BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041090
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%)
Query: 70 VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
+ +A + + ++ AV++TDA+ ++ GI T++D+ V +G Q VS MT+N +
Sbjct: 46 IGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVR 105
Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQ 182
+S + ++ M G+FRH+PV ENG + I+ I + I +E AE
Sbjct: 106 CQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEH 158
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 63 TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
T+ + V DA + MA + + A+L+ D + + +GIVT++D +V+ + T V +I
Sbjct: 25 TVTKNDFVYDAIKLMAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEI 83
Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDI 165
MT +V E + M + + RHLPV++ G++I ++ I
Sbjct: 84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISI 126
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVER 289
+ V+ +D V A K M E + L+V G I GI+T +D +VV Q S + T VE
Sbjct: 23 IYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEE 82
Query: 290 FI 291
+
Sbjct: 83 IM 84
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 155 ENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRER 214
++G I + +YDAI M AE+G V+G + G YA L+ER
Sbjct: 18 DSGRTIYTVTKNDFVYDAIKLM---AEKGIGALLVVDG-DDIAGIVTERDYARKVVLQER 73
Query: 215 MFKPS-LSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273
K + + I+T AKV V PS M E R ++ G K+ G+++ D++
Sbjct: 74 SSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVK 131
Query: 274 RVVAQN 279
V+A
Sbjct: 132 SVIADQ 137
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 51 RTVKKLRLSKALTI----PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106
+TVK L K T+ P+ ++ + A ++MA+ + A+L+ L+ GI+T++D + +
Sbjct: 6 KTVKHLLQEKGHTVVAIGPDDSVFN-AMQKMAADNIGALLVMKDEKLV-GILTERDFSRK 63
Query: 107 VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDIT 166
T V +IMTR +V ++ + + + + + RHLPV+++G+VI +L I
Sbjct: 64 SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIG 123
Query: 167 KCLYDAISRME 177
+ DAIS+ +
Sbjct: 124 DLVKDAISQHQ 134
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
+K K L + T V +A R V ++++ + + + G T DI RVI GL
Sbjct: 9 IKVYXTKKLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 68
Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172
P V +I TRN I ++ E L+K + + +H+ + E G+++ I ++ L +
Sbjct: 69 -PYDIPVERIXTRNLITANVNTPLGEVLRKXAEHRIKHILIEEEGKIVGIFTLSDLLEAS 127
Query: 173 ISRMEKA 179
R+E A
Sbjct: 128 RRRLETA 134
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
K +V P D V AK + ++ SA++ G +I G++T +D+L +VVA+ +P+ VE
Sbjct: 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVXEGDEILGVVTERDILDKVVAKGKNPKEVKVE 60
Query: 289 RF 290
Sbjct: 61 EI 62
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
KA+ + V + ++ + + ++ + + +L G+VT++DI +V+A+G P + V
Sbjct: 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVXEGDEIL-GVVTERDILDKVVAKGKNPKEVKV 59
Query: 120 SKIMTRNPI 128
+I T+NP+
Sbjct: 60 EEIXTKNPV 68
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
VK+ ++ +++ + ++D + + + +V++ D N + GI+T++DI + I +G
Sbjct: 6 VKEYXKTQVISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKPV-GIITERDIV-KAIGKG- 62
Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKC 168
+ +T + T + I + DS AL Q RHLPVV++ +I+I DIT+
Sbjct: 63 KSLETKAEEFXTASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
Query: 169 LYD 171
+ D
Sbjct: 123 IDD 125
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
T + + + + E ++ A + M + A+ + + L G++TD+DI + +A G
Sbjct: 9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG 68
Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKC 168
L P+ ++ + +V +++ E L M + + R +PV+ ++ I+ DI +
Sbjct: 69 LDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH 128
Query: 169 L 169
L
Sbjct: 129 L 129
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 227 NAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVLMRVVAQNLSP 282
NA V V + + AA+ MRE AL + G ++ G+LT +D++++ +A L P
Sbjct: 15 NAGVTCVGEHETLTAAAQYMRE-HDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDP 71
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVD-AVLLTDANALLSGIVTDKDITTRVIAEG 111
V+++ +T+ E + +A ++ V A ++ D N L+S ++T++D+ R + +
Sbjct: 86 VREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLIS-LITERDVI-RALLDK 143
Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKC 168
+ ++ V+ +TR+ I T + + MV+ FR LPVV G ++ I+ D K
Sbjct: 144 IDENE-VIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKL 202
Query: 169 L 169
L
Sbjct: 203 L 203
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 68 TIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG-------LRPD----- 115
T V DA + ++V + + D N L G+V+D D+ G L PD
Sbjct: 23 TSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW 82
Query: 116 ------QTVVSK--------IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVI 160
Q ++SK + T +P+ V + +A + +++ KFR LPVV+ +G++I
Sbjct: 83 KTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLI 142
Query: 161 AIL 163
IL
Sbjct: 143 GIL 145
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106
+ VK+L + +T+PE V +A + M R+D + + D L G++T D+ R
Sbjct: 150 KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR 205
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 54 KKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR 113
++L + +TI V A M +D + + + ++ GI+T KDI R EG
Sbjct: 96 ERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVV-GIITKKDIAAR---EG-- 149
Query: 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCL 169
+V ++MT+ I V EAL+ M++ + LPVV E G+++ ++ ++ +
Sbjct: 150 ---KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203
>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
pdb|1Y5H|B Chain B, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
Length = 133
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 94 LSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPV 153
L G +TD+DI + +A GL P+ ++ + +V +++ E L + + R +PV
Sbjct: 51 LHGXLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEXLNVXEEHQVRRVPV 110
Query: 154 VENGEVIAIL---DITKCL 169
+ ++ I+ DI + L
Sbjct: 111 ISEHRLVGIVTEADIARHL 129
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 227 NAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVLMRVVAQNLSP 282
NA V V + + AA+ RE AL + G ++ G LT +D++++ +A L P
Sbjct: 15 NAGVTCVGEHETLTAAAQYXRE-HDIGALPICGDDDRLHGXLTDRDIVIKGLAAGLDP 71
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
+T P GT +S+A + + +++ + L D N +L G++T KDI + D+ +
Sbjct: 187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQ--GR 244
Query: 122 IMTRNPIFVTSDSLA-IEALQK 142
++ + VT+D++ I+AL K
Sbjct: 245 LLVGAAVGVTADAMTRIDALVK 266
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
+ R+P+ VT + IE LQ + F PVVE GE++ I+
Sbjct: 94 IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 134
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
K +T EGT + + ++ R++ +L+ D N L G+VT +DI
Sbjct: 158 KLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCL 169
T+V I+++ PI S+ +EA + +++ HLP+V E+G+++ I+ DI K L
Sbjct: 3 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 59
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 70 VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
+ +A + + ++ + + D + L GI+T DI A+ L ++ + +IMTRN I
Sbjct: 22 IMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI-----AKALAQNKKTIEEIMTRNVIT 76
Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVEN 156
D KM + +PVV++
Sbjct: 77 AHEDEPVDHVAIKMSKYNISGVPVVDD 103
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
+ R+P+ VT + IE LQ + F PVVE GE++ I+
Sbjct: 114 IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 154
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
K +T EGT + + ++ R++ +L+ D N L G+VT +DI
Sbjct: 178 KLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCL 169
T+V I+++ PI S+ +EA + +++ HLP+V E+G+++ I+ DI K L
Sbjct: 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 57
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 70 VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
+ +A + + ++ + + D + L GI+T DI A+ L ++ + +IMTRN I
Sbjct: 20 IMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI-----AKALAQNKKTIEEIMTRNVIT 74
Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVEN 156
D KM + +PVV++
Sbjct: 75 AHEDEPVDHVAIKMSKYNISGVPVVDD 101
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
+T P GT +S+A + + +++ + L D N +L G++T KDI
Sbjct: 187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 68 TIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-----------TTRVIAEGL-RPD 115
T V +A + R+ + D + L G+V+D D+ T + + L + +
Sbjct: 24 TTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTN 83
Query: 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAIL 163
+V +MT P+ V + +A + +++ K+R LPVV+ +G+++ I+
Sbjct: 84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGII 132
>pdb|3OCO|A Chain A, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
pdb|3OCO|B Chain B, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
Length = 153
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
+++PE V D ++ RV ++ D SGI+TDKD+ + LR +Q
Sbjct: 96 VSVPENXKVPDVXEEXSAHRVPXAIVIDEYGGTSGIITDKDVYEELFG-NLRDEQ 149
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILD 164
S+IM +P++V D+ EAL+ M+ + +PVV E GE++ L+
Sbjct: 99 SEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN 143
>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
Length = 253
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSAL 255
A LR+R F ++ V I++ +DPV A ++E +SAL
Sbjct: 31 ALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGSSAL 80
>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
Avium
Length = 270
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSAL 255
A LR+R F ++ V I++ +DPV A ++E +SAL
Sbjct: 48 ALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGSSAL 97
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCL 169
V IMT+NP+ +T + AL+ + K R PVV + G+++ I+ + + L
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL 54
>pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1ZIS|A Chain A, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|B Chain B, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|C Chain C, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|D Chain D, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|E Chain E, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|F Chain F, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|G Chain G, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|H Chain H, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|I Chain I, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|J Chain J, Recombinant Lumazine Synthase (hexagonal Form)
Length = 154
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 225 TENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLS 281
T + VA V + + AAKKM E + A+I G+ I+G T D + A+ ++
Sbjct: 45 TNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIA 101
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 107 VIAEGLRPDQ-----TVVSKI---MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENG 157
+I + L PD+ ++V K + +PI VT D EA+ M + K LPVV E G
Sbjct: 77 IIHKNLTPDEQARQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG 136
Query: 158 EVIAIL 163
++ +L
Sbjct: 137 RLVGLL 142
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAIL 163
+V +MT P+ V + +A + +++ K+R LPVV+ +G+++ I+
Sbjct: 100 LVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGII 146
>pdb|2C3V|B Chain B, Structure Of Iodinated Cbm25 From Bacillus Halodurans
Amylase
pdb|2C3W|A Chain A, Structure Of Cbm25 From Bacillus Halodurans Amylase In
Complex With Maltotetraose
pdb|2C3W|B Chain B, Structure Of Cbm25 From Bacillus Halodurans Amylase In
Complex With Maltotetraose
pdb|2C3W|C Chain C, Structure Of Cbm25 From Bacillus Halodurans Amylase In
Complex With Maltotetraose
pdb|2C3W|D Chain D, Structure Of Cbm25 From Bacillus Halodurans Amylase In
Complex With Maltotetraose
pdb|2C3X|A Chain A, Structure Of Iodinated Cbm25 From Bacillus Halodurans
Amylase In Complex With Maltotetraose
pdb|2C3X|B Chain B, Structure Of Iodinated Cbm25 From Bacillus Halodurans
Amylase In Complex With Maltotetraose
Length = 102
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 108 IAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITK 167
+A G D T+ K +P S + QG + LP V +TK
Sbjct: 4 MASGDATDITIYYKTGWTHPHIHYS----------LNQGAWTTLPGVP---------LTK 44
Query: 168 CLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAF 207
Y+ ++ AE+GS + AA QW +N Y F
Sbjct: 45 SEYEGYVKVTIEAEEGSQLRAAFNNGSGQWDNNQGRDYDF 84
>pdb|1MQ9|A Chain A, Crystal Structure Of High Affinity Alphal I Domain With
Ligand Mimetic Crystal Contact
pdb|1MQA|A Chain A, Crystal Structure Of High Affinity Alphal I Domain In The
Absence Of Ligand Or Metal
Length = 180
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 20/93 (21%)
Query: 103 ITTRVIAE--GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQ---GKFRHLPVVEN- 156
+ T V E G RPD T V I+T +DS I+A + +++ G +H E+
Sbjct: 89 VATEVFREELGARPDATKVLIIITDGE---ATDSGNIDAAKDIIRYIIGIGKHFQTKESQ 145
Query: 157 -----------GEVIAILDITKCLYDAISRMEK 178
E + ILD +CL D + ++K
Sbjct: 146 ETLHKFASKPASEFVCILDTFECLKDLFTELQK 178
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 67 GTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126
GT + A R + R++ + L D + LSG++T KDI +VI E + +++
Sbjct: 169 GTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI-EKVI-EFPHAAKDEFGRLLVAA 226
Query: 127 PIFVTSDSL 135
+ VTSD+
Sbjct: 227 AVGVTSDTF 235
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV 275
I+S D + A KK+ E +IV KI+G+LT++D+L V
Sbjct: 32 ILSKEDRLGSAFKKINE-GGIGRIIVANEKIEGLLTTRDLLSTV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,461,420
Number of Sequences: 62578
Number of extensions: 216457
Number of successful extensions: 740
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 65
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)