCCEEeccCccccccCc-ccccCCCCCcEEEccCCCCCCCCCccccCC
Q 041089 127 NLSRCFNLIDFWVHTNNLVGEIQAI--IGNWLKLERLSLYDNQLTGQLR-PSIGNLSALQTFDIAGNKLDGRIPDSLGQL 203 (713)
Q Consensus 127 ~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 203 (713)
.|.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999877665 8999999999999999987655 579999999999999999998889988887
Q ss_pred --CCCCEEeCCCCcCcCCCcccccCCCc------ceEEEccCCCCcccCCccccCC--CCCCCEEeCCCC---------c
Q 041089 204 --RNLNYLGTSENDFSGMFPLSVCNISS------LDEAYLFKNRFKGSLPVCLGFN--LPKLTVLVVAQN---------N 264 (713)
Q Consensus 204 --~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~L~~n---------~ 264 (713)
++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++.++..+... .+.++.+.+..+ .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999999988888777665 9999999999988888766532 356778887633 2
Q ss_pred CcccCCccCcCC--CCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccc
Q 041089 265 LTGFLPQSLSNA--SKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNR 342 (713)
Q Consensus 265 l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 342 (713)
+.+..+..+..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI------ADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE------CTTTTTTCSSCCEEEEESCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC------ChHHhcCCCCCCEEECCCCC
Confidence 333333444443 6899999999999888888899999999999999988763 33456788899999999999
Q ss_pred cccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCc
Q 041089 343 FGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPD 422 (713)
Q Consensus 343 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 422 (713)
+++..|..+..+. +|+.|++++|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|++. .+|.
T Consensus 326 l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp CSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC
T ss_pred CCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc
Confidence 8877777777665 899999999999877777888899999999999988743 23788999999999988 4444
Q ss_pred cccCCCCCCEEEccCCcccccC-ChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCC-----CCCCcc
Q 041089 423 SIGNLTLLNILQLGFNKLQGSI-PSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFS-----GSIPLE 496 (713)
Q Consensus 423 ~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~-----~~~~~~ 496 (713)
. ..+++.|++++|++++.. +..+..+++|++|++++|++.+..+.......+.++.|++++|.++ +..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 3 467889999999988642 2335578999999999999885444433333334458899999886 344566
Q ss_pred ccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCC
Q 041089 497 VGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLE 576 (713)
Q Consensus 497 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 576 (713)
+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+. ++|+.|||++|++++..|..+ .+|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 78888999999999999988888888899999999999999877776665 789999999999998888765 4788
Q ss_pred EEeCCCccCcccCCCC
Q 041089 577 YLNLSYNHFEGEVPKK 592 (713)
Q Consensus 577 ~L~ls~n~l~~~~p~~ 592 (713)
.+++++|++.|.++..
T Consensus 551 ~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 551 VLDITHNKFICECELS 566 (844)
T ss_dssp EEEEEEECCCCSSSCC
T ss_pred EEEecCCCcccccccH
Confidence 9999999998887643
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-53 Score=479.10 Aligned_cols=527 Identities=18% Similarity=0.155 Sum_probs=447.6
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCc
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNN 143 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 143 (713)
.++.++.+++. +|..+. ++|++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 46667777765 344444 899999999999998888899999999999999999998889999999999999999999
Q ss_pred cccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCcc
Q 041089 144 LVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPL 222 (713)
Q Consensus 144 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 222 (713)
+.+..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 999999999999999999999999998887889999999999999999986 6799999999999999999999998888
Q ss_pred cccCCCcce----EEEccCCCCcccCCccccCCCCCCCEEeCCCCcCc-ccCCccCcCCCCCcEEeccCcccccc-----
Q 041089 223 SVCNISSLD----EAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLT-GFLPQSLSNASKLEWLELNENHFSGQ----- 292 (713)
Q Consensus 223 ~~~~l~~L~----~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~----- 292 (713)
.+..+++|+ ++++++|.++ .++...+ ...+|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+.
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 887766654 8999999998 4555555 4458999999999887 45677889999999998876544321
Q ss_pred -cccccCCCC--CCCeEEc-CCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCce
Q 041089 293 -VRINFNSLP--NLSKLYL-GRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQI 368 (713)
Q Consensus 293 -~~~~l~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l 368 (713)
.+..+..+. .++.+++ ..+.+.+ ..+. +..+++|+.|+++++.+. .+| .+... .+++.+++++|.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~-~~L~~L~l~~n~l 319 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSD------DIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKH-FKWQSLSIIRCQL 319 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCG------GGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTT-CCCSEEEEESCCC
T ss_pred cChHHhhhhhhccHhheeccccccccc------cccc-cccCCCCCEEEecCccch-hhh-hcccc-ccCCEEEcccccC
Confidence 112222222 3555666 4455544 2333 788999999999999986 455 45544 4899999999999
Q ss_pred eecCCccccCCCCCCEEeccCCcccccCCcccccccccceeeccccccccc--CCccccCCCCCCEEEccCCcccccCCh
Q 041089 369 SGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGI--IPDSIGNLTLLNILQLGFNKLQGSIPS 446 (713)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 446 (713)
+.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|.+.+ +|.
T Consensus 320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 320 -KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp -SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred -cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 6888 45 9999999999999765544 567899999999999999876 47889999999999999999885 668
Q ss_pred hhhcCCCCcEEeCCCCCCCCCCC-ccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCc-cCcccCcCC
Q 041089 447 YLGKCQNLMQLSAPNNQLNGTLP-PQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSN-EIPVTLSAC 524 (713)
Q Consensus 447 ~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~ 524 (713)
.+..+++|++|++++|++.+..| ..+..+..+ +.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 89999999999999999997777 455566655 499999999999999999999999999999999998 478899999
Q ss_pred CCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC-CCCC-CCCccc
Q 041089 525 TTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK-GVFS-NETRIS 602 (713)
Q Consensus 525 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~-~l~~~~ 602 (713)
++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|++|++++|+++ .+|.. ..++ .++.++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998 45543 3343 589999
Q ss_pred ccCCCCCCCCC
Q 041089 603 LTGNEQLCGGL 613 (713)
Q Consensus 603 ~~~n~~lc~~~ 613 (713)
+.+||+.|++.
T Consensus 552 l~~N~~~c~c~ 562 (606)
T 3vq2_A 552 LTNNSVACICE 562 (606)
T ss_dssp CCSCCCCCSST
T ss_pred ccCCCcccCCc
Confidence 99999999753
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=486.20 Aligned_cols=524 Identities=19% Similarity=0.178 Sum_probs=445.4
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccC-CccccCCCCCcEEEccCC
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKI-PTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n 142 (713)
..|.++++++.. |. -.++|++|||++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 455666777764 33 4589999999999999999999999999999999999766666 788999999999999999
Q ss_pred ccccccchhhcCcCCCCEEeccCccccccCccc--ccCCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEeCCCCcCcCC
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPS--IGNLSALQTFDIAGNKLDGRIP-DSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
.+.+..|..|.++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999866665 9999999999999999987654 5799999999999999999999
Q ss_pred CcccccCC--CcceEEEccCCCCcccCCccccCCCCC------CCEEeCCCCcCcccCCccCcCC---CCCcEEeccCc-
Q 041089 220 FPLSVCNI--SSLDEAYLFKNRFKGSLPVCLGFNLPK------LTVLVVAQNNLTGFLPQSLSNA---SKLEWLELNEN- 287 (713)
Q Consensus 220 ~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n- 287 (713)
.+..+..+ ++|+.|+++.|.+.+..|..+. .+++ |+.|++++|.+++..+..+... .+++.+.+..+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 99988877 8999999999999988887665 4444 9999999999988777766543 67888887733
Q ss_pred --------ccccccccccCCC--CCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhcccc
Q 041089 288 --------HFSGQVRINFNSL--PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTT 357 (713)
Q Consensus 288 --------~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 357 (713)
.+.+.....|..+ ++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+..|..+..+. +
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~ 315 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-N 315 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-S
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccc------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-C
Confidence 3333444445554 789999999999876 3345677899999999999999988887777765 9
Q ss_pred ccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccC
Q 041089 358 MTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGF 437 (713)
Q Consensus 358 L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 437 (713)
|+.|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG 390 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence 99999999999988899999999999999999999988888899999999999999999843 3378999999999
Q ss_pred CcccccCChhhhcCCCCcEEeCCCCCCCCCCC-ccccCcccccchhcccCCcCCCCCCc-cccCCCCCcEEeCCCCcCC-
Q 041089 438 NKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLP-PQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQLDISRNHFS- 514 (713)
Q Consensus 438 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~- 514 (713)
|+++ .+|.. ..+++.|++++|++.+.-. ..+..++.+ +.|++++|++++..+. .+..+++|++|++++|.++
T Consensus 391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 9998 55543 5689999999999984322 123345555 5999999999865443 4566899999999999997
Q ss_pred ----ccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 515 ----NEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 515 ----~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++..|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 44456788999999999999999999999999999999999999999987777766 899999999999999888
Q ss_pred CCCCCCCCCcccccCCCCCCCCC
Q 041089 591 KKGVFSNETRISLTGNEQLCGGL 613 (713)
Q Consensus 591 ~~~~~~~l~~~~~~~n~~lc~~~ 613 (713)
.. +..++.+++.+||+.|++.
T Consensus 544 ~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 544 DV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CC--CSSCCEEEEEEECCCCSSS
T ss_pred hH--hCCcCEEEecCCCcccccc
Confidence 54 6688999999999999653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-50 Score=446.87 Aligned_cols=498 Identities=17% Similarity=0.181 Sum_probs=368.4
Q ss_pred CCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCc
Q 041089 47 LCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPT 126 (713)
Q Consensus 47 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 126 (713)
.|.|.|+ |+. +++.++. +|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4899888 753 3455554 444443 7899999999999988888999999999999999999988888
Q ss_pred cccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCC-ccccCCC
Q 041089 127 NLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIP-DSLGQLR 204 (713)
Q Consensus 127 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 204 (713)
.|.++++|++|++++|.+.+..+..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999986 356789999999999999998554554 6899999
Q ss_pred CCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccC--C-ccCcCCCCCcE
Q 041089 205 NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFL--P-QSLSNASKLEW 281 (713)
Q Consensus 205 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~ 281 (713)
+|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|..+...+++|+.|++++|.+++.. + .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999999999999999999999998875 556555446899999999999988642 1 22345788999
Q ss_pred EeccCccccccccc----ccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhcccc
Q 041089 282 LELNENHFSGQVRI----NFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTT 357 (713)
Q Consensus 282 L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 357 (713)
|++++|.+++..+. .+..+++|+.+++++|.+.+...........+..+++++.+++.++.+..... +
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~------ 299 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--F------ 299 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--S------
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--c------
Confidence 99999988765433 34667889999999888766432222223345566777788777766542110 0
Q ss_pred ccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCccc-ccccccceeecccccccccCC---ccccCCCCCCEE
Q 041089 358 MTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAI-GELRNLQYLGLVGNNIRGIIP---DSIGNLTLLNIL 433 (713)
Q Consensus 358 L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L 433 (713)
..++..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|++.+.+| ..+..+++|++|
T Consensus 300 ------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 300 ------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp ------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 011112233445666666666655 344443 356666666666666665443 235556666666
Q ss_pred EccCCcccccCC--hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCC
Q 041089 434 QLGFNKLQGSIP--SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRN 511 (713)
Q Consensus 434 ~Ls~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n 511 (713)
++++|++++..+ ..+..+++|++|++++|++. .+|..+..+..+ +.|++++|.+++ +|..+ .++|++|++++|
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSC-CCTTS--CTTCSEEECCSS
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCccc-ccchh--cCCceEEECCCC
Confidence 666666654321 34556666666666666666 566555544444 366666666652 33332 258999999999
Q ss_pred cCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCC
Q 041089 512 HFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 512 ~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~ 591 (713)
++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|+|++|++++..|..+..+++|++|++++|++.|.+|.
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 998643 57889999999999998 6675 56789999999999999998888899999999999999999998874
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-50 Score=446.87 Aligned_cols=492 Identities=21% Similarity=0.226 Sum_probs=333.4
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+|++|.+.+..+.+|.++++|++|+|++|++++..|..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46788888888888877778888888888888888888777777888888888888888888777778888888888888
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCC----CEEeCCCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL----NYLGTSEN 214 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n 214 (713)
++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8888877666567888888888888888776 467778888888888888888876666777777777 77888888
Q ss_pred cCcCCCcccccCCCcceEEEccCCCCcc-cCCccccCCCCCCCEEeCCCCcCc------ccCCccCcCCC--CCcEEecc
Q 041089 215 DFSGMFPLSVCNISSLDEAYLFKNRFKG-SLPVCLGFNLPKLTVLVVAQNNLT------GFLPQSLSNAS--KLEWLELN 285 (713)
Q Consensus 215 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~------~~~~~~l~~l~--~L~~L~l~ 285 (713)
.+.+..|..+... +|+.+++++|.... .++..+. .++.++...+....+. ......+..++ .++.+++.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~-~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHH-TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhc-CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 8877766666555 78888887764332 2222232 5555555544322111 11111222222 23444555
Q ss_pred Cc-ccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEcc
Q 041089 286 EN-HFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMA 364 (713)
Q Consensus 286 ~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 364 (713)
++ .+.+..+..+..+++|+.|++++|.+.. ++..+..+ +|+.|++++|.+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-------l~~~~~~~-~L~~L~l~~n~~~-------------------- 317 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNF-GWQHLELVNCKFG-------------------- 317 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECS-------CCBCCSCC-CCSEEEEESCBCS--------------------
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchh-------hhhhhccC-CccEEeeccCccc--------------------
Confidence 44 4445555555556666666666655542 22223333 5555555555444
Q ss_pred CCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccC--CccccCCCCCCEEEccCCcccc
Q 041089 365 GNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGII--PDSIGNLTLLNILQLGFNKLQG 442 (713)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~ 442 (713)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++.+.. +..+..+++|++|++++|.+.+
T Consensus 318 ------~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 318 ------QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp ------SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred ------ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 2232 2344555555555555443333 44555555555555554332 3445555555555555555553
Q ss_pred cCChhhhcCCCCcEEeCCCCCCCCCCCcc-ccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCC-ccCccc
Q 041089 443 SIPSYLGKCQNLMQLSAPNNQLNGTLPPQ-IFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFS-NEIPVT 520 (713)
Q Consensus 443 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~ 520 (713)
..+. +..+++|++|++++|.+.+..|.. +..+..+ +.|++++|.+.+..|..+..+++|++|++++|.++ +.+|..
T Consensus 388 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 388 MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 3222 555555555555555555443322 2233333 35666666666667778888999999999999997 578999
Q ss_pred CcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCC
Q 041089 521 LSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKG 593 (713)
Q Consensus 521 ~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~ 593 (713)
+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++.|.+|...
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999999999999999999999999999999999999888889999999999999999999998653
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-48 Score=434.40 Aligned_cols=511 Identities=19% Similarity=0.201 Sum_probs=393.1
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++-++.++.. +|..+. +++++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3334444443 333332 5789999999999887788899999999999999998877778888889999999998888
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCccc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLS 223 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 223 (713)
.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 88888888888888888888888886665568888888888888888876 46888888888888888888888777766
Q ss_pred ccCCCcc----eEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcc-cCCccCcCCCCCcEEeccCcccccccccccC
Q 041089 224 VCNISSL----DEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTG-FLPQSLSNASKLEWLELNENHFSGQVRINFN 298 (713)
Q Consensus 224 ~~~l~~L----~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 298 (713)
+..+++| +.+++++|.+.+..|..+. ..+|+.|++++|.... .++..+..+++++.+.+....+..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~------- 239 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------- 239 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-------
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccC-------
Confidence 6666665 5666666666544333321 2245556555553221 123334444444444433221110
Q ss_pred CCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeecc-ccccccChhhhhccccccEEEccCCceeecCCcccc
Q 041089 299 SLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFN-RFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIR 377 (713)
Q Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 377 (713)
..+++. +.. .....+..+ .++.+++.++ .+.+..|..+.... +++.+++++|.+. .+|..+.
T Consensus 240 -~~~l~~--~~~-----------~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~ 302 (570)
T 2z63_A 240 -EGNLEK--FDK-----------SALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSY 302 (570)
T ss_dssp -CSSCEE--CCT-----------TTTGGGGGS-EEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCS
T ss_pred -chhhhh--cch-----------hhhcccccc-chhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhc
Confidence 001100 000 011111121 3567777777 66777777777664 8999999999988 6888888
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccC--ChhhhcCCCCc
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSI--PSYLGKCQNLM 455 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~ 455 (713)
.+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|+
T Consensus 303 ~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 303 NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 88 9999999999998 5554 4789999999999998876654 77899999999999998654 77899999999
Q ss_pred EEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCC-ccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcC
Q 041089 456 QLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIP-LEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534 (713)
Q Consensus 456 ~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~ 534 (713)
+|++++|.+.+ +|..+..+..+. .|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 377 ~L~l~~n~l~~-~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 377 YLDLSFNGVIT-MSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEECCSCSEEE-EEEEEETCTTCC-EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcccc-ccccccccCCCC-EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC
Confidence 99999999984 555566666664 99999999998766 5788999999999999999999999999999999999999
Q ss_pred Cccc-ccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC-CCCCCCCcccccCCCCCCCC
Q 041089 535 NSFN-GSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK-GVFSNETRISLTGNEQLCGG 612 (713)
Q Consensus 535 n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~ 612 (713)
|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..++.++.+++.+|+..|..
T Consensus 455 n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9998 679999999999999999999999999999999999999999999999877653 56778999999999998864
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-47 Score=425.05 Aligned_cols=481 Identities=18% Similarity=0.161 Sum_probs=365.3
Q ss_pred CCccccccCCC--CCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCC
Q 041089 48 CQWTGVTCGHR--HQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 48 c~w~gv~c~~~--~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
|++.+++.-+. ..+++.|+|++|.+++..+.+|.++++|++|+|++|++++..|..|+++++|++|++++|.+++..|
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 44555544322 2589999999999999988999999999999999999999888999999999999999999998777
Q ss_pred ccccCCCCCcEEEccCCcccc-ccchhhcCcCCCCEEeccCccccccC-cccccCCCCCcEEEccCCCCCCCCCccccCC
Q 041089 126 TNLSRCFNLIDFWVHTNNLVG-EIQAIIGNWLKLERLSLYDNQLTGQL-RPSIGNLSALQTFDIAGNKLDGRIPDSLGQL 203 (713)
Q Consensus 126 ~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 203 (713)
..|+++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..++.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 779999999999999999987 46778999999999999999854444 4689999999999999999999999999999
Q ss_pred CCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccC--CccccCCCCCCCEEeCCCCcCcccCC----ccCcCCC
Q 041089 204 RNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL--PVCLGFNLPKLTVLVVAQNNLTGFLP----QSLSNAS 277 (713)
Q Consensus 204 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~ 277 (713)
++|++|++++|.+....+..+..+++|++|++++|.+++.. |..+...+++|+.|++++|.+++..+ ..+..++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 99999999999876433333467899999999999998632 33344468899999999999886543 3456788
Q ss_pred CCcEEeccCcccccccc------cccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhh
Q 041089 278 KLEWLELNENHFSGQVR------INFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSI 351 (713)
Q Consensus 278 ~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 351 (713)
+|+.+++++|.+.+... ..+..+++|+.|++.++.+...... ..........+
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~-------------------- 310 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLE-------------------- 310 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHST--------------------
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcc--------------------
Confidence 99999999998876421 2356788999999988876431100 00011111223
Q ss_pred hhccccccEEEccCCceeecCCccc-cCCCCCCEEeccCCcccccCCc---ccccccccceeecccccccccCC--cccc
Q 041089 352 ANLSTTMTLIAMAGNQISGTIPPEI-RNLFNLNGLGLEYNQLTGTIPP---AIGELRNLQYLGLVGNNIRGIIP--DSIG 425 (713)
Q Consensus 352 ~~~~~~L~~l~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~--~~~~ 425 (713)
+++.+++++|.+. .+|..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+.
T Consensus 311 -----~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 311 -----KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp -----TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred -----cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 4555555555544 344443 3566666666666666654432 25566667777777776664322 3456
Q ss_pred CCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcE
Q 041089 426 NLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQ 505 (713)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~ 505 (713)
.+++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+. +.++.|++++|++++.. ..+++|++
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~ 455 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQE 455 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc---CCceEEECCCCChhhhc----ccCChhcE
Confidence 6677777777777766 56666666777777777777765 4444332 23357788888877542 47889999
Q ss_pred EeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCC
Q 041089 506 LDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIP 566 (713)
Q Consensus 506 L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 566 (713)
|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|.+.+..|
T Consensus 456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999998 6776 4678999999999999999999999999999999999999987665
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-46 Score=424.13 Aligned_cols=514 Identities=21% Similarity=0.209 Sum_probs=360.7
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
..+++|||++|.|++..+.+|.++++|++|||++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46788888888888877778888888888888888888777778888888888888888888666667888888888888
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCC----CEEeCCCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL----NYLGTSEN 214 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n 214 (713)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 8888887777778888888888888888865 356777888888888888888887767766655443 35777777
Q ss_pred cCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCc------CcccCCccCcCCCCCcEEeccCcc
Q 041089 215 DFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNN------LTGFLPQSLSNASKLEWLELNENH 288 (713)
Q Consensus 215 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~------l~~~~~~~l~~l~~L~~L~l~~n~ 288 (713)
.+....+..+ ....++.+++.+|.....++......++.++...+..+. +.......+..+..+...++..+.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 7765444333 344567777777765544444333356666665553322 222223334444555555554433
Q ss_pred ccc---ccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccC
Q 041089 289 FSG---QVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAG 365 (713)
Q Consensus 289 l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 365 (713)
... .....+....+++.+.+..+.+.. ...+.....++.|++.++.+.+..+.. ...++.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~ 358 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTS 358 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEE--------CGGGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEES
T ss_pred hcccccchhhhhhhhccccccccccccccc--------ccccccchhhhhhhcccccccCcCccc----chhhhhccccc
Confidence 221 223345556777777777776543 223455667888888887766433322 13677777777
Q ss_pred CceeecCCccccCCCCCCEEeccCCccc--ccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCccccc
Q 041089 366 NQISGTIPPEIRNLFNLNGLGLEYNQLT--GTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGS 443 (713)
Q Consensus 366 n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 443 (713)
|...... ....+++|+.+++++|.+. +..+..+..+.+|+++++..|.... .+..+..+++|+.++++.+.....
T Consensus 359 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 359 NKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 7665432 3456778888888888765 3455666677788888888877763 445677788888888887766544
Q ss_pred CC-hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCC-CCCCccccCCCCCcEEeCCCCcCCccCcccC
Q 041089 444 IP-SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFS-GSIPLEVGNLKSLVQLDISRNHFSNEIPVTL 521 (713)
Q Consensus 444 ~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 521 (713)
.+ ..+..+++++.++++.|.+.+..+..+.....+ +.|++++|.+. +..|..+..+++|++|+|++|++++..|..|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 33 456777888888888888876555555544444 47888887643 3566777888888888888888887778888
Q ss_pred cCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCC-CCCCEEeCCCccCcccCC
Q 041089 522 SACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDL-PFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 522 ~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~p 590 (713)
.++++|++|+|++|++++..|..|..+++|+.|||++|++++..|..+..+ ++|++|++++|++.|.+.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 888888888888888887777788888888888888888888888888777 578888888888887765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=422.04 Aligned_cols=456 Identities=18% Similarity=0.210 Sum_probs=299.1
Q ss_pred EEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 63 TELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 63 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
+.+|++++.++. +|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 357888888875 555555 78888888888888777778888888888888888888777777788888888888887
Q ss_pred ccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCC--CEEeCCCCcC--c
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL--NYLGTSENDF--S 217 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~ 217 (713)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 777 34444 67777777777777776 356777777777777777777764 345555566 7777777766 5
Q ss_pred CCCcccccCCCc-ceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc-------c
Q 041089 218 GMFPLSVCNISS-LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH-------F 289 (713)
Q Consensus 218 ~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------l 289 (713)
+..|..+..+.. ...+++++|.+.+.++.. .+..+++|+.+++++|. +
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~------------------------~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDV------------------------SVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCC------------------------CCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ccccccccccccceEEEEeccCcchhhhhhh------------------------hhhcccceeecccccccccccccee
Confidence 555555555442 223344444444333332 34555666666666654 3
Q ss_pred ccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhh--ccccccEEEccCCc
Q 041089 290 SGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIAN--LSTTMTLIAMAGNQ 367 (713)
Q Consensus 290 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~l~l~~n~ 367 (713)
.+.++ .+..+++|+.|+++.|.+++ ..+..+.. ...+++.+++++|.
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~------------------------------~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTW------------------------------NSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEH------------------------------HHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred ecchh-hhccccchhhccccccccCH------------------------------HHHHHHHHHhhhCcccEEEeeccc
Confidence 33333 34445555555554444332 11111100 01245555555555
Q ss_pred eeecCCccc-----cCCCCCCEEeccCCcccccCC-cccccc---cccceeecccccccccCCccccCCCCCCEEEccCC
Q 041089 368 ISGTIPPEI-----RNLFNLNGLGLEYNQLTGTIP-PAIGEL---RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFN 438 (713)
Q Consensus 368 l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 438 (713)
+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|++|++++|.+.... .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 555555555 5566666666666666 333 333333 45666666666654321 1245666666666666
Q ss_pred cccccCChhhhcCCCCcEEeCCCCCCCC--CCCccccCcccccchhcccCCcCCCCCCc-cccCCCCCcEEeCCCCcCCc
Q 041089 439 KLQGSIPSYLGKCQNLMQLSAPNNQLNG--TLPPQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQLDISRNHFSN 515 (713)
Q Consensus 439 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~ 515 (713)
++++.+|..+..+++|++|++++|++.+ .+|..+..+..+. .|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC-EEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 6666666666666666666666666653 3344444444443 666666666654554 36778899999999999998
Q ss_pred cCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCcc-CCCCCCCCEEeCCCccCcccCCC
Q 041089 516 EIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIH-LQDLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 516 ~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~~p~ 591 (713)
.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++. +|.. +..+++|++|++++|++.|.++.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8887765 79999999999998 788888899999999999999995 5554 88999999999999999987763
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.2e-47 Score=429.93 Aligned_cols=450 Identities=19% Similarity=0.237 Sum_probs=255.4
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeee-cCCCCcccCCccccCCC-CCcE-----E---------E-ccCCcccc
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVL-SNNSFSGKIPTNLSRCF-NLID-----F---------W-VHTNNLVG 146 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~~p~~l~~l~-~L~~-----L---------~-l~~n~~~~ 146 (713)
.+++.|+|++|.+.|.+|..|+++++|++|+| ++|.++|..|....... .+.. + . .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 88888877543311110 0000 0 0 00001111
Q ss_pred ccchhh-----------cCcCCCCEEeccC--ccccccCcccccCCCCCcEEEccCCCCCC-----------------CC
Q 041089 147 EIQAII-----------GNWLKLERLSLYD--NQLTGQLRPSIGNLSALQTFDIAGNKLDG-----------------RI 196 (713)
Q Consensus 147 ~~~~~l-----------~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~ 196 (713)
..+..+ .....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 111111 1122333333333 56665 56666666666666666666665 26
Q ss_pred Ccccc--CCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC-Ccc-cCCcccc------CCCCCCCEEeCCCCcCc
Q 041089 197 PDSLG--QLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR-FKG-SLPVCLG------FNLPKLTVLVVAQNNLT 266 (713)
Q Consensus 197 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~------~~l~~L~~L~L~~n~l~ 266 (713)
|+.++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|. ++| .+|..++ ..+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 66666 77777777777777777777777777777777777776 666 5665443 13347777777777777
Q ss_pred ccCCc--cCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCC-CcEEeeecccc
Q 041089 267 GFLPQ--SLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSK-LVKLGLVFNRF 343 (713)
Q Consensus 267 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~ 343 (713)
.+|. .+.++++|+.|++++|.++ .+| .+..+++|+.|++++|.+.. ++..+..+++ |+.|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCC
Confidence 5666 6777777777777777776 555 67777777777777777652 3344566666 77777777776
Q ss_pred ccccChhhhhcc-ccccEEEccCCceeecCCcc---cc--CCCCCCEEeccCCcccccCCccc-ccccccceeecccccc
Q 041089 344 GGALPHSIANLS-TTMTLIAMAGNQISGTIPPE---IR--NLFNLNGLGLEYNQLTGTIPPAI-GELRNLQYLGLVGNNI 416 (713)
Q Consensus 344 ~~~~~~~~~~~~-~~L~~l~l~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l 416 (713)
+ .+|..+.... .+|+.|++++|.+.+.+|.. +. .+++|+.|++++|.++ .+|..+ ..+++|++|++++|++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 6 4554333221 12444555555444433321 11 1224555555555555 223222 2445555555555554
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCcccc--CcccccchhcccCCcCCCCCC
Q 041089 417 RGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIF--GITPLSKLLDLSENHFSGSIP 494 (713)
Q Consensus 417 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~l~~~l~ls~n~~~~~~~ 494 (713)
. .+|..+.... +..+.+|++|++|++++|++. .+|..++ .++.+ +.|++++|++++ +|
T Consensus 710 ~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 710 T-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FP 769 (876)
T ss_dssp S-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CC
T ss_pred C-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cc
Confidence 4 3332221110 000112235666666666665 5555544 33333 244555555544 45
Q ss_pred ccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCC
Q 041089 495 LEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPF 574 (713)
Q Consensus 495 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 574 (713)
..+..+++|+.|+|++|+ ++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++
T Consensus 770 ~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~ 828 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQ 828 (876)
T ss_dssp CGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SS
T ss_pred hhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CC
Confidence 555666667777776643 3344566666666666666666666666666 45555543 46
Q ss_pred CCEEeCCCccCcc
Q 041089 575 LEYLNLSYNHFEG 587 (713)
Q Consensus 575 L~~L~ls~n~l~~ 587 (713)
|+.||+++|++..
T Consensus 829 L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 829 LYILDIADNPNIS 841 (876)
T ss_dssp SCEEECCSCTTCE
T ss_pred CCEEECCCCCCCc
Confidence 6666666666543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-48 Score=430.48 Aligned_cols=466 Identities=19% Similarity=0.285 Sum_probs=326.0
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEec
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSL 163 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 163 (713)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.+... +..++.. .....+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~-----------~~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPK-----------GISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTT-----------SBCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-Ccccccc-----------ccccCchHHH--HHHHH-hhH
Confidence 5788999999999999999999999999999999976311 1111100 0000122222 33444 555
Q ss_pred cCccccccCcccccC-CCCCcEEEccCCCCCCCCCccccCCCCCCEEeC--CCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 164 YDNQLTGQLRPSIGN-LSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGT--SENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 164 s~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l--~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
+.+.+.+.+|..+.. +..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|++++|.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc
Confidence 555555544444331 1112222222111110 00111111111 1234444 444444444444444444444
Q ss_pred ccc-----------------CCcccc-CCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc-ccc-ccccccCCC
Q 041089 241 KGS-----------------LPVCLG-FNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH-FSG-QVRINFNSL 300 (713)
Q Consensus 241 ~~~-----------------~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l 300 (713)
++. +|..++ .++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 443 555443 145666666666666666666666666666666666666 665 555555444
Q ss_pred ------CCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccCh--hhhhccccccEEEccCCceeecC
Q 041089 301 ------PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPH--SIANLSTTMTLIAMAGNQISGTI 372 (713)
Q Consensus 301 ------~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~ 372 (713)
++|++|++++|.++. +|. .+..+. +|+.|++++|.++|.+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~~-------------------------------ip~~~~l~~l~-~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLKT-------------------------------FPVETSLQKMK-KLGMLECLYNQLEGKL 346 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCSS-------------------------------CCCHHHHTTCT-TCCEEECCSCCCEEEC
T ss_pred hccccCCCCCEEECCCCcCCc-------------------------------cCchhhhccCC-CCCEEeCcCCcCccch
Confidence 666666666665542 222 222222 5666666666666677
Q ss_pred CccccCCCCCCEEeccCCcccccCCcccccccc-cceeecccccccccCCccccCCC--CCCEEEccCCcccccCChhhh
Q 041089 373 PPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRN-LQYLGLVGNNIRGIIPDSIGNLT--LLNILQLGFNKLQGSIPSYLG 449 (713)
Q Consensus 373 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~ 449 (713)
| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|.+++.+|..+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 7 7888899999999999999 78888999999 999999999999 7888877655 899999999999999998888
Q ss_pred -------cCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccc-cCC-------CCCcEEeCCCCcCC
Q 041089 450 -------KCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEV-GNL-------KSLVQLDISRNHFS 514 (713)
Q Consensus 450 -------~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~-~~l-------~~L~~L~Ls~n~l~ 514 (713)
.+++|++|++++|++. .+|..++...+.++.|++++|+++ .+|..+ ... ++|++|++++|+++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence 7889999999999999 788887764444459999999999 555543 322 38999999999999
Q ss_pred ccCcccCc--CCCCCceeeCcCCcccccCCcccccCCCCCEEeC------CCCcccccCCccCCCCCCCCEEeCCCccCc
Q 041089 515 NEIPVTLS--ACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDL------SCNNLSGQIPIHLQDLPFLEYLNLSYNHFE 586 (713)
Q Consensus 515 ~~~p~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~n~l~ 586 (713)
.+|..+. .+++|+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|++|++++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 7888886 99999999999999997 8999999999999999 56888999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccccCCCCCCCC
Q 041089 587 GEVPKKGVFSNETRISLTGNEQLCGG 612 (713)
Q Consensus 587 ~~~p~~~~~~~l~~~~~~~n~~lc~~ 612 (713)
+.+|.. ..+.++.+++.+|+..|-.
T Consensus 579 ~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 579 RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CccCHh-HhCcCCEEECcCCCCcccc
Confidence 788876 3478999999999988744
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-45 Score=414.37 Aligned_cols=526 Identities=18% Similarity=0.153 Sum_probs=415.3
Q ss_pred CCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccc
Q 041089 70 QNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQ 149 (713)
Q Consensus 70 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 149 (713)
.+++. +|..+. +.+++|||++|++++..|.+|.++++|++|||++|++++..|..|.++++|++|+|++|++++..+
T Consensus 41 ~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 34443 444432 479999999999998888899999999999999999998878889999999999999999998888
Q ss_pred hhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCcccccCCC
Q 041089 150 AIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNIS 228 (713)
Q Consensus 150 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 228 (713)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 899999999999999999998877889999999999999999975 4688899999999999999999988888776554
Q ss_pred c----ceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcc-cCCccCcCCCCCcEEeccCccc------cccccccc
Q 041089 229 S----LDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTG-FLPQSLSNASKLEWLELNENHF------SGQVRINF 297 (713)
Q Consensus 229 ~----L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l------~~~~~~~l 297 (713)
+ ...++++.|.+.. ++...+ ....++.+++.+|.... ..+..+..+..++...+..+.. .......+
T Consensus 198 ~l~~~~~~~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp TCTTCCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 4 3468888888874 444333 34556778887776543 2334566777777766654322 22223334
Q ss_pred CCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCcccc
Q 041089 298 NSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIR 377 (713)
Q Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 377 (713)
.....+....+..+...... ......+....+++.+.+..+.+....+ +. ....++.+++.+|.+....+ .
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~---~ 346 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYL---DGIIDLFNCLTNVSSFSLVSVTIERVKD--FS-YNFGWQHLELVNCKFGQFPT---L 346 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCE---EECTTTTGGGTTCSEEEEESCEEEECGG--GG-SCCCCSEEEEESCEESSCCC---C
T ss_pred ccccchhhhhhhhhhhcccc---cchhhhhhhhcccccccccccccccccc--cc-cchhhhhhhcccccccCcCc---c
Confidence 44455555555443322111 0223345566788888888887764322 22 22478999999998875443 3
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccc--cCCccccCCCCCCEEEccCCcccccCChhhhcCCCCc
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRG--IIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLM 455 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 455 (713)
.+..|+.+++..|...... ....+++|++|++++|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~ 423 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLE 423 (635)
T ss_dssp BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCC
T ss_pred cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccccc
Confidence 4678899999998876443 34578999999999998853 455667788999999999998874 455678899999
Q ss_pred EEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcC-CccCcccCcCCCCCceeeCcC
Q 041089 456 QLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHF-SNEIPVTLSACTTLEYLLMQG 534 (713)
Q Consensus 456 ~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~~~~L~~L~ls~ 534 (713)
.+++..+......+...+......+.++++.|.+.+..+..+..++.|++|++++|.+ .+..|..|..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 9999999887666665555444456899999999999999999999999999999975 445788999999999999999
Q ss_pred CcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC-CC-CCCCCcccccCCCCCCCC
Q 041089 535 NSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK-GV-FSNETRISLTGNEQLCGG 612 (713)
Q Consensus 535 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~-~~~l~~~~~~~n~~lc~~ 612 (713)
|++++..|..|.++++|+.|+|++|++++..|..|..+++|++||+++|++++..|.. .. +.+++.+++.+||+.|++
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999988865 22 367899999999999975
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-45 Score=402.97 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=322.1
Q ss_pred CEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCc
Q 041089 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN 166 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 166 (713)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46777777777 5665554 67777777777777655566667777777777777766666666666666666666666
Q ss_pred cccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCC
Q 041089 167 QLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLP 245 (713)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 245 (713)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++|
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L--------------- 138 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL--------------- 138 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS---------------
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc---------------
Confidence 666 34443 56666666666666654 345566666666666666665543 122223333
Q ss_pred ccccCCCCCCCEEeCCCCcC--cccCCccCcCCC-CCcEEeccCccccccccc-ccCCCCCCCeEEcCCCcccCcCCCCc
Q 041089 246 VCLGFNLPKLTVLVVAQNNL--TGFLPQSLSNAS-KLEWLELNENHFSGQVRI-NFNSLPNLSKLYLGRNNLGTRTSTDL 321 (713)
Q Consensus 246 ~~~~~~l~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (713)
+|+.|++++|.+ .+..|..+..+. ....+++++|.+.+..+. .+..++
T Consensus 139 --------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-------------------- 190 (520)
T 2z7x_B 139 --------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA-------------------- 190 (520)
T ss_dssp --------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS--------------------
T ss_pred --------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc--------------------
Confidence 014444444444 344444444433 222345555555443332 234444
Q ss_pred cccccccCCCCCcEEeeeccc-------cccccChhhhhccccccEEEccCCceeecCCcccc---CCCCCCEEeccCCc
Q 041089 322 DFITLLTNCSKLVKLGLVFNR-------FGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIR---NLFNLNGLGLEYNQ 391 (713)
Q Consensus 322 ~~~~~l~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~ 391 (713)
+|+.+++++|. +.+.+| .+... ++++.+++++|.+++..+..+. ..++|++|++++|.
T Consensus 191 ----------~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 191 ----------NLELSNIKCVLEDNKCSYFLSILA-KLQTN-PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp ----------EEEECCEEECCSTTTTHHHHHHHH-GGGGC-TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred ----------ceeeccccccccccccceeecchh-hhccc-cchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 44555555443 333333 33343 3788888888777754332221 24689999999999
Q ss_pred ccccCCccc-----ccccccceeecccccccccCC-ccccCC---CCCCEEEccCCcccccCChhhhcCCCCcEEeCCCC
Q 041089 392 LTGTIPPAI-----GELRNLQYLGLVGNNIRGIIP-DSIGNL---TLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNN 462 (713)
Q Consensus 392 l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n 462 (713)
++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 999999988 8999999999999998 455 444444 68999999999987432 1267899999999999
Q ss_pred CCCCCCCccccCcccccchhcccCCcCCC--CCCccccCCCCCcEEeCCCCcCCccCcc-cCcCCCCCceeeCcCCcccc
Q 041089 463 QLNGTLPPQIFGITPLSKLLDLSENHFSG--SIPLEVGNLKSLVQLDISRNHFSNEIPV-TLSACTTLEYLLMQGNSFNG 539 (713)
Q Consensus 463 ~l~~~~~~~~~~~~~l~~~l~ls~n~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~ls~n~l~~ 539 (713)
++.+.+|..+..+..+. .|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++
T Consensus 335 ~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCCTTTTTTCCCCSSCC-EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ccChhhhhhhccCCCCC-EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 99988998888887775 99999999997 5667899999999999999999985665 48889999999999999998
Q ss_pred cCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC--CCCCCCCcccccCCCCCCCC
Q 041089 540 SIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK--GVFSNETRISLTGNEQLCGG 612 (713)
Q Consensus 540 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~ 612 (713)
.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++.. +|.. ..++.++.+++.+||..|.+
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence 8887664 79999999999999 788888899999999999999984 5553 45678899999999998853
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-43 Score=392.78 Aligned_cols=467 Identities=19% Similarity=0.228 Sum_probs=324.3
Q ss_pred CCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEE
Q 041089 82 NLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERL 161 (713)
Q Consensus 82 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 161 (713)
.+...+++|+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3444589999999998 4777654 799999999999997777889999999999999999998888899999999999
Q ss_pred eccCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 162 SLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 162 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
++++|.++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+.+.....+.++ +|++|++++|.+
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 99999998 55655 78999999999999886 456789999999999999988876433333333 338888887777
Q ss_pred --cccCCccccCCCC-CCCEEeCCCCcCcccCCc-cCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCc
Q 041089 241 --KGSLPVCLGFNLP-KLTVLVVAQNNLTGFLPQ-SLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTR 316 (713)
Q Consensus 241 --~~~~p~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 316 (713)
++..|..+. .+. ..-.++++.|.+.+.++. .+..+++|+.+++++|..... .+.
T Consensus 182 ~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~-- 239 (562)
T 3a79_B 182 HIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLM-- 239 (562)
T ss_dssp CCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHH--
T ss_pred cccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHH--
Confidence 655555443 222 111345555555443332 234445555555555431000 000
Q ss_pred CCCCccccccccCCCCCcEEeeeccccccccChhhhh--ccccccEEEccCCceeecCCccc-----cCCCCCCEEeccC
Q 041089 317 TSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIAN--LSTTMTLIAMAGNQISGTIPPEI-----RNLFNLNGLGLEY 389 (713)
Q Consensus 317 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~ 389 (713)
.....+..++.|+.+++.++.+.+.....+.. ...++++|++++|.+++.+|..+ ..++.|+.++++.
T Consensus 240 -----~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 240 -----TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp -----HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred -----HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 11223444455555555555444322111111 01267777777777777777665 5555555555555
Q ss_pred CcccccCC-ccccc---ccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCC
Q 041089 390 NQLTGTIP-PAIGE---LRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLN 465 (713)
Q Consensus 390 n~l~~~~~-~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 465 (713)
+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|++.
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 555 333 22222 256888888888765321 1256778888888888888777777888888888888888877
Q ss_pred C--CCCccccCcccccchhcccCCcCCCCCCc-cccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCC
Q 041089 466 G--TLPPQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIP 542 (713)
Q Consensus 466 ~--~~~~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~ 542 (713)
+ .+|..+..+..+. .|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|
T Consensus 391 ~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 391 NFFKVALMTKNMSSLE-TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp BTTHHHHTTTTCTTCC-EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred CcccchhhhcCCCCCC-EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 4 2234455555553 788888888774554 477889999999999999988777664 78999999999998 677
Q ss_pred cccccCCCCCEEeCCCCcccccCCcc-CCCCCCCCEEeCCCccCcccCCC
Q 041089 543 QSLNALKSIKELDLSCNNLSGQIPIH-LQDLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 543 ~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~~p~ 591 (713)
..+..+++|+.|+|++|++++ +|.. +..+++|++|++++|++.|.+|.
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 777799999999999999994 5555 89999999999999999988774
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-43 Score=393.69 Aligned_cols=463 Identities=17% Similarity=0.155 Sum_probs=320.0
Q ss_pred EEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 63 TELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 63 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
+.+|++++++++ +|..+. ++|++|+|++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999997 566554 89999999999999888899999999999999999999888999999999999999999
Q ss_pred ccccccchhhcCcCCCCEEeccCccccc-cCcccccCCCCCcEEEccCCCCCCCCCccccCCCCC--CEEeCCCCcC--c
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTG-QLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL--NYLGTSENDF--S 217 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~ 217 (713)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 45655 89999999999999997 3568999999999999999999853 44555555 9999999999 8
Q ss_pred CCCcccccCCC-cceEEEccCCCCcccCCccccCCCCCCCEEeCCCCc-----CcccCCccCcCCCCCcEEeccCccccc
Q 041089 218 GMFPLSVCNIS-SLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNN-----LTGFLPQSLSNASKLEWLELNENHFSG 291 (713)
Q Consensus 218 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~l~~n~l~~ 291 (713)
+..|..+..+. ..-.++++.|.+.+.++......+++|+.+++++|. +.+. ...+..+++|+.+++.++.+.+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcH
Confidence 88888887765 222568889998888887777788999999999985 2222 2356777888888888776654
Q ss_pred ccccc---cCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccCh-hhhhccccccEEEccCCc
Q 041089 292 QVRIN---FNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPH-SIANLSTTMTLIAMAGNQ 367 (713)
Q Consensus 292 ~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~ 367 (713)
..... ....++|++|++++|.+.+..+..+ +......++.|+.+++..+.+ .+|. .+...
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~-~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~------------- 327 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-FTYSETALKSLMIEHVKNQVF--LFSKEALYSV------------- 327 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC-CCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH-------------
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchh-hhcccccchheehhhccccee--ecChhhhhhh-------------
Confidence 31111 1122467777777776654211100 000013444444555554444 3332 11111
Q ss_pred eeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccc--cCC
Q 041089 368 ISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQG--SIP 445 (713)
Q Consensus 368 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~ 445 (713)
....+|++|++++|.+.... ....+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|
T Consensus 328 ---------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 328 ---------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp ---------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred ---------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 01134555555555443211 01344555555555555555555555555555555555555553 223
Q ss_pred hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCC
Q 041089 446 SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACT 525 (713)
Q Consensus 446 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 525 (713)
..+..+++|++|++++|++.+.+|...+...+.++.|++++|++++..|..+. ++|++|++++|+++ .+|..+..++
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~ 473 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ 473 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC
Confidence 34555555555555555555445544333323334566666666555554443 68999999999998 6777777899
Q ss_pred CCceeeCcCCcccccCCcc-cccCCCCCEEeCCCCcccccCC
Q 041089 526 TLEYLLMQGNSFNGSIPQS-LNALKSIKELDLSCNNLSGQIP 566 (713)
Q Consensus 526 ~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p 566 (713)
+|++|++++|++++ +|.. +..+++|+.|++++|.+.+..+
T Consensus 474 ~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 474 ALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999999999994 5554 8899999999999999987544
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-43 Score=357.67 Aligned_cols=293 Identities=27% Similarity=0.436 Sum_probs=269.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ccccccCCCC--CcEEEEECCCCCcce--ecCccccCCCCCCE
Q 041089 15 DSNEMDRLALLAIKSQLQDPLGVTKSWNNSINLCQ--WTGVTCGHRH--QRVTELDLESQNIGG--FLSPYIGNLSFLRV 88 (713)
Q Consensus 15 ~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~ 88 (713)
.|.++|++||++||+++.||. .+.+|..+.+||. |.||.|+... ++|++|+|+++.+.+ .+|+.+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 477899999999999998886 7899988889998 9999998654 799999999999999 89999999999999
Q ss_pred EECCC-CCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCcc
Q 041089 89 INLAN-NRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQ 167 (713)
Q Consensus 89 L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 167 (713)
|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCC-CCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCc
Q 041089 168 LTGQLRPSIGNLS-ALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPV 246 (713)
Q Consensus 168 l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 246 (713)
+++.+|..+..++ +|++|++++|.+++.+|..+..+. |++|++++|.+.+..|..+..+++|+.|++++|.+++.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9999999999998 999999999999999999999987 99999999999999999999999999999999999877666
Q ss_pred cccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCc
Q 041089 247 CLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNN 312 (713)
Q Consensus 247 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 312 (713)
+. .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 240 -~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 33 7889999999999999888999999999999999999998888765 777888888888776
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-41 Score=361.66 Aligned_cols=422 Identities=21% Similarity=0.284 Sum_probs=213.6
Q ss_pred ccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCC
Q 041089 78 PYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLK 157 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 157 (713)
+.-.+.++|++|++++|.+ |.+|.+++++++|++|++++|.+.|.+|..++++.+|+.+++..|.. .+
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~ 72 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQ 72 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HT
T ss_pred ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cC
Confidence 3334568889999999988 68898899999999999999998888898888888776666655432 45
Q ss_pred CCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccC
Q 041089 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237 (713)
Q Consensus 158 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 237 (713)
+++|++++|.+++ +|.. .++|++|++++|.+++ +|+. .++|++|++++|.+.+. |.. .++|++|++++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCS
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcC
Confidence 6777777777764 2321 3567777777777764 5543 25667777777666542 111 14555666666
Q ss_pred CCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcC
Q 041089 238 NRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRT 317 (713)
Q Consensus 238 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 317 (713)
|.+++ +| .+. .+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 141 n~l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-- 209 (454)
T 1jl5_A 141 NQLEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-- 209 (454)
T ss_dssp SCCSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--
T ss_pred CCCCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc--
Confidence 55553 55 232 55556666666665553 33322 355666666665554 23 35555555555555555433
Q ss_pred CCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCC
Q 041089 318 STDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIP 397 (713)
Q Consensus 318 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 397 (713)
+|.. ..+|+.|++++|.++ .+| .++.+++|++|++++|.+++ +|
T Consensus 210 -----------------------------l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 210 -----------------------------LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp -----------------------------CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred -----------------------------CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cc
Confidence 1111 125666666666666 455 36677777888888777774 33
Q ss_pred cccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCccc
Q 041089 398 PAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITP 477 (713)
Q Consensus 398 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 477 (713)
.. +++|++|++++|++.+ +|.. +++|++|++++|++++. |. ..++|++|++++|++.+ ++ ..+.
T Consensus 254 ~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~ 317 (454)
T 1jl5_A 254 DL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPP 317 (454)
T ss_dssp SC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCT
T ss_pred cc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcC
Confidence 32 3677788888777775 4432 36777888888777752 11 12577777777777763 22 2222
Q ss_pred ccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccc--cCCcccccCCCCCEEe
Q 041089 478 LSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNG--SIPQSLNALKSIKELD 555 (713)
Q Consensus 478 l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~ 555 (713)
.++.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------- 382 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------- 382 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE-------
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh-------
Confidence 33467777777775 4433 467778888888777 3555 36778888888888776 566554332
Q ss_pred CCCCcccccCCccCCCCCCCCEEeCCCccCcc--cCCCCCCCCCCCcccccCCCCCC
Q 041089 556 LSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG--EVPKKGVFSNETRISLTGNEQLC 610 (713)
Q Consensus 556 Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~~~l~~~~~~~n~~lc 610 (713)
+.|.+.+.+|.. +++|++|++++|++++ .+|. .++.+.+.+|...|
T Consensus 383 -~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 383 -RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVD 430 (454)
T ss_dssp -ECCC----------------------------------------------------
T ss_pred -hhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCC
Confidence 345566666653 4678888888888887 5553 34555565554333
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-40 Score=355.70 Aligned_cols=378 Identities=20% Similarity=0.195 Sum_probs=232.8
Q ss_pred CCCccc--cccCCCC--------CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccC-chhhhccCCCCeeee
Q 041089 47 LCQWTG--VTCGHRH--------QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQI-PKEVGRLFRLETIVL 115 (713)
Q Consensus 47 ~c~w~g--v~c~~~~--------~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L 115 (713)
.|.|.+ |.|+... .+++.|+|++|.+.+..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 355554 6665421 35666666666666666666666666666666666665433 445666666666666
Q ss_pred cCCCCcccCCccccCCCCCcEEEccCCccccccchh--hcCcCCCCEEeccCccccccCccc-ccCCCCCcEEEccCCCC
Q 041089 116 SNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAI--IGNWLKLERLSLYDNQLTGQLRPS-IGNLSALQTFDIAGNKL 192 (713)
Q Consensus 116 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l 192 (713)
++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 666666666666666666666666666666544443 666666666666666666555544 56666666666666666
Q ss_pred CCCCCccccCC--CCCCEEeCCCCcCcCCCccc--------ccCCCcceEEEccCCCCcccCCccccC--CCCCCCEEeC
Q 041089 193 DGRIPDSLGQL--RNLNYLGTSENDFSGMFPLS--------VCNISSLDEAYLFKNRFKGSLPVCLGF--NLPKLTVLVV 260 (713)
Q Consensus 193 ~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~L 260 (713)
++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+.. ..++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66555555544 45666666666655443322 223455555555555555544443321 1244555555
Q ss_pred CCCcCcccCCccCcCCCCCcEEeccCcccccccccccCC--CCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEee
Q 041089 261 AQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNS--LPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGL 338 (713)
Q Consensus 261 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l 338 (713)
++|...+... ..+.+.+..+..+.. .++|+.|++++|.+.+
T Consensus 247 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------------------- 289 (455)
T 3v47_A 247 SNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----------------------- 289 (455)
T ss_dssp TTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-----------------------
T ss_pred cccccccccc--------------chhhhccCcccccccccccCceEEEecCccccc-----------------------
Confidence 5444332110 001111111111211 2345555555554433
Q ss_pred eccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccc
Q 041089 339 VFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRG 418 (713)
Q Consensus 339 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 418 (713)
..|..+..+. +|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 290 -------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 290 -------LLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp -------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred -------cchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 3333333332 56666666666666666777788888888888888887777888888888888888888887
Q ss_pred cCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCC
Q 041089 419 IIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLP 469 (713)
Q Consensus 419 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 469 (713)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 778888888888888888888887666667788888888888888887766
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-39 Score=348.13 Aligned_cols=391 Identities=18% Similarity=0.137 Sum_probs=256.3
Q ss_pred CEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCC-cccccCCCcceEEEccC
Q 041089 159 ERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMF-PLSVCNISSLDEAYLFK 237 (713)
Q Consensus 159 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~ 237 (713)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..+.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777766 4454 2 267888888888887777777888888888888888776544 44567777777777777
Q ss_pred CCCcccCCccccCCCCCCCEEeCCCCcCcccCCcc--CcCCCCCcEEeccCcccccccccc-cCCCCCCCeEEcCCCccc
Q 041089 238 NRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQS--LSNASKLEWLELNENHFSGQVRIN-FNSLPNLSKLYLGRNNLG 314 (713)
Q Consensus 238 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~ 314 (713)
|.+++..|..+. ++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 777755565555 6777777777777776544433 666777777777777776665554 566667777777766665
Q ss_pred CcCCCCccccccccCC--CCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcc
Q 041089 315 TRTSTDLDFITLLTNC--SKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQL 392 (713)
Q Consensus 315 ~~~~~~~~~~~~l~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 392 (713)
+.... .+..+ .+|+.+++++|.+.+..+.++... ....+..+++|++|++++|.+
T Consensus 168 ~~~~~------~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 SICEE------DLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCTT------TSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCC
T ss_pred ccChh------hhhccccccccccccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcc
Confidence 43221 11111 334444444444432221111000 001123456677777777777
Q ss_pred cccCCcccccc---cccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhc--CCCCcEEeCCCCCCCCC
Q 041089 393 TGTIPPAIGEL---RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGK--CQNLMQLSAPNNQLNGT 467 (713)
Q Consensus 393 ~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~ 467 (713)
++..|..+... ++|+.|++++|...+.... .+.+.+..+..+.. .++|++|++++|++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcccccc
Confidence 76666555443 6677777777655432110 00111111111111 23455555555555444
Q ss_pred CCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCccccc
Q 041089 468 LPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNA 547 (713)
Q Consensus 468 ~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 547 (713)
.|..+..+..+. .|++++|++.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..
T Consensus 291 ~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLE-QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCCCC-EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 444444443332 5555555555566677888999999999999999888899999999999999999999999999999
Q ss_pred CCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC
Q 041089 548 LKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK 592 (713)
Q Consensus 548 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 592 (713)
+++|+.|++++|++++..+..+..+++|++|++++|++.|.+|..
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999999999877778899999999999999999999854
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-39 Score=345.54 Aligned_cols=410 Identities=23% Similarity=0.291 Sum_probs=183.8
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCC-------------CeeeecCCCCcccCCc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRL-------------ETIVLSNNSFSGKIPT 126 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~p~ 126 (713)
.++++|+++++.+ |.+|++++++++|++|++++|++.|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 6789999999999 8899999999999999999999999999999998876 667777766663 333
Q ss_pred cccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCC
Q 041089 127 NLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNL 206 (713)
Q Consensus 127 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 206 (713)
. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| +++++++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 1 2566666666666665 4432 2566666666666653 2211 1466666666666663 45 36666666
Q ss_pred CEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccC
Q 041089 207 NYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNE 286 (713)
Q Consensus 207 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 286 (713)
++|++++|.+.+ +|..+ .+|++|++++|.+++ +| .+. .+++|+.|++++|.+++ +|.. .++|++|++++
T Consensus 156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 666666666654 33322 355666666665553 44 232 55566666666665554 2221 13555666665
Q ss_pred cccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCC
Q 041089 287 NHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGN 366 (713)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 366 (713)
|.++ .+| .+..+++|++|++++|.+++. |.. ..+++.|++++|
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-------------------------------~~~----~~~L~~L~l~~N 267 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKTL-------------------------------PDL----PPSLEALNVRDN 267 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSSC-------------------------------CSC----CTTCCEEECCSS
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCcc-------------------------------ccc----ccccCEEECCCC
Confidence 5555 233 255555555555555555432 211 124555555555
Q ss_pred ceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCC-CCCCEEEccCCcccccCC
Q 041089 367 QISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNL-TLLNILQLGFNKLQGSIP 445 (713)
Q Consensus 367 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~ 445 (713)
.+++ +|.. .++|++|++++|.+++. |. ..++|++|++++|++++. + .+ ++|++|++++|++++ +|
T Consensus 268 ~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 268 YLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CC
T ss_pred cccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cc
Confidence 5443 2322 24555666666555541 11 014555666666655531 1 12 356666666666553 33
Q ss_pred hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCC--CCCccccCCCCCcEEeCCCCcCCccCcccCcC
Q 041089 446 SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSG--SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSA 523 (713)
Q Consensus 446 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 523 (713)
.. +++|++|++++|+++ .+|. .+ ..++.|++++|++++ .+|..+.. ++.|.+.+.+|..
T Consensus 334 ~~---~~~L~~L~L~~N~l~-~lp~---~l-~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~--- 394 (454)
T 1jl5_A 334 AL---PPRLERLIASFNHLA-EVPE---LP-QNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL--- 394 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-CCCC---CC-TTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------
T ss_pred cc---CCcCCEEECCCCccc-cccc---hh-hhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---
Confidence 32 355666666666665 4544 11 222356666666655 44443332 2235555555543
Q ss_pred CCCCceeeCcCCcccc--cCCcccccCCCCCEEeCCCCcccccCCccCCC
Q 041089 524 CTTLEYLLMQGNSFNG--SIPQSLNALKSIKELDLSCNNLSGQIPIHLQD 571 (713)
Q Consensus 524 ~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 571 (713)
+++|++|++++|.+++ .+|. +++.|.+.+|.+.+.++.+...
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp --------------------------------------------------
T ss_pred cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 4667777777777776 4553 4556667777777666655443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-37 Score=330.13 Aligned_cols=190 Identities=20% Similarity=0.210 Sum_probs=109.0
Q ss_pred ccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCC
Q 041089 78 PYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLK 157 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 157 (713)
..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++++++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 456677777777777777775 34 577777777777777777753 3 66667777777777766653 2 566666
Q ss_pred CCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccC
Q 041089 158 LERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFK 237 (713)
Q Consensus 158 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 237 (713)
|++|++++|.+++. + ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 66777766666642 2 66666666666666666642 2556666666666666444333 234444444444444
Q ss_pred CCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccc
Q 041089 238 NRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFS 290 (713)
Q Consensus 238 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 290 (713)
|.+++ +| +. .+++|+.|++++|.+++. .+..+++|+.|++++|+++
T Consensus 180 n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 180 NKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp SCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred Cccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence 44442 22 11 344444444444444432 1333444444444444443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.6e-37 Score=326.96 Aligned_cols=364 Identities=21% Similarity=0.205 Sum_probs=209.6
Q ss_pred CCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCccc
Q 041089 96 FHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPS 175 (713)
Q Consensus 96 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 175 (713)
..+..+..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3344556788888888888888888853 5 678888888888888887764 3 77778888888888887754 2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCC
Q 041089 176 IGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKL 255 (713)
Q Consensus 176 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 255 (713)
++++++|++|++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.++ +. .+++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L 172 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VT-PQTQL 172 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CT-TCTTC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--cc-cCCcC
Confidence 7777888888888887775 33 77777777777777777763 25556666666666664443442 11 44555
Q ss_pred CEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcE
Q 041089 256 TVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVK 335 (713)
Q Consensus 256 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 335 (713)
+.|++++|++++. | +..+++|+.|++++|.+++. .+..+++|+.|++++|.++
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~--------------------- 225 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT--------------------- 225 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS---------------------
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc---------------------
Confidence 5555555555542 2 44444555555555544432 1333344444444333332
Q ss_pred EeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeeccccc
Q 041089 336 LGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNN 415 (713)
Q Consensus 336 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 415 (713)
+ +| +..+++|+.|++++|.+++.. ++.+++|+.|++++|
T Consensus 226 ----------------------------------~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n- 264 (457)
T 3bz5_A 226 ----------------------------------E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT- 264 (457)
T ss_dssp ----------------------------------C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-
T ss_pred ----------------------------------c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-
Confidence 2 22 334445555555555555432 233444555554433
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCc
Q 041089 416 IRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPL 495 (713)
Q Consensus 416 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~ 495 (713)
+|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.... .+ +.++++
T Consensus 265 -------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~---~L-~~L~l~---------- 315 (457)
T 3bz5_A 265 -------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA---GI-TELDLS---------- 315 (457)
T ss_dssp -------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC---CC-SCCCCT----------
T ss_pred -------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC---cc-eEechh----------
Confidence 23344555555444444 34455555555555555544443211 11 122222
Q ss_pred cccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCC
Q 041089 496 EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFL 575 (713)
Q Consensus 496 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 575 (713)
.+++|++|++++|++++. + +..+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|
T Consensus 316 ---~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 316 ---QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp ---TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred ---hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 235666677777766653 2 6666677777777776664 23455556666666654 233445
Q ss_pred CEEeCCCccCcccCCCC
Q 041089 576 EYLNLSYNHFEGEVPKK 592 (713)
Q Consensus 576 ~~L~ls~n~l~~~~p~~ 592 (713)
+.+++++|+++|.+|..
T Consensus 377 ~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCBCCBTTBEEEECCTT
T ss_pred CccccccCcEEEEcChh
Confidence 66677777777776643
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=319.42 Aligned_cols=191 Identities=26% Similarity=0.391 Sum_probs=107.4
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..+++|+.|+++++.+. .+| .+..+++|++|++++|.+++..| +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34677888888888776 354 37777888888888887774433 6677777777777776665544 666666666
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+..+ +.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~--~~--------------- 174 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP--LA--------------- 174 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG--GT---------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh--hc---------------
Confidence 6666666664322 5666666666666666553 22 35555555555553 22221111 22
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcc
Q 041089 241 KGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNL 313 (713)
Q Consensus 241 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 313 (713)
.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 175 ----------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 175 ----------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp ----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ----------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 444455555555544432 224455555555555555544333 33444444444444433
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=328.57 Aligned_cols=346 Identities=23% Similarity=0.238 Sum_probs=252.3
Q ss_pred EEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 232 EAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 232 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
.++.+++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4555555554 556543 256778888888888777777888888888888888887777777788888888888877
Q ss_pred cccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCc
Q 041089 312 NLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQ 391 (713)
Q Consensus 312 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 391 (713)
.++.... ..+..+++| ++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 91 ~l~~~~~------~~~~~l~~L-------------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 91 RLKLIPL------GVFTGLSNL-------------------------TKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp CCCSCCT------TSSTTCTTC-------------------------CEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred cCCccCc------ccccCCCCC-------------------------CEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 7664221 123344444 444444444444455556666677777777777
Q ss_pred ccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCcc
Q 041089 392 LTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQ 471 (713)
Q Consensus 392 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 471 (713)
+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 66666666667777777777777766555555666777777777777776666666667777777777777666666666
Q ss_pred ccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCC
Q 041089 472 IFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSI 551 (713)
Q Consensus 472 ~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 551 (713)
.+....+ +.|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|
T Consensus 220 ~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 220 CLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred cccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 5555544 377788887775444678889999999999999998888889999999999999999999999999999999
Q ss_pred CEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCCCCCCCCcccccCCCCCCCCC
Q 041089 552 KELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLCGGL 613 (713)
Q Consensus 552 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 613 (713)
+.|+|++|++++..+..|..+++|++|++++|++.+.++..+.+.......+.++...|..+
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 99999999999887788899999999999999999887654434444455667777778653
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-35 Score=319.15 Aligned_cols=344 Identities=27% Similarity=0.398 Sum_probs=264.7
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+++++.+... +.+..+++|++|+|++|.+.+..| +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 4689999999998863 358999999999999999985544 9999999999999999996554 999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
++|.+.+..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ |.+.+. + .+.++++|++|++++|.+.+.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC
Confidence 9999987654 89999999999999999853 3 58999999999997 455533 2 389999999999999998764
Q ss_pred CcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCC
Q 041089 220 FPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNS 299 (713)
Q Consensus 220 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 299 (713)
..+..+++|++|++++|.+.+..| +. .+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred --hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 347788888888888888875544 22 678888888888887753 457777888888888888776554 677
Q ss_pred CCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCC
Q 041089 300 LPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNL 379 (713)
Q Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l 379 (713)
+++|+.|++++|.+.+.. .+..+++|+.|++++|+ +.+..+ +..+
T Consensus 264 l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~-------------------------l~~~~~--~~~l 308 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQ-------------------------LEDISP--ISNL 308 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSC-------------------------CSCCGG--GGGC
T ss_pred CCCCCEEECCCCccCccc--------cccCCCccCeEEcCCCc-------------------------ccCchh--hcCC
Confidence 777788887777765421 13444555555555444 443222 5667
Q ss_pred CCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeC
Q 041089 380 FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSA 459 (713)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l 459 (713)
++|+.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 777788888887776544 66777888888888877754 457777888888888888776655 677788888888
Q ss_pred CCCCCCC
Q 041089 460 PNNQLNG 466 (713)
Q Consensus 460 ~~n~l~~ 466 (713)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 8887773
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=309.69 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=126.8
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEec
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSL 163 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 163 (713)
+++++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57888888888888777777888888888888888887777777777777777777777776655555666677777777
Q ss_pred cCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCccc
Q 041089 164 YDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGS 243 (713)
Q Consensus 164 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 243 (713)
++|.+++..+..+.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----------------- 174 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH----------------- 174 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT-----------------
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc-----------------
Confidence 777666666666666666666666666666555556666666666666666555443333443
Q ss_pred CCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 244 LPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 244 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.......+|++|++++|
T Consensus 175 --------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 175 --------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp --------CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred --------cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 444444444444444444445555555666666555544444333322233333333333
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-34 Score=301.25 Aligned_cols=349 Identities=17% Similarity=0.169 Sum_probs=205.1
Q ss_pred CCCCCCCCCCCC-ccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeec
Q 041089 38 TKSWNNSINLCQ-WTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLS 116 (713)
Q Consensus 38 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 116 (713)
+++|..+.+||. |.+..|.....++ ............-..++++++|++++|.++...+..|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 567887767764 6666664321111 2222222222233457899999999999886555668899999999999
Q ss_pred CCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCC
Q 041089 117 NNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRI 196 (713)
Q Consensus 117 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 196 (713)
+|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.++...+..+.++++|++|++++|.+++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998777778888888888888888888887888888888888888888888554445678888888888888888766
Q ss_pred CccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCC
Q 041089 197 PDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNA 276 (713)
Q Consensus 197 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 276 (713)
|..+..+++|++|++++|.+.+. .+..+++|+.+++++|.++ +. ...
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-------------------------~~-----~~~ 204 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-------------------------TL-----AIP 204 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-------------------------EE-----ECC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-------------------------cc-----CCC
Confidence 77788888888888888877654 2334455555555555444 21 112
Q ss_pred CCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccc
Q 041089 277 SKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLST 356 (713)
Q Consensus 277 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 356 (713)
++|+.|++++|.+..... ...++|+.|++++|.++.. ..+..+++|++|++++|.+++..|..+..+.
T Consensus 205 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 272 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ- 272 (390)
T ss_dssp SSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-
T ss_pred CcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChhHccccc-
Confidence 344444444444443211 1124555555555554431 2344445555555555544443343333332
Q ss_pred cccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEcc
Q 041089 357 TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLG 436 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 436 (713)
+|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++.. + +..+++|++|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence 44444444444443 2333344555666666666555 3344455555555666655555432 1 4445555555555
Q ss_pred CCccc
Q 041089 437 FNKLQ 441 (713)
Q Consensus 437 ~n~l~ 441 (713)
+|++.
T Consensus 348 ~N~~~ 352 (390)
T 3o6n_A 348 HNDWD 352 (390)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 55554
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.4e-35 Score=299.02 Aligned_cols=255 Identities=29% Similarity=0.510 Sum_probs=232.0
Q ss_pred cccEEEccCCceee--cCCccccCCCCCCEEeccC-CcccccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 041089 357 TMTLIAMAGNQISG--TIPPEIRNLFNLNGLGLEY-NQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNIL 433 (713)
Q Consensus 357 ~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 433 (713)
+++.+++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 67777888888877 7888888899999999994 88888889889999999999999999988888889999999999
Q ss_pred EccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcC
Q 041089 434 QLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHF 513 (713)
Q Consensus 434 ~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l 513 (713)
++++|.+++.+|..+..+++|++|++++|++.+.+|..++.+.+.++.|++++|++++.+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 99999999888999999999999999999998889988888875556899999999989999999887 99999999999
Q ss_pred CccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCC
Q 041089 514 SNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKG 593 (713)
Q Consensus 514 ~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~ 593 (713)
++.+|..+..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 999999999999999999999999987776 8889999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccccCCCCCCCCC
Q 041089 594 VFSNETRISLTGNEQLCGGL 613 (713)
Q Consensus 594 ~~~~l~~~~~~~n~~lc~~~ 613 (713)
.++.++.+++.+|+.+||.+
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cccccChHHhcCCCCccCCC
Confidence 88999999999999999864
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3e-35 Score=301.15 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCCCCCC----CCCCCCCCccccccCC--------CCCcEEEEECCCCCcceecCccccC
Q 041089 16 SNEMDRLALLAIKSQLQ-DPLGVTKSW----NNSINLCQWTGVTCGH--------RHQRVTELDLESQNIGGFLSPYIGN 82 (713)
Q Consensus 16 ~~~~~~~~ll~~k~~~~-~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~~~~l~~ 82 (713)
+..+|+.||++||+.+. |+.++..+| ....++|.|.|+.|.. ...+|+.|+|+++.+. .+|+.+.+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 44678999999999884 887778889 4567899999999952 2368999999999998 57788888
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcC--------
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGN-------- 154 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-------- 154 (713)
+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 999999999999998 88888999999999999999998 88888999999999999998888888877654
Q ss_pred -cCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEE
Q 041089 155 -WLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEA 233 (713)
Q Consensus 155 -l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 233 (713)
+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 777777777777777 66777777777777777777777 456667777777777777777777777777766666666
Q ss_pred EccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCccc
Q 041089 234 YLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHF 289 (713)
Q Consensus 234 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 289 (713)
++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 259 ~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666666665554 566666666666666666666666666666666555433
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-33 Score=312.30 Aligned_cols=347 Identities=18% Similarity=0.172 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCC----ccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCe
Q 041089 37 VTKSWNNSINLCQ----WTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLET 112 (713)
Q Consensus 37 ~~~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 112 (713)
.+.+|..+.+||. |.++.|+. + ++....... ....-..+++++.+++++|.+....+..|..+++|++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~ 79 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred cccCCCCCCcCcccCcCceeEecCc---e---ecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence 4678988777774 55444431 1 111111111 1122235678999999999998766677889999999
Q ss_pred eeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCC
Q 041089 113 IVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKL 192 (713)
Q Consensus 113 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 192 (713)
|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 99999999988788888888888888888888888888888888888888888888866555568888888888888888
Q ss_pred CCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCcc
Q 041089 193 DGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQS 272 (713)
Q Consensus 193 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 272 (713)
++..|..|+.+++|++|++++|.+.+.. +..+++|+.+++++|.++ +.
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~-------------------------~l---- 207 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS-------------------------TL---- 207 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS-------------------------EE----
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc-------------------------cc----
Confidence 8777777888888888888888777542 333455555555555444 21
Q ss_pred CcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhh
Q 041089 273 LSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIA 352 (713)
Q Consensus 273 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 352 (713)
...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+.
T Consensus 208 -~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 208 -AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--------ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 12234445555555444322211 2455555555555543 12344455555555555544444343333
Q ss_pred hccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 041089 353 NLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNI 432 (713)
Q Consensus 353 ~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 432 (713)
.+. +|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+.+. + +..+++|++
T Consensus 276 ~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQ-RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp TCS-SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred Ccc-CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence 322 34444444444432 2223334444555555555444 3344444444444444444444422 1 333344444
Q ss_pred EEccCCccc
Q 041089 433 LQLGFNKLQ 441 (713)
Q Consensus 433 L~Ls~n~l~ 441 (713)
|++++|.+.
T Consensus 350 L~l~~N~~~ 358 (597)
T 3oja_B 350 LTLSHNDWD 358 (597)
T ss_dssp EECCSSCEE
T ss_pred EEeeCCCCC
Confidence 444444443
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-33 Score=293.96 Aligned_cols=333 Identities=19% Similarity=0.236 Sum_probs=173.3
Q ss_pred CCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEc
Q 041089 156 LKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYL 235 (713)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 235 (713)
+++++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555554333333445555555555555555444445555555555555555555444444444444444444
Q ss_pred cCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccC
Q 041089 236 FKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 236 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 315 (713)
++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+..
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 444444 33433322455555555555555544444455555555555555554432 12223333333333332211
Q ss_pred cCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCccccc
Q 041089 316 RTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGT 395 (713)
Q Consensus 316 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 395 (713)
+...++|++|++++|.+...
T Consensus 201 ------------------------------------------------------------~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 201 ------------------------------------------------------------LAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp ------------------------------------------------------------EECCSSCSEEECCSSCCCEE
T ss_pred ------------------------------------------------------------cCCCCcceEEECCCCeeeec
Confidence 01112344444444444321
Q ss_pred CCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCc
Q 041089 396 IPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGI 475 (713)
Q Consensus 396 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 475 (713)
|. ...++|++|++++|.+++. ..+..+++|++|++++|++.+
T Consensus 221 -------------------------~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~--------- 262 (390)
T 3o6n_A 221 -------------------------RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK--------- 262 (390)
T ss_dssp -------------------------EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE---------
T ss_pred -------------------------cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC---------
Confidence 11 1123455555555554432 345555555555555554431
Q ss_pred ccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEe
Q 041089 476 TPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELD 555 (713)
Q Consensus 476 ~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 555 (713)
..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 263 ----------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 263 ----------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp ----------------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred ----------------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 223344455566666666666653 4445556677777777777776 4555667778888888
Q ss_pred CCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCCCCCCCCcccccCCCCCCCC
Q 041089 556 LSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLCGG 612 (713)
Q Consensus 556 Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 612 (713)
+++|.++.. | +..+++|++|++++|++.+.... ..+..+....+.+++..|..
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 888887744 2 66778888888888888775432 23444555566777777764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-33 Score=308.87 Aligned_cols=160 Identities=22% Similarity=0.280 Sum_probs=97.1
Q ss_pred CCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeC
Q 041089 429 LLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDI 508 (713)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~L 508 (713)
+|+.|++++|.+++ +..+..+++|++|++++|.+.+ ..|..+..+++|++|+|
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-------------------------~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-------------------------IMYHPFVKMQRLERLYI 285 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-------------------------EESGGGTTCSSCCEEEC
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-------------------------CCHHHhcCccCCCEEEC
Confidence 44555555555543 2345555555555555544432 22334445556666666
Q ss_pred CCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCccc
Q 041089 509 SRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGE 588 (713)
Q Consensus 509 s~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 588 (713)
++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | +..+++|++|++++|++.|.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 6666664 4555556667777777777776 4566677777888888888887754 2 56677888888888888876
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCCCcc
Q 041089 589 VPKKGVFSNETRISLTGNEQLCGGLGELHLPAC 621 (713)
Q Consensus 589 ~p~~~~~~~l~~~~~~~n~~lc~~~~~~~~~~c 621 (713)
.+. ..+..+....+.+++..|+.......+.|
T Consensus 361 ~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 361 SLR-ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHH-HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred hHH-HHHHHHhhhccccccccCCcchhccCCcc
Confidence 432 23444555667788888876433333333
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7e-32 Score=280.07 Aligned_cols=306 Identities=23% Similarity=0.366 Sum_probs=157.8
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+. +.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 44555666666666555 233 25556666666666666553 222 55555555555555555432 23555666666
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
|++++|.+++. +. +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 66666665533 22 556666666666666444222 235566666666666665543322 33444444444444443
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCC
Q 041089 241 KGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTD 320 (713)
Q Consensus 241 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (713)
.+ ++. +. .+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++.
T Consensus 190 ~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----- 257 (347)
T 4fmz_A 190 ED-ISP-LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD----- 257 (347)
T ss_dssp CC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred cc-ccc-cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-----
Confidence 31 111 11 34444444444444443221 3344444444444444433222 3333333333333333221
Q ss_pred ccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCccc
Q 041089 321 LDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAI 400 (713)
Q Consensus 321 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 400 (713)
. ..+..+++|++|++++|.+++. +.+
T Consensus 258 --------------------------------------------------~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 258 --------------------------------------------------I--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp --------------------------------------------------C--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred --------------------------------------------------C--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 1 1344555666666666666543 345
Q ss_pred ccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCC
Q 041089 401 GELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLN 465 (713)
Q Consensus 401 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 465 (713)
..+++|++|++++|++.+..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666666666666666666666666677777777776665444 566677777777766653
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=3.9e-31 Score=274.46 Aligned_cols=306 Identities=25% Similarity=0.360 Sum_probs=197.7
Q ss_pred cCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCC
Q 041089 225 CNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLS 304 (713)
Q Consensus 225 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 304 (713)
..+++|++|+++++.+. .++. +. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34566677777776665 3443 22 56667777777766664322 66666677777766666543 2466666666
Q ss_pred eEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCE
Q 041089 305 KLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNG 384 (713)
Q Consensus 305 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 384 (713)
+|++++|.+... ..+..+++|+.|++++|.. ...++ .+..+++|++
T Consensus 114 ~L~l~~n~i~~~--------~~~~~l~~L~~L~l~~n~~-------------------------~~~~~-~~~~l~~L~~ 159 (347)
T 4fmz_A 114 ELYLNEDNISDI--------SPLANLTKMYSLNLGANHN-------------------------LSDLS-PLSNMTGLNY 159 (347)
T ss_dssp EEECTTSCCCCC--------GGGTTCTTCCEEECTTCTT-------------------------CCCCG-GGTTCTTCCE
T ss_pred EEECcCCcccCc--------hhhccCCceeEEECCCCCC-------------------------ccccc-chhhCCCCcE
Confidence 666666665431 1144445555555554433 22222 2556666666
Q ss_pred EeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCC
Q 041089 385 LGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQL 464 (713)
Q Consensus 385 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l 464 (713)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 6666666654322 5666667777777666654322 5566667777777766664332 56666777777777766
Q ss_pred CCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcc
Q 041089 465 NGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQS 544 (713)
Q Consensus 465 ~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~ 544 (713)
.+ ++. +..+..+ +.|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..|..
T Consensus 234 ~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 234 TD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 53 333 3344443 3666777766642 3577788899999999988864 35778889999999999998888888
Q ss_pred cccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCc
Q 041089 545 LNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFE 586 (713)
Q Consensus 545 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~ 586 (713)
+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8889999999999999987666 778889999999998875
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.2e-34 Score=306.96 Aligned_cols=361 Identities=15% Similarity=0.128 Sum_probs=187.2
Q ss_pred CcEEEEECCCCCcceecCc-cccCCCCCCEEECCCCCCCc----cCchhhhccCCCCeeeecCCCCcccCCcccc-CCC-
Q 041089 60 QRVTELDLESQNIGGFLSP-YIGNLSFLRVINLANNRFHG----QIPKEVGRLFRLETIVLSNNSFSGKIPTNLS-RCF- 132 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~- 132 (713)
.+++.|||+++.++..... .+..+++|++|+|++|++++ .++..+..+++|++|++++|.+++..+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3566677776666543322 25566667777777666653 3445566666666666666666644333322 233
Q ss_pred ---CCcEEEccCCcccc----ccchhhcCcCCCCEEeccCccccccCccccc-----CCCCCcEEEccCCCCCCC----C
Q 041089 133 ---NLIDFWVHTNNLVG----EIQAIIGNWLKLERLSLYDNQLTGQLRPSIG-----NLSALQTFDIAGNKLDGR----I 196 (713)
Q Consensus 133 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~ 196 (713)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 46666666666553 3455556666666666666665543332222 134555555555555532 2
Q ss_pred CccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCccc----CCcc
Q 041089 197 PDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGF----LPQS 272 (713)
Q Consensus 197 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 272 (713)
+..+..+++|++|++++|.+.+..+..+. ..+....++|++|++++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLC--------------------QGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHH--------------------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHH--------------------HHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 33344445555555555544432222111 11111234566666666655542 3444
Q ss_pred CcCCCCCcEEeccCccccccc-----ccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeecccccccc
Q 041089 273 LSNASKLEWLELNENHFSGQV-----RINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGAL 347 (713)
Q Consensus 273 l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 347 (713)
+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.... ..++..+..+++|++|++++|.+.+..
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHH
Confidence 555666666666666655432 1222345666666666666543100 013344555666666666666665443
Q ss_pred Chhhhhc----cccccEEEccCCceeec----CCccccCCCCCCEEeccCCcccccCCccccc-----ccccceeecccc
Q 041089 348 PHSIANL----STTMTLIAMAGNQISGT----IPPEIRNLFNLNGLGLEYNQLTGTIPPAIGE-----LRNLQYLGLVGN 414 (713)
Q Consensus 348 ~~~~~~~----~~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n 414 (713)
+..+... .++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 3333322 12555666665555543 3344455566666666666655443333322 446666666666
Q ss_pred cccc----cCCccccCCCCCCEEEccCCcccc
Q 041089 415 NIRG----IIPDSIGNLTLLNILQLGFNKLQG 442 (713)
Q Consensus 415 ~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~ 442 (713)
++++ .+|..+..+++|++|++++|++++
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 6554 445555555666666666665553
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-30 Score=266.71 Aligned_cols=215 Identities=22% Similarity=0.285 Sum_probs=99.8
Q ss_pred CCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccC
Q 041089 86 LRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYD 165 (713)
Q Consensus 86 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~ 165 (713)
+++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444444 3333331 3455555555555444444444555555555555554444445555555555555555
Q ss_pred ccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcC--CCcccccCCCcceEEEccCCCCccc
Q 041089 166 NQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSG--MFPLSVCNISSLDEAYLFKNRFKGS 243 (713)
Q Consensus 166 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 243 (713)
|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-c
Confidence 5554 3333332 455555555555554434445555555555555555532 333333333 4444444444443 2
Q ss_pred CCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 244 LPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 244 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 333221 34555555555555444444444555555555555444443333333333443333333
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.2e-30 Score=264.33 Aligned_cols=216 Identities=20% Similarity=0.297 Sum_probs=118.7
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCc
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNN 143 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 143 (713)
.++++++.+.. +|..+. ++|++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 35 ~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 35 VVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 34444444443 333332 567777777777776666667777777777777777776666667667777777776666
Q ss_pred cccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCC--CCCccccCCCCCCEEeCCCCcCcCCCc
Q 041089 144 LVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDG--RIPDSLGQLRNLNYLGTSENDFSGMFP 221 (713)
Q Consensus 144 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~ 221 (713)
+.. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 112 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 184 (330)
T 1xku_A 112 LKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---- 184 (330)
T ss_dssp CSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC----
T ss_pred CCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc----
Confidence 652 333222 456666666666555555555555556666655555532 33444444455555544444443
Q ss_pred ccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCC
Q 041089 222 LSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLP 301 (713)
Q Consensus 222 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 301 (713)
.+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 185 ---------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 185 ---------------------TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp ---------------------SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred ---------------------cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 233222 14555555555555555555555555555555555555544444444444
Q ss_pred CCCeEEcCCCcc
Q 041089 302 NLSKLYLGRNNL 313 (713)
Q Consensus 302 ~L~~L~l~~n~l 313 (713)
+|++|++++|.+
T Consensus 241 ~L~~L~L~~N~l 252 (330)
T 1xku_A 241 HLRELHLNNNKL 252 (330)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcC
Confidence 444444444433
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-33 Score=305.54 Aligned_cols=361 Identities=17% Similarity=0.100 Sum_probs=258.2
Q ss_pred CcEEEEECCCCCcce----ecCccccCCCCCCEEECCCCCCCccCchhhh-ccC----CCCeeeecCCCCcc----cCCc
Q 041089 60 QRVTELDLESQNIGG----FLSPYIGNLSFLRVINLANNRFHGQIPKEVG-RLF----RLETIVLSNNSFSG----KIPT 126 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~----~L~~L~Ls~n~l~~----~~p~ 126 (713)
.+++.|+|+++.+.. .++..+..+++|++|+|++|.+.+..+..+. .++ +|++|++++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 568999999999885 3567788999999999999999865554443 455 69999999999994 5688
Q ss_pred cccCCCCCcEEEccCCccccccchhhc-----CcCCCCEEeccCccccccC----cccccCCCCCcEEEccCCCCCCCCC
Q 041089 127 NLSRCFNLIDFWVHTNNLVGEIQAIIG-----NWLKLERLSLYDNQLTGQL----RPSIGNLSALQTFDIAGNKLDGRIP 197 (713)
Q Consensus 127 ~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 197 (713)
.+.++++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 899999999999999999876555443 3568999999999998743 5667788999999999999875444
Q ss_pred cccc-----CCCCCCEEeCCCCcCcCC----CcccccCCCcceEEEccCCCCcccC----CccccCCCCCCCEEeCCCCc
Q 041089 198 DSLG-----QLRNLNYLGTSENDFSGM----FPLSVCNISSLDEAYLFKNRFKGSL----PVCLGFNLPKLTVLVVAQNN 264 (713)
Q Consensus 198 ~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~ 264 (713)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+...+++|+.|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4443 367999999999998874 5667778899999999999887532 22233357889999999988
Q ss_pred Cccc----CCccCcCCCCCcEEeccCcccccccccccC-----CCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcE
Q 041089 265 LTGF----LPQSLSNASKLEWLELNENHFSGQVRINFN-----SLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVK 335 (713)
Q Consensus 265 l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 335 (713)
++.. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.... ..++..+..+++|++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC--SHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH--HHHHHHHhhCCCccE
Confidence 8764 566677788888888888887654433332 23678888888887654211 123344555666666
Q ss_pred EeeeccccccccChhhhhccccccEEEccCCceeecCCcccc-CCCCCCEEeccCCcccc----cCCcccccccccceee
Q 041089 336 LGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIR-NLFNLNGLGLEYNQLTG----TIPPAIGELRNLQYLG 410 (713)
Q Consensus 336 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ 410 (713)
|++++|.+++..+..+... +. ..++|++|++++|.+++ .++..+..+++|++|+
T Consensus 346 L~Ls~n~i~~~~~~~l~~~---------------------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQG---------------------LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp EECCSSBCHHHHHHHHHHH---------------------HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred EEccCCccccccHHHHHHH---------------------HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 6666666554433333221 11 14577777787777775 5666677778888888
Q ss_pred cccccccccCCcc----c-cCCCCCCEEEccCCccccc
Q 041089 411 LVGNNIRGIIPDS----I-GNLTLLNILQLGFNKLQGS 443 (713)
Q Consensus 411 L~~n~l~~~~~~~----~-~~l~~L~~L~Ls~n~l~~~ 443 (713)
+++|++++..... + .....|+.|++.++.+...
T Consensus 405 l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 8888776442111 1 1234677777777665543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=260.66 Aligned_cols=288 Identities=22% Similarity=0.270 Sum_probs=160.7
Q ss_pred cceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEc
Q 041089 229 SLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYL 308 (713)
Q Consensus 229 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 308 (713)
+++.++++++.++ .+|..+ .++++.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555554 555543 256777777777777666667777777777777777777666666777777777777
Q ss_pred CCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEecc
Q 041089 309 GRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLE 388 (713)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~ 388 (713)
++|.++.. |..+. .+|++|++++|.+++..+..+..+++|++|+++
T Consensus 110 ~~n~l~~l-------------------------------~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEI-------------------------------PPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSC-------------------------------CSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCcc-------------------------------Ccccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 66655421 11111 144444444444443333345555555555555
Q ss_pred CCccc--ccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCC
Q 041089 389 YNQLT--GTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNG 466 (713)
Q Consensus 389 ~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 466 (713)
+|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~----------- 220 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY----------- 220 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCS-----------
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCC-----------
Confidence 55553 2344444444 55555555555543 232222 3444444444444443333444444444
Q ss_pred CCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccc
Q 041089 467 TLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLN 546 (713)
Q Consensus 467 ~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 546 (713)
.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 221 --------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 221 --------------RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp --------------CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred --------------EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 3444444444444445566666777777777666 5666666667777777777777665555554
Q ss_pred c------CCCCCEEeCCCCccc--ccCCccCCCCCCCCEEeCCCcc
Q 041089 547 A------LKSIKELDLSCNNLS--GQIPIHLQDLPFLEYLNLSYNH 584 (713)
Q Consensus 547 ~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~n~ 584 (713)
. ..+|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3 245667777777666 4555666667777777776664
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.1e-29 Score=256.23 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=167.2
Q ss_pred CCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEcc
Q 041089 157 KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLF 236 (713)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 236 (713)
++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 3343332 456666666666665444556666666666666666665556666666666666666
Q ss_pred CCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCccccc--ccccccCCCCCCCeEEcCCCccc
Q 041089 237 KNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSG--QVRINFNSLPNLSKLYLGRNNLG 314 (713)
Q Consensus 237 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 314 (713)
+|.++ .+|..++ ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 66665 4555432 577777777777776666667777777777777777753 45556677777777777777665
Q ss_pred CcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccc
Q 041089 315 TRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTG 394 (713)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (713)
..... + .+ +|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 185 ~l~~~-------~--~~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 185 TIPQG-------L--PP-------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SCCSS-------C--CT-------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred cCCcc-------c--cc-------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 32110 0 02 45555555555555555555566666666666666665
Q ss_pred cCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhc------CCCCcEEeCCCCCCCC-C
Q 041089 395 TIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGK------CQNLMQLSAPNNQLNG-T 467 (713)
Q Consensus 395 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-~ 467 (713)
..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.. .
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 55555666666666666666665 45555666666666666666665444444432 2456666666666541 2
Q ss_pred CCccccCcccccchhcccCCc
Q 041089 468 LPPQIFGITPLSKLLDLSENH 488 (713)
Q Consensus 468 ~~~~~~~~~~l~~~l~ls~n~ 488 (713)
+++..+.....++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 333333333333456666653
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.9e-32 Score=304.73 Aligned_cols=405 Identities=14% Similarity=0.129 Sum_probs=236.1
Q ss_pred CCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCC---ccCchh------------hhccCCCC
Q 041089 47 LCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFH---GQIPKE------------VGRLFRLE 111 (713)
Q Consensus 47 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~------------~~~l~~L~ 111 (713)
|++|.++.+... . .+.+..+ .....+..+..+++|++|+|+++... +.+|.. +..+++|+
T Consensus 41 ck~W~~~~~~~~-~---~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSETR-E---HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHHC-C---EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhccc-c---EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 457998865431 2 2222222 22334455677888999999775321 222222 22778888
Q ss_pred eeeecCCCCcccCCccccC-CC-CCcEEEccCCcc-cc-ccchhhcCcCCCCEEeccCcccccc----CcccccCCCCCc
Q 041089 112 TIVLSNNSFSGKIPTNLSR-CF-NLIDFWVHTNNL-VG-EIQAIIGNWLKLERLSLYDNQLTGQ----LRPSIGNLSALQ 183 (713)
Q Consensus 112 ~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~l~~n~~-~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~ 183 (713)
+|+|++|.+++..+..+.. ++ +|++|++++|.. .. .++....++++|++|+|++|.+++. ++..+..+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 8888888887766666655 33 488888888762 21 2333345788888888888887655 334456778888
Q ss_pred EEEccCCCCCC----CCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCc---ccCCccccCCCCCCC
Q 041089 184 TFDIAGNKLDG----RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFK---GSLPVCLGFNLPKLT 256 (713)
Q Consensus 184 ~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~~l~~L~ 256 (713)
+|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.++++|++|+++..... +..+..+. .+++|+
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~ 273 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPRKLC 273 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCTTCC
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh-cccccc
Confidence 88888888762 334445677888888888887775 5667777888888888753222 12223333 566777
Q ss_pred EEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccc-cccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcE
Q 041089 257 VLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVR-INFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVK 335 (713)
Q Consensus 257 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 335 (713)
.|++.++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+... .+......+++|++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-----~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-----GLEVLAQYCKQLKR 346 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-----HHHHHHHHCTTCCE
T ss_pred ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-----HHHHHHHhCCCCCE
Confidence 777766432 3455666667777777777777554332 234667777777776 333210 22233355667777
Q ss_pred Eeeec-----------cccccccChhhhhccccccEEEccCCceeecCCccccC-CCCCCEEecc----CCccccc----
Q 041089 336 LGLVF-----------NRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRN-LFNLNGLGLE----YNQLTGT---- 395 (713)
Q Consensus 336 L~l~~-----------n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---- 395 (713)
|++++ +.+++.....+....++|+.|++..+.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 77772 34443322222222346666666666665554444443 5666666664 4445432
Q ss_pred -CCcccccccccceeeccccc--ccccCCcccc-CCCCCCEEEccCCcccc-cCChhhhcCCCCcEEeCCCCCCC
Q 041089 396 -IPPAIGELRNLQYLGLVGNN--IRGIIPDSIG-NLTLLNILQLGFNKLQG-SIPSYLGKCQNLMQLSAPNNQLN 465 (713)
Q Consensus 396 -~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~ 465 (713)
++..+..+++|++|+++.|. +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 22224456666666665332 3333222222 25566666666666554 22333455666666666666554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=9e-31 Score=292.59 Aligned_cols=400 Identities=14% Similarity=0.113 Sum_probs=302.8
Q ss_pred CcEEEEECCCCCc---ceecCcc------------ccCCCCCCEEECCCCCCCccCchhhhcc--CCCCeeeecCCC-Cc
Q 041089 60 QRVTELDLESQNI---GGFLSPY------------IGNLSFLRVINLANNRFHGQIPKEVGRL--FRLETIVLSNNS-FS 121 (713)
Q Consensus 60 ~~v~~L~L~~~~l---~~~~~~~------------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~-l~ 121 (713)
.++++|+|+++.. .+.+|.. ...+++|++|+|++|.+++..+..+... .+|++|+|++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 5689999977532 1222222 2278999999999999987777777764 459999999986 22
Q ss_pred c-cCCccccCCCCCcEEEccCCccccc----cchhhcCcCCCCEEeccCcccc----ccCcccccCCCCCcEEEccCCCC
Q 041089 122 G-KIPTNLSRCFNLIDFWVHTNNLVGE----IQAIIGNWLKLERLSLYDNQLT----GQLRPSIGNLSALQTFDIAGNKL 192 (713)
Q Consensus 122 ~-~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l 192 (713)
. .++....++++|++|++++|.+++. ++.....+++|++|++++|.++ +.++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 2233345899999999999998766 5556678999999999999987 34556677899999999999998
Q ss_pred CCCCCccccCCCCCCEEeCCCCcCc---CCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccC
Q 041089 193 DGRIPDSLGQLRNLNYLGTSENDFS---GMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFL 269 (713)
Q Consensus 193 ~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 269 (713)
.+ +|..+..+++|+.|+++..... +..+..+..+++|+.++++.+. .+.+|..+. .+++|++|++++|.+++..
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~-~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFP-FAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGG-GGGGCCEEEETTCCCCHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHh-hcCCCcEEecCCCcCCHHH
Confidence 84 7788999999999999864332 3345567888999999998753 335665554 7899999999999977543
Q ss_pred C-ccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCC-----------CcccCcCCCCccccccccCCCCCcEEe
Q 041089 270 P-QSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGR-----------NNLGTRTSTDLDFITLLTNCSKLVKLG 337 (713)
Q Consensus 270 ~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~~~l~~~~~L~~L~ 337 (713)
. ..+..+++|+.|+++++...+.++..+..+++|++|++++ +.++.. ........+++|++|+
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEE
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEE
Confidence 3 3468899999999994433333444456789999999993 444321 2233355689999999
Q ss_pred eeccccccccChhhhhccccccEEEcc----CCceeec-----CCccccCCCCCCEEeccCCc--ccccCCcccc-cccc
Q 041089 338 LVFNRFGGALPHSIANLSTTMTLIAMA----GNQISGT-----IPPEIRNLFNLNGLGLEYNQ--LTGTIPPAIG-ELRN 405 (713)
Q Consensus 338 l~~n~~~~~~~~~~~~~~~~L~~l~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~ 405 (713)
+..+.+++..+..+....++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 999999988888887755699999996 5667653 33446779999999998654 6655555554 4899
Q ss_pred cceeeccccccccc-CCccccCCCCCCEEEccCCccccc-CChhhhcCCCCcEEeCCCCCCCCC
Q 041089 406 LQYLGLVGNNIRGI-IPDSIGNLTLLNILQLGFNKLQGS-IPSYLGKCQNLMQLSAPNNQLNGT 467 (713)
Q Consensus 406 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~ 467 (713)
|++|++++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999998863 445567899999999999998754 344456799999999999998754
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-28 Score=249.12 Aligned_cols=252 Identities=19% Similarity=0.227 Sum_probs=176.6
Q ss_pred CCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcc--cC
Q 041089 47 LCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSG--KI 124 (713)
Q Consensus 47 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~ 124 (713)
.|.|.++.|... .++. +|..+. ++|++|+|++|+++...+..|.++++|++|++++|.++. ..
T Consensus 6 ~C~~~~l~c~~~------------~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNSK------------GLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCSS------------CCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCCC------------Cccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 488988888752 2222 222222 577888888888774444456778888888888887763 23
Q ss_pred CccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCc-ccccCCCCCcEEEccCCCCCCCCCccccCC
Q 041089 125 PTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLR-PSIGNLSALQTFDIAGNKLDGRIPDSLGQL 203 (713)
Q Consensus 125 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 203 (713)
|..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 5566677777777777777763 45557777777777777777775544 467777777777777777776667777777
Q ss_pred CCCCEEeCCCCcCcC-CCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEE
Q 041089 204 RNLNYLGTSENDFSG-MFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWL 282 (713)
Q Consensus 204 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 282 (713)
++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 777777777777765 4666677777777777777777755555554 67777777777777776666667777777777
Q ss_pred eccCcccccccccccCCCC-CCCeEEcCCCcccC
Q 041089 283 ELNENHFSGQVRINFNSLP-NLSKLYLGRNNLGT 315 (713)
Q Consensus 283 ~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~ 315 (713)
++++|.+++..+..+..++ +|+.|++++|.+..
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 8777777777777777664 77777777777654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.6e-29 Score=257.91 Aligned_cols=288 Identities=19% Similarity=0.206 Sum_probs=216.4
Q ss_pred CCCCCCCCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCC
Q 041089 40 SWNNSINLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNS 119 (713)
Q Consensus 40 ~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 119 (713)
.|.....+|.|.|+ |+ .+++.++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 45555677999876 54 34555554 344443 478888888888887666678888888888888888
Q ss_pred CcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCc-ccccCCCCCcEEEccCC-CCCCCCC
Q 041089 120 FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLR-PSIGNLSALQTFDIAGN-KLDGRIP 197 (713)
Q Consensus 120 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~ 197 (713)
+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++| .+....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 887777788888888888888888887666668888888888888888885433 46888888888888888 4665556
Q ss_pred ccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCc---
Q 041089 198 DSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLS--- 274 (713)
Q Consensus 198 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--- 274 (713)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|......+++|+.|++++|.+++..+..+.
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 77888888888888888888888888888888888888888875 55655544578888899888888876544432
Q ss_pred CCCCCcEEeccCccccc----ccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccC
Q 041089 275 NASKLEWLELNENHFSG----QVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALP 348 (713)
Q Consensus 275 ~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 348 (713)
....++.++++++.+.+ .+|..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.+..|
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcCC
Confidence 45678888888887765 356667888899999999998874321 224678889999999998887655
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.3e-28 Score=246.79 Aligned_cols=274 Identities=17% Similarity=0.213 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCC--CCCCCCccccccCCCCCcEEEEECCCCCccee----cCcc--ccCCCCCCEEECCCCCCCccCch
Q 041089 31 LQDPLGVTKSWNN--SINLCQWTGVTCGHRHQRVTELDLESQNIGGF----LSPY--IGNLSFLRVINLANNRFHGQIPK 102 (713)
Q Consensus 31 ~~~~~~~~~~w~~--~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~----~~~~--l~~l~~L~~L~Ls~n~l~~~~p~ 102 (713)
+.|+...+..|+. ..++|.|.+..|...... -.-+...|. .+.. -...+++++|+|++|.++ .+|.
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 3344445667865 257899988887321110 011111121 1111 134589999999999998 8888
Q ss_pred hhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccC----
Q 041089 103 EVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGN---- 178 (713)
Q Consensus 103 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~---- 178 (713)
.++++++|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 9999999999999999999 89999999999999999999999 78999999999999999999998889887765
Q ss_pred -----CCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCC
Q 041089 179 -----LSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLP 253 (713)
Q Consensus 179 -----l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 253 (713)
+++|++|++++|.++ .+|..++++++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+. .++
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~ 253 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRA 253 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc-CCC
Confidence 999999999999998 889999999999999999999995 566788999999999999999989998777 899
Q ss_pred CCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccC
Q 041089 254 KLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 315 (713)
+|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988776543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.4e-27 Score=253.51 Aligned_cols=233 Identities=22% Similarity=0.234 Sum_probs=199.1
Q ss_pred ccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEc
Q 041089 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435 (713)
Q Consensus 356 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 435 (713)
..++.|++++|.+++..+..|.++++|++|+|++|.+++..+..+.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 37888888888888887888888888999999988888888888888888999999988888776677888888999999
Q ss_pred cCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCc
Q 041089 436 GFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSN 515 (713)
Q Consensus 436 s~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 515 (713)
++|++....+..|..+++|++|++++|...+.++...+.....++.|++++|.+++. | .+..+++|++|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 998888766677888889999999886555566665443333345888999988853 4 57889999999999999999
Q ss_pred cCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 516 EIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 516 ~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 889999999999999999999999999999999999999999999998888889999999999999999988765
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=251.72 Aligned_cols=233 Identities=23% Similarity=0.229 Sum_probs=197.1
Q ss_pred ccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEc
Q 041089 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQL 435 (713)
Q Consensus 356 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 435 (713)
..++.|++++|++++..+..|.++++|++|+|++|.+++..+..+.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 36788888888888777788888888888888888888777788888888888888888888666667888888888888
Q ss_pred cCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCc
Q 041089 436 GFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSN 515 (713)
Q Consensus 436 s~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 515 (713)
++|.+....+..|..+++|++|++++|...+.++...+.....++.|++++|.++ .+| .+..+++|++|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888887767778888888888888866555666644433333458888888887 445 47889999999999999998
Q ss_pred cCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 516 EIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 516 ~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 889999999999999999999999999999999999999999999998888889999999999999999988764
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.7e-27 Score=239.67 Aligned_cols=249 Identities=22% Similarity=0.219 Sum_probs=210.3
Q ss_pred CEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccc--cchhhcCcCCCCEEecc
Q 041089 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGE--IQAIIGNWLKLERLSLY 164 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~Ls 164 (713)
+.++++++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57889998887 6676543 6899999999999954445579999999999999998743 47778889999999999
Q ss_pred CccccccCcccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcc-
Q 041089 165 DNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIP-DSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKG- 242 (713)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 242 (713)
+|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99998 567779999999999999999986544 579999999999999999999888889999999999999999886
Q ss_pred cCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCcc
Q 041089 243 SLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLD 322 (713)
Q Consensus 243 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (713)
.+|..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 166 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------ 238 (306)
T 2z66_A 166 FLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------ 238 (306)
T ss_dssp EECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC------
T ss_pred cchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc------
Confidence 4566555 889999999999999988888899999999999999999887777788899999999999988763
Q ss_pred ccccccCC-CCCcEEeeeccccccc
Q 041089 323 FITLLTNC-SKLVKLGLVFNRFGGA 346 (713)
Q Consensus 323 ~~~~l~~~-~~L~~L~l~~n~~~~~ 346 (713)
.+..+..+ ++|++|++++|.+.+.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CHHHHHhhhccCCEEEccCCCeecc
Confidence 33344555 3788888888877654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=249.66 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=127.8
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34455566888999888 6776654 58999999999998766668888899999999988888877888888888888
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEeCCCCc-CcCCCcccccCCCcceEEEccCC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIP-DSLGQLRNLNYLGTSEND-FSGMFPLSVCNISSLDEAYLFKN 238 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n 238 (713)
|++++|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+.++++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8888888886555558888888888888888874333 367778888888888773 55444555666666666666555
Q ss_pred CCcccCCccccCCCCCCCEEeCCCCcC
Q 041089 239 RFKGSLPVCLGFNLPKLTVLVVAQNNL 265 (713)
Q Consensus 239 ~l~~~~p~~~~~~l~~L~~L~L~~n~l 265 (713)
.+++..|..+. .+++|++|++++|.+
T Consensus 185 ~l~~~~~~~l~-~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 185 DLQSYEPKSLK-SIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCEECTTTTT-TCSEEEEEEEECSCS
T ss_pred CcCccCHHHHh-ccccCCeecCCCCcc
Confidence 55543333333 334444444444433
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=256.71 Aligned_cols=246 Identities=17% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCC-cccCCcccc-------CCCCCcEEEccCCccccccchhh--
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSF-SGKIPTNLS-------RCFNLIDFWVHTNNLVGEIQAII-- 152 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~l~~n~~~~~~~~~l-- 152 (713)
.++|++|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34444444444444 344443332 44445554444 223333333 44455555555555544444443
Q ss_pred cCcCCCCEEeccCccccccCcccccCC-----CCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC--Ccccc-
Q 041089 153 GNWLKLERLSLYDNQLTGQLRPSIGNL-----SALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM--FPLSV- 224 (713)
Q Consensus 153 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~- 224 (713)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|.+.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4445555555555555443 4444443 4555555555555544444555555555555555554433 12222
Q ss_pred -cCCCcceEEEccCCCCcc--cCCccccCCCCCCCEEeCCCCcCcccCC-ccCcCCCCCcEEeccCcccccccccccCCC
Q 041089 225 -CNISSLDEAYLFKNRFKG--SLPVCLGFNLPKLTVLVVAQNNLTGFLP-QSLSNASKLEWLELNENHFSGQVRINFNSL 300 (713)
Q Consensus 225 -~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 300 (713)
..+++|++|++++|.+++ .++..++..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 445555555555555441 2222332344555555555555554442 23344555555555555555 3333333
Q ss_pred CCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccc
Q 041089 301 PNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFG 344 (713)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 344 (713)
++|++|++++|.+++. +. +..+++|++|++++|.++
T Consensus 274 ~~L~~L~Ls~N~l~~~-------p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-------PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-------CC-TTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-------hh-HhhCCCCCEEeccCCCCC
Confidence 5555555555555432 11 444555666666666554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.7e-27 Score=239.43 Aligned_cols=232 Identities=22% Similarity=0.228 Sum_probs=157.4
Q ss_pred CCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCc-ccccCChhhhcCCCCcEEe
Q 041089 380 FNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNK-LQGSIPSYLGKCQNLMQLS 458 (713)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~ 458 (713)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455666666666655555555556666666666666655555555566666666666664 4444455555666666666
Q ss_pred CCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCccc
Q 041089 459 APNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFN 538 (713)
Q Consensus 459 l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~ 538 (713)
+++|++.+..|..+..+..+. .|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQ-YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCC-EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 666666544444444444443 6666666666555566788889999999999998766667888999999999999999
Q ss_pred ccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCCCCCCCCcccccCCCCCCCC
Q 041089 539 GSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLCGG 612 (713)
Q Consensus 539 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 612 (713)
+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++.......+.......+...|..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 88888899999999999999999977767788899999999999999887764322222333334445555543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-26 Score=246.49 Aligned_cols=244 Identities=21% Similarity=0.196 Sum_probs=173.3
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++.++..+.. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+
T Consensus 59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 3344444443 333333 5788888888888877788888888888888888888877777888888888888888888
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCC-CccccCCCCCCEEeCCCCcCcCCCccc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRI-PDSLGQLRNLNYLGTSENDFSGMFPLS 223 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~ 223 (713)
++..+..+..+++|++|++++|.++...+..|.++++|++|++++|...+.+ +..|..+++|++|++++|.+.+. | .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-c
Confidence 8777777788888888888888888666667888888888888874433333 34577788888888888877754 2 3
Q ss_pred ccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCC
Q 041089 224 VCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNL 303 (713)
Q Consensus 224 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 303 (713)
+..+++|++|++++|.+++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 56666777777777776655554444 66677777777777776666666777777777777777766666666666666
Q ss_pred CeEEcCCCccc
Q 041089 304 SKLYLGRNNLG 314 (713)
Q Consensus 304 ~~L~l~~n~l~ 314 (713)
+.|++++|.+.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 66666666554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=231.81 Aligned_cols=224 Identities=21% Similarity=0.125 Sum_probs=142.4
Q ss_pred EEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 63 TELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 63 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
+.++.+++++... |..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666666653 3322 457788888888877666667777777777777777777666666777777777777766
Q ss_pred c-cccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCc
Q 041089 143 N-LVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221 (713)
Q Consensus 143 ~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 221 (713)
. +....+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 554445566666666666666666665555556666666666666666654444445555555555555555543333
Q ss_pred ccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCC
Q 041089 222 LSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLP 301 (713)
Q Consensus 222 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 301 (713)
..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..++
T Consensus 171 ~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFR-------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTT-------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HHhc-------------------------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 2233 456666666666666666666666777777777777777665555566667
Q ss_pred CCCeEEcCCCccc
Q 041089 302 NLSKLYLGRNNLG 314 (713)
Q Consensus 302 ~L~~L~l~~n~l~ 314 (713)
+|+.|++++|.+.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 7777777766654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.7e-28 Score=248.29 Aligned_cols=246 Identities=21% Similarity=0.229 Sum_probs=153.6
Q ss_pred CCCCcEEeeeccccccccChhhhhccccccEEEccCCce-eecCCcccc-------CCCCCCEEeccCCcccccCCccc-
Q 041089 330 CSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQI-SGTIPPEIR-------NLFNLNGLGLEYNQLTGTIPPAI- 400 (713)
Q Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l- 400 (713)
.++|+.+++++|.+ .+|..+.. .++.+++++|.+ ...+|..+. .+++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34455555555555 44544443 255555666555 233444333 45666666666666666555554
Q ss_pred -ccccccceeecccccccccCCccccCC-----CCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCC--CCccc
Q 041089 401 -GELRNLQYLGLVGNNIRGIIPDSIGNL-----TLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGT--LPPQI 472 (713)
Q Consensus 401 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~ 472 (713)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+..+++|++|++++|++.+. +|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5666666666666666654 5544444 5666666666666655556666666666666666665443 12222
Q ss_pred --cCcccccchhcccCCcCCC--CCC-ccccCCCCCcEEeCCCCcCCccCc-ccCcCCCCCceeeCcCCcccccCCcccc
Q 041089 473 --FGITPLSKLLDLSENHFSG--SIP-LEVGNLKSLVQLDISRNHFSNEIP-VTLSACTTLEYLLMQGNSFNGSIPQSLN 546 (713)
Q Consensus 473 --~~~~~l~~~l~ls~n~~~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 546 (713)
..+..+ +.|++++|++++ .++ ..+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..+.
T Consensus 196 ~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 196 CPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 233333 356666666552 111 233567888888888888887664 45566788888888888888 6777665
Q ss_pred cCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcc
Q 041089 547 ALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 547 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
++|+.||+++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7888888888888866 55 7888888888888888865
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-26 Score=253.37 Aligned_cols=289 Identities=22% Similarity=0.273 Sum_probs=155.9
Q ss_pred CCCCCCCCCCCCCccccccC--C----CCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCC
Q 041089 37 VTKSWNNSINLCQWTGVTCG--H----RHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRL 110 (713)
Q Consensus 37 ~~~~w~~~~~~c~w~gv~c~--~----~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 110 (713)
....|....+||.|.|..|. . ....++.|+++++.++ .+|..+. ++|++|+|++|.++ .+|. .+++|
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 34567777789999764321 0 1135778888888887 4555554 78888888888887 4554 46778
Q ss_pred CeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCC
Q 041089 111 ETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGN 190 (713)
Q Consensus 111 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 190 (713)
++|+|++|+++ .+|. .+++|++|++++|.+++..+ .+++|++|++++|.+++ +|.. +++|++|++++|
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 88888888877 4554 55667777777776664322 44566666666666653 3332 356666666666
Q ss_pred CCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCC
Q 041089 191 KLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLP 270 (713)
Q Consensus 191 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 270 (713)
.+++ +|. .+.+|+.|++++|.+.+ +| ..+++|+.|++++|.+++ +|
T Consensus 152 ~l~~-l~~---~~~~L~~L~L~~N~l~~-------------------------l~----~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 152 QLAS-LPA---LPSELCKLWAYNNQLTS-------------------------LP----MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CC----CCCTTCCEEECCSSCCSC-CC
T ss_pred cCCC-cCC---ccCCCCEEECCCCCCCC-------------------------Cc----ccCCCCcEEECCCCCCCC-CC
Confidence 6552 332 22445555555555543 33 134455555555555543 22
Q ss_pred ccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChh
Q 041089 271 QSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHS 350 (713)
Q Consensus 271 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 350 (713)
.. .++|+.|++++|.++.. |. .+++|+.|++++|.+++.+ ..+++|+.|++++|.++ .+|.
T Consensus 198 ~~---~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 198 TL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp CC---CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS-CCCC-
T ss_pred Cc---cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCC-cCCc-
Confidence 21 24555555555555432 11 1245555555555554311 12234444444444443 2222
Q ss_pred hhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccc
Q 041089 351 IANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIG 401 (713)
Q Consensus 351 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 401 (713)
..++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+.
T Consensus 259 ---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 1124445555555444 4444555555555555555555544444433
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=239.57 Aligned_cols=244 Identities=20% Similarity=0.206 Sum_probs=166.9
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++.++..+.. +|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++
T Consensus 48 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 3344444443 334333 5778888888888877777788888888888888888876667777888888888888877
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCC-CccccCCCCCCEEeCCCCcCcCCCccc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRI-PDSLGQLRNLNYLGTSENDFSGMFPLS 223 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~ 223 (713)
+...+..+..+++|++|++++|.++...+..|.++++|++|++++|...+.+ +..|..+++|++|++++|.+... | .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-c
Confidence 7666667777888888888888877666667777888888888774433333 34677777788888877777633 3 3
Q ss_pred ccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCC
Q 041089 224 VCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNL 303 (713)
Q Consensus 224 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 303 (713)
+..+++|++|++++|.+++..|..+. .+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred cCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 55666666666666666644444443 66666666666666666666666666667777777766666655556666666
Q ss_pred CeEEcCCCccc
Q 041089 304 SKLYLGRNNLG 314 (713)
Q Consensus 304 ~~L~l~~n~l~ 314 (713)
+.|++++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 66666666553
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.1e-27 Score=238.33 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=196.5
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.++...+++.+.+...+...+..+++|++|+|++|++++..|..|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 456777888888877766777788899999999999998888899999999999999999986554 889999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887543 347899999999988865443 367888999999988877777888888888888888888877
Q ss_pred Cccccc-CCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccC
Q 041089 220 FPLSVC-NISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFN 298 (713)
Q Consensus 220 ~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 298 (713)
.+..+. .+++|++|++++|.+++. +... .+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cccc--ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhh
Confidence 666653 678888888888887743 3322 467788888888877754 3447777778888888777774 455667
Q ss_pred CCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeee
Q 041089 299 SLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLV 339 (713)
Q Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 339 (713)
.+++|+.|++++|.+... ..+..+..+++|+.+++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCc-----CHHHHHhccccceEEECC
Confidence 777777777777766521 333444555555555554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8e-27 Score=237.94 Aligned_cols=268 Identities=16% Similarity=0.134 Sum_probs=180.6
Q ss_pred CCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEecc
Q 041089 85 FLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLY 164 (713)
Q Consensus 85 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls 164 (713)
.++..+++.+.+....+..+..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45566778887765555666777899999999999997777888999999999999999887665 8888999999999
Q ss_pred CccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccC
Q 041089 165 DNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSL 244 (713)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 244 (713)
+|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9988743 2348888999998888855443 3567888888888888776767777777777777777766544
Q ss_pred CccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCcccc
Q 041089 245 PVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFI 324 (713)
Q Consensus 245 p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 324 (713)
+..+...+++|++|++++|.+++. .....+++|++|++++|.+++..+ .+..+++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~---------------------- 215 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAG---------------------- 215 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTT----------------------
T ss_pred HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCc----------------------
Confidence 444433455666666666665543 112234455555555554443222 1333333
Q ss_pred ccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCccc-ccCCcccccc
Q 041089 325 TLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLT-GTIPPAIGEL 403 (713)
Q Consensus 325 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l 403 (713)
|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+
T Consensus 216 ---------------------------------L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 216 ---------------------------------VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp ---------------------------------CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ---------------------------------ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 333333334333 23445666778888888888877 6667777788
Q ss_pred cccceeecccc-cccccCC
Q 041089 404 RNLQYLGLVGN-NIRGIIP 421 (713)
Q Consensus 404 ~~L~~L~L~~n-~l~~~~~ 421 (713)
++|++++++++ .+.+..+
T Consensus 262 ~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSS
T ss_pred ccceEEECCCchhccCCch
Confidence 88888888744 3444433
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.1e-29 Score=279.39 Aligned_cols=439 Identities=17% Similarity=0.153 Sum_probs=244.4
Q ss_pred CEEECCCCCCCccCchhhhccCCCCeeeecCCCCccc---CCc------------cccCCCCCcEEEccCCccccccchh
Q 041089 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGK---IPT------------NLSRCFNLIDFWVHTNNLVGEIQAI 151 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~------------~l~~l~~L~~L~l~~n~~~~~~~~~ 151 (713)
+.++++..... ..+..+..+++|++|+++++..... .|. ....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666554332 2234577899999999999863321 121 1346788999999998888777776
Q ss_pred hc-CcCCCCEEeccCc-ccccc-CcccccCCCCCcEEEccCCCCCCCCCcccc----CCCCCCEEeCCCCc--CcCC-Cc
Q 041089 152 IG-NWLKLERLSLYDN-QLTGQ-LRPSIGNLSALQTFDIAGNKLDGRIPDSLG----QLRNLNYLGTSEND--FSGM-FP 221 (713)
Q Consensus 152 l~-~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~l~~n~--~~~~-~~ 221 (713)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|+.|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6889999999888 45432 444455788999999998887754444333 56788888888876 2111 11
Q ss_pred ccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCc-------CcccCCccCcCCCCCcEE-eccCccccccc
Q 041089 222 LSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNN-------LTGFLPQSLSNASKLEWL-ELNENHFSGQV 293 (713)
Q Consensus 222 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~l~~n~l~~~~ 293 (713)
....++++|++|++++|...+.+|..+. .+++|+.|++..+. +.+ ++..+.++++|+.+ .+.+... +.+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l 281 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYL 281 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhH
Confidence 1223467777777777733333554444 66777777754432 222 22355666667666 3332221 223
Q ss_pred ccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCC
Q 041089 294 RINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIP 373 (713)
Q Consensus 294 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 373 (713)
+..+..+++|++|++++|.++.. .....+..+++|+.|++++| +.+.....+
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l---------------------- 333 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDY-IEDAGLEVL---------------------- 333 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHH----------------------
T ss_pred HHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCc-cCHHHHHHH----------------------
Confidence 33333456666666666654321 12223445566666666655 221111111
Q ss_pred ccccCCCCCCEEecc---------CCcccccCCcccc-cccccceeecccccccccCCcccc-CCCCCCEEEcc--C---
Q 041089 374 PEIRNLFNLNGLGLE---------YNQLTGTIPPAIG-ELRNLQYLGLVGNNIRGIIPDSIG-NLTLLNILQLG--F--- 437 (713)
Q Consensus 374 ~~~~~l~~L~~L~L~---------~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~--- 437 (713)
...+++|++|+++ .+.+++.....+. .+++|++|++..|.+++.....+. .+++|+.|+++ +
T Consensus 334 --~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 334 --ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp --HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred --HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 1224445555442 2233322112222 356666666665655544333332 35666666666 2
Q ss_pred -Ccccc-----cCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCcccc-CCCCCcEEeCCC
Q 041089 438 -NKLQG-----SIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVG-NLKSLVQLDISR 510 (713)
Q Consensus 438 -n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~-~l~~L~~L~Ls~ 510 (713)
+.++. .++..+..+++|++|++++ .+++. .+..+. .+++|++|++++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~-------------------------~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK-------------------------VFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH-------------------------HHHHHHHHCTTCCEEEEES
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC-cccHH-------------------------HHHHHHHhchhccEeeccC
Confidence 33331 1112245566677666654 33211 111222 256677777777
Q ss_pred CcCCccCcccC-cCCCCCceeeCcCCcccccCCc-ccccCCCCCEEeCCCCcccccCCccC-CCCCCCCEEeCCCccC
Q 041089 511 NHFSNEIPVTL-SACTTLEYLLMQGNSFNGSIPQ-SLNALKSIKELDLSCNNLSGQIPIHL-QDLPFLEYLNLSYNHF 585 (713)
Q Consensus 511 n~l~~~~p~~~-~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~n~l 585 (713)
|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+..
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 77765544444 5577777777777777554333 33456778888888887754333333 3456666555555443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.4e-28 Score=273.11 Aligned_cols=462 Identities=14% Similarity=0.094 Sum_probs=294.8
Q ss_pred CCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCc---cC------------chhhhccCCC
Q 041089 46 NLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHG---QI------------PKEVGRLFRL 110 (713)
Q Consensus 46 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~------------p~~~~~l~~L 110 (713)
-|++|.++... ....+++..+... .....+.++++|++|+++++.... .. +.....+++|
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 35579988322 2345566554322 122456788999999999975321 11 1224578999
Q ss_pred CeeeecCCCCcccCCcccc-CCCCCcEEEccCC-ccccc-cchhhcCcCCCCEEeccCccccccCccccc----CCCCCc
Q 041089 111 ETIVLSNNSFSGKIPTNLS-RCFNLIDFWVHTN-NLVGE-IQAIIGNWLKLERLSLYDNQLTGQLRPSIG----NLSALQ 183 (713)
Q Consensus 111 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~ 183 (713)
++|+|++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+.++. .+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 9999999999887777776 7999999999999 44443 455566899999999999998875554444 677999
Q ss_pred EEEccCCC--CCC-CCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC-------CcccCCccccCCCC
Q 041089 184 TFDIAGNK--LDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR-------FKGSLPVCLGFNLP 253 (713)
Q Consensus 184 ~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~p~~~~~~l~ 253 (713)
+|++++|. +.. .++..+.++++|++|++++|...+.++..+..+++|++|++..+. +. .++..+. +++
T Consensus 188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~-~~~ 265 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALS-GCK 265 (594)
T ss_dssp EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHH-TCT
T ss_pred EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHh-cCC
Confidence 99999997 221 112223457999999999994433477788899999999976553 23 2333444 889
Q ss_pred CCCEE-eCCCCcCcccCCccCcCCCCCcEEeccCcccccccc-cccCCCCCCCeEEcCCCcccCcCCCCccccccccCCC
Q 041089 254 KLTVL-VVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVR-INFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCS 331 (713)
Q Consensus 254 ~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 331 (713)
+|+.+ .+.+... ..++..+..+++|+.|++++|.+++... ..+..+++|++|++++| +.. ..+......++
T Consensus 266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~l~~l~~~~~ 338 (594)
T 2p1m_B 266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AGLEVLASTCK 338 (594)
T ss_dssp TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHHHCT
T ss_pred CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HHHHHHHHhCC
Confidence 99999 4443332 3455555678999999999999765432 23568899999999987 332 12333344688
Q ss_pred CCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccc-cCCCCCCEEeccCCcccccCCcccc-ccccccee
Q 041089 332 KLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEI-RNLFNLNGLGLEYNQLTGTIPPAIG-ELRNLQYL 409 (713)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L 409 (713)
+|++|++..+.-.| ....+.+++.....+ ..+++|++|++..|.+++..+..+. .+++|++|
T Consensus 339 ~L~~L~L~~~~~~g----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 339 DLRELRVFPSEPFV----------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp TCCEEEEECSCTTC----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEEecCcccc----------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 99999985532100 000111111111111 2356666776666666654444443 46777777
Q ss_pred ecc--c----cccccc-----CCccccCCCCCCEEEccCCcccccCChhhhc-CCCCcEEeCCCCCCCCCCCccccCccc
Q 041089 410 GLV--G----NNIRGI-----IPDSIGNLTLLNILQLGFNKLQGSIPSYLGK-CQNLMQLSAPNNQLNGTLPPQIFGITP 477 (713)
Q Consensus 410 ~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~ 477 (713)
+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~------ 475 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH------ 475 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH------
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH------
Confidence 776 2 334311 112245677888888866 555544445554 777888887777664211110
Q ss_pred ccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcc-cCcCCCCCceeeCcCCcccccCCccc-ccCCCCCEEe
Q 041089 478 LSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPV-TLSACTTLEYLLMQGNSFNGSIPQSL-NALKSIKELD 555 (713)
Q Consensus 478 l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~ls~n~l~~~~~~~l-~~l~~L~~L~ 555 (713)
....+++|++|++++|.+++.... .+..+++|+.|++++|.++......+ ..+++|+...
T Consensus 476 ------------------l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 476 ------------------VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp ------------------HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ------------------HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 113466788888888887654333 33457788888888888755444444 4567776666
Q ss_pred CCCCccc
Q 041089 556 LSCNNLS 562 (713)
Q Consensus 556 Ls~N~l~ 562 (713)
+..+.-.
T Consensus 538 ~~~~~~~ 544 (594)
T 2p1m_B 538 IDERGAP 544 (594)
T ss_dssp ECSSSCG
T ss_pred ecCCCcc
Confidence 6655443
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.1e-25 Score=220.63 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=154.0
Q ss_pred CCCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccC
Q 041089 45 INLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKI 124 (713)
Q Consensus 45 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 124 (713)
.++|.|.|+.|.- ...++.++++++.++. +|..+. ++|++|+|++|++++..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999864 2456789999998886 454444 67899999999988766678888899999999998888555
Q ss_pred CccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCC
Q 041089 125 PTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLR 204 (713)
Q Consensus 125 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 204 (713)
+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567788888888888877766666677777777777777777766666677777777777777777755455566677
Q ss_pred CCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEec
Q 041089 205 NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLEL 284 (713)
Q Consensus 205 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 284 (713)
+|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+.|++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDK-------------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTT-------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccceeEecCCcCcEeChhHhcc-------------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 7777777776666544444444 455555555555555444445566666666666
Q ss_pred cCccccc
Q 041089 285 NENHFSG 291 (713)
Q Consensus 285 ~~n~l~~ 291 (713)
++|.+..
T Consensus 213 ~~N~~~c 219 (270)
T 2o6q_A 213 QENPWDC 219 (270)
T ss_dssp CSSCBCC
T ss_pred cCCCeeC
Confidence 6666543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-26 Score=246.34 Aligned_cols=242 Identities=19% Similarity=0.166 Sum_probs=177.9
Q ss_pred cccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEcc
Q 041089 357 TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLG 436 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 436 (713)
+++.|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 67777777777777666777788888888888888776554 7777888888888887774432 2778888888
Q ss_pred CCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCcccc-CCCCCcEEeCCCCcCCc
Q 041089 437 FNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVG-NLKSLVQLDISRNHFSN 515 (713)
Q Consensus 437 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 515 (713)
+|.+++..+. .+++|++|++++|.+.+..|..+..+..+. .|++++|.+++..|..+. .+++|++|+|++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 8887765443 357788888888888766666666666554 788888888877777775 78899999999999886
Q ss_pred cCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcc-cCCCC-C
Q 041089 516 EIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG-EVPKK-G 593 (713)
Q Consensus 516 ~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~-~~p~~-~ 593 (713)
. | ....+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.+ .+|.. .
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 5 3 23458899999999999986544 58888999999999999985 67778888999999999999873 33321 2
Q ss_pred CCCCCCccccc-------CCCCCCCCC
Q 041089 594 VFSNETRISLT-------GNEQLCGGL 613 (713)
Q Consensus 594 ~~~~l~~~~~~-------~n~~lc~~~ 613 (713)
..+.+..+.+. +++..|...
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred hCCCCcEEeccccccccCCCcccccCC
Confidence 23333444443 667777553
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.3e-24 Score=232.89 Aligned_cols=265 Identities=23% Similarity=0.261 Sum_probs=136.2
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEec
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSL 163 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 163 (713)
..+++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l--------------- 96 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-L--------------- 96 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-C---------------
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-C---------------
Confidence 35788888888877 6666554 67778888877777 4443 34555555555555442 2
Q ss_pred cCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCccc
Q 041089 164 YDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGS 243 (713)
Q Consensus 164 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 243 (713)
|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.++ .
T Consensus 97 ---------p~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~ 155 (622)
T 3g06_A 97 ---------PV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-S 155 (622)
T ss_dssp ---------CC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred ---------CC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-C
Confidence 22 33444444444444442 222 23444444444444442 2211 234444444444444 2
Q ss_pred CCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcCCCCccc
Q 041089 244 LPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDF 323 (713)
Q Consensus 244 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (713)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++. |. ..++|+.|++++|.++.
T Consensus 156 l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-------- 215 (622)
T 3g06_A 156 LPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-------- 215 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--------
T ss_pred cCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc--------
Confidence 332 23456666666666664 33 3345666666666665532 11 12444444444444332
Q ss_pred cccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccc
Q 041089 324 ITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGEL 403 (713)
Q Consensus 324 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 403 (713)
+|. .+++|++|++++|.+++ +| ..+
T Consensus 216 ------------------------------------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 216 ------------------------------------------------LPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp ------------------------------------------------CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred ------------------------------------------------cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 111 12345555555555553 23 234
Q ss_pred cccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccc
Q 041089 404 RNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQI 472 (713)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 472 (713)
++|++|++++|.++ .+|. .+++|++|++++|+++ .+|..+..+++|+.|++++|++.+..|..+
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 55566666666555 2333 3455666666666666 455566666666666666666655444433
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=216.69 Aligned_cols=210 Identities=23% Similarity=0.225 Sum_probs=145.6
Q ss_pred CCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCC
Q 041089 381 NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAP 460 (713)
Q Consensus 381 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~ 460 (713)
+|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45566666665555544455555666666666665555544555556666666666666655555555556666666666
Q ss_pred CCCCCCCCCccccCcccccchhcccCCcCCC-CCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCc----eeeCcCC
Q 041089 461 NNQLNGTLPPQIFGITPLSKLLDLSENHFSG-SIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLE----YLLMQGN 535 (713)
Q Consensus 461 ~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~----~L~ls~n 535 (713)
+|++.+..+..+..+..+ +.|++++|.+.+ .+|..+..+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666553333334444433 256666666654 3577888899999999999999987777777777776 8999999
Q ss_pred cccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCC
Q 041089 536 SFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKK 592 (713)
Q Consensus 536 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 592 (713)
.+++..+..+.. .+|+.|++++|++++..+..+..+++|++|++++|++.|.+|..
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 999766665544 58999999999999777777889999999999999999988754
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-25 Score=240.30 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=185.0
Q ss_pred ECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccc
Q 041089 66 DLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLV 145 (713)
Q Consensus 66 ~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 145 (713)
+++...+...+......+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+.
T Consensus 16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 334444443333344455689999999999988888889999999999999999887665 888888999999888887
Q ss_pred cccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCccccc
Q 041089 146 GEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVC 225 (713)
Q Consensus 146 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 225 (713)
+..+ .++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+.
T Consensus 94 ~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 94 ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 6443 37888888888888865543 457888888888888877777888888888888888888887777775
Q ss_pred -CCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCC
Q 041089 226 -NISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLS 304 (713)
Q Consensus 226 -~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 304 (713)
.+++|+.|++++|.+++. |... .+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp GGTTTCCEEECTTSCCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred hhCCcccEEecCCCccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 678888888888887754 3222 47788888888888886444 47777888888888888875 455677777788
Q ss_pred eEEcCCCcccCcCCCCccccccccCCCCCcEEee
Q 041089 305 KLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGL 338 (713)
Q Consensus 305 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l 338 (713)
.|++++|.+... ..+..+..++.|+.+++
T Consensus 241 ~L~l~~N~l~c~-----~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 241 HFDLRGNGFHCG-----TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp EEECTTCCBCHH-----HHHHHHTTCHHHHHHHH
T ss_pred EEEcCCCCCcCc-----chHHHHHhCCCCcEEec
Confidence 888877776521 23334444444544444
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.9e-24 Score=211.10 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=140.6
Q ss_pred CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEec
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSL 163 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 163 (713)
++|++|++++|++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888766667888888888888888888666667778888888888888877777777777888888888
Q ss_pred cCccccccCcccccCCCCCcEEEccCCCCCC-CCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcc
Q 041089 164 YDNQLTGQLRPSIGNLSALQTFDIAGNKLDG-RIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKG 242 (713)
Q Consensus 164 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 242 (713)
++|.+++..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 8888776666667778888888888887775 3577777777777777777777766555554443333
Q ss_pred cCCccccCCCCCCC-EEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccC
Q 041089 243 SLPVCLGFNLPKLT-VLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGT 315 (713)
Q Consensus 243 ~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 315 (713)
.+. .|++++|.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 177 -----------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 177 -----------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -----------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -----------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 121 444444444433332222 2255555555555555444445555666666666665543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4e-23 Score=205.37 Aligned_cols=206 Identities=22% Similarity=0.249 Sum_probs=145.8
Q ss_pred cccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEcc
Q 041089 357 TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLG 436 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 436 (713)
..+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4556666666665 3444332 456666666666665555556666666666666666664444445556666666666
Q ss_pred CCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCcc
Q 041089 437 FNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNE 516 (713)
Q Consensus 437 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 516 (713)
+|.+++..+..+..+++|++|++++|++ ++..+..+..+++|++|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQL-------------------------KSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCcc-------------------------CeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 6666544444555555555555555544 444455677888999999999999876
Q ss_pred CcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 517 IPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 517 ~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
.+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 66678889999999999999988777788889999999999999997777778889999999999999987765
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.4e-23 Score=206.05 Aligned_cols=206 Identities=23% Similarity=0.236 Sum_probs=156.2
Q ss_pred ccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCc
Q 041089 376 IRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLM 455 (713)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 455 (713)
+..++++++++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677777777777777 3444442 5777788888877777677777778888888888777754332 5677788
Q ss_pred EEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCC
Q 041089 456 QLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGN 535 (713)
Q Consensus 456 ~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n 535 (713)
+|++++|++. .+|..+..+..+. .|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~-~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALT-VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCC-EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCC-EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888887776 6666655555553 7777777777666677888888899999998888777777788888899999999
Q ss_pred cccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccC
Q 041089 536 SFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEV 589 (713)
Q Consensus 536 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 589 (713)
++++..+..|..+++|+.|+|++|+++ .+|..+...++|+++++++|++.+.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 888666667788888999999999888 67777777888888888888887754
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=206.75 Aligned_cols=207 Identities=20% Similarity=0.239 Sum_probs=97.0
Q ss_pred CCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEE
Q 041089 82 NLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERL 161 (713)
Q Consensus 82 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 161 (713)
.+++|++|++++|.+. .+ ..+..+++|++|++++|.+++ ...+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3444444444444443 11 124444444444444444442 1234444444444444444444444444444444444
Q ss_pred eccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCc
Q 041089 162 SLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFK 241 (713)
Q Consensus 162 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 241 (713)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 44444444444444444455555555555444433344444455555555555544444444444555555555555554
Q ss_pred ccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCC
Q 041089 242 GSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSL 300 (713)
Q Consensus 242 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 300 (713)
+..|..+. .+++|+.|++++|.+.+. +++|+.+++..|.++|.+|..++.+
T Consensus 195 ~~~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 32222222 455555555555544422 3455555666666666655555443
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.4e-23 Score=202.01 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=160.7
Q ss_pred CCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCC
Q 041089 46 NLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 46 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
+||.|.|..|.. ..+.++++++.+.. +|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 588999999963 34578999998886 445454 689999999999998888889999999999999999998888
Q ss_pred ccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCC
Q 041089 126 TNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRN 205 (713)
Q Consensus 126 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 205 (713)
..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998888888888999999999999998777777888899999999999888666667888888
Q ss_pred CCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCccc
Q 041089 206 LNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGS 243 (713)
Q Consensus 206 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 243 (713)
|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999998888877777777777777777777776643
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6e-23 Score=204.28 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=171.9
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+++++.+... +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 5688888888887753 468888899999999988875 3 47888889999999999888777777888899999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 99988887777788888999999999988877777788889999999999988877777788888999999999988888
Q ss_pred CcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCC
Q 041089 220 FPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASK 278 (713)
Q Consensus 220 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 278 (713)
.+..+..+++|+.|++++|.+.+ .+++|+.+++..|.++|.+|.+++.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 77778888899999998887764 4567888888888888888888776543
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.3e-25 Score=227.15 Aligned_cols=268 Identities=17% Similarity=0.208 Sum_probs=161.3
Q ss_pred CCCCccccccCCCCCcEEEEECCCCCcceecCccccCC--CCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCccc
Q 041089 46 NLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNL--SFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGK 123 (713)
Q Consensus 46 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 123 (713)
-|.+|.++.|++ ..++.+|++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 456799999864 45778888887766 3455666 7788888888877765554 45677777777777777654
Q ss_pred -CCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCc-ccccc-CcccccCCCCCcEEEccCC-CCCCC-CCc
Q 041089 124 -IPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN-QLTGQ-LRPSIGNLSALQTFDIAGN-KLDGR-IPD 198 (713)
Q Consensus 124 -~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~ 198 (713)
+|..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 6666667777777777777776666666666777777777776 45542 4555666677777777766 66532 344
Q ss_pred cccCCC-CCCEEeCCCC--cCc-CCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCc-CcccCCccC
Q 041089 199 SLGQLR-NLNYLGTSEN--DFS-GMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNN-LTGFLPQSL 273 (713)
Q Consensus 199 ~l~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 273 (713)
.+..++ +|++|++++| .++ +.+|..+. .+++|+.|++++|. +++..+..+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-------------------------~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVR-------------------------RCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-------------------------HCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHh-------------------------hCCCCCEEeCCCCCcCCHHHHHHH
Confidence 555666 6666666666 233 22333333 44555555555555 444444455
Q ss_pred cCCCCCcEEeccCcc-cccccccccCCCCCCCeEEcCCCcccCcCCCCccccccccCCCCCcEEeeeccccccccChhhh
Q 041089 274 SNASKLEWLELNENH-FSGQVRINFNSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIA 352 (713)
Q Consensus 274 ~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 352 (713)
..+++|++|++++|. +.......+..+++|+.|++++| ++. .....+. ..++.|++++|.+++..|..+.
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~------~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD------GTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT------TCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH------HHHHHHH--hhCcceEEecccCccccCCccc
Confidence 555666666666653 22111223555666666666666 221 1111111 2244455677777777666554
Q ss_pred h
Q 041089 353 N 353 (713)
Q Consensus 353 ~ 353 (713)
.
T Consensus 315 ~ 315 (336)
T 2ast_B 315 N 315 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.6e-22 Score=201.07 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=109.2
Q ss_pred ccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCC
Q 041089 80 IGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLE 159 (713)
Q Consensus 80 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 159 (713)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556666777777777666 4454443 4666666666666655556666666666666666665543322 4556666
Q ss_pred EEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC
Q 041089 160 RLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239 (713)
Q Consensus 160 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 239 (713)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 445555666666666666666665444556666666666666666554444444444445555444444
Q ss_pred CcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcc
Q 041089 240 FKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENH 288 (713)
Q Consensus 240 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 288 (713)
++ .+|...+..+++|+.|++++|+++ .+|..+....+|+.+++++|.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44 333333223444444444444444 233333333344444444433
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.8e-24 Score=220.15 Aligned_cols=266 Identities=16% Similarity=0.126 Sum_probs=155.1
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCc----hhhhccC-CCCeeeecCCCCcccCCccccCC-----CCC
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIP----KEVGRLF-RLETIVLSNNSFSGKIPTNLSRC-----FNL 134 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L 134 (713)
++++.+.+++.++..+...++|++|||++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888777666666678888888888876666 6677777 78888888888887766666654 778
Q ss_pred cEEEccCCccccccchhhcC----c-CCCCEEeccCccccccCccccc----C-CCCCcEEEccCCCCCCCC----Cccc
Q 041089 135 IDFWVHTNNLVGEIQAIIGN----W-LKLERLSLYDNQLTGQLRPSIG----N-LSALQTFDIAGNKLDGRI----PDSL 200 (713)
Q Consensus 135 ~~L~l~~n~~~~~~~~~l~~----l-~~L~~L~Ls~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~----~~~l 200 (713)
++|++++|.+.+..+..+.. + ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888877666654433 3 6778888888877765554433 2 357777777777776433 2333
Q ss_pred cCCC-CCCEEeCCCCcCcCCCccccc----CC-CcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCc
Q 041089 201 GQLR-NLNYLGTSENDFSGMFPLSVC----NI-SSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLS 274 (713)
Q Consensus 201 ~~l~-~L~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 274 (713)
..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.+++.-.. .++..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------------------~l~~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------------------ELAYIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------------------HHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------------------HHHHHHh
Confidence 4444 677777777776655544332 22 3555555555555431111 0122222
Q ss_pred C-CCCCcEEeccCcccccccc----cccCCCCCCCeEEcCCCcccCcCCCC-ccccccccCCCCCcEEeeeccccccccC
Q 041089 275 N-ASKLEWLELNENHFSGQVR----INFNSLPNLSKLYLGRNNLGTRTSTD-LDFITLLTNCSKLVKLGLVFNRFGGALP 348 (713)
Q Consensus 275 ~-l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 348 (713)
. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+....... ..+...+..+++|+.|++++|.+.+..+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 2345555555554443322 22344455555555555433221110 0122334455666666666666655544
Q ss_pred hhh
Q 041089 349 HSI 351 (713)
Q Consensus 349 ~~~ 351 (713)
..+
T Consensus 302 ~~~ 304 (362)
T 3goz_A 302 IPI 304 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.1e-23 Score=213.90 Aligned_cols=257 Identities=18% Similarity=0.243 Sum_probs=189.5
Q ss_pred CCCCEEECCCCCCCccCchhhhcc--CCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccc-cchhhcCcCCCCE
Q 041089 84 SFLRVINLANNRFHGQIPKEVGRL--FRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGE-IQAIIGNWLKLER 160 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~ 160 (713)
..++.++++++.+. |..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34789999998876 5677777 8999999999998866554 55788888888888887765 7777788888888
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCC-CCCC-CCCccccCCCCCCEEeCCCC-cCcCCCcccccCCCcceEEEccC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGN-KLDG-RIPDSLGQLRNLNYLGTSEN-DFSGMFPLSVCNISSLDEAYLFK 237 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~ 237 (713)
|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------ 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------ 184 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence 888888877777777777788888888777 4553 24445556666666666666 55432
Q ss_pred CCCcccCCccccCCCC-CCCEEeCCCC--cCc-ccCCccCcCCCCCcEEeccCcc-cccccccccCCCCCCCeEEcCCCc
Q 041089 238 NRFKGSLPVCLGFNLP-KLTVLVVAQN--NLT-GFLPQSLSNASKLEWLELNENH-FSGQVRINFNSLPNLSKLYLGRNN 312 (713)
Q Consensus 238 n~l~~~~p~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 312 (713)
.++..+. .++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus 185 -----~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 185 -----HVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp -----HHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred -----HHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 1222222 566 7777777777 444 3456677889999999999999 777777788999999999999995
Q ss_pred -ccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccC
Q 041089 313 -LGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRN 378 (713)
Q Consensus 313 -l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 378 (713)
+.. .....+..+++|+.|++++| ++.. .+..+...+..|++++|.+++..|..++.
T Consensus 259 ~~~~------~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 259 DIIP------ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCCG------GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCH------HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 221 23346778999999999998 4432 23333335788889999999999887764
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=221.17 Aligned_cols=236 Identities=20% Similarity=0.259 Sum_probs=116.9
Q ss_pred ccccCCCCCCEEECCCCCCCccCc----hhhhccCCCCeeeecCC---CCcccCCccc-------cCCCCCcEEEccCCc
Q 041089 78 PYIGNLSFLRVINLANNRFHGQIP----KEVGRLFRLETIVLSNN---SFSGKIPTNL-------SRCFNLIDFWVHTNN 143 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~l~~n~ 143 (713)
..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 445555666666666666554322 22445666666666654 3334444433 455566666666665
Q ss_pred ccc----ccchhhcCcCCCCEEeccCccccccCccccc----CC---------CCCcEEEccCCCCC-CCCC---ccccC
Q 041089 144 LVG----EIQAIIGNWLKLERLSLYDNQLTGQLRPSIG----NL---------SALQTFDIAGNKLD-GRIP---DSLGQ 202 (713)
Q Consensus 144 ~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~---~~l~~ 202 (713)
+.+ .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ ..++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 555 3455555566666666666655433222222 22 56666666666554 2222 24445
Q ss_pred CCCCCEEeCCCCcCcC-----CCcccccCCCcceEEEccCCCCc----ccCCccccCCCCCCCEEeCCCCcCccc----C
Q 041089 203 LRNLNYLGTSENDFSG-----MFPLSVCNISSLDEAYLFKNRFK----GSLPVCLGFNLPKLTVLVVAQNNLTGF----L 269 (713)
Q Consensus 203 l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~L~~n~l~~~----~ 269 (713)
+++|++|++++|.+.. ..|..+..+++|+.|++++|.++ +.+|..+. .+++|+.|++++|.+++. +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHH
Confidence 5556666666655541 22224445555555555555553 33443333 445555555555555433 2
Q ss_pred CccCc--CCCCCcEEeccCccccc----cccccc-CCCCCCCeEEcCCCccc
Q 041089 270 PQSLS--NASKLEWLELNENHFSG----QVRINF-NSLPNLSKLYLGRNNLG 314 (713)
Q Consensus 270 ~~~l~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~ 314 (713)
+..+. .+++|+.|++++|.+++ .++..+ ..+++|+.|++++|.++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 33332 24555555555555544 233333 33444555555444443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=204.00 Aligned_cols=203 Identities=20% Similarity=0.240 Sum_probs=128.7
Q ss_pred cccEEEccCCceeecCCccc--cCCCCCCEEeccCCcccccCC----cccccccccceeecccccccccCCccccCCCCC
Q 041089 357 TMTLIAMAGNQISGTIPPEI--RNLFNLNGLGLEYNQLTGTIP----PAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLL 430 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 430 (713)
++++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46666666666666666655 566666666666666665433 223345666666666666665555566666666
Q ss_pred CEEEccCCccccc--C--ChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCc-cccCCCCCcE
Q 041089 431 NILQLGFNKLQGS--I--PSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQ 505 (713)
Q Consensus 431 ~~L~Ls~n~l~~~--~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~ 505 (713)
++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+. .+..+++|++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~----------------------~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTG----------------------VCAALAAAGVQPHS 228 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHH----------------------HHHHHHHHTCCCSS
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHH----------------------HHHHHHhcCCCCCE
Confidence 6666666655431 1 112234555555555555443 1110 011 2356678888
Q ss_pred EeCCCCcCCccCcccCcCC---CCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCC
Q 041089 506 LDISRNHFSNEIPVTLSAC---TTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSY 582 (713)
Q Consensus 506 L~Ls~n~l~~~~p~~~~~~---~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 582 (713)
|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|++|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 8888888887777777666 58888888888888 5676664 7888888888888864 33 56778888888888
Q ss_pred ccCcc
Q 041089 583 NHFEG 587 (713)
Q Consensus 583 n~l~~ 587 (713)
|+++.
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 88753
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.8e-22 Score=193.85 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=122.8
Q ss_pred CCCEEECCCCCCCccCchhhhccCCCCeeeecCCC-CcccCCccccCCCCCcEEEccC-CccccccchhhcCcCCCCEEe
Q 041089 85 FLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNS-FSGKIPTNLSRCFNLIDFWVHT-NNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 85 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 162 (713)
+|++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888887666678888888888888886 7755555677777777777776 777666666666777777777
Q ss_pred ccCccccccCcccccCCCCCc---EEEccCC-CCCCCCCccccCCCCCC-EEeCCCCcCcCCCcccccCCCcceEEEccC
Q 041089 163 LYDNQLTGQLRPSIGNLSALQ---TFDIAGN-KLDGRIPDSLGQLRNLN-YLGTSENDFSGMFPLSVCNISSLDEAYLFK 237 (713)
Q Consensus 163 Ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 237 (713)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.+.
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------------------- 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------------------- 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--------------------
Confidence 77777664 444 66666666 6666666 66544444566666666 6666666555
Q ss_pred CCCcccCCccccCCCCCCCEEeCCCCc-CcccCCccCcCC-CCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 238 NRFKGSLPVCLGFNLPKLTVLVVAQNN-LTGFLPQSLSNA-SKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 238 n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
.+|...+ ..++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 170 -----~i~~~~~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -----SVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp -----EECTTTT-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred -----ccCHhhc-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 3333332 12445555555552 554444455555 5666666666665533222 4455555555443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=199.50 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=159.7
Q ss_pred CCCCCEEECCCCCCCccCch---hhhccCCCCeeeecCCCCcccCCccc--cCCCCCcEEEccCCccccccc----hhhc
Q 041089 83 LSFLRVINLANNRFHGQIPK---EVGRLFRLETIVLSNNSFSGKIPTNL--SRCFNLIDFWVHTNNLVGEIQ----AIIG 153 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~ 153 (713)
...++.+++.++.+....-. .+..+++|++|++++|.+++..|..+ .++++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888877632111 23345779999999999998888888 889999999999999887544 3445
Q ss_pred CcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCC--C--CccccCCCCCCEEeCCCCcCcCCC--cc-cccC
Q 041089 154 NWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGR--I--PDSLGQLRNLNYLGTSENDFSGMF--PL-SVCN 226 (713)
Q Consensus 154 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~--~~-~~~~ 226 (713)
.+++|++|++++|.+++..+..+..+++|++|++++|++.+. + +..++.+++|++|++++|.++... +. .+.+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 788899999999988887778888888999999999887642 2 233467888888888888886321 11 2456
Q ss_pred CCcceEEEccCCCCcccCCccccCCC---CCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCC
Q 041089 227 ISSLDEAYLFKNRFKGSLPVCLGFNL---PKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNL 303 (713)
Q Consensus 227 l~~L~~L~l~~n~l~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 303 (713)
+++|++|++++|.+++..|..++ .+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 67777777777777766665554 33 57777777777777 4455553 5777777777777654 22 4566667
Q ss_pred CeEEcCCCccc
Q 041089 304 SKLYLGRNNLG 314 (713)
Q Consensus 304 ~~L~l~~n~l~ 314 (713)
+.|++++|.++
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 77777666654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.6e-22 Score=192.85 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=163.0
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCC-CCccCchhhhccCCCCeeeecC-CCCcccCCccccCCCCCcEE
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNR-FHGQIPKEVGRLFRLETIVLSN-NSFSGKIPTNLSRCFNLIDF 137 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L 137 (713)
..++.|+++++.+++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999999888899999999999999997 8877777899999999999999 99997777889999999999
Q ss_pred EccCCccccccchhhcCcCCCC---EEeccCc-cccccCcccccCCCCCc-EEEccCCCCCCCCCccccCCCCCCEEeCC
Q 041089 138 WVHTNNLVGEIQAIIGNWLKLE---RLSLYDN-QLTGQLRPSIGNLSALQ-TFDIAGNKLDGRIPDSLGQLRNLNYLGTS 212 (713)
Q Consensus 138 ~l~~n~~~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 212 (713)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999987 565 88888888 9999999 99987777899999999 9999999998 555544334788999999
Q ss_pred CCc-CcCCCcccccCC-CcceEEEccCCCCcccCCccccCCCCCCCEEeCCCC
Q 041089 213 END-FSGMFPLSVCNI-SSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQN 263 (713)
Q Consensus 213 ~n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n 263 (713)
+|. +.+..+..+..+ ++|++|++++|.++ .+|.. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 884 776666667666 67777777777666 44433 3455666655543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=218.36 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=141.1
Q ss_pred cccEEEccCCceeecCC----ccccCCC-CCCEEeccCCcccccCCcccccc-----cccceeecccccccccCCcc---
Q 041089 357 TMTLIAMAGNQISGTIP----PEIRNLF-NLNGLGLEYNQLTGTIPPAIGEL-----RNLQYLGLVGNNIRGIIPDS--- 423 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~--- 423 (713)
+++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 45555555555554433 4455555 66666666666665555555543 66666666666666544432
Q ss_pred -ccCC-CCCCEEEccCCcccccCChhhhc-----CCCCcEEeCCCCCCCCCCCcc----ccCcccccchhcccCCcCCCC
Q 041089 424 -IGNL-TLLNILQLGFNKLQGSIPSYLGK-----CQNLMQLSAPNNQLNGTLPPQ----IFGITPLSKLLDLSENHFSGS 492 (713)
Q Consensus 424 -~~~l-~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~l~~n~l~~~~~~~----~~~~~~l~~~l~ls~n~~~~~ 492 (713)
+..+ ++|++|++++|.+++..+..+.. +++|++|++++|++.+..+.. +......++.|++++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 2333 56666666666666544443332 246666777666665432222 222232334666666666655
Q ss_pred CCccc----cCC-CCCcEEeCCCCcCCcc----CcccCcC-CCCCceeeCcCCcccccCC----cccccCCCCCEEeCCC
Q 041089 493 IPLEV----GNL-KSLVQLDISRNHFSNE----IPVTLSA-CTTLEYLLMQGNSFNGSIP----QSLNALKSIKELDLSC 558 (713)
Q Consensus 493 ~~~~~----~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-~~~L~~L~ls~n~l~~~~~----~~l~~l~~L~~L~Ls~ 558 (713)
.+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 44333 334 5888888888888753 3444444 4588888888888876544 3345668888888888
Q ss_pred Cccccc-------CCccCCCCCCCCEEeCCCccCccc
Q 041089 559 NNLSGQ-------IPIHLQDLPFLEYLNLSYNHFEGE 588 (713)
Q Consensus 559 N~l~~~-------~p~~l~~l~~L~~L~ls~n~l~~~ 588 (713)
|.+.+. ++..+..+++|+.||+++|++...
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 884432 334567778888888888888755
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.9e-21 Score=188.04 Aligned_cols=181 Identities=21% Similarity=0.233 Sum_probs=139.0
Q ss_pred CCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCC
Q 041089 381 NLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAP 460 (713)
Q Consensus 381 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~ 460 (713)
+.++++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777776 3444443 567777777777776666667777777777777777776666666666677666666
Q ss_pred CCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCccccc
Q 041089 461 NNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGS 540 (713)
Q Consensus 461 ~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~ 540 (713)
+|++. +..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 66554 33445567788899999999999877777788899999999999999977
Q ss_pred CCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccC
Q 041089 541 IPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEV 589 (713)
Q Consensus 541 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 589 (713)
.+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 7778899999999999999999888888899999999999999998763
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.7e-23 Score=216.58 Aligned_cols=235 Identities=23% Similarity=0.292 Sum_probs=196.4
Q ss_pred CcEEEEECCCCCccee----cCccccCCCCCCEEECCCC---CCCccCchhh-------hccCCCCeeeecCCCCcc---
Q 041089 60 QRVTELDLESQNIGGF----LSPYIGNLSFLRVINLANN---RFHGQIPKEV-------GRLFRLETIVLSNNSFSG--- 122 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~Ls~n~l~~--- 122 (713)
.+++.|+|++|.+... ++..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5699999999999876 3345789999999999996 4556777665 689999999999999997
Q ss_pred -cCCccccCCCCCcEEEccCCccccccchhh----cCc---------CCCCEEeccCcccc-ccCc---ccccCCCCCcE
Q 041089 123 -KIPTNLSRCFNLIDFWVHTNNLVGEIQAII----GNW---------LKLERLSLYDNQLT-GQLR---PSIGNLSALQT 184 (713)
Q Consensus 123 -~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l---------~~L~~L~Ls~n~l~-~~~~---~~l~~l~~L~~ 184 (713)
.+|..+.++++|++|++++|.+....+..+ ..+ ++|++|++++|.++ +.++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 477788999999999999999976554444 444 89999999999997 3444 46778999999
Q ss_pred EEccCCCCCC-----CCCccccCCCCCCEEeCCCCcCc----CCCcccccCCCcceEEEccCCCCccc----CCcccc-C
Q 041089 185 FDIAGNKLDG-----RIPDSLGQLRNLNYLGTSENDFS----GMFPLSVCNISSLDEAYLFKNRFKGS----LPVCLG-F 250 (713)
Q Consensus 185 L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~ 250 (713)
|++++|.++. ..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999873 34448889999999999999996 66788899999999999999999865 455442 1
Q ss_pred CCCCCCEEeCCCCcCcc----cCCccC-cCCCCCcEEeccCcccccccc
Q 041089 251 NLPKLTVLVVAQNNLTG----FLPQSL-SNASKLEWLELNENHFSGQVR 294 (713)
Q Consensus 251 ~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~~ 294 (713)
.+++|+.|++++|.+++ .+|..+ .++++|+.|++++|.+++..+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 48999999999999997 477777 668999999999999987664
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.6e-21 Score=191.73 Aligned_cols=194 Identities=22% Similarity=0.314 Sum_probs=108.4
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 34556666666666655 233 455666666666666666532 22 55666666666666665542 24556666666
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 66666666542 2 25666666666666666653322 5566666666666666554322 55555555555555555
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCccccc
Q 041089 241 KGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSG 291 (713)
Q Consensus 241 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 291 (713)
++ ++. +. .+++|+.|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 186 ~~-~~~-l~-~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SD-ISP-LA-SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CGG-GG-GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Cc-Chh-hc-CCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 42 222 22 4556666666666665433 25556666666666666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.8e-21 Score=193.30 Aligned_cols=193 Identities=26% Similarity=0.356 Sum_probs=123.0
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEE
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 457 (713)
.+++|++|++++|.+.. ++ .+..+++|++|++++|++.+..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 34455555555555543 22 34555555555555555553322 55555555555555555432 245555555555
Q ss_pred eCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcc
Q 041089 458 SAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSF 537 (713)
Q Consensus 458 ~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l 537 (713)
++++|++.+ ++. +..+..+ +.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-chh-hcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 555555542 322 3333333 255666666554332 6778888999999998886433 78888999999999988
Q ss_pred cccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcc
Q 041089 538 NGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 538 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 86543 7888899999999999886553 7888899999999998875
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.4e-21 Score=208.99 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=147.8
Q ss_pred CCCCCCCCCC-----Ccccc-ccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCe
Q 041089 39 KSWNNSINLC-----QWTGV-TCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLET 112 (713)
Q Consensus 39 ~~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 112 (713)
.+|..+.++| .|.|+ .|.. .+++.|+|+++.+++ +|..+. ++|++|+|++|+++ .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 4565556677 69999 7864 579999999999988 666553 88999999999998 677 55789999
Q ss_pred eeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCC
Q 041089 113 IVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKL 192 (713)
Q Consensus 113 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 192 (713)
|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 9999999986 776 655 88888888888877 444 56778888888888775 444 567788888888877
Q ss_pred CCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCcc
Q 041089 193 DGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQS 272 (713)
Q Consensus 193 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 272 (713)
++ +|. +. ++|++|++++|.++ .+|. +.. +| ....+.|+.|++++|.++ .+|..
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------HHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CCCGG
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh------------------hcccccceEEecCCCcce-ecCHH
Confidence 74 565 54 77777777777776 4443 332 33 001223366666666665 35555
Q ss_pred CcCCCCCcEEeccCcccccccccccCC
Q 041089 273 LSNASKLEWLELNENHFSGQVRINFNS 299 (713)
Q Consensus 273 l~~l~~L~~L~l~~n~l~~~~~~~l~~ 299 (713)
+..+++|+.|++++|.+++..|..+..
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 555666666666666666666555443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.1e-21 Score=181.17 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=119.5
Q ss_pred CCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCC
Q 041089 46 NLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 46 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
..|.|.++.|... .+.. +|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 5 C~C~~~~v~c~~~------------~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQ------------GRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSS------------CCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCC------------CccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 3488999999752 1221 22222 3578888888888886666677888888888888888885555
Q ss_pred ccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCC
Q 041089 126 TNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRN 205 (713)
Q Consensus 126 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 205 (713)
..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 55677777777777777777666666677777777777777777655555667777777777777776555555666666
Q ss_pred CCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccc
Q 041089 206 LNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCL 248 (713)
Q Consensus 206 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 248 (713)
|++|++++|.+.+ .+++|+.|+++.|.++|.+|..+
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence 7777666665442 23344444455555555554433
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.8e-20 Score=174.80 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=139.3
Q ss_pred CEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCc
Q 041089 87 RVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDN 166 (713)
Q Consensus 87 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 166 (713)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56788888777 555444 458999999999998766667888899999999999888777777788888888888888
Q ss_pred cccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCc
Q 041089 167 QLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPV 246 (713)
Q Consensus 167 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 246 (713)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8887666667888888888888888886666667888888888888888887666667777777777777776553
Q ss_pred cccCCCCCCCEEeCCCCcCcccCCccCcCCCC
Q 041089 247 CLGFNLPKLTVLVVAQNNLTGFLPQSLSNASK 278 (713)
Q Consensus 247 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 278 (713)
.+++|+.|+++.|+++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4456667777777777777766655443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=9.6e-20 Score=188.20 Aligned_cols=243 Identities=15% Similarity=0.074 Sum_probs=166.1
Q ss_pred CCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCc-
Q 041089 48 CQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPT- 126 (713)
Q Consensus 48 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~- 126 (713)
|.|..|.|+. ++++. +|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|.
T Consensus 9 C~~~~v~C~~------------~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEES------------TTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecC------------CCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 6777777754 23332 34444 36789999999999865566789999999999999998766654
Q ss_pred cccCCCCCcE-EEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccC-CCCCCCCCccccCCC
Q 041089 127 NLSRCFNLID-FWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAG-NKLDGRIPDSLGQLR 204 (713)
Q Consensus 127 ~l~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~ 204 (713)
.|.+++++++ +.+..|++....|..|..+++|++|++++|.++...+..+....++.+|++.+ +.+....+..|..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 5788888765 55667888888888888899999999999988876666677777888888865 456544445566654
Q ss_pred -CCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEe
Q 041089 205 -NLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLE 283 (713)
Q Consensus 205 -~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 283 (713)
.++.|++++|.++. +|.......+|+++++.+++..+.+|...+..+++|++|++++|+++...+.. +.+|+.|.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEE
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhh
Confidence 57888888888874 44444455677888877654444777666557777777777777777543333 33444554
Q ss_pred ccCcccccccccccCCCCCCCeEEcCC
Q 041089 284 LNENHFSGQVRINFNSLPNLSKLYLGR 310 (713)
Q Consensus 284 l~~n~l~~~~~~~l~~l~~L~~L~l~~ 310 (713)
+.++.--..+| .+..+++|+.+++++
T Consensus 230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hccCCCcCcCC-CchhCcChhhCcCCC
Confidence 44332222333 255566666666554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-19 Score=185.50 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=149.0
Q ss_pred EEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCC-cccccccccce-eecc
Q 041089 335 KLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIP-PAIGELRNLQY-LGLV 412 (713)
Q Consensus 335 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~ 412 (713)
.++.++++++ .+|..+ +.+++.|++++|+++...+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3445555554 445433 2367777777777775555567788888888888888765444 45677777665 5556
Q ss_pred cccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCC-CCCCCCCcc-ccCcccccchhcccCCcCC
Q 041089 413 GNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNN-QLNGTLPPQ-IFGITPLSKLLDLSENHFS 490 (713)
Q Consensus 413 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~~l~ls~n~~~ 490 (713)
.|+++...|..|..+++|++|++++|++....+..+....++..+++.++ ++. .++.. +......++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 67777776777788888888888888877655555666667777777653 443 44433 3333334446777777776
Q ss_pred CCCCccccCCCCCcEEeCCC-CcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccC
Q 041089 491 GSIPLEVGNLKSLVQLDISR-NHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHL 569 (713)
Q Consensus 491 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 569 (713)
. +|.......+|++|++++ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-...+| .+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 3 343444455677777764 4444333345677777777777777776433333 3455555555544444555 36
Q ss_pred CCCCCCCEEeCCCcc
Q 041089 570 QDLPFLEYLNLSYNH 584 (713)
Q Consensus 570 ~~l~~L~~L~ls~n~ 584 (713)
..+++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 667777777776544
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.7e-19 Score=194.06 Aligned_cols=186 Identities=24% Similarity=0.346 Sum_probs=114.8
Q ss_pred cccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEcc
Q 041089 357 TMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLG 436 (713)
Q Consensus 357 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 436 (713)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777765 55544 256777777777777 445 346777777777777775 555 443 77777777
Q ss_pred CCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCcc
Q 041089 437 FNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNE 516 (713)
Q Consensus 437 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 516 (713)
+|++++ +|. .+++|++|++++|++++ +|. .+ +.++.|++++|.+++ +|. +. ++|++|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777775 554 56777777777777763 554 12 222366666666664 444 44 56666666666666 4
Q ss_pred CcccCcCCCCC-------ceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCC
Q 041089 517 IPVTLSACTTL-------EYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQD 571 (713)
Q Consensus 517 ~p~~~~~~~~L-------~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 571 (713)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 444 433 55 66666666666 45555555666666666666666665555444
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.8e-19 Score=170.83 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=127.1
Q ss_pred CCCCCCCCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCC
Q 041089 40 SWNNSINLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNS 119 (713)
Q Consensus 40 ~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 119 (713)
.|..+.+.|.|.+|.|... .+.. +|..+. ++|++|+|++|++++..|..|..+++|++|+|++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccCC------------CcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 4555678899999999752 1222 333332 789999999999998888889999999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCcc
Q 041089 120 FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDS 199 (713)
Q Consensus 120 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 199 (713)
++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 97555566788888888888888888777777788888888888888887 66777788888888888888887655566
Q ss_pred ccCCCCCCEEeCCCCcCcCC
Q 041089 200 LGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 200 l~~l~~L~~L~l~~n~~~~~ 219 (713)
+..+++|+.|++++|.+.+.
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 77778888888887776654
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=9.5e-19 Score=167.46 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=127.6
Q ss_pred ceeecccccccccCCccccCCCCCCEEEccCCcccccCC-hhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhccc
Q 041089 407 QYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIP-SYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLS 485 (713)
Q Consensus 407 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls 485 (713)
+++++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|++.
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 57788888776 3555443 356778888887776544 34667777777766666654
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccC
Q 041089 486 ENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI 565 (713)
Q Consensus 486 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 565 (713)
+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..
T Consensus 71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 334456778889999999999999888888999999999999999999988999999999999999999999988
Q ss_pred CccCCCCCCCCEEeCCCccCcccCCC
Q 041089 566 PIHLQDLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 566 p~~l~~l~~L~~L~ls~n~l~~~~p~ 591 (713)
|..|..+++|++|++++|++.+.++.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999999999999999987764
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=2e-20 Score=210.98 Aligned_cols=232 Identities=21% Similarity=0.178 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHhCC-CCCCCCCCCCC-CCCCCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCE-----E
Q 041089 17 NEMDRLALLAIKSQLQ-DPLGVTKSWNN-SINLCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRV-----I 89 (713)
Q Consensus 17 ~~~~~~~ll~~k~~~~-~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~-----L 89 (713)
.+.++.+|+++..+.. +.......|.. ....+.|.++.++. .+++.|+|..+.+... +..+.....|+. +
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDED 206 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCc
Confidence 4567889999987764 22333445643 34567899888865 7899999999888774 333322222332 2
Q ss_pred ECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCcccc
Q 041089 90 NLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLT 169 (713)
Q Consensus 90 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 169 (713)
+++.|++. ..|..|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33334443 45778889999999999999998 78888889999999999999998 78888999999999999999998
Q ss_pred ccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCc-ceEEEccCCCCcccCCccc
Q 041089 170 GQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISS-LDEAYLFKNRFKGSLPVCL 248 (713)
Q Consensus 170 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~ 248 (713)
.+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 77888999999999999999987 77888999999999999999999888877655432 223667788887766643
Q ss_pred cCCCCCCCEEeCCCC
Q 041089 249 GFNLPKLTVLVVAQN 263 (713)
Q Consensus 249 ~~~l~~L~~L~L~~n 263 (713)
|+.|+++.|
T Consensus 361 ------l~~l~l~~n 369 (727)
T 4b8c_D 361 ------RRFIEINTD 369 (727)
T ss_dssp ---------------
T ss_pred ------cceeEeecc
Confidence 445555555
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.4e-18 Score=161.67 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=106.6
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCc-hhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIP-KEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
.++++++.++. +|..+. +.+++|+|++|++++..| ..|..+++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45666666665 444443 346788888888886644 45778888888888888888666667777777777777777
Q ss_pred ccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcC
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSG 218 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 218 (713)
.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777666667777777777777777776666667777777777777777766666666666666666666666554
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6e-18 Score=169.51 Aligned_cols=149 Identities=22% Similarity=0.341 Sum_probs=81.0
Q ss_pred ccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCC
Q 041089 80 IGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLE 159 (713)
Q Consensus 80 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 159 (713)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+. ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 3455666666666666653 22 35666666666666666664322 55666666666666655542 2255566666
Q ss_pred EEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCC
Q 041089 160 RLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNR 239 (713)
Q Consensus 160 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 239 (713)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666542 3455566666666666665532 345555555555555555554332 3334444444444333
Q ss_pred C
Q 041089 240 F 240 (713)
Q Consensus 240 l 240 (713)
+
T Consensus 190 i 190 (291)
T 1h6t_A 190 I 190 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.9e-18 Score=161.04 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=103.5
Q ss_pred CCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccc
Q 041089 68 ESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGE 147 (713)
Q Consensus 68 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 147 (713)
+++.+.. +|..+. ++|++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.++..
T Consensus 19 ~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 3344443 333333 6788888888888877777788888888888888888877777777777777777777777765
Q ss_pred cchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCc
Q 041089 148 IQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 148 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 217 (713)
.+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555667777777777777777666666777777777777777776555555666666666666666554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5.1e-18 Score=162.41 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=121.4
Q ss_pred ceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccC
Q 041089 407 QYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSE 486 (713)
Q Consensus 407 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~ 486 (713)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 56777777776 4555443 57777777777777666666777777776666666554
Q ss_pred CcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCC
Q 041089 487 NHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIP 566 (713)
Q Consensus 487 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 566 (713)
+..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 3445667778888999999998886666667888999999999999988888888889999999999999998877
Q ss_pred ccCCCCCCCCEEeCCCccCcccCC
Q 041089 567 IHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 567 ~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
..+..+++|++|++++|++.+.+.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 788888999999999999887654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.2e-18 Score=185.66 Aligned_cols=171 Identities=23% Similarity=0.344 Sum_probs=77.1
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..+++|+.|++++|.+. .+| .+..+++|++|+|++|.+++..| +..+++|+.|+|++|.+.+. +.+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34444444444444444 222 34444444444444444443222 44444444444444444431 13444444555
Q ss_pred EeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCC
Q 041089 161 LSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRF 240 (713)
Q Consensus 161 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 240 (713)
|+|++|.+.+. ..+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555544431 2344455555555555554432 334445555555555554444333 44444444444444444
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCc
Q 041089 241 KGSLPVCLGFNLPKLTVLVVAQNNLT 266 (713)
Q Consensus 241 ~~~~p~~~~~~l~~L~~L~L~~n~l~ 266 (713)
++ +| .+. .+++|+.|+|++|.+.
T Consensus 188 ~~-l~-~l~-~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SD-LR-ALA-GLKNLDVLELFSQECL 210 (605)
T ss_dssp CB-CG-GGT-TCTTCSEEECCSEEEE
T ss_pred CC-Ch-HHc-cCCCCCEEEccCCcCc
Confidence 42 22 122 4455555555555444
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.5e-20 Score=205.23 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=124.2
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCE
Q 041089 81 GNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLER 160 (713)
Q Consensus 81 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 160 (713)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|......|..+ ..+...+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 56677777777777776 667777777777777776553110111000 011133445555555555555
Q ss_pred Ee-ccCc-------------cccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccC
Q 041089 161 LS-LYDN-------------QLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCN 226 (713)
Q Consensus 161 L~-Ls~n-------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 226 (713)
|+ ++.| .++.. + ...|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+++
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred Ccchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 55 3433 33311 1 1247777777777774 565 777777777777777777 56667777
Q ss_pred CCcceEEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccC-CccCcCCCCCcEEeccCcccccccccc---cCCCCC
Q 041089 227 ISSLDEAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFL-PQSLSNASKLEWLELNENHFSGQVRIN---FNSLPN 302 (713)
Q Consensus 227 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~ 302 (713)
+++|+.|++++|.+++ +| .+. .+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+.. +..+++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 7777777777777764 55 443 6777777777777777665 677777777777777777776554422 223555
Q ss_pred CCeEE
Q 041089 303 LSKLY 307 (713)
Q Consensus 303 L~~L~ 307 (713)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 55554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.3e-17 Score=167.16 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=145.4
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+++++.+... +.+..+++|++|++++|++++..+ +.++++|++|++++|.+++ + +.+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence 5689999999999875 458999999999999999996544 9999999999999999985 3 34999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 219 (713)
++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99999874 5688999999999999999965 679999999999999999996544 99999999999999999864
Q ss_pred CcccccCCCcceEEEccCCCCc
Q 041089 220 FPLSVCNISSLDEAYLFKNRFK 241 (713)
Q Consensus 220 ~~~~~~~l~~L~~L~l~~n~l~ 241 (713)
+ .+..+++|+.|++++|.++
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEE
T ss_pred -h-hhccCCCCCEEECcCCccc
Confidence 3 3677777777777777665
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=159.59 Aligned_cols=156 Identities=22% Similarity=0.201 Sum_probs=125.4
Q ss_pred cceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhccc
Q 041089 406 LQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLS 485 (713)
Q Consensus 406 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls 485 (713)
.+.++.+++++. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++. .
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~------------------ 78 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-A------------------ 78 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-C------------------
Confidence 456777777776 5555443 77888888888888777777777777777777777664 2
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccC
Q 041089 486 ENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI 565 (713)
Q Consensus 486 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 565 (713)
..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..
T Consensus 79 ------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 79 ------LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred ------cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 22344567888999999999998777777888999999999999998 77888899999999999999999777
Q ss_pred CccCCCCCCCCEEeCCCccCcccCC
Q 041089 566 PIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 566 p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
+..+..+++|++|++++|++.+.++
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7788999999999999999988775
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=183.46 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=149.1
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
+..+..++++.+.+.+..+ +..+++|++|++++|.+.. +| .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345556677777764443 6788999999999999884 44 58889999999999999887665 88899999999
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcc
Q 041089 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKG 242 (713)
Q Consensus 163 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 242 (713)
|++|.+++ ++ .+..+++|++|+|++|.+.+ + +.+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999885 33 68889999999999998885 3 4588888999999999888865 567778888888888887775
Q ss_pred cCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccc
Q 041089 243 SLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQ 292 (713)
Q Consensus 243 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 292 (713)
..| +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hc-cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 544 33 677788888888777754 3577777777777777777654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=3.8e-18 Score=176.89 Aligned_cols=179 Identities=25% Similarity=0.226 Sum_probs=128.1
Q ss_pred CEEeccCCcccccCCcccccccccceeecccccccccCCcccc-CCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCC
Q 041089 383 NGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIG-NLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPN 461 (713)
Q Consensus 383 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~ 461 (713)
+.++++++.++. +|..+. +.+++|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888874 555443 4688899999988877777776 888899999999888877777788888888888888
Q ss_pred CCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccC
Q 041089 462 NQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSI 541 (713)
Q Consensus 462 n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~ 541 (713)
|++.+ ..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..
T Consensus 98 N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHT-------------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCCE-------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCc-------------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 77752 22334556677777777777777666677777777777777777777543
Q ss_pred Cccc---ccCCCCCEEeCCCCcccccCCccCCCCCC--CCEEeCCCccCcccC
Q 041089 542 PQSL---NALKSIKELDLSCNNLSGQIPIHLQDLPF--LEYLNLSYNHFEGEV 589 (713)
Q Consensus 542 ~~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~n~l~~~~ 589 (713)
+..| ..+++|+.|||++|++++..+..+..++. ++.|++++|++.+.+
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 3344 45777777777777777555555666665 367777777777654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=157.57 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=59.4
Q ss_pred CCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEE
Q 041089 82 NLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERL 161 (713)
Q Consensus 82 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 161 (713)
.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444444444444444 333 3444445555555544332 12234444444444444444444444444444444444
Q ss_pred eccCccccccCcccccCCCCCcEEEccCCC-CCCCCCccccCCCCCCEEeCCCCcCc
Q 041089 162 SLYDNQLTGQLRPSIGNLSALQTFDIAGNK-LDGRIPDSLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 162 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~ 217 (713)
++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 444444444444444444455555555444 22 222 3444444444444444444
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=173.43 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=131.2
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhh-ccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVG-RLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
.++++++.+.. +|..+. +.+++|+|++|++++..+..|. ++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45666666665 344443 4588899999998877777777 8889999999999888777778888888888888888
Q ss_pred ccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccc---cCCCCCCEEeCCCCcCcCC
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSL---GQLRNLNYLGTSENDFSGM 219 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~~~~~ 219 (713)
++.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.+.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8887777778888888888888888887778888888888888888888885333334 5678888888888887765
Q ss_pred CcccccCCCc--ceEEEccCCCCc
Q 041089 220 FPLSVCNISS--LDEAYLFKNRFK 241 (713)
Q Consensus 220 ~~~~~~~l~~--L~~L~l~~n~l~ 241 (713)
.+..+..++. ++.|++.+|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555665555 355666666554
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=6.5e-18 Score=157.96 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=116.7
Q ss_pred cEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCc-cccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCc
Q 041089 455 MQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPL-EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQ 533 (713)
Q Consensus 455 ~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls 533 (713)
+++++++|++. .+|..+.. .++.|++++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45566666654 55554433 234677777777655553 47888999999999999998888899999999999999
Q ss_pred CCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCCCCCCCCCCCcccccCCCCCCCCC
Q 041089 534 GNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVPKKGVFSNETRISLTGNEQLCGGL 613 (713)
Q Consensus 534 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 613 (713)
+|++++..+..|..+++|+.|+|++|++++..|..+..+++|++|++++|++.|.++.......+....+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999888888999999999999999999998999999999999999999999887643221112222344455556544
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.3e-17 Score=154.04 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=132.5
Q ss_pred CcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEc
Q 041089 60 QRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWV 139 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 139 (713)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 468999999999984 44 7999999999999999775 3458999999999999999999888999999999999999
Q ss_pred cCCccccccchhhcCcCCCCEEeccCcc-ccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcC
Q 041089 140 HTNNLVGEIQAIIGNWLKLERLSLYDNQ-LTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSG 218 (713)
Q Consensus 140 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 218 (713)
++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999999899999999999999999998 55 555 69999999999999999985 44 78889999999999998753
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.6e-19 Score=193.50 Aligned_cols=191 Identities=20% Similarity=0.184 Sum_probs=110.7
Q ss_pred cCCCCCCEEeccCCcccccCCcccccccccceeeccccc-------------ccccCCccccCCCCCCEEE-ccCCcccc
Q 041089 377 RNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNN-------------IRGIIPDSIGNLTLLNILQ-LGFNKLQG 442 (713)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~~ 442 (713)
..++.|+.|+|++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677778888888776 567778888888888876664 2333334444444444444 3333221
Q ss_pred cCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCc
Q 041089 443 SIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLS 522 (713)
Q Consensus 443 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 522 (713)
.|..+.+.+|.+. .+|.. .++.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+.
T Consensus 424 ----------~L~~l~l~~n~i~-~l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVL-KMEYA------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHH-HHHHT------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhccccc-ccCcc------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 1111111122221 01100 12356666666654 444 666666667777766666 5666666
Q ss_pred CCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccC-CccCCCCCCCCEEeCCCccCcccCCC
Q 041089 523 ACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQI-PIHLQDLPFLEYLNLSYNHFEGEVPK 591 (713)
Q Consensus 523 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p~ 591 (713)
.+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 66667777777776664 44 5666666777777777666655 66666666677777777766665543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.3e-17 Score=159.86 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=122.1
Q ss_pred CCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEE
Q 041089 378 NLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 378 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 457 (713)
.+.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3445666677777776432 46677777788887777763 34 56677777777777777775433 6777777777
Q ss_pred eCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcc
Q 041089 458 SAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSF 537 (713)
Q Consensus 458 ~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l 537 (713)
++++|++.+ +|. +.. ++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus 91 ~L~~N~l~~-l~~--------------------------~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKN-LNG--------------------------IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSC-CTT--------------------------CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCC-cCc--------------------------ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcC
Confidence 777776652 221 112 6788888888888753 3 577888888888888888
Q ss_pred cccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCccc
Q 041089 538 NGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGE 588 (713)
Q Consensus 538 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 588 (713)
++. + .+..+++|+.|++++|++++. ..+..+++|++|++++|++.+.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 764 3 677888888888888888866 5678888888888888888754
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.1e-16 Score=157.70 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=80.5
Q ss_pred EEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 63 TELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 63 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
+.++++.+.+.+.. .+..+++|++|++++|+++ .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 33444445544432 4555666666666666655 333 45566666666666666653322 555555555555555
Q ss_pred ccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcc
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPL 222 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 222 (713)
++++.. . +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+.+. .
T Consensus 96 ~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 96 RLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred ccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 555421 1 111 5555555555555532 2355555555555555555432 2 344555555555555555443 2
Q ss_pred cccCCCcceEEEccCCC
Q 041089 223 SVCNISSLDEAYLFKNR 239 (713)
Q Consensus 223 ~~~~l~~L~~L~l~~n~ 239 (713)
.+..+++|+.|++++|.
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 33333344444443333
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.7e-17 Score=187.00 Aligned_cols=180 Identities=24% Similarity=0.312 Sum_probs=81.2
Q ss_pred CccccCCCCCCEEeccCCcccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCC
Q 041089 373 PPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQ 452 (713)
Q Consensus 373 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 452 (713)
+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555555 34444445555555555555555 45555555555555555555555 4455555555
Q ss_pred CCcEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCC-Cceee
Q 041089 453 NLMQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTT-LEYLL 531 (713)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~ 531 (713)
+|++|+|++|.+ + .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..++
T Consensus 294 ~L~~L~L~~N~l-------------------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 294 QLKYFYFFDNMV-------------------------T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TCSEEECCSSCC-------------------------C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCC-------------------------C-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 555555555544 3 44555666677777777777777666665543321 22366
Q ss_pred CcCCcccccCCcccccCCCCCEEeCCCC--------cccccCCccCCCCCCCCEEeCCCccCcc
Q 041089 532 MQGNSFNGSIPQSLNALKSIKELDLSCN--------NLSGQIPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 532 ls~n~l~~~~~~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
+++|.+++.+|.. |+.|++++| .+.+..+..+..+..++...+++|-+.+
T Consensus 348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 7777777666643 444555555 3333444444555556666677776653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.7e-17 Score=164.51 Aligned_cols=123 Identities=11% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCCCEEECCCCCCCccCchhhhc-cCCCCeeeecCCCCc--ccCCccccCCCCCcEEEccCCccccccchhhcC-----
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGR-LFRLETIVLSNNSFS--GKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGN----- 154 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~----- 154 (713)
+.+++.|+++++ +.......+.. +++|++|||++|++. ...+..+.. ++.+.+..+. ..+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~---~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN---GKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG---GCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccc---cccccccccc---cCHHHhccccccc
Confidence 567777777754 22111223444 677888888888766 222222221 3334333332 12233444
Q ss_pred ---cCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCC
Q 041089 155 ---WLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSE 213 (713)
Q Consensus 155 ---l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 213 (713)
+++|+.+++.+ .++...+..|.+|++|+++++++|.+....+.+|..+.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777777777 66656666677777777777777777655556676666666665554
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.4e-16 Score=163.01 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=59.5
Q ss_pred ccccEEEccCCceeecCCccccCCCCCCEEeccCCcccccCCcccccccccc-eeecccccccccCCccccCCCCCCEEE
Q 041089 356 TTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQLTGTIPPAIGELRNLQ-YLGLVGNNIRGIIPDSIGNLTLLNILQ 434 (713)
Q Consensus 356 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~ 434 (713)
.+|+.+++.+|+++...+..|.++.+|+++++.+| +....+.+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 45666666666665555555666666666666655 5544455566666666 666655 45444455566666666666
Q ss_pred ccCCcccccCChhhhcCCCCcEEe
Q 041089 435 LGFNKLQGSIPSYLGKCQNLMQLS 458 (713)
Q Consensus 435 Ls~n~l~~~~~~~l~~~~~L~~L~ 458 (713)
++.|+++...+.+|.+|++|+.+.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 666666555555566666666554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.9e-16 Score=142.01 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=86.3
Q ss_pred CCCCEEECCCCCCC-ccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 84 SFLRVINLANNRFH-GQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777766 56666667777777777777776644 5566666677777777766666666666667777777
Q ss_pred ccCccccccC-cccccCCCCCcEEEccCCCCCCCCC---ccccCCCCCCEEeCCCCcCc
Q 041089 163 LYDNQLTGQL-RPSIGNLSALQTFDIAGNKLDGRIP---DSLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 163 Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~ 217 (713)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777666432 2556667777777777776664333 35666666776666666554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.1e-16 Score=143.65 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=73.7
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCch-hhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCC
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPK-EVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTN 142 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 142 (713)
.++++++.++. +|..+.. +|++|++++|++++..+. .|..+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 12 ~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 34455555533 3443332 677777777777655543 3667777777777777776666666666666666666666
Q ss_pred ccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCC
Q 041089 143 NLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLD 193 (713)
Q Consensus 143 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 193 (713)
++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665555555555555555555555555555555555555555555555544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=145.45 Aligned_cols=131 Identities=27% Similarity=0.320 Sum_probs=107.5
Q ss_pred cEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcC
Q 041089 455 MQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534 (713)
Q Consensus 455 ~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~ 534 (713)
+.+++++|.+. .+|..+. ..++.|++++|.++ .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555555555 4554432 22346777777776 5667888899999999999999988888899999999999999
Q ss_pred CcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 535 NSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 535 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
|++++..|..|..+++|+.|+|++|+++...+..|..+++|++|++++|++.+.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99998888899999999999999999997777789999999999999999988665
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.7e-16 Score=142.09 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=122.8
Q ss_pred CcEEEEECCCCCcc-eecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEE
Q 041089 60 QRVTELDLESQNIG-GFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFW 138 (713)
Q Consensus 60 ~~v~~L~L~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 138 (713)
.+++.|++++|.+. +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999998 77888899999999999999999865 7899999999999999999988888888899999999
Q ss_pred ccCCcccccc-chhhcCcCCCCEEeccCccccccCc---ccccCCCCCcEEEccCCCCCCCCCcc
Q 041089 139 VHTNNLVGEI-QAIIGNWLKLERLSLYDNQLTGQLR---PSIGNLSALQTFDIAGNKLDGRIPDS 199 (713)
Q Consensus 139 l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~ 199 (713)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999998753 3789999999999999999996655 47899999999999999987 45543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.7e-16 Score=139.59 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCCCEEECCCCCCC-ccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 84 SFLRVINLANNRFH-GQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 84 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 55666666666666666666666643 4556666666666666666655666666666666666
Q ss_pred ccCcccccc-CcccccCCCCCcEEEccCCCCCCCCC---ccccCCCCCCEEeCC
Q 041089 163 LYDNQLTGQ-LRPSIGNLSALQTFDIAGNKLDGRIP---DSLGQLRNLNYLGTS 212 (713)
Q Consensus 163 Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 212 (713)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 23556666666666666666664433 356666666666654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8.4e-16 Score=137.29 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=116.6
Q ss_pred CcEEEEECCCCCcc-eecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEE
Q 041089 60 QRVTELDLESQNIG-GFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFW 138 (713)
Q Consensus 60 ~~v~~L~L~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 138 (713)
.+++.|+++++.+. +.++..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57999999999998 78888999999999999999999865 7899999999999999999987888888999999999
Q ss_pred ccCCccccc-cchhhcCcCCCCEEeccCccccccCc---ccccCCCCCcEEEccC
Q 041089 139 VHTNNLVGE-IQAIIGNWLKLERLSLYDNQLTGQLR---PSIGNLSALQTFDIAG 189 (713)
Q Consensus 139 l~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~~ 189 (713)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999884 45889999999999999999997765 5789999999999864
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.3e-15 Score=136.93 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=105.3
Q ss_pred cEEeCCCCCCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcC
Q 041089 455 MQLSAPNNQLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQG 534 (713)
Q Consensus 455 ~~L~l~~n~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~ 534 (713)
+.++++++++. .+|..+. +.++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 4443332 2234667777777766666678889999999999999977777788999999999999
Q ss_pred CcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 535 NSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 535 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998877788999999999999999997777677889999999999999998776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=135.95 Aligned_cols=124 Identities=25% Similarity=0.255 Sum_probs=70.1
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++++++.+.. +|..+. ++|++|+|++|+++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+
T Consensus 15 l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4455555553 333332 46777777777776 5666677777777777777777655555565555555555555555
Q ss_pred ccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCC
Q 041089 145 VGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKL 192 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 192 (713)
++..+..|..+++|++|+|++|.++...+..|..+++|++|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 555555555555555555555555533333444444444444444444
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2e-14 Score=132.45 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCCccccccCCCCCcEEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCc
Q 041089 47 LCQWTGVTCGHRHQRVTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPT 126 (713)
Q Consensus 47 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 126 (713)
.|.|.++.|.. +.+.. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~C~~~~l~~~~------------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 6 SCSGTEIRCNS------------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp EEETTEEECCS------------SCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EeCCCEEEecC------------CCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence 36777777754 22332 22222 25778888888888766666677777788888777777754444
Q ss_pred cccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCC
Q 041089 127 NLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLD 193 (713)
Q Consensus 127 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 193 (713)
.+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4556666666666665555544444455555555555555555333333444455555555555444
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=4.3e-13 Score=140.66 Aligned_cols=335 Identities=10% Similarity=0.043 Sum_probs=186.7
Q ss_pred cceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchh
Q 041089 72 IGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAI 151 (713)
Q Consensus 72 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~ 151 (713)
++.+-..+|.++.+|+.+++..+ ++..-..+|.++++|+.+++..+ ++......|.+|.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 33444567888889999988754 66555677888889998888755 55455667788888887766543 33344455
Q ss_pred hcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcce
Q 041089 152 IGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLD 231 (713)
Q Consensus 152 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 231 (713)
|.++..++........ ......|.+|++|+.+.+..+... .....|..+.+|+.+.+..+ +.......+.++..|+
T Consensus 136 F~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCcccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 6555444333333222 123456777888888887655322 44456777777777777655 3333344555666666
Q ss_pred EEEccCCCCcccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 232 EAYLFKNRFKGSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 232 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
.+.+..+... +....+ ....|+.+.+... ++......+..+..++.+.+..+.. ......|..+..++.+....+
T Consensus 212 ~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp BCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS
T ss_pred eeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce
Confidence 5555443221 111111 3345555555432 2223334455555555555544322 123333444444444444332
Q ss_pred cccCcCCCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCceeecCCccccCCCCCCEEeccCCc
Q 041089 312 NLGTRTSTDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQISGTIPPEIRNLFNLNGLGLEYNQ 391 (713)
Q Consensus 312 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 391 (713)
.+.. ..+..+. +|+.+.+.++ ++..-...|.++.+|+.++|.++
T Consensus 287 ~i~~---------~~F~~~~-------------------------~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 287 IVPE---------KTFYGCS-------------------------SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EECT---------TTTTTCT-------------------------TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eecc---------ccccccc-------------------------cccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 2111 1122233 3444444332 33233456777777777777643
Q ss_pred ccccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEE
Q 041089 392 LTGTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQL 457 (713)
Q Consensus 392 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 457 (713)
++.....+|.+|.+|+.+++..+ ++.+-..+|.+|++|+.+++..+ +. .+..+|.+|++|+++
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55445566777777777777665 55455567777777777777654 22 233456677777654
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=7.2e-13 Score=138.94 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=44.1
Q ss_pred cccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCC
Q 041089 496 EVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFL 575 (713)
Q Consensus 496 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 575 (713)
+|.++++|+.++|..+ ++.....+|.+|++|+.+++..+ ++.....+|.++++|+.+++..+ ++ .+...|.++++|
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 4555666666666533 44334456666666666666555 55445556666666666666543 22 223455566555
Q ss_pred CEE
Q 041089 576 EYL 578 (713)
Q Consensus 576 ~~L 578 (713)
+.+
T Consensus 391 ~~I 393 (394)
T 4fs7_A 391 KWI 393 (394)
T ss_dssp EEE
T ss_pred cEE
Confidence 543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.9e-14 Score=132.30 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=98.2
Q ss_pred ccccCCCCCCEEECCCCCCCccCchhhhccC-CCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcC
Q 041089 78 PYIGNLSFLRVINLANNRFHGQIPKEVGRLF-RLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWL 156 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 156 (713)
+.+.++++|++|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 45667788888888888887 4454 44444 888888888888854 5677888888888888888765555567788
Q ss_pred CCCEEeccCccccccCcc--cccCCCCCcEEEccCCCCCCCCCcc----ccCCCCCCEEeCCCCcCc
Q 041089 157 KLERLSLYDNQLTGQLRP--SIGNLSALQTFDIAGNKLDGRIPDS----LGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~ 217 (713)
+|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|+++.|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888875 3444 6777888888888888876 45553 777777777777777544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=6.1e-13 Score=138.66 Aligned_cols=265 Identities=12% Similarity=0.100 Sum_probs=130.8
Q ss_pred CCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhcCcCCCCEEe
Q 041089 83 LSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLS 162 (713)
Q Consensus 83 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 162 (713)
+..++.+.+..+ ++..-..+|.++ +|+.+++..+ ++......|.++ +|+.+.+.. .+....+.+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 345555555432 332334445543 4666665544 443444445553 456665553 44444445555666666666
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCcccccCCCcceEEEccCCCCcc
Q 041089 163 LYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFPLSVCNISSLDEAYLFKNRFKG 242 (713)
Q Consensus 163 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 242 (713)
+++|.++......|. +.+|+.+.+..+ ++.....+|.++++|+.+.+..+ +...-..+|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT- 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-
Confidence 665555533333333 455666666533 44333445555666666666543 33233333434 455555553 2232
Q ss_pred cCCccccCCCCCCCEEeCCCCcCc-----ccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCCcccCcC
Q 041089 243 SLPVCLGFNLPKLTVLVVAQNNLT-----GFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRNNLGTRT 317 (713)
Q Consensus 243 ~~p~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 317 (713)
.++...+.++++|+.+.+.++.+. ...+..|.+|++|+.+++.+ .++......|.++++|+.+.+..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 344444445566666665555443 23444556666666666653 344444555666666666666443 22211
Q ss_pred CCCccccccccCCCCCcEEeeeccccccccChhhhhccccccEEEccCCc
Q 041089 318 STDLDFITLLTNCSKLVKLGLVFNRFGGALPHSIANLSTTMTLIAMAGNQ 367 (713)
Q Consensus 318 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 367 (713)
...+.+| +|+.+++.+|.........+..++..+..+.+..+.
T Consensus 339 ------~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 ------FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ------TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ------HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 1234455 666666666554433333333333345555554443
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=3.9e-13 Score=140.17 Aligned_cols=264 Identities=11% Similarity=0.099 Sum_probs=206.2
Q ss_pred EEEEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccC
Q 041089 62 VTELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHT 141 (713)
Q Consensus 62 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 141 (713)
++.+.+.. .+...-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+++.. .+....+..|.+|.+|+.++++.
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 33444543 4555556788875 7999999876 665666778874 799999986 67767778899999999999999
Q ss_pred CccccccchhhcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCCccccCCCCCCEEeCCCCcCcCCCc
Q 041089 142 NNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIPDSLGQLRNLNYLGTSENDFSGMFP 221 (713)
Q Consensus 142 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 221 (713)
|.+.......|. +.+|+.+.+..+ ++......|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+...-.
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence 998877666776 689999999854 77677788999999999999875 55455567777 789999995 44666667
Q ss_pred ccccCCCcceEEEccCCCCc----ccCCccccCCCCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCccccccccccc
Q 041089 222 LSVCNISSLDEAYLFKNRFK----GSLPVCLGFNLPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINF 297 (713)
Q Consensus 222 ~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 297 (713)
..|.+|++|+.+++.++.+. ..++...+.+|++|+.+.+. +.++.+....|.+|++|+.+.+..+ ++.....+|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 78999999999999887654 24677777799999999998 4577777788999999999999665 666777889
Q ss_pred CCCCCCCeEEcCCCcccCcCCCCccccccccCC-CCCcEEeeeccccc
Q 041089 298 NSLPNLSKLYLGRNNLGTRTSTDLDFITLLTNC-SKLVKLGLVFNRFG 344 (713)
Q Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~ 344 (713)
.++ +|+.+++..|....... ..+.++ ..++.+.+..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~------~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFE------KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCC------SSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCccccc------ccccCCCCCccEEEeCHHHHH
Confidence 999 99999999998765433 234445 47888888876543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.6e-16 Score=149.40 Aligned_cols=132 Identities=20% Similarity=0.321 Sum_probs=77.3
Q ss_pred cEEEEECCCCCcceecCc------cccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCC
Q 041089 61 RVTELDLESQNIGGFLSP------YIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNL 134 (713)
Q Consensus 61 ~v~~L~L~~~~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 134 (713)
+++.++++.+.+.|..+. .+..+++|++|++++|++++ +| .+.++++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444454455554443 66666777777777766664 55 6666667777777776666 455555555666
Q ss_pred cEEEccCCccccccchhhcCcCCCCEEeccCccccccCc-ccccCCCCCcEEEccCCCCCCCCC
Q 041089 135 IDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLR-PSIGNLSALQTFDIAGNKLDGRIP 197 (713)
Q Consensus 135 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~ 197 (713)
++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 666666666654 23 45556666666666666653222 345566666666666666554433
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1e-13 Score=126.42 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=90.5
Q ss_pred hhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCc
Q 041089 481 LLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560 (713)
Q Consensus 481 ~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 560 (713)
.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 5677777766 3555443 778999999999998888889999999999999999998777788899999999999999
Q ss_pred ccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 561 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
+++..+..|..+++|++|++++|++.+.++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 998777788999999999999999988765
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.6e-16 Score=147.99 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=95.0
Q ss_pred ccCCCCCCEEECCCCCCCccCch------hhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCccccccchhhc
Q 041089 80 IGNLSFLRVINLANNRFHGQIPK------EVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAIIG 153 (713)
Q Consensus 80 l~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 153 (713)
+.....++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556666777777777766665 78888888888888888775 56 7777777888888777776 4566666
Q ss_pred CcCCCCEEeccCccccccCcccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEeCCCCcCcCCCc
Q 041089 154 NWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNKLDGRIP-DSLGQLRNLNYLGTSENDFSGMFP 221 (713)
Q Consensus 154 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 221 (713)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 67777777777777775 33 56677777777777777763221 356667777777777776655544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.4e-13 Score=124.21 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=89.3
Q ss_pred hhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCc
Q 041089 481 LLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNN 560 (713)
Q Consensus 481 ~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 560 (713)
.+++++|.+. .+|..+. +.|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 5677777775 5665553 788999999999998888889999999999999999997766678889999999999999
Q ss_pred ccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 561 LSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 561 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
+++..+..|..+++|++|++++|++.+..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 997766678899999999999999987654
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=9.6e-14 Score=127.61 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=62.6
Q ss_pred hhccCCCCeeeecCCCCcccCCccccCCC-CCcEEEccCCccccccchhhcCcCCCCEEeccCccccccCcccccCCCCC
Q 041089 104 VGRLFRLETIVLSNNSFSGKIPTNLSRCF-NLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLSAL 182 (713)
Q Consensus 104 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 182 (713)
+.++.+|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455667777777777776 3343 33333 666666666666553 455556666666666666664433334556666
Q ss_pred cEEEccCCCCCCCCCc--cccCCCCCCEEeCCCCcCc
Q 041089 183 QTFDIAGNKLDGRIPD--SLGQLRNLNYLGTSENDFS 217 (713)
Q Consensus 183 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~ 217 (713)
++|++++|.++ .+|. .+..+++|++|++++|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 66666666654 3343 4555555555555555554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.4e-12 Score=118.84 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=44.7
Q ss_pred EECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcccCCccccCCCCCcEEEccCCcc
Q 041089 65 LDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNNL 144 (713)
Q Consensus 65 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 144 (713)
++++++.+.. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++
T Consensus 14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4444444444 233332 5555555555555555555555555555555555555533333334444444444444443
Q ss_pred ccccchhhcCcCCCCEEeccCc
Q 041089 145 VGEIQAIIGNWLKLERLSLYDN 166 (713)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n 166 (713)
++..+..+..+++|++|+|++|
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhcCCCCCCEEEeCCC
Confidence 3333333333333333333333
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.2e-12 Score=117.87 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=29.3
Q ss_pred EEECCCCCcceecCccccCCCCCCEEECCCCCCCccCchhhhccCCCCeeeecCCCCcc
Q 041089 64 ELDLESQNIGGFLSPYIGNLSFLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNSFSG 122 (713)
Q Consensus 64 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 122 (713)
.++++++.+.. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 16 ~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 16 LVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 45555555543 333332 555555555555555555555555555555555555553
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=2.1e-10 Score=120.09 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=52.0
Q ss_pred ccchhhcCcC-CCCEEeccCccccccCcccccCCCCCcEEEccCCC---CCCCCCccccCCCCCCEEeCCCCcCcCCCcc
Q 041089 147 EIQAIIGNWL-KLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGNK---LDGRIPDSLGQLRNLNYLGTSENDFSGMFPL 222 (713)
Q Consensus 147 ~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 222 (713)
....+|.++. .|+.+.+..+ ++..-...|.+|++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ +...-..
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3445666664 5888888654 555566778888888888887653 44333456677777776655443 2222233
Q ss_pred cccCCCcceEEEcc
Q 041089 223 SVCNISSLDEAYLF 236 (713)
Q Consensus 223 ~~~~l~~L~~L~l~ 236 (713)
.+..+.+|+.+.+.
T Consensus 132 aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 132 AFHHCEELDTVTIP 145 (394)
T ss_dssp TTTTCTTCCEEECC
T ss_pred hhhhhccccccccc
Confidence 44455555555443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=4.7e-10 Score=117.45 Aligned_cols=112 Identities=10% Similarity=0.083 Sum_probs=62.6
Q ss_pred cCccccCCC-CCCEEECCCCCCCccCchhhhccCCCCeeeecCCC---CcccCCccccCCCCCcEEEccCCccccccchh
Q 041089 76 LSPYIGNLS-FLRVINLANNRFHGQIPKEVGRLFRLETIVLSNNS---FSGKIPTNLSRCFNLIDFWVHTNNLVGEIQAI 151 (713)
Q Consensus 76 ~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~ 151 (713)
-..+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.++.|. ++......|.+|.+|+.+.+..+ +.......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345666664 4777777653 554555677777777777776653 44344455666666666555432 33333445
Q ss_pred hcCcCCCCEEeccCccccccCcccccCCCCCcEEEccCC
Q 041089 152 IGNWLKLERLSLYDNQLTGQLRPSIGNLSALQTFDIAGN 190 (713)
Q Consensus 152 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 190 (713)
|..+.+|+.+.+..+- .......|..+.+|+.+.+..+
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce
Confidence 5556666666665332 2233444555566666655543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=1.4e-11 Score=126.85 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=90.2
Q ss_pred hhcccCC-cCCCCCCccccCCCCCcEEeCCC-CcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCC
Q 041089 481 LLDLSEN-HFSGSIPLEVGNLKSLVQLDISR-NHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSC 558 (713)
Q Consensus 481 ~l~ls~n-~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 558 (713)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 676 4777 88888999999996 999887778899999999999999999988888899999999999999
Q ss_pred CcccccCCccCCCCCCCCEEeCCCccCcccCC
Q 041089 559 NNLSGQIPIHLQDLPFLEYLNLSYNHFEGEVP 590 (713)
Q Consensus 559 N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 590 (713)
|+|++..+..+..++ |++|++.+|++.+.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 999976666666666 9999999999987654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.6e-13 Score=140.03 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=102.2
Q ss_pred ccccceeecccccccccCCccc----c-CCCCCCEEEccCCcccccCChhh-hcCCCCcEEeCCCCCCCCCCCccccCcc
Q 041089 403 LRNLQYLGLVGNNIRGIIPDSI----G-NLTLLNILQLGFNKLQGSIPSYL-GKCQNLMQLSAPNNQLNGTLPPQIFGIT 476 (713)
Q Consensus 403 l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 476 (713)
.++|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH----
Confidence 3567777777777654322222 2 22566777777776653322222 234456666666665542111111
Q ss_pred cccchhcccCCcCCCCCCccc-cCCCCCcEEeCCCCcCCcc----CcccCcCCCCCceeeCcCCccccc----CCccccc
Q 041089 477 PLSKLLDLSENHFSGSIPLEV-GNLKSLVQLDISRNHFSNE----IPVTLSACTTLEYLLMQGNSFNGS----IPQSLNA 547 (713)
Q Consensus 477 ~l~~~l~ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~ 547 (713)
...+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+..
T Consensus 147 -----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 147 -----------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp -----------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred -----------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 0111 2356788999999988652 344456788899999999988754 3556677
Q ss_pred CCCCCEEeCCCCccccc----CCccCCCCCCCCEEeCCCccCcc
Q 041089 548 LKSIKELDLSCNNLSGQ----IPIHLQDLPFLEYLNLSYNHFEG 587 (713)
Q Consensus 548 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~n~l~~ 587 (713)
.++|+.|+|++|.++.. ++..+...++|++||+++|++..
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 78899999999998753 33445567889999999998864
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=6.9e-13 Score=136.91 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred cEEEEECCCCCcceecCccccC-----CCCCCEEECCCCCCCccCchhh-hccCCCCeeeecCCCCcccCCccc-----c
Q 041089 61 RVTELDLESQNIGGFLSPYIGN-----LSFLRVINLANNRFHGQIPKEV-GRLFRLETIVLSNNSFSGKIPTNL-----S 129 (713)
Q Consensus 61 ~v~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l-----~ 129 (713)
.++.|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 3555555555554432222211 1455555555555543222121 233455555555555543322222 1
Q ss_pred CCCCCcEEEccCCccccc----cchhhcCcCCCCEEeccCcccccc----CcccccCCCCCcEEEccCCCCC
Q 041089 130 RCFNLIDFWVHTNNLVGE----IQAIIGNWLKLERLSLYDNQLTGQ----LRPSIGNLSALQTFDIAGNKLD 193 (713)
Q Consensus 130 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 193 (713)
..++|++|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 234455555555544331 222233444444444444444321 1223333444444444444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=4.8e-11 Score=122.84 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCccccccCCCCCcEEEEECCCC-CcceecCccccCCCCCCEEECCC-CCCCccCchhhhccCCCCeeeecCCCCcccCC
Q 041089 48 CQWTGVTCGHRHQRVTELDLESQ-NIGGFLSPYIGNLSFLRVINLAN-NRFHGQIPKEVGRLFRLETIVLSNNSFSGKIP 125 (713)
Q Consensus 48 c~w~gv~c~~~~~~v~~L~L~~~-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 125 (713)
|.|..|.|.. + .+.. +|. +..+++|++|+|++ |++++..+..|+++++|++|+|++|++++..|
T Consensus 8 C~~~~v~~~~------------~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCTR------------DGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECCS------------SCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcCC------------CCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 7777776653 3 4554 555 88888888888885 88887777778888888888888888887777
Q ss_pred ccccCCCCCcEEEccCCccccccchhhcCcCCCCEEeccCcccc
Q 041089 126 TNLSRCFNLIDFWVHTNNLVGEIQAIIGNWLKLERLSLYDNQLT 169 (713)
Q Consensus 126 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 169 (713)
..|.++++|++|+|++|++++..+..+..++ |+.|+|.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6777777777777777666655444444443 555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=1.4e-07 Score=98.06 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCCCEEeCCCCcCcccCCccCcCCCCCcEEeccCcccccccccccCCCCCCCeEEcCCC
Q 041089 252 LPKLTVLVVAQNNLTGFLPQSLSNASKLEWLELNENHFSGQVRINFNSLPNLSKLYLGRN 311 (713)
Q Consensus 252 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 311 (713)
...+..+.+.... .......+..+.+|+.+.+..+ +.......|..+..|+.+.+..+
T Consensus 193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence 3444555444332 2234455666777777777654 33344455666777777766543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=8.7e-08 Score=99.67 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=74.7
Q ss_pred ccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCChhhhcCCCCcEEeCCCCCCCCCCCccccCcccc
Q 041089 399 AIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPSYLGKCQNLMQLSAPNNQLNGTLPPQIFGITPL 478 (713)
Q Consensus 399 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l 478 (713)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------------- 275 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------------- 275 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-------------
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-------------
Confidence 4444555555555433 22233344555666666666543 33233445555556655544321 11
Q ss_pred cchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCC
Q 041089 479 SKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSC 558 (713)
Q Consensus 479 ~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 558 (713)
......|.++++|+.+++.++.++.....+|.+|++|+.++|..+ ++.....+|.++++|+.+.+..
T Consensus 276 ------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 276 ------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 011234556666666666666665444556666666766666543 4444455666666666666644
Q ss_pred CcccccCCccCCCC
Q 041089 559 NNLSGQIPIHLQDL 572 (713)
Q Consensus 559 N~l~~~~p~~l~~l 572 (713)
+ ++.+-..+|.++
T Consensus 343 ~-v~~I~~~aF~~c 355 (379)
T 4h09_A 343 S-ITLIESGAFEGS 355 (379)
T ss_dssp T-CCEECTTTTTTS
T ss_pred c-cCEEchhHhhCC
Confidence 3 443334445444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=4.6e-10 Score=114.59 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=65.4
Q ss_pred CcEEEEECCCCCcce-e-------cCccccCCCCCCEEECCCCCCC---------ccCchhhhccCCCCeeeecCCCCcc
Q 041089 60 QRVTELDLESQNIGG-F-------LSPYIGNLSFLRVINLANNRFH---------GQIPKEVGRLFRLETIVLSNNSFSG 122 (713)
Q Consensus 60 ~~v~~L~L~~~~l~~-~-------~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~l~~ 122 (713)
.+|+.|.+......+ . +..++.++++|+.|.+..+... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 568888888666542 1 2344667889999988765331 235566677888888888877311
Q ss_pred cCCccccCCCCCcEEEccCCccccccchhhc--CcCCCCEEecc
Q 041089 123 KIPTNLSRCFNLIDFWVHTNNLVGEIQAIIG--NWLKLERLSLY 164 (713)
Q Consensus 123 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~Ls 164 (713)
.++. +. +++|++|++..+.+.......+. .+++|++|+|+
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 33 67788888877776554444443 56777777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=1.4e-09 Score=111.13 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=111.3
Q ss_pred ccCCCCCCEEeccCCccc---------ccCCcccccccccceeecccccccccCCccccCCCCCCEEEccCCcccccCCh
Q 041089 376 IRNLFNLNGLGLEYNQLT---------GTIPPAIGELRNLQYLGLVGNNIRGIIPDSIGNLTLLNILQLGFNKLQGSIPS 446 (713)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 446 (713)
...+++|+.|.+...... +.+...+..+|+|+.|++++|.-. .++. +. +++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445667777777554221 123345567788999998877311 2232 33 78899999988877654334
Q ss_pred hhh--cCCCCcEEeCCCC--CCCCCCCccccCcccccchhcccCCcCCCCCCccccCCCCCcEEeCCCCcCCccCcccC-
Q 041089 447 YLG--KCQNLMQLSAPNN--QLNGTLPPQIFGITPLSKLLDLSENHFSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTL- 521 (713)
Q Consensus 447 ~l~--~~~~L~~L~l~~n--~l~~~~~~~~~~~~~l~~~l~ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~- 521 (713)
.+. .+++|+.|+|+.+ ...+.. .+..+... + .-..+++|++|+|++|.+.+..+..+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l~~~----------l------~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDG--DMNVFRPL----------F------SKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCS--CGGGTGGG----------S------CTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccch--hHHHHHHH----------H------hcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 444 6788888887532 111110 00000000 0 01346789999999888875433322
Q ss_pred --cCCCCCceeeCcCCccccc----CCcccccCCCCCEEeCCCCcccccCCccCCC-CCCCCEEeCCCcc
Q 041089 522 --SACTTLEYLLMQGNSFNGS----IPQSLNALKSIKELDLSCNNLSGQIPIHLQD-LPFLEYLNLSYNH 584 (713)
Q Consensus 522 --~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~n~ 584 (713)
..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3577899999999888764 3344456788999999988887543333332 2 3457777766
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=6e-10 Score=107.56 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=83.1
Q ss_pred CCCCccccccCCCCCcEEEEECCC---CCcceecC-ccccCCC---------CCCEEECCCCCCCccCchhhhccCCCCe
Q 041089 46 NLCQWTGVTCGHRHQRVTELDLES---QNIGGFLS-PYIGNLS---------FLRVINLANNRFHGQIPKEVGRLFRLET 112 (713)
Q Consensus 46 ~~c~w~gv~c~~~~~~v~~L~L~~---~~l~~~~~-~~l~~l~---------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 112 (713)
..|+|.|+.|+....+|..+...+ ..+.+.+. ..+..++ .-+.|||+. |...+.|+.
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~----------l~~dp~L~~ 145 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG----------LRSDPDLVA 145 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTT----------GGGCHHHHH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHH----------cCCCcchhh
Confidence 468999999987656776554443 22222222 1111111 223344432 223333333
Q ss_pred --eeecCCCCc---ccCCccccCCCCCcEEEccCCcccc--ccchhhcCcCCCCEEeccCccccccCcccccCCC--CCc
Q 041089 113 --IVLSNNSFS---GKIPTNLSRCFNLIDFWVHTNNLVG--EIQAIIGNWLKLERLSLYDNQLTGQLRPSIGNLS--ALQ 183 (713)
Q Consensus 113 --L~Ls~n~l~---~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~ 183 (713)
++++.|... +.++....++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++. ..+..+. +|+
T Consensus 146 ~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~ 223 (267)
T 3rw6_A 146 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE 223 (267)
T ss_dssp TTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS
T ss_pred cCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc
Confidence 445555322 1111122456666666666666665 4455666777777777777777653 2233333 777
Q ss_pred EEEccCCCCCCCCCc-------cccCCCCCCEEeC
Q 041089 184 TFDIAGNKLDGRIPD-------SLGQLRNLNYLGT 211 (713)
Q Consensus 184 ~L~L~~n~l~~~~~~-------~l~~l~~L~~L~l 211 (713)
+|+|++|.+.+.+|+ .+..+++|+.|+-
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 777777777765552 3566777777753
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=9.1e-09 Score=94.68 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=37.5
Q ss_pred cCccccCCCCCCEEECCCC-CCCcc----CchhhhccCCCCeeeecCCCCcccC----CccccCCCCCcEEEccCCccc
Q 041089 76 LSPYIGNLSFLRVINLANN-RFHGQ----IPKEVGRLFRLETIVLSNNSFSGKI----PTNLSRCFNLIDFWVHTNNLV 145 (713)
Q Consensus 76 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~l~~n~~~ 145 (713)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...+.|++|++++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445566677777777777 66532 3334455566666666666665322 222233344444555444444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=7.5e-08 Score=88.52 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=70.8
Q ss_pred CchhhhccCCCCeeeecCC-CCccc----CCccccCCCCCcEEEccCCccccc----cchhhcCcCCCCEEeccCccccc
Q 041089 100 IPKEVGRLFRLETIVLSNN-SFSGK----IPTNLSRCFNLIDFWVHTNNLVGE----IQAIIGNWLKLERLSLYDNQLTG 170 (713)
Q Consensus 100 ~p~~~~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 170 (713)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455667788888888888 77743 333455667777777777777543 23344455667777777777664
Q ss_pred c----CcccccCCCCCcEEEc--cCCCCCCC----CCccccCCCCCCEEeCCCCcC
Q 041089 171 Q----LRPSIGNLSALQTFDI--AGNKLDGR----IPDSLGQLRNLNYLGTSENDF 216 (713)
Q Consensus 171 ~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 216 (713)
. +...+...+.|++|++ ++|.+... +.+.+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 3344555666667766 56666532 223344445566666655544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.9e-07 Score=90.07 Aligned_cols=105 Identities=23% Similarity=0.203 Sum_probs=65.5
Q ss_pred ccCCCCCCE--EECCCCCCC---ccCchhhhccCCCCeeeecCCCCcc--cCCccccCCCCCcEEEccCCccccccchhh
Q 041089 80 IGNLSFLRV--INLANNRFH---GQIPKEVGRLFRLETIVLSNNSFSG--KIPTNLSRCFNLIDFWVHTNNLVGEIQAII 152 (713)
Q Consensus 80 l~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l 152 (713)
|...+.|+. ++++.|+.. +.++....++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444444444 556666432 1222223456777777777777776 4456666777777777777777654 223
Q ss_pred cCcC--CCCEEeccCccccccCc-------ccccCCCCCcEEE
Q 041089 153 GNWL--KLERLSLYDNQLTGQLR-------PSIGNLSALQTFD 186 (713)
Q Consensus 153 ~~l~--~L~~L~Ls~n~l~~~~~-------~~l~~l~~L~~L~ 186 (713)
..+. +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 78888888888876554 2366788888876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.4e-06 Score=77.55 Aligned_cols=83 Identities=4% Similarity=0.008 Sum_probs=43.8
Q ss_pred CCCeeeecCCCCcccCCccccCCCCCcEEEccCCc-cccccchhhcCc----CCCCEEeccCcc-ccccCcccccCCCCC
Q 041089 109 RLETIVLSNNSFSGKIPTNLSRCFNLIDFWVHTNN-LVGEIQAIIGNW----LKLERLSLYDNQ-LTGQLRPSIGNLSAL 182 (713)
Q Consensus 109 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 182 (713)
+|++||++++.++...-..+.+|++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444555555555555553 443333334432 356666666653 554433445556666
Q ss_pred cEEEccCCC
Q 041089 183 QTFDIAGNK 191 (713)
Q Consensus 183 ~~L~L~~n~ 191 (713)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=6.7e-07 Score=79.69 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCc-ccccCCcccccC----CCCCEEeCCCCc-ccccCCccCCCCCC
Q 041089 501 KSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNS-FNGSIPQSLNAL----KSIKELDLSCNN-LSGQIPIHLQDLPF 574 (713)
Q Consensus 501 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 574 (713)
..|++||+++|.++..--..+..|++|+.|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888876655667788888888888884 665544455543 468888888874 76544445677888
Q ss_pred CCEEeCCCcc
Q 041089 575 LEYLNLSYNH 584 (713)
Q Consensus 575 L~~L~ls~n~ 584 (713)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00013 Score=66.26 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred ccccCCCCCCEEECCCC-CCCc----cCchhhhccCCCCeeeecCCCCcc
Q 041089 78 PYIGNLSFLRVINLANN-RFHG----QIPKEVGRLFRLETIVLSNNSFSG 122 (713)
Q Consensus 78 ~~l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~ 122 (713)
..+.+-+.|++|+|++| ++.. .+..++..-+.|++|+|++|.+..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 34455567777777764 6542 233445555667777777776663
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.00095 Score=56.56 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=39.2
Q ss_pred eeeCcCCccc-ccCCcccccCCCCCEEeCCCCcccccCCccCCCCCCCCEEeCCCccCcccC
Q 041089 529 YLLMQGNSFN-GSIPQSLNALKSIKELDLSCNNLSGQIPIHLQDLPFLEYLNLSYNHFEGEV 589 (713)
Q Consensus 529 ~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 589 (713)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666666665 24554332 35777777777777666666777777888888877776654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.90 E-value=0.00061 Score=61.81 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCcEEEEECCCC-Cccee----cCccccCCCCCCEEECCCCCCCc----cCchhhhccCCCCeeeecCCCCcccCCc---
Q 041089 59 HQRVTELDLESQ-NIGGF----LSPYIGNLSFLRVINLANNRFHG----QIPKEVGRLFRLETIVLSNNSFSGKIPT--- 126 (713)
Q Consensus 59 ~~~v~~L~L~~~-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--- 126 (713)
...+++|+|+++ .+... +..++..-++|+.|+|++|++.. .+...+..-+.|++|+|+.|.+....-.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 367999999985 77642 45677788999999999999984 3445566778899999999988854322
Q ss_pred -cccCCCCCcEEEccCC
Q 041089 127 -NLSRCFNLIDFWVHTN 142 (713)
Q Consensus 127 -~l~~l~~L~~L~l~~n 142 (713)
.+..-..|++|+|+++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 2334445666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0053 Score=51.89 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=39.8
Q ss_pred EEeCCCCcCC-ccCcccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeCCCCccc
Q 041089 505 QLDISRNHFS-NEIPVTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDLSCNNLS 562 (713)
Q Consensus 505 ~L~Ls~n~l~-~~~p~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 562 (713)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777665 24554432 46788888888887666667788888888888888775
No 165
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=92.83 E-value=0.016 Score=57.88 Aligned_cols=36 Identities=44% Similarity=0.708 Sum_probs=29.5
Q ss_pred cccHHHHHHHHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 677 IVSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 677 ~~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
.+.+.++.+++++|.....||+|+||+||+|+..+|
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~ 63 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG 63 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCC
Confidence 355566777889999999999999999999997655
No 166
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=92.53 E-value=0.05 Score=54.31 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHhc----------cCcCCeeccCCCceEEEEEeCC
Q 041089 676 PIVSYAELSKATKE----------FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 676 ~~~~~~~l~~at~~----------f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.++++++++||+. |.....||+|+||.||+|....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~ 68 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKH 68 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECC
Confidence 45788999999876 5556789999999999998753
No 167
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=92.33 E-value=0.035 Score=57.99 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=29.1
Q ss_pred ccHHHHHHHHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 678 VSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 678 ~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.+.++..++++|....+||+|+||+||+|+..++
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~ 98 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNA 98 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTT
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCC
Confidence 34566666788999999999999999999998654
No 168
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=91.20 E-value=0.074 Score=52.34 Aligned_cols=21 Identities=57% Similarity=0.852 Sum_probs=17.5
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.-...||+|+||+||||++.+
T Consensus 39 ~l~~~iG~G~fG~Vy~~~~~~ 59 (307)
T 3omv_A 39 MLSTRIGSGSFGTVYKGKWHG 59 (307)
T ss_dssp CEEEECCCCSSSEEEEEESSS
T ss_pred EEeeEEeeCCCcEEEEEEECC
Confidence 346789999999999998754
No 169
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=90.12 E-value=0.086 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.6
Q ss_pred cCcCCeeccCCCceEEEEEeC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~ 710 (713)
|.-.+.||+|+||+||||++.
T Consensus 43 ~~l~~~LG~G~fG~Vy~a~~~ 63 (329)
T 4aoj_A 43 IVLKWELGEGAFGKVFLAECH 63 (329)
T ss_dssp EEEEEEEEECSSEEEEEEEES
T ss_pred eEEEEEEccCCCcEEEEEEEC
Confidence 444678999999999999864
No 170
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=89.15 E-value=0.035 Score=55.12 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.9
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++|.....||+|+||+||+|....
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~ 80 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKE 80 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETT
T ss_pred hheeeeheeccCCCeEEEEEEECC
Confidence 468888899999999999998763
No 171
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=85.92 E-value=0.21 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.8
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+|+||+||||+..
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~~ 86 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADAF 86 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEEE
T ss_pred HeEEeeEEecCCCeEEEEEEEc
Confidence 3445678999999999999853
No 172
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=85.05 E-value=0.38 Score=47.87 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=17.0
Q ss_pred cHHHHHHHHhccCc---------CCeeccCCCceEEEEEeC
Q 041089 679 SYAELSKATKEFSS---------SNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 679 ~~~~l~~at~~f~~---------~~~iG~GgfG~VYk~~l~ 710 (713)
++.+...++..|.. ...||+|+||+||+|...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~ 71 (325)
T 3kul_A 31 TYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLR 71 (325)
T ss_dssp ------------CCBCCGGGEEEEEEEEETTTEEEEEEEEC
T ss_pred cccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEe
Confidence 45555555555443 488999999999999874
No 173
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=84.14 E-value=0.34 Score=48.39 Aligned_cols=18 Identities=56% Similarity=0.877 Sum_probs=16.0
Q ss_pred CCeeccCCCceEEEEEeC
Q 041089 693 SNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~ 710 (713)
...||+|+||+||+|...
T Consensus 49 ~~~lG~G~~g~Vy~~~~~ 66 (333)
T 1mqb_A 49 QKVIGAGEFGEVYKGMLK 66 (333)
T ss_dssp EEEEEECSSSEEEEEEEE
T ss_pred ccEEecCCCeEEEEEEEe
Confidence 588999999999999864
No 174
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=83.49 E-value=0.26 Score=50.95 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.9
Q ss_pred ccHHHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 678 VSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 678 ~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.++++...+++|....+||+|+||+||+|....
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~ 84 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQ 84 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETT
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECC
Confidence 4455666677889999999999999999998754
No 175
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=82.85 E-value=0.29 Score=50.48 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCcCCeeccCCCceEEEEEeCCC
Q 041089 680 YAELSKATKEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 680 ~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.++...+++|....+||+|+||+||+|...+.
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~ 93 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST 93 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTT
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCC
Confidence 344555677888899999999999999987553
No 176
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=81.38 E-value=0.54 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.5
Q ss_pred cCcCCeeccCCCceEEEEEeCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
|..-..||+|+||+||+|+-..
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~ 97 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRS 97 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETT
T ss_pred cEEeEEeecCcCeEEEEEEECC
Confidence 4445679999999999998643
No 177
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=80.95 E-value=0.47 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=19.4
Q ss_pred hccCcCCeeccCCCceEEEEEeCCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.|.-...||+|+||+||+|...++
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~ 59 (364)
T 3op5_A 35 AAWKVGLPIGQGGFGCIYLADMNSS 59 (364)
T ss_dssp CEEEEEEECCCC-CCEEEEEEECCS
T ss_pred CeEEEEEEEecCCCeEEEEeeecCc
Confidence 4456678999999999999987654
No 178
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=80.51 E-value=0.39 Score=49.68 Aligned_cols=25 Identities=4% Similarity=-0.019 Sum_probs=20.5
Q ss_pred HHhccCcCCeeccCCCceEEEEEeC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.+.+|...++||+|+||+||+|+-.
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~ 100 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQ 100 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEET
T ss_pred CceeEEEecccccCCCEEEEEEEec
Confidence 4455777889999999999999843
No 179
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=80.31 E-value=0.48 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=18.4
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.....||+|+||+||+|.-.
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~ 80 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDK 80 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEET
T ss_pred hheEeCcEeccCCCeEEEEEEEC
Confidence 34555678999999999999854
No 180
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=77.74 E-value=0.82 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.1
Q ss_pred cCcCCeeccCCCceEEEEEeCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
|..-..||+|+||+||+|.-..
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~ 174 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRS 174 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETT
T ss_pred cEeeeEeccCcCcEEEEEEECC
Confidence 5556789999999999998643
No 181
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=76.04 E-value=0.95 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.9
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
++|.....||+|+||.||+|+..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~ 67 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLK 67 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CB
T ss_pred hhceeeeEEeeCCCeEEEEEEEe
Confidence 35777899999999999999864
No 182
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=75.70 E-value=0.94 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.7
Q ss_pred hccCcCCeeccCCCceEEEEEeCCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
++|.-..+||+|+||+||+|+..++
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~ 76 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKT 76 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTT
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCC
Confidence 3567778999999999999987653
No 183
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=75.57 E-value=0.95 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.1
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.|.....||+|+||+||+|+..+
T Consensus 53 ~~y~~~~~lG~G~~g~Vy~~~~~~ 76 (349)
T 2w4o_A 53 DFFEVESELGRGATSIVYRCKQKG 76 (349)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETT
T ss_pred CcEEEeeEEeeCCCEEEEEEEECC
Confidence 456667899999999999998754
No 184
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=75.29 E-value=1 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.2
Q ss_pred cCcCCeeccCCCceEEEEEeC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~ 710 (713)
|.-...||+|+||+||+|.-.
T Consensus 56 Y~~~~~lG~G~fG~V~~a~~~ 76 (398)
T 4b99_A 56 YEIIETIGNGAYGVVSSARRR 76 (398)
T ss_dssp EEEEEEEEECSSCEEEEEEET
T ss_pred eEEEEEEecccCeEEEEEEEC
Confidence 444678999999999999753
No 185
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=75.04 E-value=0.38 Score=48.58 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=24.6
Q ss_pred ccHHHHHHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 678 VSYAELSKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 678 ~~~~~l~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+++++-....+.|.....||+|+||+||+|+-..
T Consensus 25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~ 58 (360)
T 3llt_A 25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHID 58 (360)
T ss_dssp CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETT
T ss_pred eeeecceEecCEEEEEEEEcccCCeEEEEEEECC
Confidence 3333333344667778999999999999998743
No 186
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=75.00 E-value=0.99 Score=49.23 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=20.2
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++|.-..+||+|+||+||+|.-.+
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~ 212 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKAD 212 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETT
T ss_pred HHeEEEEEEecccCeEEEEEEECC
Confidence 457778899999999999998644
No 187
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=74.55 E-value=1.4 Score=44.50 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHhccCcCCeeccCCCceEEEEEeCC
Q 041089 684 SKATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 684 ~~at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
....+.|.....||+|+||.||+|+...
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~ 117 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRA 117 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETT
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECC
Confidence 3445668888999999999999999853
No 188
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=74.17 E-value=1.2 Score=43.79 Aligned_cols=22 Identities=59% Similarity=0.881 Sum_probs=18.0
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+|+||+||+|...
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~ 58 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH 58 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS
T ss_pred ceEEEeEecCCCCeEEEEEEEC
Confidence 3455688999999999999764
No 189
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=73.88 E-value=1.1 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=18.3
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+|.-...||+|+||+||+|+..
T Consensus 72 ~~~~~~~LG~G~fg~Vy~~~~~ 93 (367)
T 3l9p_A 72 NITLIRGLGHGAFGEVYEGQVS 93 (367)
T ss_dssp GEEEEEECCCCSSSCEEEEEEC
T ss_pred HeEEeeEeeeCCCEEEEEEEEc
Confidence 4555788999999999999864
No 190
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=73.26 E-value=1.4 Score=44.71 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.5
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+|.-..+||+|+||+||+|.-.+
T Consensus 39 ~y~~~~~lG~G~fg~V~~~~~~~ 61 (373)
T 2r5t_A 39 DFHFLKVIGKGSFGKVLLARHKA 61 (373)
T ss_dssp GEEEEEEEECCTTCEEEEEEETT
T ss_pred heEEEEEEeeCCCeEEEEEEEcC
Confidence 46667899999999999998754
No 191
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=72.82 E-value=0.98 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=18.5
Q ss_pred HhccCcCCeeccCCCceEEEEE
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGN 708 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~ 708 (713)
.+.|.....||+|+||+||+|+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~ 85 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEAT 85 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEE
T ss_pred CEEEEEEEEeeccCCEEEEEEE
Confidence 3456667899999999999995
No 192
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=72.75 E-value=1.1 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=20.2
Q ss_pred hccCcCCeeccCCCceEEEEEeCCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.|.-...||+|+||+||+|...++
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~ 212 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKH 212 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTT
T ss_pred HHeEEEEEcccCCceEEEEEEECCc
Confidence 3455578899999999999998654
No 193
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=72.72 E-value=0.98 Score=45.83 Aligned_cols=19 Identities=47% Similarity=0.842 Sum_probs=16.2
Q ss_pred cCCeeccCCCceEEEEEeC
Q 041089 692 SSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 692 ~~~~iG~GgfG~VYk~~l~ 710 (713)
-..+||+|+||+||+|+..
T Consensus 93 ~~~~LG~G~fg~Vy~~~~~ 111 (373)
T 3c1x_A 93 FNEVIGRGHFGCVYHGTLL 111 (373)
T ss_dssp EEEEEECCSSSEEEEEEEE
T ss_pred cCcEeeeCCCeEEEEEEEE
Confidence 3568999999999999863
No 194
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=72.72 E-value=1.1 Score=46.22 Aligned_cols=22 Identities=41% Similarity=0.909 Sum_probs=18.4
Q ss_pred cCcCCeeccCCCceEEEEEeCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
|....+||+|+||+||+|+...
T Consensus 56 y~~~~~lG~G~fg~Vy~~~~~~ 77 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQAKLCD 77 (420)
T ss_dssp EEEEEEEEECSSEEEEEEEETT
T ss_pred EEeeeEEeeCCCEEEEEEEECC
Confidence 4456889999999999999754
No 195
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=72.28 E-value=1.2 Score=43.78 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=18.3
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+|.-...||+|+||+||+|+..
T Consensus 38 ~y~i~~~lG~G~~g~V~~~~~~ 59 (309)
T 3p86_A 38 DLNIKEKIGAGSFGTVHRAEWH 59 (309)
T ss_dssp GEEEEEEEEECSSEEEEEEEET
T ss_pred HceeeeEeecCCCeEEEEEEEC
Confidence 4556788999999999999763
No 196
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=72.11 E-value=1.2 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.3
Q ss_pred cCcCCeeccCCCceEEEEEeCCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
|.....||+|+||+||+|...+|
T Consensus 58 y~~~~~LG~G~fg~Vy~~~~~~~ 80 (390)
T 2zmd_A 58 YSILKQIGSGGSSKVFQVLNEKK 80 (390)
T ss_dssp EEEEEEEECCSSEEEEEEECTTC
T ss_pred eEEEEEEccCCCeEEEEEEcCCC
Confidence 66678999999999999986554
No 197
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=72.10 E-value=1.6 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=21.2
Q ss_pred HHhccCcCCeeccCCCceEEEEEeCC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
..+.|.-...||+|+||+||+|.-..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~ 158 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERK 158 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETT
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECC
Confidence 34567778899999999999997644
No 198
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=71.47 E-value=1.1 Score=45.64 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=20.6
Q ss_pred HhccCcCCeeccCCCceEEEEEeCC
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++.|.....||+|+||+||+|.-..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~ 77 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRV 77 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETT
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcC
Confidence 4567777899999999999998653
No 199
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=71.40 E-value=1.3 Score=43.85 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.6
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
++|.-...||+|+||+||+|...
T Consensus 46 ~~~~~~~~lG~G~~g~Vy~~~~~ 68 (333)
T 2i1m_A 46 NNLQFGKTLGAGAFGKVVEATAF 68 (333)
T ss_dssp TSEEEEEEEEECSSEEEEEEEET
T ss_pred HHceeeeEeccCCCcceEEEEec
Confidence 45667789999999999999864
No 200
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=71.11 E-value=1.3 Score=44.75 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=17.7
Q ss_pred ccCcCCeeccCCCceEEEEEe
Q 041089 689 EFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l 709 (713)
.|.-...||+|+||+||+|+.
T Consensus 82 ~~~~~~~LG~G~fg~Vy~a~~ 102 (370)
T 2psq_A 82 KLTLGKPLGEGCFGQVVMAEA 102 (370)
T ss_dssp GEEEEEEESCCSSSEEEEEEE
T ss_pred HCEeeeEEeeCCCeeEEEEEE
Confidence 455567899999999999975
No 201
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=70.95 E-value=1.4 Score=44.28 Aligned_cols=23 Identities=48% Similarity=0.600 Sum_probs=19.1
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|...+.||+|+||+||+|.-.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~ 76 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDV 76 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEET
T ss_pred hheeeeeEEccCCCEEEEEEEEc
Confidence 34667789999999999999853
No 202
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=70.92 E-value=1.3 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=19.2
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|.-...||+|+||.||+|....
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~~ 137 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLRA 137 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEETT
T ss_pred HeEEeeEeccCCCCeEEEEEEec
Confidence 45557889999999999999863
No 203
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=70.38 E-value=1.6 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=18.2
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.....||+|+||+||+|+-.
T Consensus 44 ~y~~~~~lg~G~~g~Vy~~~~~ 65 (320)
T 3a99_A 44 QYQVGPLLGSGGFGSVYSGIRV 65 (320)
T ss_dssp TEEEEEECSSSSSCEEEEEEET
T ss_pred ceEEEEEEeeCCCeEEEEEEEC
Confidence 3555788999999999999754
No 204
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=69.56 E-value=1.1 Score=45.96 Aligned_cols=23 Identities=39% Similarity=0.816 Sum_probs=18.8
Q ss_pred cCcCCeeccCCCceEEEEEeCCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
|....+||+|+||+||+|...++
T Consensus 42 Y~~~~~lG~G~~g~V~~a~~~~~ 64 (394)
T 4e7w_A 42 YTNCKVIGNGSFGVVFQAKLVES 64 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEETTT
T ss_pred EEEeEEEeeCCCeEEEEEEECCC
Confidence 44568899999999999987554
No 205
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=69.24 E-value=1.4 Score=44.70 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.3
Q ss_pred CcCCeeccCCCceEEEEEeCC
Q 041089 691 SSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~~ 711 (713)
....+||+|+||.||+|+...
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~ 112 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETA 112 (373)
T ss_dssp EEEEECC-----CEEEEEETT
T ss_pred ecceEEecCcCEEEEEEEEcC
Confidence 445789999999999998643
No 206
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=69.09 E-value=1.6 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.1
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+|.....||+|+||+||+|.-.
T Consensus 52 ~~~~~~~lG~G~~g~Vy~~~~~ 73 (340)
T 3an0_A 52 DLEPIMELGRGAYGVVEKMRHV 73 (340)
T ss_dssp CEEEEEEEEECSSEEEEEEEET
T ss_pred heeEeeEecccCCEEEEEEEEc
Confidence 4555678999999999999863
No 207
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=68.75 E-value=1.7 Score=41.40 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.3
Q ss_pred cCCeeccCCCceEEEEEe-CCC
Q 041089 692 SSNRIGKGSFGFVYKGNL-GEG 712 (713)
Q Consensus 692 ~~~~iG~GgfG~VYk~~l-~~g 712 (713)
-...||+|+||.||+|.. ++|
T Consensus 51 i~~~ig~G~~g~Vy~a~~~~~g 72 (258)
T 1zth_A 51 MGGVISTGKEANVFYADGVFDG 72 (258)
T ss_dssp EEEEEEECSSEEEEEEEEEETT
T ss_pred hCCEEeecceEEEEEEEEcCCC
Confidence 357899999999999987 444
No 208
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=68.37 E-value=1.9 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.8
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.|.....||+|+||.||+|+-..
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~ 64 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKE 64 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETT
T ss_pred HHCEEEEEeecCcCcEEEEEEECC
Confidence 346667899999999999998753
No 209
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=68.36 E-value=1.6 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.6
Q ss_pred ccCcCCeeccCCCceEEEEEeCCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
.|.-...||+|+||.||+|...++
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~~~ 208 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWNGT 208 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTT
T ss_pred HceeeeeecCCCCeEEEEEEECCC
Confidence 345567899999999999998653
No 210
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=68.29 E-value=1.5 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.1
Q ss_pred hccCcCCeeccCCCceEEEEEe
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l 709 (713)
++|.....||+|+||+||+|..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~ 75 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRK 75 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEE
Confidence 4567788999999999999986
No 211
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=68.17 E-value=1.9 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.0
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.|....+||+|+||.||+|....
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~ 208 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKA 208 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETT
T ss_pred hheEEEEEEeeCCCeEEEEEEECC
Confidence 456667889999999999998754
No 212
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=67.72 E-value=1.9 Score=42.70 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=18.3
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+|.-...||+|+||+||+|.-.
T Consensus 37 ~y~~~~~lg~G~~g~V~~~~~~ 58 (330)
T 3nsz_A 37 DYQLVRKLGRGKYSEVFEAINI 58 (330)
T ss_dssp GEEEEEEEEECSSEEEEEEEET
T ss_pred ceEEEEEecccCCeEEEEEEEC
Confidence 4556789999999999999753
No 213
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=67.46 E-value=1.8 Score=43.14 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.0
Q ss_pred HhccCcCCeeccCCCceEEEEEeC
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.++|.....||+|+||.||+|...
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~ 69 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAP 69 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEE
T ss_pred HHHCeeeeeeeecCCeeEEEEEec
Confidence 355667789999999999999874
No 214
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=67.40 E-value=1.5 Score=43.66 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.2
Q ss_pred ccCcCCeeccCCCceEEEEEeCCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
.|.....||+|+||.||+|.-.++
T Consensus 42 ~y~~~~~lg~G~~g~Vy~~~~~~~ 65 (335)
T 2owb_A 42 RYVRGRFLGKGGFAKCFEISDADT 65 (335)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTT
T ss_pred ceEEEEEEeeCCCeEEEEEEECCC
Confidence 345568899999999999987553
No 215
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=67.11 E-value=1.7 Score=43.92 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=19.2
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
..|.....||+|+||+||+|+-.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~ 84 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDV 84 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEET
T ss_pred eeeeeeeeccCCCCEEEEEEEEC
Confidence 34666789999999999999864
No 216
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=66.90 E-value=1.9 Score=41.72 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=18.3
Q ss_pred cCcCCeeccCCCceEEEEEeCCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.-...||+|+||.||+|..++|
T Consensus 92 ~~~~~~iG~G~~g~Vy~~~~~~g 114 (282)
T 1zar_A 92 DAIGKLMGEGKESAVFNCYSEKF 114 (282)
T ss_dssp SEEEEEEEECSSEEEEEEEETTT
T ss_pred EEecCEeccCCCceEEEEEeCCC
Confidence 33458999999999999987444
No 217
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=66.38 E-value=1.5 Score=44.55 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=18.7
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.....||+|+||+||+|+..
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~ 95 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQ 95 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-
T ss_pred ceEEEcceeecCCCEEEEEEEEC
Confidence 44566789999999999999864
No 218
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=66.10 E-value=2 Score=44.58 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=18.8
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|....+||+|+||+||+|.-..
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~ 120 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHK 120 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETT
T ss_pred cEEEEEEcccCccEEEEEEEECC
Confidence 35567899999999999997644
No 219
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=65.38 E-value=1.9 Score=43.94 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=19.7
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.|.-...||+|+||+||+|.-..
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~ 74 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKA 74 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETT
T ss_pred cceEEEEEEecCCCEEEEEEEECC
Confidence 346667889999999999998754
No 220
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=65.11 E-value=1.8 Score=43.11 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.2
Q ss_pred hccCcCCeeccCCCceEEEEEe
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l 709 (713)
++|.-...||+|+||+||+|+.
T Consensus 45 ~~y~~~~~lG~G~~g~V~~~~~ 66 (344)
T 1rjb_A 45 ENLEFGKVLGSGAFGKVMNATA 66 (344)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred HHceeeeeecCCCCceeEEeee
Confidence 4567788999999999999985
No 221
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=65.01 E-value=1.8 Score=43.26 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=13.0
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|.....||+|+||+||+|....
T Consensus 38 ~y~~~~~lg~G~~g~Vy~~~~~~ 60 (345)
T 2v62_A 38 QWVLGKKIGSGGFGLIYLAFPTN 60 (345)
T ss_dssp EEEEEEEC------CEEEEEESS
T ss_pred eEEEEeeEeecCCeEEEEEEecC
Confidence 45557889999999999998753
No 222
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=64.96 E-value=1.8 Score=43.96 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.5
Q ss_pred ccCcCCeeccCCCceEEEEEe
Q 041089 689 EFSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l 709 (713)
.|.-...||+|+||+||+|+.
T Consensus 70 ~y~i~~~LG~G~~g~Vy~a~~ 90 (382)
T 3tt0_A 70 RLVLGKPLGEGAFGQVVLAEA 90 (382)
T ss_dssp GEEEEEEEEECSSEEEEEEEE
T ss_pred heEeeeEEecCCCeEEEEEEE
Confidence 455567899999999999974
No 223
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=64.88 E-value=2.2 Score=43.16 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=18.4
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|.....||+|+||+||+|.-..
T Consensus 43 ~y~~~~~lG~G~~g~Vy~~~~~~ 65 (371)
T 4exu_A 43 TYVSPTHVGSGAYGSVCSAIDKR 65 (371)
T ss_dssp TEEEEEEEEECSSEEEEEEEETT
T ss_pred cEEEEeEEecCCCeEEEEEEECC
Confidence 35556789999999999997543
No 224
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=64.81 E-value=2 Score=42.65 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=18.2
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+|+||+||+|...
T Consensus 36 ~y~~~~~lG~G~~g~Vy~~~~~ 57 (334)
T 2pvf_A 36 KLTLGKPLGEGAFGQVVMAEAV 57 (334)
T ss_dssp GEEEEEEEEECSSCEEEEEEET
T ss_pred HeEEeeEEeecCceeEEEeEec
Confidence 4555788999999999999863
No 225
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=64.20 E-value=2 Score=46.15 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=20.7
Q ss_pred HhccCcCCeeccCCCceEEEEEeCC
Q 041089 687 TKEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 687 t~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.+.|....+||+|+||.||+|....
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~ 207 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRA 207 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETT
T ss_pred ccceEEEEEEeeCCCEEEEEEEECC
Confidence 3457778899999999999998753
No 226
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=64.06 E-value=2.3 Score=43.30 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.7
Q ss_pred ccCcCCeeccCCCceEEEEEeCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
.|.-...||+|+||+||+|.-..
T Consensus 38 ~y~~~~~lg~G~~g~V~~~~~~~ 60 (397)
T 1wak_A 38 RYHVIRKLGWGHFSTVWLSWDIQ 60 (397)
T ss_dssp TEEEEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEEeeecCCeeEEEEEecC
Confidence 45567889999999999997543
No 227
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=64.00 E-value=2.1 Score=42.47 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=21.1
Q ss_pred HHhccCcCCeeccCCCceEEEEEeC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
..+.|.-...||+|+||.||+|+..
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~ 59 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR 59 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET
T ss_pred cccceEEEeEeecCCCeEEEEEEEC
Confidence 3456788899999999999999864
No 228
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=63.91 E-value=2.3 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.3
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++|....+||+|+||+||+|...+
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~~ 364 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERKG 364 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEESS
T ss_pred cceEEEEEEccCCCEEEEEEEECC
Confidence 457777899999999999998754
No 229
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=62.95 E-value=2.2 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.6
Q ss_pred ccCcCCeeccCCCceEEEEEeCCC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
.|.-...||+|+||.||+|...++
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~~ 291 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNGT 291 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTT
T ss_pred hhhhheecccCCCeEEEEEEECCC
Confidence 355577899999999999988653
No 230
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=62.68 E-value=1.8 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=18.4
Q ss_pred cCcCCeeccCCCceEEEEEeCC
Q 041089 690 FSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
|.....||+|+||.||+|+..+
T Consensus 222 ~~~~~~lG~G~fg~Vy~~~~~~ 243 (495)
T 1opk_A 222 ITMKHKLGGGQYGEVYEGVWKK 243 (495)
T ss_dssp EEEEEESGGGTTSSEEEEEEGG
T ss_pred ceeeeEecCCCCeEEEEEEEcC
Confidence 4556889999999999998754
No 231
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=62.60 E-value=2.3 Score=44.32 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=19.9
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
+.|.....||+|+||.||+|.-..
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~ 171 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKA 171 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETT
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcC
Confidence 457778899999999999998543
No 232
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=62.29 E-value=2.7 Score=44.64 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=17.7
Q ss_pred hccCcCCeeccCCCceEEEEEeCCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGEG 712 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~g 712 (713)
+.|.....||+|+||+||+|+-..+
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~~~~ 60 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKEKNG 60 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEETTT
T ss_pred cceEEEeEecccCCeEEEEEEECCC
Confidence 3455578899999999999986543
No 233
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=62.24 E-value=2.5 Score=44.12 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=18.6
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+|+||.||+|...
T Consensus 194 ~~~~~~~lG~G~fg~V~~~~~~ 215 (450)
T 1k9a_A 194 ELKLLQTIGKGEFGDVMLGDYR 215 (450)
T ss_dssp GEEEEEEEEECSSEEEEEEEET
T ss_pred HeEEEeeecCcCCeeEEEEEec
Confidence 4555789999999999999875
No 234
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=61.23 E-value=2.7 Score=43.93 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=12.0
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.....||+|+||+||+|.-.
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~ 75 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDK 75 (458)
T ss_dssp TTEEECCC-------CEEEEEEC
T ss_pred CCeEEeeEeeecCCeEEEEEEEC
Confidence 34666789999999999999754
No 235
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=60.24 E-value=3.5 Score=41.69 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.0
Q ss_pred CCeeccCCCceEEEEEeCCCC
Q 041089 693 SNRIGKGSFGFVYKGNLGEGG 713 (713)
Q Consensus 693 ~~~iG~GgfG~VYk~~l~~g~ 713 (713)
...||+|+||.||+|.-++|.
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G~ 120 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKGK 120 (397)
T ss_dssp EEEEEECSSEEEEEEECTTCC
T ss_pred cCEeeeCCceEEEEEECCCCC
Confidence 567999999999999877763
No 236
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=60.16 E-value=3.3 Score=45.60 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.1
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+|+||+||+|...
T Consensus 391 ~y~i~~~LG~G~fG~Vy~a~~~ 412 (656)
T 2j0j_A 391 RIELGRCIGEGQFGDVHQGIYM 412 (656)
T ss_dssp GEEEEEEEECCSSCCEEEEEEC
T ss_pred cEEEeeEEeeCCCEEEEEEEEe
Confidence 3555678999999999999874
No 237
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=59.09 E-value=2.8 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.6
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.-...||+|+||+||+|.-.
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~ 179 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTER 179 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEET
T ss_pred cccEEEEEEeeccCeEEEEEEEC
Confidence 34555678999999999999864
No 238
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=58.47 E-value=2.6 Score=42.19 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=19.7
Q ss_pred hccCcCCeeccCCCceEEEEEeCC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~~ 711 (713)
++|.-...||+|+||+||+|+...
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~ 65 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTS 65 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC
T ss_pred CeEEEEEEecCCCCeEEEEEeecC
Confidence 346667899999999999998753
No 239
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=58.17 E-value=3.5 Score=42.13 Aligned_cols=18 Identities=22% Similarity=0.088 Sum_probs=15.7
Q ss_pred CeeccCCCceEEEEEeCC
Q 041089 694 NRIGKGSFGFVYKGNLGE 711 (713)
Q Consensus 694 ~~iG~GgfG~VYk~~l~~ 711 (713)
.+||+|+||+||+|.-..
T Consensus 68 ~~LG~G~~g~V~~~~~~~ 85 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKR 85 (400)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred ceeeeccCeEEEEEEECC
Confidence 679999999999998653
No 240
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=57.99 E-value=3.4 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=21.1
Q ss_pred HHhccCcCCeeccCCCceEEEEEeC
Q 041089 686 ATKEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 686 at~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
..+.|.-...||+|+||+||+|+..
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~~ 64 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKWR 64 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET
T ss_pred ccccEEEEeeecCCCCcEEEEEEEc
Confidence 3456888899999999999999863
No 241
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=56.38 E-value=3.4 Score=45.23 Aligned_cols=16 Identities=44% Similarity=0.818 Sum_probs=14.3
Q ss_pred CeeccCCCceEEEEEe
Q 041089 694 NRIGKGSFGFVYKGNL 709 (713)
Q Consensus 694 ~~iG~GgfG~VYk~~l 709 (713)
..||+|+||+||+|..
T Consensus 375 ~~LG~G~fG~Vy~~~~ 390 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYY 390 (635)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred CEeccCCCEEEEEEEE
Confidence 4799999999999965
No 242
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=55.47 E-value=4 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.4
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.....||+|+||+||+|.-.
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~ 59 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDK 59 (494)
T ss_dssp HEEEEEEEECC---EEEEEEET
T ss_pred CeEEeeEEecCCCEEEEEEEEC
Confidence 3556788999999999999864
No 243
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=55.33 E-value=4.3 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.5
Q ss_pred hccCcCCeeccCCCceEEEEEeC
Q 041089 688 KEFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 688 ~~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
+.|.....||+|+||+||+|.-.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~ 84 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDA 84 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEET
T ss_pred CCeEEEEEeecCCCeEEEEEEEC
Confidence 34566788999999999999743
No 244
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=53.13 E-value=4.9 Score=42.96 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=9.5
Q ss_pred CcCCeeccCCCceEEEEEeC
Q 041089 691 SSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 691 ~~~~~iG~GgfG~VYk~~l~ 710 (713)
-+.++||+|+||+||||...
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~ 358 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL 358 (540)
T ss_dssp ---------CCEEEEEEECS
T ss_pred CCCCEEeeCCCEEEEEEEEC
Confidence 44678999999999999654
No 245
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=52.17 E-value=4.4 Score=39.88 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=16.9
Q ss_pred cCcCCeeccCCCceEEEEEe
Q 041089 690 FSSSNRIGKGSFGFVYKGNL 709 (713)
Q Consensus 690 f~~~~~iG~GgfG~VYk~~l 709 (713)
|.-...||+|+||.||+|..
T Consensus 43 y~~~~~lg~G~~g~V~~~~~ 62 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRY 62 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEE
T ss_pred ceeeeeeccCCCeEEEEEEe
Confidence 44467899999999999985
No 246
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=52.05 E-value=5.6 Score=43.33 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=14.3
Q ss_pred eeccCCCceEEEEEeC
Q 041089 695 RIGKGSFGFVYKGNLG 710 (713)
Q Consensus 695 ~iG~GgfG~VYk~~l~ 710 (713)
.||+|+||.||+|+..
T Consensus 343 ~LG~G~fG~Vy~~~~~ 358 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYR 358 (613)
T ss_dssp EEEECSSSEEEEEEEE
T ss_pred EEecCCCcEEEEEEEe
Confidence 6999999999999763
No 247
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.70 E-value=30 Score=26.92 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=16.4
Q ss_pred ccCcCCCCCceeeCcCCcccccCCcccccCCCCCEEeC
Q 041089 519 VTLSACTTLEYLLMQGNSFNGSIPQSLNALKSIKELDL 556 (713)
Q Consensus 519 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L 556 (713)
.+|.+|++|+.+.|-.+ ++.+...+|.++.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34445555555544432 22233344444444444444
No 248
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=51.14 E-value=4.2 Score=26.10 Aligned_cols=7 Identities=29% Similarity=0.581 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 041089 653 VVYTRRT 659 (713)
Q Consensus 653 ~~~~~~~ 659 (713)
+++++||
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3334333
No 249
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.99 E-value=48 Score=25.72 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=36.6
Q ss_pred CCCCCCccccCCCCCcEEeCCCCcCCccCcccCcCCCCCceeeCcCCc
Q 041089 489 FSGSIPLEVGNLKSLVQLDISRNHFSNEIPVTLSACTTLEYLLMQGNS 536 (713)
Q Consensus 489 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ls~n~ 536 (713)
++..-..+|.+|.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+....
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 44445567889999999999875 454566789999999999997653
No 250
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.85 E-value=4.1 Score=26.07 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=3.7
Q ss_pred Hhhhhhhhc
Q 041089 652 IVVYTRRTK 660 (713)
Q Consensus 652 ~~~~~~~~~ 660 (713)
+++|.+||+
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 344444443
No 251
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=40.85 E-value=6.6 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=18.3
Q ss_pred ccCcCCeeccCCCceEEEEEeC
Q 041089 689 EFSSSNRIGKGSFGFVYKGNLG 710 (713)
Q Consensus 689 ~f~~~~~iG~GgfG~VYk~~l~ 710 (713)
.|.-...||+||||+||+|+..
T Consensus 81 ~y~i~~~lg~G~~g~Vy~a~~~ 102 (681)
T 2pzi_A 81 QYEVKGCIAHGGLGWIYLALDR 102 (681)
T ss_dssp TEEEEEEEEEETTEEEEEEEEG
T ss_pred ceEEEEEEeeCCCeEEEEEEEc
Confidence 4555788999999999999864
No 252
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=37.78 E-value=23 Score=22.71 Aligned_cols=7 Identities=57% Similarity=0.990 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 041089 653 VVYTRRT 659 (713)
Q Consensus 653 ~~~~~~~ 659 (713)
++|++||
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344333
Done!