Query 041090
Match_columns 294
No_of_seqs 229 out of 3049
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 1.6E-19 3.4E-24 147.0 12.6 122 48-173 169-291 (294)
2 COG2524 Predicted transcriptio 99.8 9.4E-19 2E-23 142.5 12.0 124 113-277 168-292 (294)
3 COG3448 CBS-domain-containing 99.8 3.6E-18 7.9E-23 141.6 11.8 130 46-175 240-374 (382)
4 COG3620 Predicted transcriptio 99.7 1.4E-17 3E-22 126.0 10.6 121 49-172 63-183 (187)
5 COG3448 CBS-domain-containing 99.7 3.5E-17 7.7E-22 135.8 9.5 132 114-280 242-375 (382)
6 PRK14869 putative manganese-de 99.7 3.6E-16 7.9E-21 147.7 15.9 211 50-273 67-301 (546)
7 COG3620 Predicted transcriptio 99.7 2.3E-16 5.1E-21 119.4 11.2 120 116-275 64-183 (187)
8 PRK10892 D-arabinose 5-phospha 99.7 3.9E-16 8.4E-21 138.4 14.6 122 49-171 200-323 (326)
9 cd04630 CBS_pair_17 The CBS do 99.7 2.2E-15 4.8E-20 112.6 13.9 111 60-170 2-113 (114)
10 cd04619 CBS_pair_6 The CBS dom 99.7 2.2E-15 4.8E-20 112.7 13.3 110 61-170 3-113 (114)
11 TIGR00400 mgtE Mg2+ transporte 99.6 3E-15 6.4E-20 137.8 14.7 170 47-272 127-302 (449)
12 PRK11543 gutQ D-arabinose 5-ph 99.6 3E-15 6.6E-20 132.5 13.8 120 50-171 196-318 (321)
13 cd04641 CBS_pair_28 The CBS do 99.6 5.6E-15 1.2E-19 111.5 13.2 111 60-170 2-119 (120)
14 cd04618 CBS_pair_5 The CBS dom 99.6 2.9E-15 6.3E-20 109.1 11.2 93 60-170 2-97 (98)
15 cd04623 CBS_pair_10 The CBS do 99.6 9E-15 1.9E-19 108.8 14.2 111 60-170 2-112 (113)
16 COG2905 Predicted signal-trans 99.6 2E-15 4.3E-20 135.8 12.3 124 48-172 146-269 (610)
17 PRK07807 inosine 5-monophospha 99.6 1.8E-14 4E-19 132.2 18.7 119 48-173 86-205 (479)
18 cd04603 CBS_pair_KefB_assoc Th 99.6 8.7E-15 1.9E-19 109.0 13.2 108 60-170 2-110 (111)
19 cd04617 CBS_pair_4 The CBS dom 99.6 1.5E-14 3.3E-19 108.9 13.6 110 60-170 2-117 (118)
20 cd04593 CBS_pair_EriC_assoc_ba 99.6 2.8E-14 6E-19 106.8 13.7 110 60-170 2-114 (115)
21 cd04608 CBS_pair_PALP_assoc Th 99.6 9.2E-15 2E-19 111.2 10.4 112 59-171 2-123 (124)
22 cd04600 CBS_pair_HPP_assoc Thi 99.6 2.2E-14 4.7E-19 108.7 12.4 112 59-170 2-123 (124)
23 cd04621 CBS_pair_8 The CBS dom 99.6 3.6E-14 7.7E-19 109.6 13.7 111 60-170 2-134 (135)
24 PRK15094 magnesium/cobalt effl 99.6 2.3E-14 4.9E-19 124.4 13.5 126 47-176 63-192 (292)
25 TIGR03520 GldE gliding motilit 99.6 2.1E-14 4.5E-19 130.4 13.2 122 47-174 187-312 (408)
26 cd04629 CBS_pair_16 The CBS do 99.6 3.1E-14 6.7E-19 106.2 12.0 111 60-170 2-113 (114)
27 PRK05567 inosine 5'-monophosph 99.6 5.2E-14 1.1E-18 130.7 15.6 114 52-171 88-203 (486)
28 cd04625 CBS_pair_12 The CBS do 99.6 8.2E-14 1.8E-18 103.6 13.8 110 60-170 2-111 (112)
29 cd04643 CBS_pair_30 The CBS do 99.6 4.2E-14 9E-19 105.8 12.2 109 60-170 2-115 (116)
30 PRK01862 putative voltage-gate 99.6 3.3E-14 7.1E-19 135.1 14.5 126 47-173 443-571 (574)
31 KOG1764 5'-AMP-activated prote 99.6 6.2E-14 1.3E-18 125.3 15.2 190 60-280 163-363 (381)
32 cd04603 CBS_pair_KefB_assoc Th 99.6 3.2E-14 7E-19 105.9 11.4 106 126-272 2-109 (111)
33 cd04607 CBS_pair_NTP_transfera 99.6 8.3E-14 1.8E-18 103.8 13.6 108 60-169 3-111 (113)
34 cd04587 CBS_pair_CAP-ED_DUF294 99.6 5.7E-14 1.2E-18 104.6 12.4 110 60-170 2-112 (113)
35 PRK10892 D-arabinose 5-phospha 99.6 3E-14 6.5E-19 126.3 12.7 121 115-274 200-323 (326)
36 cd04622 CBS_pair_9 The CBS dom 99.6 9.3E-14 2E-18 103.4 13.5 110 60-170 2-112 (113)
37 cd04803 CBS_pair_15 The CBS do 99.6 5.8E-14 1.3E-18 106.1 12.4 111 60-170 2-121 (122)
38 cd04615 CBS_pair_2 The CBS dom 99.6 8.4E-14 1.8E-18 103.7 13.0 110 60-170 2-112 (113)
39 cd04614 CBS_pair_1 The CBS dom 99.6 4.3E-14 9.4E-19 102.5 11.0 93 60-170 2-95 (96)
40 cd04618 CBS_pair_5 The CBS dom 99.6 5.8E-14 1.2E-18 102.2 11.6 91 126-272 2-96 (98)
41 cd04800 CBS_pair_CAP-ED_DUF294 99.6 1.3E-13 2.8E-18 102.3 13.7 109 60-170 2-110 (111)
42 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 1E-13 2.2E-18 103.2 13.1 110 60-170 2-113 (114)
43 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 3.5E-13 7.6E-18 123.7 19.1 118 48-173 85-203 (475)
44 cd04627 CBS_pair_14 The CBS do 99.6 8.8E-14 1.9E-18 105.4 12.8 110 60-169 2-121 (123)
45 cd04639 CBS_pair_26 The CBS do 99.6 8.4E-14 1.8E-18 103.4 12.2 108 60-170 2-110 (111)
46 cd04605 CBS_pair_MET2_assoc Th 99.6 1.8E-13 3.9E-18 101.4 13.9 107 59-170 2-109 (110)
47 cd04586 CBS_pair_BON_assoc Thi 99.6 5.3E-14 1.1E-18 108.5 11.4 112 59-170 2-134 (135)
48 COG4109 Predicted transcriptio 99.6 3E-14 6.4E-19 121.3 10.7 152 84-283 157-313 (432)
49 cd04595 CBS_pair_DHH_polyA_Pol 99.6 1.8E-13 3.8E-18 101.5 13.8 108 59-170 2-109 (110)
50 cd04589 CBS_pair_CAP-ED_DUF294 99.6 1.8E-13 3.9E-18 101.6 13.8 109 60-170 2-110 (111)
51 cd04626 CBS_pair_13 The CBS do 99.6 1.5E-13 3.2E-18 102.1 13.2 109 60-170 2-110 (111)
52 cd04642 CBS_pair_29 The CBS do 99.6 7.6E-14 1.6E-18 106.3 11.9 110 60-170 2-125 (126)
53 cd04636 CBS_pair_23 The CBS do 99.5 1.2E-13 2.6E-18 106.0 13.0 110 60-170 2-131 (132)
54 cd04617 CBS_pair_4 The CBS dom 99.5 1.1E-13 2.4E-18 104.1 12.5 110 126-272 2-116 (118)
55 cd04624 CBS_pair_11 The CBS do 99.5 2.1E-13 4.6E-18 101.3 13.8 109 60-170 2-111 (112)
56 cd04630 CBS_pair_17 The CBS do 99.5 1.3E-13 2.9E-18 102.9 12.7 110 126-273 2-113 (114)
57 cd04640 CBS_pair_27 The CBS do 99.5 1.4E-13 3E-18 104.9 12.9 111 60-170 2-125 (126)
58 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 1.5E-13 3.3E-18 102.3 12.8 110 60-170 3-113 (114)
59 cd04802 CBS_pair_3 The CBS dom 99.5 2.8E-13 6.1E-18 100.7 14.2 110 60-170 2-111 (112)
60 cd04631 CBS_pair_18 The CBS do 99.5 1.1E-13 2.4E-18 104.9 12.2 110 60-170 2-124 (125)
61 cd04619 CBS_pair_6 The CBS dom 99.5 1.6E-13 3.6E-18 102.5 12.7 108 127-272 3-112 (114)
62 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 2E-13 4.3E-18 100.5 12.7 103 60-170 2-105 (106)
63 cd04801 CBS_pair_M50_like This 99.5 1.4E-13 3.1E-18 102.7 12.0 108 60-170 2-113 (114)
64 PRK11543 gutQ D-arabinose 5-ph 99.5 8.1E-14 1.8E-18 123.4 12.4 119 116-274 196-318 (321)
65 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2.9E-13 6.2E-18 100.0 13.4 106 59-170 2-108 (109)
66 cd04632 CBS_pair_19 The CBS do 99.5 1.6E-13 3.4E-18 104.8 12.2 111 60-170 2-127 (128)
67 cd04641 CBS_pair_28 The CBS do 99.5 9.7E-14 2.1E-18 104.7 10.7 115 126-272 2-118 (120)
68 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 3E-13 6.5E-18 100.2 13.2 108 60-170 2-110 (111)
69 cd04596 CBS_pair_DRTGG_assoc T 99.5 2.3E-13 5E-18 100.6 12.5 105 59-170 2-107 (108)
70 PRK15094 magnesium/cobalt effl 99.5 1.5E-13 3.3E-18 119.2 12.9 142 96-281 48-194 (292)
71 cd04607 CBS_pair_NTP_transfera 99.5 2.9E-13 6.3E-18 100.9 12.4 107 126-272 3-111 (113)
72 cd04620 CBS_pair_7 The CBS dom 99.5 4E-13 8.7E-18 100.4 13.1 109 60-170 2-114 (115)
73 cd04633 CBS_pair_20 The CBS do 99.5 2.6E-13 5.5E-18 102.3 12.1 110 60-170 2-120 (121)
74 cd04614 CBS_pair_1 The CBS dom 99.5 2.4E-13 5.3E-18 98.5 11.5 92 126-273 2-95 (96)
75 cd04615 CBS_pair_2 The CBS dom 99.5 3.9E-13 8.4E-18 100.1 12.8 109 126-273 2-112 (113)
76 cd04588 CBS_pair_CAP-ED_DUF294 99.5 4.7E-13 1E-17 99.1 13.2 107 60-170 2-109 (110)
77 cd04800 CBS_pair_CAP-ED_DUF294 99.5 5.4E-13 1.2E-17 98.9 13.5 108 126-272 2-109 (111)
78 cd04585 CBS_pair_ACT_assoc2 Th 99.5 4E-13 8.6E-18 101.2 12.9 110 60-170 2-121 (122)
79 cd04595 CBS_pair_DHH_polyA_Pol 99.5 6.3E-13 1.4E-17 98.5 13.8 107 125-272 2-108 (110)
80 cd04599 CBS_pair_GGDEF_assoc2 99.5 3.6E-13 7.7E-18 98.8 12.3 102 126-272 2-103 (105)
81 cd04590 CBS_pair_CorC_HlyC_ass 99.5 4.9E-13 1.1E-17 99.2 13.0 107 60-170 2-110 (111)
82 cd04635 CBS_pair_22 The CBS do 99.5 2.1E-13 4.6E-18 103.0 11.2 111 60-170 2-121 (122)
83 cd04593 CBS_pair_EriC_assoc_ba 99.5 3.5E-13 7.7E-18 100.7 12.2 109 126-273 2-114 (115)
84 cd04801 CBS_pair_M50_like This 99.5 2.7E-13 5.8E-18 101.2 11.3 109 126-273 2-113 (114)
85 TIGR00393 kpsF KpsF/GutQ famil 99.5 2.5E-13 5.5E-18 117.2 12.8 112 51-164 155-268 (268)
86 cd04626 CBS_pair_13 The CBS do 99.5 5.9E-13 1.3E-17 98.8 13.0 107 126-272 2-109 (111)
87 cd04600 CBS_pair_HPP_assoc Thi 99.5 2.5E-13 5.5E-18 102.8 11.2 120 125-273 2-123 (124)
88 cd04608 CBS_pair_PALP_assoc Th 99.5 1.3E-13 2.8E-18 104.8 9.6 110 125-273 2-122 (124)
89 cd04605 CBS_pair_MET2_assoc Th 99.5 7.9E-13 1.7E-17 97.9 13.6 105 125-272 2-108 (110)
90 cd04625 CBS_pair_12 The CBS do 99.5 6.5E-13 1.4E-17 98.7 13.1 110 126-273 2-111 (112)
91 cd04623 CBS_pair_10 The CBS do 99.5 8.2E-13 1.8E-17 98.1 13.4 109 126-272 2-111 (113)
92 cd04621 CBS_pair_8 The CBS dom 99.5 5E-13 1.1E-17 103.2 12.6 132 126-273 2-134 (135)
93 cd04629 CBS_pair_16 The CBS do 99.5 6E-13 1.3E-17 99.1 12.7 111 126-273 2-113 (114)
94 cd04596 CBS_pair_DRTGG_assoc T 99.5 3.8E-13 8.1E-18 99.5 11.3 103 125-272 2-106 (108)
95 cd04586 CBS_pair_BON_assoc Thi 99.5 3.2E-13 7E-18 104.1 11.2 132 125-273 2-134 (135)
96 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 8.4E-13 1.8E-17 97.8 13.0 108 60-170 2-110 (111)
97 TIGR01137 cysta_beta cystathio 99.5 6.3E-13 1.4E-17 123.2 15.0 121 48-171 332-452 (454)
98 cd04627 CBS_pair_14 The CBS do 99.5 8.6E-13 1.9E-17 99.9 13.2 116 126-271 2-120 (123)
99 PRK07107 inosine 5-monophospha 99.5 3.5E-13 7.5E-18 124.6 13.1 117 51-172 94-219 (502)
100 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 1.1E-12 2.3E-17 120.6 16.0 154 65-276 49-203 (475)
101 PRK11573 hypothetical protein; 99.5 6.9E-13 1.5E-17 120.5 14.5 128 47-176 183-314 (413)
102 cd04624 CBS_pair_11 The CBS do 99.5 8.4E-13 1.8E-17 98.1 12.5 108 126-273 2-111 (112)
103 cd04589 CBS_pair_CAP-ED_DUF294 99.5 1.5E-12 3.2E-17 96.6 13.8 108 126-272 2-109 (111)
104 cd04591 CBS_pair_EriC_assoc_eu 99.5 9.3E-13 2E-17 97.1 12.3 99 60-170 3-104 (105)
105 cd04599 CBS_pair_GGDEF_assoc2 99.5 1.5E-12 3.3E-17 95.5 13.1 102 60-169 2-103 (105)
106 PRK07807 inosine 5-monophospha 99.5 4.2E-13 9E-18 123.4 12.3 115 116-275 88-204 (479)
107 cd04609 CBS_pair_PALP_assoc2 T 99.5 1E-12 2.2E-17 97.1 12.1 107 60-170 2-109 (110)
108 cd04620 CBS_pair_7 The CBS dom 99.5 9.1E-13 2E-17 98.4 11.9 109 126-273 2-114 (115)
109 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.3E-12 2.7E-17 96.1 12.5 101 126-272 2-104 (106)
110 cd04633 CBS_pair_20 The CBS do 99.5 1.7E-12 3.8E-17 97.7 13.5 118 126-272 2-119 (121)
111 COG2905 Predicted signal-trans 99.5 4.2E-13 9.2E-18 121.0 11.6 123 116-278 148-271 (610)
112 cd04584 CBS_pair_ACT_assoc Thi 99.5 1.6E-12 3.5E-17 97.9 13.2 111 60-170 2-120 (121)
113 COG0517 FOG: CBS domain [Gener 99.5 2E-12 4.4E-17 96.7 13.6 111 55-168 3-116 (117)
114 cd04606 CBS_pair_Mg_transporte 99.5 9.1E-13 2E-17 97.5 11.5 101 64-171 2-108 (109)
115 cd04636 CBS_pair_23 The CBS do 99.5 1E-12 2.3E-17 100.8 12.2 128 126-272 2-130 (132)
116 cd04594 CBS_pair_EriC_assoc_ar 99.5 1.6E-12 3.5E-17 95.5 12.6 100 62-170 4-103 (104)
117 cd04594 CBS_pair_EriC_assoc_ar 99.5 1.3E-12 2.9E-17 95.9 12.1 99 128-272 4-102 (104)
118 cd04610 CBS_pair_ParBc_assoc T 99.5 1.6E-12 3.4E-17 95.7 12.4 104 59-170 2-106 (107)
119 TIGR03520 GldE gliding motilit 99.5 1.2E-12 2.5E-17 119.0 14.1 132 107-282 181-317 (408)
120 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 1.8E-12 3.8E-17 95.7 12.7 104 125-272 2-107 (109)
121 cd04637 CBS_pair_24 The CBS do 99.5 1.7E-12 3.7E-17 98.0 12.8 110 60-170 2-121 (122)
122 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 2E-12 4.4E-17 95.7 12.9 107 126-272 2-109 (111)
123 cd04631 CBS_pair_18 The CBS do 99.5 1.6E-12 3.5E-17 98.5 12.5 120 126-273 2-124 (125)
124 cd04802 CBS_pair_3 The CBS dom 99.5 3.2E-12 6.9E-17 94.9 13.9 110 126-273 2-111 (112)
125 cd04639 CBS_pair_26 The CBS do 99.5 1.5E-12 3.2E-17 96.6 12.0 106 126-272 2-109 (111)
126 cd02205 CBS_pair The CBS domai 99.5 2.7E-12 5.8E-17 94.6 13.2 110 60-170 2-112 (113)
127 cd04588 CBS_pair_CAP-ED_DUF294 99.4 3.1E-12 6.8E-17 94.7 13.5 107 126-273 2-109 (110)
128 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 1.7E-12 3.6E-17 96.6 12.0 108 126-272 2-112 (114)
129 TIGR00400 mgtE Mg2+ transporte 99.4 4.6E-13 9.9E-18 123.4 10.7 138 93-277 109-253 (449)
130 PRK01862 putative voltage-gate 99.4 9.8E-13 2.1E-17 125.1 13.3 122 116-276 446-571 (574)
131 cd04587 CBS_pair_CAP-ED_DUF294 99.4 2.4E-12 5.2E-17 95.7 12.6 109 126-272 2-111 (113)
132 cd04642 CBS_pair_29 The CBS do 99.4 9.9E-13 2.2E-17 100.1 10.7 121 126-272 2-124 (126)
133 cd04602 CBS_pair_IMPDH_2 This 99.4 2E-12 4.4E-17 96.5 12.0 105 60-170 3-113 (114)
134 cd04601 CBS_pair_IMPDH This cd 99.4 1.6E-12 3.4E-17 96.2 11.2 106 59-170 2-109 (110)
135 cd04634 CBS_pair_21 The CBS do 99.4 3.3E-12 7.1E-17 99.6 13.5 110 60-170 2-142 (143)
136 cd04622 CBS_pair_9 The CBS dom 99.4 3.4E-12 7.3E-17 94.9 13.0 109 126-272 2-111 (113)
137 cd04643 CBS_pair_30 The CBS do 99.4 1.8E-12 3.9E-17 96.8 11.5 112 126-273 2-115 (116)
138 TIGR01302 IMP_dehydrog inosine 99.4 1.5E-12 3.2E-17 119.8 13.2 116 51-172 80-200 (450)
139 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 2.4E-12 5.3E-17 95.8 11.6 108 126-272 3-112 (114)
140 cd04632 CBS_pair_19 The CBS do 99.4 5.1E-12 1.1E-16 96.3 13.6 121 126-272 2-126 (128)
141 COG4109 Predicted transcriptio 99.4 1.6E-12 3.4E-17 110.9 11.6 117 51-174 188-307 (432)
142 cd04803 CBS_pair_15 The CBS do 99.4 3E-12 6.5E-17 96.6 12.1 117 126-272 2-120 (122)
143 cd04640 CBS_pair_27 The CBS do 99.4 2E-12 4.3E-17 98.5 11.1 115 126-273 2-125 (126)
144 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 4.3E-12 9.3E-17 93.9 12.6 107 126-272 2-109 (111)
145 cd04635 CBS_pair_22 The CBS do 99.4 2.4E-12 5.2E-17 97.1 11.3 118 126-273 2-121 (122)
146 cd04637 CBS_pair_24 The CBS do 99.4 5.6E-12 1.2E-16 95.1 13.2 118 126-272 2-120 (122)
147 PLN02274 inosine-5'-monophosph 99.4 3E-12 6.4E-17 118.6 13.8 114 55-174 104-223 (505)
148 cd04638 CBS_pair_25 The CBS do 99.4 7.4E-12 1.6E-16 92.1 13.4 104 60-170 2-105 (106)
149 cd04610 CBS_pair_ParBc_assoc T 99.4 3.7E-12 8E-17 93.7 11.7 104 125-273 2-106 (107)
150 cd04585 CBS_pair_ACT_assoc2 Th 99.4 3.2E-12 7E-17 96.1 11.6 119 126-273 2-121 (122)
151 PRK07107 inosine 5-monophospha 99.4 2.2E-12 4.8E-17 119.2 12.1 108 126-274 106-218 (502)
152 cd04590 CBS_pair_CorC_HlyC_ass 99.4 7.5E-12 1.6E-16 92.8 12.8 105 126-272 2-109 (111)
153 PTZ00314 inosine-5'-monophosph 99.4 3.2E-12 6.9E-17 118.4 12.9 114 53-172 98-217 (495)
154 PRK05567 inosine 5'-monophosph 99.4 6.2E-12 1.3E-16 116.9 14.0 132 117-292 87-224 (486)
155 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.1E-11 2.5E-16 93.2 13.0 118 126-273 2-120 (121)
156 COG0517 FOG: CBS domain [Gener 99.4 1.4E-11 3.1E-16 92.0 13.4 110 123-272 5-117 (117)
157 COG1253 TlyC Hemolysins and re 99.4 6.2E-12 1.3E-16 115.2 13.6 129 47-179 202-334 (429)
158 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.5E-16 92.4 12.4 103 126-272 3-112 (114)
159 TIGR01302 IMP_dehydrog inosine 99.4 7.6E-12 1.6E-16 115.1 13.3 115 118-275 81-200 (450)
160 cd04601 CBS_pair_IMPDH This cd 99.4 8.9E-12 1.9E-16 92.1 11.3 105 125-273 2-109 (110)
161 cd04606 CBS_pair_Mg_transporte 99.4 3.7E-12 8E-17 94.2 9.1 99 130-273 2-107 (109)
162 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.7E-11 3.8E-16 90.4 12.6 106 126-272 2-108 (110)
163 cd04598 CBS_pair_GGDEF_assoc T 99.4 1.1E-11 2.4E-16 93.0 11.6 110 60-170 2-118 (119)
164 PTZ00314 inosine-5'-monophosph 99.4 9.4E-12 2E-16 115.3 13.2 117 118-276 97-218 (495)
165 PLN02274 inosine-5'-monophosph 99.4 1.4E-11 3E-16 114.2 14.2 114 123-278 106-224 (505)
166 TIGR00393 kpsF KpsF/GutQ famil 99.3 7.5E-12 1.6E-16 108.0 11.2 111 117-267 155-268 (268)
167 cd04634 CBS_pair_21 The CBS do 99.3 3E-11 6.5E-16 94.1 13.5 139 126-272 2-141 (143)
168 cd04638 CBS_pair_25 The CBS do 99.3 2.5E-11 5.5E-16 89.2 12.3 102 126-272 2-104 (106)
169 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.4E-11 5.2E-16 89.5 12.0 96 127-272 4-103 (105)
170 KOG1764 5'-AMP-activated prote 99.3 4.7E-11 1E-15 107.0 15.9 196 60-286 77-296 (381)
171 TIGR01137 cysta_beta cystathio 99.3 2.6E-11 5.6E-16 112.4 13.7 120 114-274 332-452 (454)
172 cd02205 CBS_pair The CBS domai 99.3 5.3E-11 1.1E-15 87.6 12.7 108 126-272 2-111 (113)
173 COG4535 CorC Putative Mg2+ and 99.3 5.7E-12 1.2E-16 101.9 7.8 131 47-181 63-197 (293)
174 cd04592 CBS_pair_EriC_assoc_eu 99.3 2.9E-11 6.3E-16 93.0 11.4 96 60-155 2-116 (133)
175 cd04598 CBS_pair_GGDEF_assoc T 99.3 1.1E-10 2.3E-15 87.6 13.1 112 126-273 2-118 (119)
176 COG4536 CorB Putative Mg2+ and 99.3 3.9E-11 8.5E-16 103.5 10.9 129 47-177 196-328 (423)
177 PF00571 CBS: CBS domain CBS d 99.2 4E-11 8.6E-16 77.9 7.3 55 53-107 1-55 (57)
178 COG2239 MgtE Mg/Co/Ni transpor 99.2 1.4E-10 3E-15 105.3 12.8 122 47-175 128-255 (451)
179 PRK11573 hypothetical protein; 99.2 1.5E-10 3.3E-15 105.3 13.0 134 109-282 179-317 (413)
180 COG1253 TlyC Hemolysins and re 99.2 3.3E-10 7.2E-15 103.9 14.2 145 95-283 186-335 (429)
181 COG2239 MgtE Mg/Co/Ni transpor 99.2 1.4E-10 3E-15 105.2 11.0 127 107-279 122-255 (451)
182 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.9E-09 4.1E-14 82.9 11.2 114 126-258 2-116 (133)
183 PF00571 CBS: CBS domain CBS d 99.0 9.9E-10 2.2E-14 71.3 7.0 54 220-275 1-55 (57)
184 PRK10070 glycine betaine trans 99.0 7.1E-08 1.5E-12 87.4 18.5 121 117-282 274-399 (400)
185 KOG0474 Cl- channel CLC-7 and 98.9 3.2E-09 6.9E-14 97.1 7.2 164 116-282 581-752 (762)
186 TIGR01186 proV glycine betaine 98.9 2.3E-07 5E-12 83.0 18.0 148 83-276 198-358 (363)
187 KOG2550 IMP dehydrogenase/GMP 98.8 8.2E-09 1.8E-13 90.1 7.2 106 60-171 117-226 (503)
188 COG4536 CorB Putative Mg2+ and 98.8 4.9E-08 1.1E-12 84.7 10.0 138 113-290 196-338 (423)
189 TIGR01186 proV glycine betaine 98.7 3.7E-07 8.1E-12 81.7 14.0 110 58-174 249-359 (363)
190 KOG0474 Cl- channel CLC-7 and 98.7 3E-08 6.5E-13 90.9 6.5 125 47-172 578-746 (762)
191 PRK10070 glycine betaine trans 98.7 4.4E-07 9.6E-12 82.3 13.5 117 51-174 274-394 (400)
192 KOG2550 IMP dehydrogenase/GMP 98.5 2.4E-07 5.2E-12 81.1 7.2 105 125-273 116-225 (503)
193 COG4535 CorC Putative Mg2+ and 98.5 7.7E-08 1.7E-12 78.3 3.4 173 47-281 17-194 (293)
194 cd04597 CBS_pair_DRTGG_assoc2 98.5 3.9E-07 8.5E-12 67.9 6.5 54 51-104 58-111 (113)
195 PRK14869 putative manganese-de 98.5 1.9E-07 4.1E-12 88.6 5.8 198 53-272 175-389 (546)
196 COG4175 ProV ABC-type proline/ 98.2 9.7E-06 2.1E-10 69.6 9.7 158 58-277 215-384 (386)
197 cd04597 CBS_pair_DRTGG_assoc2 98.2 2.3E-06 5E-11 63.7 5.2 53 218-272 58-111 (113)
198 smart00116 CBS Domain in cysta 98.0 1.9E-05 4.1E-10 48.1 6.0 45 61-105 2-46 (49)
199 KOG0475 Cl- channel CLC-3 and 98.0 8.2E-05 1.8E-09 69.0 11.9 111 61-171 558-693 (696)
200 TIGR03415 ABC_choXWV_ATP choli 98.0 0.00018 3.9E-09 65.0 14.0 47 229-276 334-380 (382)
201 smart00116 CBS Domain in cysta 97.9 3.5E-05 7.5E-10 46.9 5.9 44 230-273 2-46 (49)
202 KOG0475 Cl- channel CLC-3 and 97.6 0.00027 5.8E-09 65.7 8.5 131 127-273 558-692 (696)
203 TIGR03415 ABC_choXWV_ATP choli 97.1 0.0034 7.4E-08 56.8 9.3 110 48-173 271-380 (382)
204 KOG0476 Cl- channel CLC-2 and 96.7 0.0094 2E-07 56.9 9.1 58 47-104 584-643 (931)
205 KOG0476 Cl- channel CLC-2 and 96.7 0.015 3.3E-07 55.6 10.2 59 116-174 587-648 (931)
206 COG4175 ProV ABC-type proline/ 96.5 0.0062 1.4E-07 52.7 5.7 109 49-173 272-383 (386)
207 COG1125 OpuBA ABC-type proline 95.9 0.091 2E-06 44.4 9.5 104 60-171 188-308 (309)
208 KOG2118 Predicted membrane pro 94.2 0.074 1.6E-06 49.8 5.0 124 47-173 200-328 (498)
209 COG1125 OpuBA ABC-type proline 93.0 0.22 4.8E-06 42.2 5.3 58 48-105 246-307 (309)
210 KOG2118 Predicted membrane pro 87.3 0.41 9E-06 44.9 2.4 123 114-276 201-328 (498)
211 PF05198 IF3_N: Translation in 78.9 6.5 0.00014 26.7 5.0 41 252-292 13-60 (76)
212 PRK11388 DNA-binding transcrip 73.9 25 0.00055 34.3 9.6 109 52-164 42-162 (638)
213 PF05198 IF3_N: Translation in 60.1 29 0.00062 23.6 4.9 30 82-111 12-41 (76)
214 COG0290 InfC Translation initi 53.6 28 0.00061 27.6 4.4 41 251-291 18-65 (176)
215 COG3290 CitA Signal transducti 52.7 1.3E+02 0.0027 28.7 9.2 84 68-165 73-158 (537)
216 CHL00199 infC translation init 50.2 25 0.00054 28.3 3.8 40 252-291 25-71 (182)
217 PRK00028 infC translation init 48.0 27 0.00059 28.0 3.7 40 252-291 20-66 (177)
218 PRK11388 DNA-binding transcrip 47.2 76 0.0017 31.0 7.5 99 136-267 61-162 (638)
219 TIGR03278 methan_mark_10 putat 45.8 1.5E+02 0.0032 27.4 8.5 81 82-177 306-393 (404)
220 COG2216 KdpB High-affinity K+ 40.6 46 0.001 31.5 4.4 43 236-278 412-454 (681)
221 CHL00199 infC translation init 37.8 64 0.0014 26.0 4.3 35 69-103 41-76 (182)
222 PF14827 Cache_3: Sensory doma 35.9 41 0.00089 24.6 2.9 18 83-100 92-109 (116)
223 PF12282 H_kinase_N: Signal tr 33.6 40 0.00086 26.0 2.5 19 251-269 106-124 (145)
224 PRK13599 putative peroxiredoxi 32.9 2.2E+02 0.0049 23.5 7.1 81 64-144 97-195 (215)
225 COG0290 InfC Translation initi 32.5 1.4E+02 0.003 23.8 5.3 25 81-105 17-41 (176)
226 TIGR00168 infC translation ini 32.1 78 0.0017 25.1 4.0 35 69-103 24-59 (165)
227 PRK00028 infC translation init 31.9 88 0.0019 25.1 4.3 36 68-103 35-71 (177)
228 cd02958 UAS UAS family; UAS is 30.7 92 0.002 22.4 4.1 61 47-107 39-107 (114)
229 PF14044 NETI: NETI protein 29.0 87 0.0019 19.9 3.0 24 232-257 3-26 (57)
230 COG2216 KdpB High-affinity K+ 26.2 1.8E+02 0.004 27.7 5.8 40 135-174 414-453 (681)
231 PF02743 Cache_1: Cache domain 25.3 86 0.0019 20.9 2.9 17 84-100 18-34 (81)
232 smart00481 POLIIIAc DNA polyme 24.8 1.3E+02 0.0028 19.2 3.6 39 234-272 12-50 (67)
233 smart00594 UAS UAS domain. 24.6 1E+02 0.0022 22.7 3.3 59 47-105 49-119 (122)
234 PF07636 PSRT: PSRT; InterPro 23.9 73 0.0016 17.2 1.7 17 5-21 11-27 (32)
235 PF13365 Trypsin_2: Trypsin-li 23.8 59 0.0013 23.2 2.0 18 80-97 103-120 (120)
236 PF03948 Ribosomal_L9_C: Ribos 23.2 2.6E+02 0.0057 19.3 5.2 23 259-281 25-48 (87)
237 PF04459 DUF512: Protein of un 21.8 1.5E+02 0.0033 24.4 4.1 40 251-291 127-171 (204)
238 COG1956 GAF domain-containing 21.2 1.2E+02 0.0025 23.9 3.1 17 150-166 118-134 (163)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.82 E-value=1.6e-19 Score=146.98 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=112.0
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
-.+.+|+++|+++++++.+++|+.||.++|.++++++.||+|++ +++|++|.+|+. ..+.++ .. ..+|+++|.+++
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~-~aia~g-~~-~~kV~~~M~k~v 244 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIA-KAIANG-NL-DAKVSDYMRKNV 244 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHH-HHHHcC-Cc-cccHHHHhccCC
Confidence 45778999999999999999999999999999999999999965 999999999996 455555 33 679999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
+++.+++.+.+|+++|..+++.++.|+| +|+++|++|+.|++..+.
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999999 999999999999998654
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.79 E-value=9.4e-19 Score=142.51 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=112.1
Q ss_pred CCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
.....+++++|.++++++.+++++.++..+|.+++++..||+|+++++|++|..|+.+++..
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~------------------ 229 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN------------------ 229 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc------------------
Confidence 45577999999999999999999999999999999999999997799999999999765433
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
-.+...++++|.+ ++++++.|+.+.+|+++|..+++.++.|+| +|+++|+||++||
T Consensus 230 ---------------------g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDI 286 (294)
T COG2524 230 ---------------------GNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDI 286 (294)
T ss_pred ---------------------CCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHH
Confidence 1345679999987 999999999999999999999999999999 9999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
|+++..
T Consensus 287 L~~ia~ 292 (294)
T COG2524 287 LTRIAG 292 (294)
T ss_pred HHHhhc
Confidence 977654
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.77 E-value=3.6e-18 Score=141.62 Aligned_cols=130 Identities=22% Similarity=0.323 Sum_probs=115.0
Q ss_pred CCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH----HHcCCCCccccccc
Q 041090 46 GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV----IAEGLRPDQTVVSK 121 (294)
Q Consensus 46 ~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~----~~~~~~~~~~~v~~ 121 (294)
|....++..|+|+++++++..++++.+|.++|.+++++.+||+|++.+++|+++.+|++... ++.-......+++.
T Consensus 240 R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~ 319 (382)
T COG3448 240 RRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKG 319 (382)
T ss_pred HHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccc
Confidence 34566789999999999999999999999999999999999999999999999999997521 11112344678999
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
+|+.+..++.++++..+++-.+...+.|++||+| +|+++||||+.|++..+.++
T Consensus 320 imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 320 IMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999887764
No 4
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.75 E-value=1.4e-17 Score=126.02 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=109.2
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
..++++.+|..+++++.+++++.+|+++|.+++++.+||+++ ++++|-+|..+|.+..+....+....++.++|..+++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP 141 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP 141 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence 568899999999999999999999999999999999999996 8999999999998777666677778899999999999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~ 172 (294)
++++++++..+.+++..+. .+.|+++|+++|+||..|+++..
T Consensus 142 ~Vs~~~~l~vI~~LL~~~~--AVlV~e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 142 TVSPDESLNVISQLLEEHP--AVLVVENGKVVGIITKADIMKLL 183 (187)
T ss_pred cCCCCCCHHHHHHHHhhCC--eEEEEeCCceEEEEeHHHHHHHH
Confidence 9999999999988887544 67788899999999999998754
No 5
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=3.5e-17 Score=135.79 Aligned_cols=132 Identities=20% Similarity=0.346 Sum_probs=112.4
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+.++.++|++++++++.++++.++.+.+.++++..+||+| +.+++|+|++.|+++....
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~------------------ 303 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP------------------ 303 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc------------------
Confidence 346789999999999999999999999999999999999999 8899999999999864322
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
..++.++ .+....++.+|+. ++.++.++++..+.+-.+.+.+.|++||+| +|+++||||+.|+
T Consensus 304 -------------~p~qrlr-~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl 367 (382)
T COG3448 304 -------------SPFQRLR-FLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL 367 (382)
T ss_pred -------------chHHHhh-ccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence 1122222 3445779999977 999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHccC
Q 041090 272 LMRVVAQNL 280 (294)
Q Consensus 272 l~~~~~~~~ 280 (294)
+.. ++++.
T Consensus 368 iaa-l~r~~ 375 (382)
T COG3448 368 IAA-LYRNW 375 (382)
T ss_pred HHH-HHHHH
Confidence 944 44433
No 6
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.70 E-value=3.6e-16 Score=147.71 Aligned_cols=211 Identities=19% Similarity=0.258 Sum_probs=140.9
Q ss_pred ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC----Cccccccccc--
Q 041090 50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR----PDQTVVSKIM-- 123 (294)
Q Consensus 50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~----~~~~~v~~~~-- 123 (294)
..+|+|+|.++++++++++++.+|+++|.+++++.+||+|++|+++|+++..|+.+.++..... ....++.++.
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~ 146 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT 146 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999998655543210 0011111111
Q ss_pred -ccCCeEEcCC------------CcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHH--hhchhHHH
Q 041090 124 -TRNPIFVTSD------------SLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAA--EQGSAIAA 188 (294)
Q Consensus 124 -~~~~~~v~~~------------~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~--~~~~~~~~ 188 (294)
...++.-..+ +....+++.+. .|.++=+.++.|++..++....... +.+...+.
T Consensus 147 L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~-----------~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~ 215 (546)
T PRK14869 147 LDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIE-----------EGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSE 215 (546)
T ss_pred cCcEEEecCcccccccccEEEEEcCHHHHHHhcc-----------CCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCH
Confidence 1111111000 00111111111 1112222344444443333221111 22333333
Q ss_pred HHHHHHHhhCCC-CCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090 189 AVEGVERQWGSN-FSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI 265 (294)
Q Consensus 189 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi 265 (294)
.+..+++..|+. +..+.+.+.+........++.++|. + ++.++++++++.++.+.|.+.+++.+||+| +|+++|+
T Consensus 216 ~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGi 293 (546)
T PRK14869 216 DVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGV 293 (546)
T ss_pred HHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEE
Confidence 333444455544 5566678888888888999999997 6 899999999999999999999999999999 8999999
Q ss_pred eehhHHHH
Q 041090 266 LTSKDVLM 273 (294)
Q Consensus 266 vt~~Dil~ 273 (294)
||++|+++
T Consensus 294 it~~dl~~ 301 (546)
T PRK14869 294 ISRYHLLS 301 (546)
T ss_pred EEHHHhhc
Confidence 99999994
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.70 E-value=2.3e-16 Score=119.38 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=105.3
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (294)
..++..+|..+.+.+.+++++.+++++|.+++++.+||+++++++|-||..++.+...+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~------------------- 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM------------------- 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc-------------------
Confidence 6688999999999999999999999999999999999999999999999999988766532
Q ss_pred hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090 196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV 275 (294)
Q Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~ 275 (294)
+..+...++++|.. ..++|++++++..+-+++..+ .++.|+++|+++||||+.||++.+
T Consensus 125 -----------------e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 125 -----------------ESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLL 183 (187)
T ss_pred -----------------cchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHH
Confidence 22345679999988 999999999999999988765 468888999999999999999543
No 8
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.70 E-value=3.9e-16 Score=138.42 Aligned_cols=122 Identities=21% Similarity=0.324 Sum_probs=109.2
Q ss_pred cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
..++|+|+|.+ +++++++++|+.+|++.|.+++.+.+||+|++|+++|++|.+|+. .....+......++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 66789999997 899999999999999999999988889999899999999999996 455444344456899999999
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~ 171 (294)
++++.+++++.++++.|.+++++++||+++++++|+++..|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 999999999999999999999999999998899999999999864
No 9
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.2e-15 Score=112.62 Aligned_cols=111 Identities=32% Similarity=0.422 Sum_probs=98.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
++.++.+++++.+|++.|.+++.+.+||+|++ ++++|+++.+|+++.+..........++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 56789999999999999999999999999987 89999999999986565544344456788999888899999999999
Q ss_pred HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVENNELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence 99999999999999998899999999999874
No 10
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=2.2e-15 Score=112.74 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=96.4
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHH
Q 041090 61 ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEAL 140 (294)
Q Consensus 61 ~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 140 (294)
+.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+++............++.++|..+++.+.+++++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 82 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW 82 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence 56789999999999999999999999999999999999999997544332223335678999988999999999999999
Q ss_pred HHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 141 QKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 141 ~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+.|.+++.+.+||++ +|+++|+++..|+++
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999 789999999999864
No 11
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.65 E-value=3e-15 Score=137.79 Aligned_cols=170 Identities=13% Similarity=0.177 Sum_probs=133.8
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMAS-----RRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~-----~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 121 (294)
.+.+.+++++|++++++++++.|+.+|++.|.+ .+...++|+|++++++|+++.+|++. . ..+.++++
T Consensus 127 ~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~-----a--~~~~~v~~ 199 (449)
T TIGR00400 127 SYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL-----A--KPEEILSS 199 (449)
T ss_pred CCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc-----C--CCCCcHHH
Confidence 567788999999999999999999999999975 45678999998999999999999863 1 12457999
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSN 200 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 200 (294)
+|.++++++.+++++.++++.|.+++...+||+| +|+++|+||..|+++...+..
T Consensus 200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~------------------------ 255 (449)
T TIGR00400 200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA------------------------ 255 (449)
T ss_pred HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh------------------------
Confidence 9998888999999999999999999999999999 899999999999997655421
Q ss_pred CCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 201 FSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.+++|.. ...+..+++.+..+...|.++++.+++|. .+.|+++ ..++
T Consensus 256 -------------------~ed~~~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii 302 (449)
T TIGR00400 256 -------------------TEDFYMI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATII 302 (449)
T ss_pred -------------------HHHHHHh--cCCCCCcchhhhchHHHHHHhccchHHHH---HHHHHHH-HHHH
Confidence 1344432 33333345667777777777777777665 2445555 5554
No 12
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=3e-15 Score=132.47 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=107.5
Q ss_pred ccchhccccCC--ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 50 ERTVKKLRLSK--ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 50 ~~~v~dl~~~~--~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
..+|+++|.++ ++++++++++.+|.+.|.+++...+||+|++|+++|+++..|+.+.+ ..+... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~-~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL-VGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH-hCCCCc-CCcHHHhcCCCC
Confidence 78999999998 99999999999999999999999999999999999999999996433 333222 456899999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+++.+++++.++++.|.+++...+||++ +|+++|+++..|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999 7899999999999864
No 13
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=5.6e-15 Score=111.53 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=90.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccc------cccccCCeEEcCC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVS------KIMTRNPIFVTSD 133 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~ 133 (294)
++.++++++++.+|++.|.+++.+.+||++++|+++|+++.+|++.....+........+. +.|..++.++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 5788999999999999999999999999999999999999999975432221111111222 2333456789999
Q ss_pred CcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 134 SLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.++++.|.+++.+.+||++ +|+++|++|+.|+++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999 689999999999874
No 14
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=2.9e-15 Score=109.12 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=83.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+++++++++++.+|.+.|.+++++.+||+|++ |+++|++|..|+.+.+. +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHH
Confidence 46789999999999999999999999999974 89999999999964221 678999999999
Q ss_pred HHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~ 170 (294)
+++.|.+++++++||++ + |+++|+++..|+++
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999999999 6 89999999999874
No 15
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=9e-15 Score=108.78 Aligned_cols=111 Identities=36% Similarity=0.569 Sum_probs=96.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++.++.++.++.+.|.++++..+||+|++++++|+++..|+++.+..........++.++|..++..+++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 56788999999999999999999999999988999999999999765544333333457899998888999999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 82 l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDGGKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence 9999999999999998889999999999864
No 16
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.64 E-value=2e-15 Score=135.78 Aligned_cols=124 Identities=32% Similarity=0.454 Sum_probs=116.7
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.-..+|+++++.+++++++.+|+.+|...|.+.|.+++.++++++...||+|.+|+...++.++.+. ..+|+++|+.++
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~ 224 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence 3446789999999999999999999999999999999999999999999999999998999888877 789999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~ 172 (294)
+++..++-+.+|+-+|.+++++++||+++|+++|++|..|++...
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLF 269 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhh
Confidence 999999999999999999999999999999999999999999754
No 17
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.64 E-value=1.8e-14 Score=132.24 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=107.4
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.+..++.++|..+++++.+++++.+|+++|.+++++.+||+|++++++|++|.+|+. .. .. ..++.++|..++
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-----~~-~~~V~diMt~~~ 158 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-----DR-FTQVRDVMSTDL 158 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-----cc-CCCHHHhccCCc
Confidence 456778999999999999999999999999999999999999999999999999994 11 22 357999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
+++++++++.++++.|.+++++.+||+| +++++|+||..|+++...
T Consensus 159 itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 159 VTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred eEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 9999999999999999999999999999 899999999999987543
No 18
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=8.7e-15 Score=108.98 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++++++++.+|.+.|.+++.+.+||+|++|+++|+++..|+.+ .. .......++.++|..++..+.+++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh-hc--cccccccChhheeecCCcEECCCCcHHHH
Confidence 4577899999999999999999999999998999999999999964 21 11222356889998888899999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 9999999999999999 799999999999874
No 19
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=1.5e-14 Score=108.87 Aligned_cols=110 Identities=30% Similarity=0.372 Sum_probs=94.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAI 137 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 137 (294)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..|+++.... .......++.++|.. .+.++.+++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIG-GADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHc-CCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 56789999999999999999999999999988999999999999765442 333335568888864 678999999999
Q ss_pred HHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHH
Q 041090 138 EALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLY 170 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~ 170 (294)
++++.|.+++.+.+||++ + ++++|++|..++++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999 5 69999999998863
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.60 E-value=2.8e-14 Score=106.75 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=95.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+.+++++.+|.+.|.+.+.+.+||+|++|+++|+++.+|+++... +.......++.++|...+.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccCCceEECCCCCHHHH
Confidence 5678899999999999999999999999999899999999999975443 333333445888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-N--GEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~ 170 (294)
++.|.+++...+||++ + |+++|+++..|+++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 9999999999999998 5 79999999999874
No 21
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.60 E-value=9.2e-15 Score=111.22 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+++.++.+++++.+|++.|.+++++.+||+|++|+++|+++..|+++.+..+.... ..++.++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~-~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP-SDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC-CCcHHHHhhccceecCCCCCHHH
Confidence 46788999999999999999999999999998899999999999986555443333 57899999999999999999999
Q ss_pred HHHHHH---------hCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 139 ALQKMV---------QGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 139 ~~~~~~---------~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+.+++. ..+.+.+||++ +|+++|++|..|++.+
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 998653 23456777888 7999999999999864
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=2.2e-14 Score=108.72 Aligned_cols=112 Identities=24% Similarity=0.408 Sum_probs=96.6
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------CCcccccccccccCCeE
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------RPDQTVVSKIMTRNPIF 129 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~ 129 (294)
++++++.+++++.++.+.|.+++++.+||++++|+++|+++..|++..+..... .....++.++|...+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence 477889999999999999999999999999988999999999999754332211 02344788999888999
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+.+++++.++++.|.+.+.+.+||++ +|+++|+++..|++.
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 99999999999999999999999999 899999999999874
No 23
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=3.6e-14 Score=109.61 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=95.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCC----------------------ccc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRP----------------------DQT 117 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~----------------------~~~ 117 (294)
++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+++......... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4577899999999999999999999999999999999999999976543221110 134
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.++|..++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..++++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 78899988888999999999999999999999999999899999999999874
No 24
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.59 E-value=2.3e-14 Score=124.38 Aligned_cols=126 Identities=11% Similarity=0.224 Sum_probs=108.4
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
++.+.+|+++|++ +++++++++++.++++.+.+++++.+||++++ ++++|+++.+|++... ..+.. ...+.++|
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~-~~~~~--~~~l~~l~ 139 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM-RSDAE--AFSMDKVL 139 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh-hccCC--cCCHHHHc
Confidence 5788899999999 79999999999999999999999999999876 7899999999997433 22111 23578888
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM 176 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~ 176 (294)
. +++++++++++.++++.|.+++.+.++|+| .|.++|+||..|+++.+...+
T Consensus 140 r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 140 R-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred C-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 5 455899999999999999999999999999 789999999999999877643
No 25
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.58 E-value=2.1e-14 Score=130.38 Aligned_cols=122 Identities=12% Similarity=0.207 Sum_probs=107.2
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
+..+.+|+|+|++ ++++++.++++.++++.+.+++++.+||++++ ++++|+++.+|++.+. .+ ...++.+++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~-~~----~~~~l~~~~ 261 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL-NK----KNFDWQSLL 261 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh-cc----CCCCHHHHc
Confidence 5678899999998 89999999999999999999999999999864 6899999999997532 21 134577887
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
. ++.++++++++.++++.|.+++.|.++|+| .|.++|+||.+|+++.+..
T Consensus 262 ~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 R-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred C-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence 5 678999999999999999999999999999 7999999999999987765
No 26
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.1e-14 Score=106.15 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=96.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC-CCcccccccccccCCeEEcCCCcHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL-RPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
++.++.+++++.+|++.|.+++.+.+||++++++++|+++..|+++.+..... .....++.++|..++..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 56788999999999999999899999999999999999999999765543221 12356788999888889999999999
Q ss_pred HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||+++|+++|+++..++++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 99999999999999999889999999999874
No 27
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.58 E-value=5.2e-14 Score=130.65 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=102.8
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-cCCeEE
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-RNPIFV 130 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v 130 (294)
.++++|.++++++++++++.+|+++|.+++++.+||+|++++++|+++.+|+.. . .. ...++.++|. .+++++
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~----~~-~~~~V~dim~~~~~v~v 161 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-E----TD-LSQPVSEVMTKERLVTV 161 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-c----cc-CCCcHHHHcCCCCCEEE
Confidence 577899999999999999999999999999999999999999999999999952 1 12 2457899998 688899
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
++++++.++++.|.+++++.+||+| +|+++|++|..|+++.
T Consensus 162 ~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~ 203 (486)
T PRK05567 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKA 203 (486)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence 9999999999999999999999999 8999999999999875
No 28
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=8.2e-14 Score=103.56 Aligned_cols=110 Identities=23% Similarity=0.395 Sum_probs=93.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
.+.++.+++++.+|++.|.+++...++|.+ +|+++|+++.+|+++.+...+......++.++|...+.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 467889999999999999888887787776 5999999999999765543322323457899998888899999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+++...+||+++|+++|++|..|++.
T Consensus 81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 81 RRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 9999999999999999899999999999874
No 29
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=4.2e-14 Score=105.80 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=91.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC-C---cccccccccccCCeEEcCCCc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR-P---DQTVVSKIMTRNPIFVTSDSL 135 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~-~---~~~~v~~~~~~~~~~v~~~~~ 135 (294)
+++++++++++.+|++.|.+++++.+||+|++|+++|+++..|+++.+...... . ...++.++|..++.++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 567899999999999999999999999999889999999999997544321111 1 135788999888999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 136 AIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 136 l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+.++++.|.+.+ .+||++ +|+++|++|..|+++
T Consensus 82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 82 IEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred HHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 999999998754 589998 799999999999875
No 30
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.58 E-value=3.3e-14 Score=135.11 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
..+.++|+|+|.+++..+++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+..+. .....++.++|.++
T Consensus 443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~~~ 521 (574)
T PRK01862 443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAHTP 521 (574)
T ss_pred HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhccCC
Confidence 46788999999999999999999999999999999999999999999999999999975443322 22245789999988
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-N--GEVIAILDITKCLYDAI 173 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~~~~ 173 (294)
+.++++++++.++++.|.+++.+.+||+| + ++++|++|+.|+++.+.
T Consensus 522 ~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 522 FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 99999999999999999999999999998 4 48999999999988654
No 31
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.57 E-value=6.2e-14 Score=125.35 Aligned_cols=190 Identities=21% Similarity=0.215 Sum_probs=143.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCc-----ccccccccc---cCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPD-----QTVVSKIMT---RNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~-----~~~v~~~~~---~~~~~v 130 (294)
+.+++.+..++.+++..+.++++..+||.| +.+.+.+++|.+-+++++........ ..++.++-. ..+..+
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i 242 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI 242 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence 448999999999999999999999999999 56899999999999977765544331 122222211 257788
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE 209 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 209 (294)
..++++.+|++.|...+++.+||++ .|+.+|+++..|+...+...... ..+..-
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~----------------------~~~~~~--- 297 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYN----------------------NLDLSC--- 297 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccC----------------------ccchhH---
Confidence 9999999999999999999999999 78889999999987654431110 000000
Q ss_pred HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccC
Q 041090 210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNL 280 (294)
Q Consensus 210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~ 280 (294)
+.+ .......+...+++|.++.++.++++.|..+++|+++||| +|+++|+||..|++..+...-.
T Consensus 298 -l~~-----~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 298 -LSE-----ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred -HHH-----HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence 000 0111111133689999999999999999999999999999 6999999999999966665533
No 32
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3.2e-14 Score=105.86 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++++++++.++++.|.+.+.+.++|++ +++++|+++..|+.+....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~------------------------------ 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN------------------------------ 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc------------------------------
Confidence 356789999999999999988888999999 7899999999998652100
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....++.++|.. ++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||.+|++
T Consensus 52 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 52 ---------DYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred ---------cccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 0112357788866 789999999999999999999999999999 69999999999998
No 33
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=8.3e-14 Score=103.84 Aligned_cols=108 Identities=33% Similarity=0.519 Sum_probs=94.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++++++++.+|++.|.+.+.+.++|++++|+++|+++.+|+++.+. +.... ..++.+++...+.++.+++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL-KGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh-cCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 4567899999999999999999999999998999999999999975443 33333 456889998888899999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCL 169 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll 169 (294)
++.|.+.+.+.+||++ +|+++|+++..|++
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 9999999999999998 88999999999986
No 34
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.57 E-value=5.7e-14 Score=104.55 Aligned_cols=110 Identities=49% Similarity=0.769 Sum_probs=95.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+.+++++.++++.|.+++.+.+||+++ ++++|+++..|++..+...+......++.++|..++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~ 80 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA 80 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence 5678899999999999999989999999997 999999999999766655443332357889998888899999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+++.+.+||++ +++++|+++..|++.
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999999 699999999999864
No 35
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.57 E-value=3e-14 Score=126.34 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=101.8
Q ss_pred ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090 115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE 191 (294)
Q Consensus 115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 191 (294)
...+++++|.+ +++++++++++.++++.|.+.+...++|++ +|+++|++|..|+.+....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~----------------- 262 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM----------------- 262 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence 34568999986 889999999999999999888888888888 8999999999998642111
Q ss_pred HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHH
Q 041090 192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDV 271 (294)
Q Consensus 192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Di 271 (294)
+ ......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+++|+++|+||++|+
T Consensus 263 ------~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 263 ------G--------------IDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ------C--------------CCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 0 00112468899977 8999999999999999999999999999999999999999999
Q ss_pred HHH
Q 041090 272 LMR 274 (294)
Q Consensus 272 l~~ 274 (294)
++.
T Consensus 321 l~~ 323 (326)
T PRK10892 321 LRA 323 (326)
T ss_pred Hhc
Confidence 843
No 36
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=9.3e-14 Score=103.39 Aligned_cols=110 Identities=35% Similarity=0.525 Sum_probs=95.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
+++++.+++++.+|.+.|.+++.+.+||+++ |+++|+++..|++...+..+......++.++|...+.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence 5678999999999999999999999999997 999999999998644444444443345899998888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|...+.+++||++ +|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998 699999999999864
No 37
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=5.8e-14 Score=106.06 Aligned_cols=111 Identities=24% Similarity=0.389 Sum_probs=95.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC--------CcccccccccccCCeEEc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR--------PDQTVVSKIMTRNPIFVT 131 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~--------~~~~~v~~~~~~~~~~v~ 131 (294)
++.++.+++++.+|++.|.+.+++.+||++++|+++|+++..|+++.+...... ....++.+++..++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 567899999999999999999999999999889999999999997544321111 135578889988899999
Q ss_pred CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++++.++++.|.+.+.+.+||++ +|+++|+++..|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999 689999999999874
No 38
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=8.4e-14 Score=103.70 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=95.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+.+++++.+|++.|.+.+.+.+||+|++++++|+++..|+.+.... +......++.++|..++.++..++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35678999999999999999999999999988999999999999754443 22233567889998888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|...+.+.+||++ +|+++|+++..++++
T Consensus 81 ~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999 789999999999864
No 39
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.3e-14 Score=102.48 Aligned_cols=93 Identities=27% Similarity=0.388 Sum_probs=84.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
+++++.+++++.+|++.|.+++++.+||+|++|+++|+++..|+++.. .+.++.+++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------CcEEecCCCCHHHH
Confidence 567899999999999999999999999999899999999999996311 16788999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+++.+.+||++ +|+++|+++..|+++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999999 689999999999874
No 40
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=5.8e-14 Score=102.24 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=81.7
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
.++++++++++.++.+.|.+.+++.+||++ + |+++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 356789999999999999999999999998 5 7999999999986410
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C-CeEeEeeehhHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G-SKIQGILTSKDVL 272 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~vGivt~~Dil 272 (294)
.+.++.+++++.+|+++|.+++++++||++ + |+++|+||.+|++
T Consensus 51 -------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 51 -------------------------RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred -------------------------eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 177899999999999999999999999999 5 8999999999997
No 41
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.56 E-value=1.3e-13 Score=102.34 Aligned_cols=109 Identities=39% Similarity=0.647 Sum_probs=95.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.+++++.++.+|.+.|.+++.+.+||+|+ ++++|+++..|+++.+...+... ..++.+++..+++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~-~~~i~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDP-DTPVSEVMTAPPITIPPDATVFEA 79 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCc-cCCHHHHhCCCCeEECCCCcHHHH
Confidence 5678999999999999999988999999997 99999999999975554433222 457889998899999999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 80 LLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 9999999999999999889999999999864
No 42
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.56 E-value=1e-13 Score=103.21 Aligned_cols=110 Identities=29% Similarity=0.433 Sum_probs=95.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++.+++++.+|.+.|.+.+++.+||+|++|+++|+++..|+++. ..+.......++.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI-LFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH-HhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 56789999999999999999999999999988999999999999743 33333332367899999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEC--CEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVEN--GEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~--~~~vGivt~~dll~ 170 (294)
++.|...+.+.+||+++ ++++|+++..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999986 89999999999864
No 43
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.56 E-value=3.5e-13 Score=123.74 Aligned_cols=118 Identities=24% Similarity=0.274 Sum_probs=105.2
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.+..++.++|.++++++.+++++.+|+++|.+++++.+||+| +++++|++|.+|+. . ... ..++.++|..++
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~-~-----~~~-~~~V~dIMt~~l 156 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL-G-----VDR-FTQVRDIMSTDL 156 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh-c-----CCC-CCCHHHHccCCc
Confidence 456788899999999999999999999999999999999998 47899999999984 1 122 357999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
+++++++++.+++++|.+++++.+||+| +++++|+||..||++...
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 9999999999999999999999999999 899999999999987543
No 44
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=8.8e-14 Score=105.40 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=90.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCC--------cccccccccccCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRP--------DQTVVSKIMTRNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~--------~~~~v~~~~~~~~~~v 130 (294)
++.++.+++++.+|++.|.++++..+||+|++ |+++|+++..|+++.+....... ....+.+++..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 56788999999999999999999999999987 99999999999975443221110 0012234667788899
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL 169 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll 169 (294)
.+++++.++++.|.+++.+.+||++ +++++|+||..|+.
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999998 78999999999874
No 45
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=8.4e-14 Score=103.35 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++.+++++.+|++.|.+.+...+||++++|+++|+++..|+.+.+.. .. ...++.++|..+++.+.+++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-~~--~~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-GG--PDAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-cC--CCCcHHHHhcCCCcEECCCCcHHHH
Confidence 46778999999999999998899999999988999999999999754432 22 2357888998888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+++...+||++ +|+++|+++..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999 699999999999864
No 46
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.8e-13 Score=101.39 Aligned_cols=107 Identities=31% Similarity=0.396 Sum_probs=93.6
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
++++.+.+++++.+|++.|.+++...+||+|++|+++|+++..|+++.+.. + ..++.+++..++..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCCCCeEECCCCcHHH
Confidence 467789999999999999999999999999988999999999999754322 1 13488888888889999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999998 889999999999853
No 47
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=5.3e-14 Score=108.46 Aligned_cols=112 Identities=25% Similarity=0.390 Sum_probs=95.8
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------------------CCccc
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------------------RPDQT 117 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------------------~~~~~ 117 (294)
+++.++.+++++.+|++.|.++++..+||+|++++++|+++..|+.+....+.. .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999988999999999999754322100 11245
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.++|..++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 78888988889999999999999999999999999999889999999999864
No 48
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.55 E-value=3e-14 Score=121.27 Aligned_cols=152 Identities=17% Similarity=0.233 Sum_probs=123.6
Q ss_pred EEEEEcCCCcEEEEEeHHHHHH-HHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEE
Q 041090 84 AVLLTDANALLSGIVTDKDITT-RVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEV 159 (294)
Q Consensus 84 ~lpV~d~~~~~~Givt~~di~~-~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~ 159 (294)
.+||+... .-.+|...++. ++..+....+-..|.++|. ..+.++.+++++.+..++..+.+..++||+| ..++
T Consensus 157 ~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kv 233 (432)
T COG4109 157 GLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKV 233 (432)
T ss_pred CCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceE
Confidence 35666532 23455555433 3333334444568899997 5677889999999999999999999999999 8999
Q ss_pred EEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcH
Q 041090 160 IAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPV 239 (294)
Q Consensus 160 vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 239 (294)
+|+++.+|+... ....++..+|++ +|+++.+.+++
T Consensus 234 vGvVt~rDv~~~-------------------------------------------~~~t~ieKVMtk--np~tv~~~tsV 268 (432)
T COG4109 234 VGVVTMRDVLDK-------------------------------------------KPSTTIEKVMTK--NPITVRAKTSV 268 (432)
T ss_pred EEEEEehhhhcC-------------------------------------------CCCccHHHHhcc--CCeeecccchH
Confidence 999999998642 334779999987 99999999999
Q ss_pred HHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccCCCC
Q 041090 240 AVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLSPE 283 (294)
Q Consensus 240 ~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~~ 283 (294)
..+.++|.-+++.-+||++ +++++|+||++|+++.+..-...|+
T Consensus 269 Asvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpq 313 (432)
T COG4109 269 ASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQ 313 (432)
T ss_pred HHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCc
Confidence 9999999999999999999 8999999999999988888777664
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.8e-13 Score=101.47 Aligned_cols=108 Identities=22% Similarity=0.360 Sum_probs=94.9
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+++++++.+.++.+|.+.|.+++.+.+||+|+ |+++|+++..|+.+ ...... ...++.++|..++..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~-~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~ 77 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEK-ALRHGL--GHAPVKDYMSTDVVTVPPDTPLSE 77 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHH-HHhccc--ccCcHHHHhcCCCEEECCCCcHHH
Confidence 36788999999999999999999999999998 99999999999964 333322 356788999889999999999999
Q ss_pred HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 78 ~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 78 VQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 99999999999999999889999999999864
No 50
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.55 E-value=1.8e-13 Score=101.60 Aligned_cols=109 Identities=32% Similarity=0.392 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
+++.+++++++.+|.+.|.+++.+.++|+|+ |+++|+++..|+++... .+......++.++|..+...+++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATFPLITVDPDDFLFNA 79 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCCCcEEECCCCcHHHH
Confidence 4567899999999999999999999999997 89999999999975433 222223567889998888899999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+++.+.+||+++++++|+++..++++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~ 110 (111)
T cd04589 80 LLLMTRHRIHRVVVREGGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence 9999999999999999889999999999864
No 51
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.5e-13 Score=102.10 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+++++++.+|++.|.+++++.+||+|++|+++|+++..|++... ..... ...++.++|..++..+.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD-LFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH-hhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 567899999999999999999999999999889999999999997432 22211 2456888888888899999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+++...+||+++|+++|+++..|++.
T Consensus 80 ~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 9999999999999999889999999999863
No 52
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=7.6e-14 Score=106.26 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=90.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc-------------cccccccccC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ-------------TVVSKIMTRN 126 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~-------------~~v~~~~~~~ 126 (294)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..|+++... +...... ....+.+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL-SPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc-CcchhhcccchhhhhhhhhcccccccccCC
Confidence 5678999999999999999999999999998999999999999975432 2211111 1122456677
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+.++++++++.++++.|.+++.+.+||++ +++++|++|..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 88899999999999999999999999999 799999999999864
No 53
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=106.02 Aligned_cols=110 Identities=21% Similarity=0.389 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc--------------------ccc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ--------------------TVV 119 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~--------------------~~v 119 (294)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.+. ....... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY-KGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh-ccCCcccccccccccccchHHHHHHcCCCH
Confidence 5678999999999999999999999999999899999999999975443 2221111 268
Q ss_pred ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
.+++.+++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 888888888999999999999999999999999999899999999999875
No 54
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.1e-13 Score=104.10 Aligned_cols=110 Identities=21% Similarity=0.356 Sum_probs=90.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|..++...+||++ +++++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 467889999999999999888899999999 78999999999987643210
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C---CeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G---SKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~---g~~vGivt~~Dil 272 (294)
......++.++|.+...+.++.+++++.+++++|.+++++.+||+| + |+++|+||+.|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011245677775222688999999999999999999999999998 4 6999999999997
No 55
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=2.1e-13 Score=101.32 Aligned_cols=109 Identities=32% Similarity=0.480 Sum_probs=94.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+.+++++.+|.+.|.+.+.+.+||+|++|+++|+++..|+++.+. .+... ..++.++|..++..+.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA-AGIDL-DTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh-ccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence 5678899999999999999999999999998899999999999975443 33322 457888988888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+.+...+||++ +|++.|+++..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 9999988888999999 799999999999864
No 56
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.3e-13 Score=102.90 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=92.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+++.+.+++++.++++.|.+.+.+.+||++ + ++++|+++..|+++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~--------------------------- 54 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG--------------------------- 54 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---------------------------
Confidence 467789999999999999888889999998 6 89999999999976543200
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
......++.++|.. ++.++++++++.+++++|.+.+...+||+++|+++|+|++.|+++
T Consensus 55 ---------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 55 ---------RDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFL 113 (114)
T ss_pred ---------CCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence 00112457788866 899999999999999999999999999999899999999999973
No 57
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.4e-13 Score=104.86 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=90.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH----HHcC-CCCcccccccccccCCeEE----
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV----IAEG-LRPDQTVVSKIMTRNPIFV---- 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~----~~~~-~~~~~~~v~~~~~~~~~~v---- 130 (294)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.. ..++ ......++.++|.++...+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 467889999999999999999999999999889999999999996421 2222 2233567889997654332
Q ss_pred --cCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHH
Q 041090 131 --TSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLY 170 (294)
Q Consensus 131 --~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~ 170 (294)
.+++++.++++.|.+++.+.+||++ + |+++|+||..|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2688999999999999999999999 5 79999999999875
No 58
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.54 E-value=1.5e-13 Score=102.30 Aligned_cols=110 Identities=33% Similarity=0.470 Sum_probs=96.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
+++++++++++.++++.|.+.+.+.+||++++|+++|+++..++.+ ++.+.......++.++|..++.++.+++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 4567899999999999999888899999998899999999999974 444443443457999998888899999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|...+.+.+||++ +++++|+++..|+++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999 899999999999864
No 59
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=2.8e-13 Score=100.66 Aligned_cols=110 Identities=24% Similarity=0.453 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+++++++.+|++.|.+.+.+.+||+++ ++++|+++..|+++.+..........++.+++..++..+.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence 5677899999999999999999999999996 499999999999865554432233557889998888889999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||+++++++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 81 AKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 9999999999999999559999999999863
No 60
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.1e-13 Score=104.93 Aligned_cols=110 Identities=28% Similarity=0.403 Sum_probs=94.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCC-----------cccccccccccCC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRP-----------DQTVVSKIMTRNP 127 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~-----------~~~~v~~~~~~~~ 127 (294)
++.++.++.++.+|++.|.+.+.+.+||+|++ |+++|+++..|+++.+ .+.... ...++.+++..++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL-GGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh-hccchhccccccccchhhhcCHHHHhcCCc
Confidence 56788999999999999999999999999987 9999999999997544 322211 1346888888889
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++++++++.++++.|.+.+.+.++|++ +|+++|+|+..|+++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999999999999 699999999999875
No 61
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.6e-13 Score=102.51 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=91.3
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
+.++.+++++.++++.|.+.+...++|++ +|+++|+++..|+++.....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~------------------------------ 52 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC------------------------------ 52 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc------------------------------
Confidence 45788999999999999999999999998 88999999999987532110
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.......++.++|.. ++.++.+++++.++++.|.+++..++||+| +|+++|+||++|++
T Consensus 53 ------~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 53 ------GGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred ------CCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence 001123567888866 899999999999999999999999999999 68999999999997
No 62
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=2e-13 Score=100.46 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=90.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
+++.++++.++.+|++.|.+++.+.+||+|++|+++|+++..|+++.. ...+.+++...+..+.+++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------ccchhhhcccCCEEECCCCCHHHH
Confidence 567889999999999999999999999999889999999999997421 124778887777889999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+.+...+||++ +++++|+++..++++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999999 789999999999864
No 63
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.4e-13 Score=102.69 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=90.5
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcH
Q 041090 60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLA 136 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 136 (294)
++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++.+|+++... .. ....++.++|.. .++.+.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~--~~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-SQ--WAQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-hh--ccccchhhhhcccccceEECCCCcH
Confidence 5678999999999999997765 889999998899999999999975432 21 124567888863 35678999999
Q ss_pred HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
.++++.|.+++.+.+||++ +++++|+++..|+++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999999 689999999998763
No 64
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=8.1e-14 Score=123.35 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=102.0
Q ss_pred ccccccccccC--CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTRN--PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+|+++|.++ ++++++++++.++.+.|.+.+...+||+| +|+++|+++..|+.+....
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------ 257 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------ 257 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence 45789999887 89999999999999999888888999999 8999999999998653211
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
......++.++|.+ ++.++.+++++.+|++.|.+++...+||+| +|+++|+||+.|+
T Consensus 258 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 258 --------------------GGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred --------------------CCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 00123457899977 899999999999999999999999999999 7899999999999
Q ss_pred HHH
Q 041090 272 LMR 274 (294)
Q Consensus 272 l~~ 274 (294)
+++
T Consensus 316 ~~~ 318 (321)
T PRK11543 316 YQA 318 (321)
T ss_pred Hhc
Confidence 843
No 65
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.53 E-value=2.9e-13 Score=99.98 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=93.0
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+++..++++.++.+|++.|.++++..+||+|++|+++|+++..|++... . ...++.++|...+..+++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~-----~~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-K-----EAKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh-h-----cCCcHhHhhcCCceEECCCCcHHH
Confidence 3567899999999999999999999999999889999999999996432 1 124678888888899999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999998999999999 789999999999863
No 66
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.6e-13 Score=104.75 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=93.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC------------CCCcccccccccccCC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG------------LRPDQTVVSKIMTRNP 127 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~------------~~~~~~~v~~~~~~~~ 127 (294)
++..+.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.+.... ......++.++|..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 5677899999999999999999999999999999999999999975432210 0012346888898888
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLY 170 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~ 170 (294)
+++.+++++.++++.|.+.+.+.+||++ +++++|+|+..|+++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 9999999999999999998889999885 489999999999874
No 67
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=9.7e-14 Score=104.70 Aligned_cols=115 Identities=21% Similarity=0.275 Sum_probs=87.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++++++++.++++.|.+++++.+||++ +|+++|+++..|++......... .....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~--------------------~~~~~- 60 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN--------------------NLDLT- 60 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc--------------------cccCC-
Confidence 567889999999999999999999999998 89999999999998643211000 00000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
+.+. .....+|.. ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||++|++
T Consensus 61 ------~~~~---~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 61 ------VGEA---LERRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred ------HHHH---HhhcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0000 011223333 678999999999999999999999999999 68999999999997
No 68
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.53 E-value=3e-13 Score=100.21 Aligned_cols=108 Identities=33% Similarity=0.481 Sum_probs=93.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+++++++.+|++.|.+++...+||+++ ++++|+++..|+++.... ... ...++.++|..+++++.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLAS-GPD-LQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhc-CCC-CCcCHHHhcCCCceEECCCCCHHHH
Confidence 4678999999999999999989999999986 899999999999754432 222 3567889998888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999999 799999999999864
No 69
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.3e-13 Score=100.58 Aligned_cols=105 Identities=24% Similarity=0.327 Sum_probs=93.8
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
.++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|++.. ....++.++|...+.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc-------cccccHHHHhcCCCeEECCCCCHHH
Confidence 367889999999999999999999999999999999999999999631 1245788999888899999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999 899999999999864
No 70
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.52 E-value=1.5e-13 Score=119.25 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=114.5
Q ss_pred EEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHH
Q 041090 96 GIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYD 171 (294)
Q Consensus 96 Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~ 171 (294)
|.+...+- .++.+...+.+.+++++|.+ ++++++.++++.++++.+.+.+++++||++ + ++++|+++..|++..
T Consensus 48 g~l~~~e~--~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDTR--DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHHH--HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 56665552 44555567778899999987 588999999999999999999999999998 4 789999999999753
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCC
Q 041090 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRS 251 (294)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~ 251 (294)
... ......+.++|. ++.++++++++.++++.|.+.+.
T Consensus 126 ~~~---------------------------------------~~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 126 MRS---------------------------------------DAEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred hhc---------------------------------------cCCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCC
Confidence 210 000123667774 35689999999999999999999
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHccCC
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQNLS 281 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~ 281 (294)
+.+||+| .|.++|+||..||+..++.+-.+
T Consensus 164 ~~a~VvDe~G~viGiVTleDIle~ivGei~d 194 (292)
T PRK15094 164 HMAIVIDEFGGVSGLVTIEDILELIVGEIED 194 (292)
T ss_pred EEEEEEeCCCCEEEEeEHHHHHHHHhCCCcc
Confidence 9999999 68899999999999888876443
No 71
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.9e-13 Score=100.87 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
.+.++.+++++.++++.|.+.+...++|++ +|+++|+++..|+++....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~------------------------------ 52 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLK------------------------------ 52 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhc------------------------------
Confidence 356789999999999999888888999998 7899999999998753221
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
......++.++|.. .+.++.+++++.++++.|.+.+.+.+||++ +|+++|+||++|++
T Consensus 53 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 53 --------GLSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred --------CCCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 01122457788866 788999999999999999999999999998 79999999999997
No 72
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=4e-13 Score=100.38 Aligned_cols=109 Identities=27% Similarity=0.400 Sum_probs=91.0
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCC--CcH
Q 041090 60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSD--SLA 136 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l 136 (294)
++.+++++.++.+|++.|.+++ .+.++|.+ +|+++|+++..|+++ ...........++.++|..+++.+.++ +++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~-~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l 79 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDI 79 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHH-HHhcCCCccccCHHHhcCCCcEEEecccccCH
Confidence 4667899999999999998888 67778777 589999999999975 333333333467889998888888876 689
Q ss_pred HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus 80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999 799999999999875
No 73
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.6e-13 Score=102.34 Aligned_cols=110 Identities=29% Similarity=0.389 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------CCcccccccccccCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------RPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~v 130 (294)
+++++.+++++.+|++.|.+++.+.+||+|+ |+++|+++..|+++.+..... .....++.++|..++..+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 5678999999999999999999999999996 999999999999754432211 112457888888889999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
.+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999999998889999999999874
No 74
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=2.4e-13 Score=98.50 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=82.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++.+++++.++++.|.+.++..+||++ +|+++|+++..|++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 467889999999999999989999999999 8999999999998631
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
..+.++.+++++.+++++|.+++.+.+||++ +|+++|+||++|+++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1377899999999999999999999999999 589999999999983
No 75
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=3.9e-13 Score=100.06 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=91.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..+.+++++.++++.|.+.+...++|++ +++++|+++..|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 356789999999999999988889999999 78999999999997643220
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
+.....++.++|.. ++.++.+++++.++++.|.+.+...+||++ +|+++|++|..|+++
T Consensus 53 --------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 53 --------EELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --------hhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 11123457788866 899999999999999999999999999998 689999999999974
No 76
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.51 E-value=4.7e-13 Score=99.10 Aligned_cols=107 Identities=26% Similarity=0.387 Sum_probs=93.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+++++++.+|.+.|.+++++.+||+++ ++++|+++..|+++. ..++.. ..++.+++..++..+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~-~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~ 77 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA-IARGLE--LAKVKDVMTKDVITIDEDEQLYDA 77 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH-Hhcccc--ccCHHHHhcCCceEECCCCCHHHH
Confidence 5678999999999999999999999999998 999999999999753 333222 256888888888999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|...+.+.+||++ +|+++|+++..|+++
T Consensus 78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999999 699999999999864
No 77
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.51 E-value=5.4e-13 Score=98.95 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=91.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.+++.+.++.++.+.|.+.+++.+||+++++++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc------------------------------
Confidence 56778999999999999988888899999989999999999987543210
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
......++.++|.. ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 52 -------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 -------GLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred -------CCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 00112457788866 89999999999999999999999999999989999999999998
No 78
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.51 E-value=4e-13 Score=101.17 Aligned_cols=110 Identities=29% Similarity=0.440 Sum_probs=93.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC---------CcccccccccccCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR---------PDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~---------~~~~~v~~~~~~~~~~v 130 (294)
++.+++++.++.+|++.|.+.+...+||+|+ |+++|+++..|+++........ ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 5678999999999999999999999999997 9999999999997544322111 11356788888889999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999999999999 699999999999875
No 79
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=6.3e-13 Score=98.48 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=91.8
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++++.+.++.++.+.|.+.+...+||+++++++|+++..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------ 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------ 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence 35678899999999999998888889999988899999999998653211
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.....++.++|.. .+.++.+++++.+++++|.+.+.+.+||+++|+++|+||..|++
T Consensus 52 ---------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 52 ---------GLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ---------ccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 0123567888866 89999999999999999999999999999999999999999997
No 80
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=3.6e-13 Score=98.83 Aligned_cols=102 Identities=22% Similarity=0.314 Sum_probs=89.1
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++..+.+++++.++++.|.+.+...+||+++++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 45678999999999999988888899999988999999999986421
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
...++.++|.. .+.++++++++.++++.|.+.+...+||+++|+++|+||..|++
T Consensus 49 ----------~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 11346777866 89999999999999999999999999999999999999999997
No 81
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.51 E-value=4.9e-13 Score=99.19 Aligned_cols=107 Identities=18% Similarity=0.288 Sum_probs=91.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..|+++.. ..... ...+.+++ .++.++.+++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~-~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRAL-AEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHH-HcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 46789999999999999999999999999988 9999999999997544 32221 14566665 46788999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.|..++.+.+||++ +|+++|++|..|++.
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 99999999999999999 799999999999864
No 82
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.1e-13 Score=102.96 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC---CC-----CcccccccccccCCeEEc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG---LR-----PDQTVVSKIMTRNPIFVT 131 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~ 131 (294)
++.++++++++.+|++.|.+.+++.+||+|++|+++|+++..|+++...... .. ....++.+++..++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 5678999999999999999999999999998899999999999974321110 00 124567888888888999
Q ss_pred CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
.++++.++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 999999999999999999999999 799999999999874
No 83
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.51 E-value=3.5e-13 Score=100.72 Aligned_cols=109 Identities=23% Similarity=0.373 Sum_probs=90.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..+.+++++.++++.|.+.+++.++|++ +|+++|+++..||+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEAD----------------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence 456788999999999999988899999999 79999999999997643220
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C--CeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G--SKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~--g~~vGivt~~Dil~ 273 (294)
......++.++|.. .+.++.+++++.+++++|.+++...+||+| + |+++|+||..|+++
T Consensus 53 --------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 53 --------EAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --------cccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 00011336777766 899999999999999999999999999998 4 79999999999983
No 84
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.7e-13 Score=101.21 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=88.5
Q ss_pred CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+..++++++++.++++.|.+++ ...+||++ +|+++|+++..|++.....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~----------------------------- 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS----------------------------- 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh-----------------------------
Confidence 4567899999999999887664 78899999 7899999999998764321
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.....++.++|.....+.++.+++++.+|++.|.+.+.+.+||++ +|+++|++|.+||++
T Consensus 53 ----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 53 ----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 011245677775322467899999999999999999999999999 589999999999973
No 85
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.50 E-value=2.5e-13 Score=117.15 Aligned_cols=112 Identities=29% Similarity=0.376 Sum_probs=100.1
Q ss_pred cchhccccCC-ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090 51 RTVKKLRLSK-ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129 (294)
Q Consensus 51 ~~v~dl~~~~-~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (294)
++|+++|.++ ++.+.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.+ ..+.. ...+++++|.+++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~-~~~~~-~~~~v~~im~~~~~~ 232 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL-LGGGS-LKSEVRDFMTLGPKT 232 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH-hcCCc-ccCcHHHhCCCCCeE
Confidence 7899999998 99999999999999999999999999999999999999999997533 32222 356799999989999
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEe
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILD 164 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt 164 (294)
+.+++++.++++.|.+.+.+.+||++ +|+++|+|+
T Consensus 233 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 233 FKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999 789999984
No 86
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=5.9e-13 Score=98.80 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=90.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..++++.++.++++.|.+.+++.+||++ +|+++|+++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 456789999999999999988999999999 79999999999997532210
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.....++.++|.+ ++.++.+++++.++++.|.+++...+||+++|+++|+||..|++
T Consensus 53 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 0012457778866 89999999999999999999999999999989999999999997
No 87
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.5e-13 Score=102.80 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=94.5
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+++.++.+++++.++.+.|.+.+++++||++ +|+++|+++..+++.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~------------------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR------------------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence 4677899999999999999988899999998 79999999999997643221000
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.............++.++|.+ .+.++.+++++.+++++|.+.+.+.+||++ +|+++|+||+.|+++
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 57 --PLRGRLRGRDKPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred --hhhhhhhcccccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 000000011123457888866 899999999999999999999999999999 899999999999973
No 88
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.50 E-value=1.3e-13 Score=104.82 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=90.9
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
++++++.++.++.++++.|.+.++..+||++ +++++|+++..+++......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence 4577899999999999999999999999999 78999999999998643321
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHH---------HhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMR---------EFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
......++.++|.. ++.++.+++++.++.++|. ..+.+.+||++ +|+++|+||+.|+++
T Consensus 54 ---------~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~ 122 (124)
T cd04608 54 ---------KVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred ---------ccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence 01134679999977 9999999999999999653 33567788888 699999999999984
No 89
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=7.9e-13 Score=97.90 Aligned_cols=105 Identities=29% Similarity=0.485 Sum_probs=90.1
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
++++.+.++.++.++++.|.+.++..++|++ +|+++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 4667889999999999999988899999999 78999999999997532210
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
..++.++|.. ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||+.|++
T Consensus 54 -------------~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 0236677765 899999999999999999999999999998 78999999999997
No 90
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=6.5e-13 Score=98.67 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=90.0
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
...++.+++++.++++.|.+.+.+.++|.++|+++|+++..|+++..... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------~------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQH----------------------G------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhc----------------------C-------
Confidence 35678999999999999987777777777789999999999997643210 0
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
......++.++|.. .+.++.+++++.+++++|.+++...+||+++|+++|+||++|+++
T Consensus 53 -------~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 53 -------AGVLDTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred -------CchhcCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 00112457888866 788999999999999999999999999999999999999999983
No 91
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=8.2e-13 Score=98.11 Aligned_cols=109 Identities=28% Similarity=0.372 Sum_probs=91.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.++.++.++++.|.+.+++.+||++ +++++|+++..+++.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~---------------------------- 53 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG---------------------------- 53 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC----------------------------
Confidence 456788999999999999988999999998 799999999999976432200
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
......++.++|.. ++.++.+++++.++++.|.+.+.+.+||+++|+++|+||..|++
T Consensus 54 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 111 (113)
T cd04623 54 --------ASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVV 111 (113)
T ss_pred --------CCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence 00012457788866 89999999999999999999999999999989999999999997
No 92
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=5e-13 Score=103.19 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=95.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.+...+||+| +++++|+++..|++............ +.. ..++...+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~-~~~-----~~~~~~~~------ 69 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLP-KKS-----IKMKRKAG------ 69 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccc-hhh-----hhhhhhcc------
Confidence 456789999999999999988888999999 79999999999998754321000000 000 00000000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
............++.++|.. ++..+.+++++.++++.|.+.+.+.+||+++|+++|+||..|+++
T Consensus 70 --~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 70 --QKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred --cccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 00000111234568899966 889999999999999999999999999999999999999999983
No 93
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=6e-13 Score=99.14 Aligned_cols=111 Identities=28% Similarity=0.419 Sum_probs=92.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..++++.++.++++.|.+.+...+||++ +++++|+++..++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--------------------------- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence 456789999999999999888888899999 7899999999999865433100
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
......++.++|.. ++..+.+++++.++++.|.+.+.+.+||+++|+++|+||.+|+++
T Consensus 55 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 55 --------HCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred --------ccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 00112457788866 889999999999999999999999999999899999999999973
No 94
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.8e-13 Score=99.45 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=90.2
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
.++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD------------------------------- 50 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence 3567889999999999999988888999999 89999999999986310
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
...++.++|.. .+.++.+++++.+++++|.+.+...+||++ +|+++|++|..|++
T Consensus 51 ------------~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 51 ------------PDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred ------------ccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 12357788866 899999999999999999999999999998 79999999999997
No 95
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.2e-13 Score=104.07 Aligned_cols=132 Identities=22% Similarity=0.316 Sum_probs=95.4
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+++.++.+++++.++++.|.+.+++.+||++ +++++|+++..++++............ | ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~------------~-~~~~~~- 67 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRAR------------W-LDLLAG- 67 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhh------------H-HHHhcc-
Confidence 4667889999999999999999999999999 789999999999986433211000000 0 000000
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
. .............++.++|.. ++..+.+++++.++++.|.+.+.+.+||+|+|+++|+||+.|+++
T Consensus 68 ~-~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 68 A-EELAAAFVRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred h-HHHHHHHHHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 0 000000001123568889966 899999999999999999999999999999999999999999973
No 96
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.49 E-value=8.4e-13 Score=97.80 Aligned_cols=108 Identities=30% Similarity=0.446 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++..+++++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+.. .... .....+.+++..++..+.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP-AEGR-EATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH-hcCc-ccccCHHHhccCCCeEECCCCCHHHH
Confidence 5678999999999999999998999999998 9999999999997433 2221 11236778888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||++ +++++|+++..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999999 699999999999864
No 97
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.49 E-value=6.3e-13 Score=123.16 Aligned_cols=121 Identities=20% Similarity=0.208 Sum_probs=103.2
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
++.++++++|.+++.++.+++++.+|++.|.+++++.+||+|++++++|+|+..|+++.+.... .....++.++|..++
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~im~~~~ 410 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-ANPDDAVSKVMSKKF 410 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-CCcCCCHHHhcCCCC
Confidence 6778999999999999999999999999999999999999998899999999999976554322 222457999998888
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~ 171 (294)
.++++++++.++++.|.+++ ..+|+++++++|+||..|+++.
T Consensus 411 ~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 411 IQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred eEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHh
Confidence 89999999999999998754 3444458999999999999875
No 98
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=8.6e-13 Score=99.93 Aligned_cols=116 Identities=23% Similarity=0.239 Sum_probs=87.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
++.++.+++++.++++.|.+.+++++||++ + ++++|+++..|+++.......... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~-------------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--G-------------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--c--------------------
Confidence 466789999999999999988899999999 6 899999999999875432110000 0
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
..... .......++|.. ++.++.+++++.+|++.|.+++.+++||+| +|+++|+||..|+
T Consensus 60 ----~~~~~--~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 60 ----LDPLY--PIPLRDLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ----hhhhh--hhhhhhcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 00000 000112335544 889999999999999999999999999998 7899999999998
No 99
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.49 E-value=3.5e-13 Score=124.56 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=102.0
Q ss_pred cchhcccc---CCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090 51 RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124 (294)
Q Consensus 51 ~~v~dl~~---~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 124 (294)
.+|+++|. ...+++++++|+.+|++.|.+++++.+||+|+ +++++|+||.+|+. .. ......+++++|.
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~----~~~~~~~V~dIMt 168 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS----RMSLDTKVKDFMT 168 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc----ccCCCCCHHHHhC
Confidence 35888886 35678999999999999999999999999996 58999999999994 21 1233568999998
Q ss_pred c--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 125 R--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 125 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
+ +++++.+++++.+++++|.++++..+||+| +++++|+||..|+++..
T Consensus 169 ~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 169 PFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 6 778899999999999999999999999999 79999999999999864
No 100
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.49 E-value=1.1e-12 Score=120.61 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=120.3
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHH
Q 041090 65 PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMV 144 (294)
Q Consensus 65 ~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~ 144 (294)
.+-+||.+.-....-.+.+.+-|+..+ .+..+....+ ...++.++|..+++++.+++++.++++.|.
T Consensus 49 a~mdtvTe~~MAi~~A~~GGigvIh~n------~~i~~qae~v-------~~VKv~eim~~~pvtv~p~~tI~eA~~lm~ 115 (475)
T TIGR01303 49 ANMTAVAGRRMAETVARRGGIVILPQD------LPIPAVKQTV-------AFVKSRDLVLDTPITLAPHDTVSDAMALIH 115 (475)
T ss_pred ccchhhHHHHHHHHHHHCCCEEEEeCC------CCHHHHHHHH-------hhcchhhccccCCeEECCCCCHHHHHHHHH
Confidence 445677776655544556677777743 2344432211 145666788889999999999999999999
Q ss_pred hCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhh
Q 041090 145 QGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTII 224 (294)
Q Consensus 145 ~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im 224 (294)
+.+++.++|+++++++|++|..|+... ....++.++|
T Consensus 116 ~~~~~~~vVvD~gklvGIVT~rDL~~~-------------------------------------------~~~~~V~dIM 152 (475)
T TIGR01303 116 KRAHGAAVVILEDRPVGLVTDSDLLGV-------------------------------------------DRFTQVRDIM 152 (475)
T ss_pred hcCCeEEEEEECCEEEEEEEHHHhhcC-------------------------------------------CCCCCHHHHc
Confidence 999988889888899999999998321 0114588999
Q ss_pred hcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 225 TENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 225 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
.. +++++++++++.+|+++|.+++++.+||+| +|+++|+||++||++...
T Consensus 153 t~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 153 ST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred cC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 77 999999999999999999999999999999 899999999999995433
No 101
>PRK11573 hypothetical protein; Provisional
Probab=99.48 E-value=6.9e-13 Score=120.48 Aligned_cols=128 Identities=12% Similarity=0.118 Sum_probs=108.1
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
+..+.+|+|+|++ ++.+++.++++.++++.+.+++++.+||++++ +.++|+++.+|++... .++.......+.+++
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~-~~~~~~~~~~l~~~~ 261 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM-TEKKEFTKENMLRAA 261 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh-hccCcCCHHHHHhhc
Confidence 5788999999999 89999999999999999999999999999864 7899999999998533 222222223344555
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM 176 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~ 176 (294)
+++..++++.++.++++.|.+++.|...|+| .|...|+||.+|+++.+...+
T Consensus 262 -r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 262 -DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred -cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 4778899999999999999999999999999 899999999999999877644
No 102
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=8.4e-13 Score=98.09 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=91.1
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..+..+.++.++++.|.+.++..+||++ +++++|+++..++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence 456789999999999999888899999999 79999999999997643220
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.....++.++|.. ++.++.+++++.++++.|.+.+...+||++ +|+++|++|+.|+++
T Consensus 53 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 53 ---------IDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ---------CCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 0112457788866 899999999999999999999999999998 699999999999973
No 103
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.48 E-value=1.5e-12 Score=96.62 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=90.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
+++.++++.++.++++.|.+.+...++|+++++++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 45678999999999999988888889998878899999999987532110
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
......++.++|.. ++..+++++++.++++.|.+.+...+||+++|+++|+||..|++
T Consensus 52 -------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 00123457788866 89999999999999999999999999999999999999999997
No 104
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.48 E-value=9.3e-13 Score=97.05 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=88.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLA 136 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 136 (294)
...++.+++++.++.+.|.+.+...+||+++ +|+++|+++.+|+.+.... +|..++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~~~~v~~~~~l 70 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------YIDPSPFTVSPRTSL 70 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------hccCCCceECCCCcH
Confidence 4567899999999999999998889999998 6999999999999744321 677788899999999
Q ss_pred HHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 137 IEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
.++++.|.+++.+.+||+++|+++|+++..|+++
T Consensus 71 ~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence 9999999999999999999899999999999864
No 105
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.5e-12 Score=95.47 Aligned_cols=102 Identities=24% Similarity=0.399 Sum_probs=90.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++.+++++.++++.|.+++...+||+| +++++|+++..|+++. . ....+.++|..++..+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~------~-~~~~~~~~~~~~~~~v~~~~~l~~~ 73 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA------H-PNRLVADAMTREVVTISPEASLLEA 73 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc------c-ccCCHHHHccCCCEEECCCCCHHHH
Confidence 567789999999999999999999999998 6899999999999631 1 1346888898889999999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCL 169 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll 169 (294)
++.|.+++...+||+++|+++|++|..+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 74 KRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred HHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 999999999999999989999999999986
No 106
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=4.2e-13 Score=123.36 Aligned_cols=115 Identities=14% Similarity=0.207 Sum_probs=101.2
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..++.++|..+++++.+++++.++++.|.+.+++.+||+| +++++|+|+..|+...
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~----------------------- 144 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV----------------------- 144 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-----------------------
Confidence 4566788999999999999999999999999999999999 8899999999998321
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
....++.++|.. ++.++++++++.+|+++|.+++++.+||+| +|+++|+||++||++
T Consensus 145 --------------------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~ 202 (479)
T PRK07807 145 --------------------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALR 202 (479)
T ss_pred --------------------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 011458899977 999999999999999999999999999999 799999999999995
Q ss_pred HH
Q 041090 274 RV 275 (294)
Q Consensus 274 ~~ 275 (294)
..
T Consensus 203 ~~ 204 (479)
T PRK07807 203 AT 204 (479)
T ss_pred Hh
Confidence 43
No 107
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.47 E-value=1e-12 Score=97.14 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=88.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..|+.+.+.... .....++.+++..++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~ 79 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGEPLPTVDPDAPIEEL 79 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcCCCceeCCCCcHHHH
Confidence 4577899999999999999999999999997 99999999999975443222 222457888888888889999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++|.+ .. .+||++ +++++|+++..|+++
T Consensus 80 ~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 80 SELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 999987 33 467787 799999999999875
No 108
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=9.1e-13 Score=98.44 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=87.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.+++++.++.++++.|.+.+ ...++|+++|+++|+++..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIG----------------------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcC-----------------------------
Confidence 4567899999999999998777 5667777788999999999997532210
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCC--CcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPS--DPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
......++.++|.. ++.++.++ +++.+++++|.+.+...+||+| +|+++|+||++|+++
T Consensus 53 --------~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 53 --------KDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------CCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 00012457788866 78888887 7899999999999999999999 799999999999983
No 109
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.47 E-value=1.3e-12 Score=96.12 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=87.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++++++++.++.++++.|.+.+.+.++|++ +|+++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 456789999999999999888888999999 89999999999986421
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
..++.++|.+ .+.++.+++++.++++.|.+.+...+||++ +|+++|+||++|++
T Consensus 50 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0235677755 678899999999999999999999999999 68999999999997
No 110
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.7e-12 Score=97.74 Aligned_cols=118 Identities=25% Similarity=0.280 Sum_probs=93.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
+++++.+++++.++++.|.+.+++.++|+++|+++|+++..+++.......... +
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~---------------------~---- 56 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV---------------------R---- 56 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc---------------------c----
Confidence 567789999999999999888899999999899999999999976433211000 0
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
...........++.++|.. ++.++.+++++.+++++|.+.+.+.+||+++|+++|+||..|++
T Consensus 57 --~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 57 --DRHQERRIRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred --chhhhhhhhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 0000111223467788866 89999999999999999999999999999989999999999997
No 111
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.47 E-value=4.2e-13 Score=120.99 Aligned_cols=123 Identities=24% Similarity=0.246 Sum_probs=108.3
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
...+.+++..+++++++.+++.+|.+.|...+++.+.+++ ++...||+|..|+....+...
T Consensus 148 ~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g------------------ 209 (610)
T COG2905 148 LTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG------------------ 209 (610)
T ss_pred HHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC------------------
Confidence 4467888889999999999999999999999999888888 899999999999987655421
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR 274 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~ 274 (294)
.-...++.++|+. ++++++.++.+.+|+-+|...+++++||.++|+++|+||..||+ +
T Consensus 210 -------------------~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl-~ 267 (610)
T COG2905 210 -------------------RSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-R 267 (610)
T ss_pred -------------------CCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHH-H
Confidence 1123579999988 99999999999999999999999999999999999999999999 5
Q ss_pred HHHc
Q 041090 275 VVAQ 278 (294)
Q Consensus 275 ~~~~ 278 (294)
+...
T Consensus 268 l~s~ 271 (610)
T COG2905 268 LFSQ 271 (610)
T ss_pred hhCC
Confidence 5553
No 112
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.47 E-value=1.6e-12 Score=97.87 Aligned_cols=111 Identities=28% Similarity=0.333 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC--------CCcccccccccccCCeEEc
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL--------RPDQTVVSKIMTRNPIFVT 131 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~ 131 (294)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+....... .....++.++|..++.++.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 56788999999999999999999999999988999999999999643321100 1234568888888889999
Q ss_pred CCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 132 SDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
.++++.++++.|.+.+.+.+||+++++++|+++..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 999999999999999999999998889999999999864
No 113
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.47 E-value=2e-12 Score=96.68 Aligned_cols=111 Identities=33% Similarity=0.486 Sum_probs=96.1
Q ss_pred ccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCC
Q 041090 55 KLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDS 134 (294)
Q Consensus 55 dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 134 (294)
++|.++++++.+++++.+|...|.++++..+||++. ++++|++|.+|+++.+....... .++.++|..+++++.++.
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~ 79 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDT 79 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc--ccHHHhccCCcEEECCCC
Confidence 445578999999999999999999999999999984 47999999999986654433222 268899988899999999
Q ss_pred cHHHHHHHHHh-CCCcEEEEEE-CC-EEEEEEehHHH
Q 041090 135 LAIEALQKMVQ-GKFRHLPVVE-NG-EVIAILDITKC 168 (294)
Q Consensus 135 ~l~~~~~~~~~-~~~~~~~V~~-~~-~~vGivt~~dl 168 (294)
++.++.+.|.+ +++..+||++ ++ +++|+++..|+
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 99999999999 6999999999 64 99999999886
No 114
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=9.1e-13 Score=97.54 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=88.2
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 64 IPEGTIVSDACRRMASRR-----VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 64 v~~~~sv~~a~~~~~~~~-----~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+.+++++.++++.|.+++ ...+||+|++|+++|+++.+|+++ . . ...++.+++..++..+.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~-----~-~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL-----A-D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc-----C-C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 578999999999998877 478999998899999999999863 1 1 245788898888889999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+++.|...+.+.+||++ +++++|+++..++++.
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 99999999999999998 8999999999999864
No 115
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1e-12 Score=100.79 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=96.2
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.+++.+||+| +++++|+++..+++........... ..+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence 467789999999999999888888999999 7899999999999865432100000 000000000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.. +...+.....++.++|.+ ++..+.+++++.+++.+|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 222333444578899976 89999999999999999999999999999999999999999998
No 116
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.46 E-value=1.6e-12 Score=95.45 Aligned_cols=100 Identities=26% Similarity=0.280 Sum_probs=88.4
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHH
Q 041090 62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQ 141 (294)
Q Consensus 62 ~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 141 (294)
.++.+++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+++.. ..++.++|...+.+++++.++.++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~--------~~~~~~~~~~~~~~v~~~~~l~~a~~ 74 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT--------YGDVVDYIVRGIPYVRLTSTAEEAWE 74 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc--------ccchhhhhhcCCcEEcCCCCHHHHHH
Confidence 46889999999999999999999999997 9999999999996421 23467788888889999999999999
Q ss_pred HHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 142 KMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 142 ~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
.|.+++...+||+++|+++|+++..|++.
T Consensus 75 ~~~~~~~~~~~Vv~~~~~iGvit~~dl~~ 103 (104)
T cd04594 75 VMMKNKTRWCPVVDDGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence 99999999999999889999999999864
No 117
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.46 E-value=1.3e-12 Score=95.87 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=86.4
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhh
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAF 207 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 207 (294)
+.++++.++.++++.|.+.+++.+||+++++++|+++..+++...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 467899999999999998899999999889999999999986421
Q ss_pred HHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 208 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
..++.++|.. .+.++.++.++.++++.|.+++...+||+++|+++|+||..|++
T Consensus 49 ---------~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 0235566755 78999999999999999999999999999999999999999997
No 118
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.6e-12 Score=95.72 Aligned_cols=104 Identities=20% Similarity=0.379 Sum_probs=91.3
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 138 (294)
+++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++.. . ....+.++|...+.++.+++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~------~-~~~~~~~~~~~~~~~v~~~~~l~~ 73 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK------D-PDETVEEIMSKDLVVAVPEMDIMD 73 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc------C-ccccHHHhCCCCCeEECCCCCHHH
Confidence 46778999999999999999888889999997 999999999999631 1 235688999888889999999999
Q ss_pred HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
+++.|.+++.+.+||++ +|+++|+++..++++
T Consensus 74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999 789999999999874
No 119
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.46 E-value=1.2e-12 Score=119.02 Aligned_cols=132 Identities=13% Similarity=0.221 Sum_probs=109.3
Q ss_pred HHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC--CEEEEEEehHHHHHHHHHHHHHHHhh
Q 041090 107 VIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN--GEVIAILDITKCLYDAISRMEKAAEQ 182 (294)
Q Consensus 107 ~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~vGivt~~dll~~~~~~~~~~~~~ 182 (294)
++.+..+..+.+++++|.+ ++++++.++++.++++.+.+++++++||+++ ++++|+++.+|++.....
T Consensus 181 ~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------- 252 (408)
T TIGR03520 181 ILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------- 252 (408)
T ss_pred HHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------
Confidence 3444456778899999986 6889999999999999999999999999983 689999999999753110
Q ss_pred chhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCe
Q 041090 183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSK 261 (294)
Q Consensus 183 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~ 261 (294)
...++.++|. ++.++++++++.++++.|.+++.+.++|+| .|.
T Consensus 253 ---------------------------------~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 253 ---------------------------------KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred ---------------------------------CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 0123566663 588999999999999999999999999999 599
Q ss_pred EeEeeehhHHHHHHHHccCCC
Q 041090 262 IQGILTSKDVLMRVVAQNLSP 282 (294)
Q Consensus 262 ~vGivt~~Dil~~~~~~~~~~ 282 (294)
++|+||..||++.++.+-.+.
T Consensus 297 ~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 297 TSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred EEEEEEHHHHHHHHhCCCCCc
Confidence 999999999998887765443
No 120
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.46 E-value=1.8e-12 Score=95.72 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=89.8
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
.++..+.++.++.++++.|.+.++..++|++ +++++|+++..|++....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 3567789999999999999988899999999 789999999999865321
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
...++.++|.. .+..+.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 11346777866 889999999999999999999999999999 79999999999997
No 121
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.7e-12 Score=98.02 Aligned_cols=110 Identities=23% Similarity=0.355 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC-------C--CcccccccccccCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL-------R--PDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~-------~--~~~~~v~~~~~~~~~~v 130 (294)
+++.+++++++.+|++.|.+++++.+||+|+ |+++|+++..|+.+.+..... + ....++.++|..+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 5678999999999999999999999999996 999999999999754321100 0 01346888888889999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
.+++++.++++.|.+++...+||++ +++++|+++..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 9999999999999999999999998 799999999999875
No 122
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.46 E-value=2e-12 Score=95.71 Aligned_cols=107 Identities=19% Similarity=0.293 Sum_probs=90.5
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++..++++.++.++++.|.+.+.+.+||+++++++|+++..|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASG------------------------------ 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcC------------------------------
Confidence 45678999999999999998888899999989999999999987643210
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....++.++|.. ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|+..|++
T Consensus 52 --------~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 52 --------PDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred --------CCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 0023457788866 899999999999999999999999999998 69999999999997
No 123
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.6e-12 Score=98.52 Aligned_cols=120 Identities=27% Similarity=0.373 Sum_probs=93.1
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..+++........... .....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~----------------~~~~~-- 63 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK----------------IKTGN-- 63 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc----------------ccccc--
Confidence 456789999999999999988888999998 5 899999999999865432100000 00000
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.......++.++|.. .+.++++++++.++++.|.+.+.+.+||++ +|+++|+||..||++
T Consensus 64 --------~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 64 --------GLEAINEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred --------cchhhhcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 011123467888866 899999999999999999999999999999 599999999999983
No 124
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=3.2e-12 Score=94.91 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=90.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++..+++++++.++++.|.+.+.+.+||+++++++|+++..|++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence 456789999999999999988889999999669999999999986432200
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
......++.++|.. ++..+.+++++.++++.|.+.+.+.+||+++++++|+|++.|+++
T Consensus 53 -------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 53 -------LKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred -------CCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 00112457788865 889999999999999999999999999999669999999999973
No 125
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.5e-12 Score=96.60 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=89.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.+...+||++ +|+++|+++..++.+....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~------------------------------ 51 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE------------------------------ 51 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh------------------------------
Confidence 456789999999999999888888999999 6999999999998754321
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....++.++|.. ++.++.+++++.++++.|.+++...+||++ +|+++|++|..|+.
T Consensus 52 ---------~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 52 ---------GGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ---------cCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 0012357788866 899999999999999999999999999999 59999999999997
No 126
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.45 E-value=2.7e-12 Score=94.64 Aligned_cols=110 Identities=27% Similarity=0.443 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++++++++.++++.|.+++...+||++++++++|+++..|++....... ......+.+++..++..+.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcCCceecCCCcCHHHH
Confidence 4677899999999999999999999999998899999999999976553322 221222667788888889999999999
Q ss_pred HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.++|++ +++++|+++..++++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999899999999 799999999999864
No 127
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.45 E-value=3.1e-12 Score=94.65 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=90.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++..+++++++.++++.|...+++.+||+++++++|+++..++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG------------------------------ 51 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc------------------------------
Confidence 56678899999999999998889999999888999999999997642210
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
....++.++|.. ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||+.|+++
T Consensus 52 ---------~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 52 ---------LELAKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ---------ccccCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 001356777765 899999999999999999999999999999 599999999999973
No 128
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.45 E-value=1.7e-12 Score=96.59 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=91.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.++..+||++ +++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP----------------------------- 52 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence 466789999999999999988888999999 78999999999997532110
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeC--CeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTG--SKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~vGivt~~Dil 272 (294)
......++.++|.+ .+.++.+++++.++++.|...+.+.+||+++ |+++|++|..|++
T Consensus 53 --------~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 53 --------SLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred --------cccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 00112568888876 8999999999999999999999999999986 8999999999997
No 129
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.45 E-value=4.6e-13 Score=123.36 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=111.4
Q ss_pred cEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHh-----CCCcEEEEEE-CCEEEEEEehH
Q 041090 93 LLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQ-----GKFRHLPVVE-NGEVIAILDIT 166 (294)
Q Consensus 93 ~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~vGivt~~ 166 (294)
++++.++..+- ..+..-..+.+.+++++|..++++++++.++.++++.|.+ .....++|+| +++++|+++.+
T Consensus 109 ~lL~~l~~~er--~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~ 186 (449)
T TIGR00400 109 QLLASSTEEER--KAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR 186 (449)
T ss_pred HHHHcCCHHHH--HHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence 45556666553 2233334566789999999999999999999999999975 3456788888 88999999999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHH
Q 041090 167 KCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKM 246 (294)
Q Consensus 167 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m 246 (294)
|++.. ....++.++|.+ ++.++.+++++.+|++.|
T Consensus 187 dLl~a-------------------------------------------~~~~~v~~im~~--~~~~v~~~~~~~eal~~m 221 (449)
T TIGR00400 187 DLILA-------------------------------------------KPEEILSSIMRS--SVFSIVGVNDQEEVARLI 221 (449)
T ss_pred HHhcC-------------------------------------------CCCCcHHHHhCC--CCeeECCCCCHHHHHHHH
Confidence 98631 012458889976 899999999999999999
Q ss_pred HHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090 247 REFRSNSALIVT-GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 247 ~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~ 277 (294)
.++++..+||+| +|+++|+||..|+++.+..
T Consensus 222 ~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 222 QKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred HHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999 7999999999999955544
No 130
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.45 E-value=9.8e-13 Score=125.07 Aligned_cols=122 Identities=11% Similarity=0.220 Sum_probs=102.9
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++|.++..++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+.....
T Consensus 446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~------------------- 506 (574)
T PRK01862 446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK------------------- 506 (574)
T ss_pred hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-------------------
Confidence 5689999998888999999999999999988999999999 78999999999997633210
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C--CeEeEeeehhHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G--SKIQGILTSKDV 271 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~--g~~vGivt~~Di 271 (294)
+.....++.++|.+ ++.++++++++.+++++|.+++.+.+||+| + ++++|+||++|+
T Consensus 507 ------------------~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DI 566 (574)
T PRK01862 507 ------------------RDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSL 566 (574)
T ss_pred ------------------cccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHH
Confidence 00012457788876 889999999999999999999999999998 4 589999999999
Q ss_pred HHHHH
Q 041090 272 LMRVV 276 (294)
Q Consensus 272 l~~~~ 276 (294)
++.+.
T Consensus 567 l~~l~ 571 (574)
T PRK01862 567 LDAYR 571 (574)
T ss_pred HHHHH
Confidence 96553
No 131
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.45 E-value=2.4e-12 Score=95.72 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=90.2
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.++.+++++.++++.|.+.+.+.++|+++++++|+++..+++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence 45678999999999999988888899999889999999999997533210 0
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
......++.++|.. .+.++.+++++.++++.|.+.+..++||++ +|+++|+||..|++
T Consensus 53 -------~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 53 -------LDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred -------CCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 00011457788866 888999999999999999999999999998 69999999999997
No 132
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=9.9e-13 Score=100.06 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=88.8
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
.+.++++++++.++++.|.++++..+||+| +|+++|+++..|++............ ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~------------------~~~-- 61 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLY------------------RTI-- 61 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcc------------------cch--
Confidence 456789999999999999988999999999 79999999999997643221000000 000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.+. ++... .....+.+.. ++.++.+++++.+|+++|.+++.+++||+| +|+++|+||..|++
T Consensus 62 -~~~-~~~~~--~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 62 -TFK-ELSEK--FTDSDGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred -hhh-hhhhh--cccccccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 000 00000 0112234544 789999999999999999999999999999 69999999999997
No 133
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.44 E-value=2e-12 Score=96.52 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=90.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC--CC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS--DS 134 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~~ 134 (294)
++.++.+++++.+|.+.|.+++.+.+||+|+ +|+++|+++..|++. . . . . ..++.++|...+..+.. ++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~-~-~-~--~-~~~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF-L-T-D--S-ETPLSEVMTPREVLVVAPTGI 76 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh-h-h-c--c-CCCHHHhcCCCceEEECCCCC
Confidence 5678899999999999999899999999997 789999999999852 2 1 1 1 34688999877777766 99
Q ss_pred cHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 135 LAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++.++++.|.+++...+||++ +|+++|++|..++++
T Consensus 77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 77 TLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999998 799999999999864
No 134
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.44 E-value=1.6e-12 Score=96.18 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=90.9
Q ss_pred CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC-CCcHH
Q 041090 59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS-DSLAI 137 (294)
Q Consensus 59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~ 137 (294)
+++..+.+++++.++++.|.+++...+||+|++|+++|+++.+|++.. .. ...++.++|...+..+.. ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-----~~-~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE-----TD-LDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec-----cc-CCCCHHHhcccCceEEecCCCCHH
Confidence 356789999999999999999999999999988999999999998521 11 245788888776666666 99999
Q ss_pred HHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090 138 EALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~ 170 (294)
++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999 799999999999874
No 135
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=3.3e-12 Score=99.57 Aligned_cols=110 Identities=26% Similarity=0.429 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC--C------------------------
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL--R------------------------ 113 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~--~------------------------ 113 (294)
+++++++++++.++++.|.+++++.+||+|+ ++++|+++..|+++.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999754432221 0
Q ss_pred -----CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 114 -----PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 114 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
....++.++|..++.++++++++.+++..|.+.+.+.+||+++++++|+++..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 023467788888899999999999999999999999999998889999999999864
No 136
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=3.4e-12 Score=94.88 Aligned_cols=109 Identities=25% Similarity=0.356 Sum_probs=90.2
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.++.+++++.++++.|.+.+.+.++|+++|+++|+++..+++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------- 52 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------- 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c-------
Confidence 56778999999999999998889999999989999999999986321110 0
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
......++.++|.. .+.++.+++++.++++.|.+.+.+++||++ +|+++|+|++.|++
T Consensus 53 -------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 -------RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred -------CCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 00111347888866 899999999999999999999999999998 69999999999997
No 137
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.8e-12 Score=96.82 Aligned_cols=112 Identities=14% Similarity=0.277 Sum_probs=89.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++++++++.++++.|.+.+++.+||++ +++++|+++..++++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~-------------------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL-------------------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence 467889999999999999988999999999 78999999999997643221000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
. ...+...++.++|.. .+.++.+++++.++++.|.+.+ .+||++ +|+++|+||+.|+++
T Consensus 56 -----~-~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 56 -----D-LERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred -----h-HHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 0 000123568888876 8999999999999999998754 599998 799999999999983
No 138
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.44 E-value=1.5e-12 Score=119.79 Aligned_cols=116 Identities=26% Similarity=0.388 Sum_probs=103.3
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCcccccccccc-cC
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-RN 126 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~ 126 (294)
.++++.|.++++++++++++.+|+++|.+++++.+||+|++ ++++|+++.+|++. .. . ...++.++|. .+
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-~~----~-~~~~V~dvm~~~~ 153 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-VK----D-KGKPVSEVMTREE 153 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-hh----c-CCCCHHHhhCCCC
Confidence 34677888899999999999999999999999999999987 79999999999963 21 1 2467999998 48
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
++++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++..
T Consensus 154 ~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 89999999999999999999999999999 89999999999999864
No 139
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.43 E-value=2.4e-12 Score=95.76 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=90.2
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++.+++++.++++.|.+.+...++|++ +|+++|+++..++++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------- 54 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------- 54 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence 455678999999999999888888999998 789999999999876433210
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....++.++|.. .+.++.+++++.+++++|...+...+||++ +|+++|+|+..||+
T Consensus 55 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 55 ---------DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred ---------ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence 0111357888866 788999999999999999999999999998 89999999999997
No 140
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=5.1e-12 Score=96.32 Aligned_cols=121 Identities=30% Similarity=0.392 Sum_probs=92.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++..+.++.++.+++++|.+.+.+.+||++ +++++|+++..|++..............
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~--------------------- 60 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD--------------------- 60 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhh---------------------
Confidence 456789999999999999999999999999 7999999999999764322110000000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee---CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT---GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~g~~vGivt~~Dil 272 (294)
...-.......++.++|.. +++++.+++++.++++.|.+.+...+||++ +|+++|+||+.|++
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 61 ---RSGEKERMLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred ---hhhhhhhhccCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 0000011233568888876 899999999999999999999999999985 49999999999997
No 141
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.43 E-value=1.6e-12 Score=110.87 Aligned_cols=117 Identities=22% Similarity=0.297 Sum_probs=107.1
Q ss_pred cchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 51 RTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 51 ~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
+.|.|+|.| +..++.+++++++-.++-.+++++.+||+|...+++|++|-+|+.. .....++..+|.++|+
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~-------~~~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD-------KKPSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhc-------CCCCccHHHHhccCCe
Confidence 568999995 8889999999999999999999999999999999999999999973 2336789999999999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++.+.+++..+.+.|.-.++..+||++ +.+++|+||+.|+++.+..
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999987654
No 142
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3e-12 Score=96.59 Aligned_cols=117 Identities=24% Similarity=0.376 Sum_probs=92.7
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..++++......... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~-~~---------------------- 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN-GE---------------------- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc-cc----------------------
Confidence 466789999999999999999999999999 699999999999976433210000 00
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.. .......++.++|.. ++.++.+++++.+++++|.+.+.+.+||++ +|+++|+||..|++
T Consensus 59 -~~----~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 59 -ES----LTKERDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred -cc----cccccCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 00 011123567888866 899999999999999999999999999999 58999999999997
No 143
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2e-12 Score=98.45 Aligned_cols=115 Identities=21% Similarity=0.333 Sum_probs=87.1
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++..++++.++++.|.+.+.+.++|++ +|+++|+++..|+......+.... +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------~------ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQE------------------G------ 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHH------------------c------
Confidence 456789999999999999888888999999 789999999999875321100000 0
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeE--e----CCCCcHHHHHHHHHHhCCceeEEee-C-CeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAI--V----SPSDPVAVAAKKMREFRSNSALIVT-G-SKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~--v----~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~vGivt~~Dil~ 273 (294)
.......++.++|.+ ++.. + .+++++.+++++|.+++.+.+||+| + |+++|+||+.|+++
T Consensus 58 -------~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 58 -------GISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred -------CCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 000122457788865 4433 3 3689999999999999999999999 5 79999999999974
No 144
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.42 E-value=4.3e-12 Score=93.94 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=89.6
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
+++.+.+++++.++++.|.+.+...+||+++++++|+++..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~------------------------------ 51 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEG------------------------------ 51 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcC------------------------------
Confidence 56778999999999999998888899999889999999999987532110
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
......+.++|.. ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus 52 --------~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 52 --------REATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred --------cccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0000245677766 899999999999999999999999999999 59999999999997
No 145
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.4e-12 Score=97.15 Aligned_cols=118 Identities=25% Similarity=0.393 Sum_probs=92.3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..+++......... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------~~ 57 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------ED 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc------------------------cc
Confidence 467789999999999999988889999999 79999999999997532110000 00
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
..........++.++|.. ++..+.+++++.++++.|.+.+.+.+||++ +|+++|++|+.|+++
T Consensus 58 ----~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 58 ----QQRTQTKASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ----hhhhhhhccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 000011223567788866 899999999999999999999999999998 699999999999983
No 146
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.6e-12 Score=95.13 Aligned_cols=118 Identities=27% Similarity=0.337 Sum_probs=92.1
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.++++++++.++++.|.+.+++.+||+++|+++|+++..++++.............
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~---------------------- 59 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETE---------------------- 59 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchH----------------------
Confidence 4567899999999999999889999999998899999999999865432110000000
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
... .....++.++|.. +++.+.+++++.++++.|.+.+...+||++ +|+++|++|+.|++
T Consensus 60 ---~~~--~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 60 ---KDL--ATLNRRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred ---HHH--HHHHhHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 000 0112347788866 899999999999999999999999999998 69999999999998
No 147
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.42 E-value=3e-12 Score=118.64 Aligned_cols=114 Identities=23% Similarity=0.204 Sum_probs=100.4
Q ss_pred ccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC--CeE
Q 041090 55 KLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN--PIF 129 (294)
Q Consensus 55 dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~ 129 (294)
..|.++++++.+++|+.+|+++|.+++++.+||+|+ +++++|++|.+|+. ... ....++.++|.++ +++
T Consensus 104 ~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvt 177 (505)
T PLN02274 104 VGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVT 177 (505)
T ss_pred ccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEE
Confidence 346789999999999999999999999999999997 48999999999995 221 2356899999866 779
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
+.+++++.++++.|.+++.+.+||+| +++++|+||+.|+++....
T Consensus 178 v~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 178 APAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999999999999 8999999999999987654
No 148
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=7.4e-12 Score=92.09 Aligned_cols=104 Identities=25% Similarity=0.434 Sum_probs=90.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA 139 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 139 (294)
++.++.++.++.+++..|.+.+++.+||++++++++|+++..++++. ....++.++|..++.++..++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc-------cccchHHHHhcCCCceECCCCCHHHH
Confidence 46788999999999999999899999999988999999999999631 11245777787888889999999999
Q ss_pred HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++.|.+.+.+.+||+++|+++|+++..++++
T Consensus 75 ~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVDDGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 9999999999999999779999999998864
No 149
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.7e-12 Score=93.72 Aligned_cols=104 Identities=22% Similarity=0.355 Sum_probs=89.1
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++++.+.++.++++.|.+.+...++|+++++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 45677899999999999998888888999888899999999998631
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
....++.++|.. .+.++.+++++.++++.|.+++.+.+||++ +|+++|+|+..|+++
T Consensus 49 ----------~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 49 ----------DPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ----------CccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 012357788865 789999999999999999999999999998 789999999999983
No 150
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.41 E-value=3.2e-12 Score=96.14 Aligned_cols=119 Identities=30% Similarity=0.371 Sum_probs=92.5
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.++.++.++.++++.|.+.++..+||+++|+++|+++..+++.......... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~---------------------~~~-- 58 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL---------------------DIW-- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc---------------------cch--
Confidence 456789999999999999988889999999889999999999976432110000 000
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.........++.++|.. ++.++.+++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus 59 ----~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 59 ----ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ----hhhhhhcccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 00000112457788866 899999999999999999999999999999 599999999999983
No 151
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=2.2e-12 Score=119.25 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
.++++++++++.++++.|.++++..+||+|+ ++++|+||..|+...
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------------------ 155 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------------------ 155 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc------------------------------
Confidence 4468999999999999999999999999984 799999999998421
Q ss_pred CChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
......++.++|....+++++.+++++.+|+++|.++++..+||+| +|+++|+||++|+++.
T Consensus 156 -----------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 156 -----------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -----------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 0012356899997544789999999999999999999999999999 7999999999999954
No 152
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.40 E-value=7.5e-12 Score=92.75 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=87.2
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
++.+++++.++.++.+.|.+.+...++|++ + |+++|+++..++++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 456789999999999999988889999998 6 8999999999997643210
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
....++.+++ . ++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.|++
T Consensus 54 -----------~~~~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 0002345555 3 578899999999999999999999999999 69999999999997
No 153
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.40 E-value=3.2e-12 Score=118.37 Aligned_cols=114 Identities=23% Similarity=0.300 Sum_probs=100.9
Q ss_pred hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CC
Q 041090 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NP 127 (294)
Q Consensus 53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~ 127 (294)
..+.|..+++++++++|+.+|+++|.+++++.+||+|++ ++++|+++.+|+. .. .....++.++|.+ ++
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-~~-----~~~~~~V~diMt~~~~l 171 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-FV-----KDKSTPVSEVMTPREKL 171 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-hc-----ccCCCCHHHhhCCcCCc
Confidence 556778899999999999999999999999999999973 8999999999995 21 1225679999987 78
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
+++.+++++.+++++|.+++.+.+||+| +++++|+||..|+++..
T Consensus 172 vtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 172 VVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 8999999999999999999999999999 89999999999999764
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=6.2e-12 Score=116.87 Aligned_cols=132 Identities=21% Similarity=0.310 Sum_probs=108.5
Q ss_pred cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195 (294)
Q Consensus 117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (294)
+.++++|..+++++++++++.++++.|.+++++.+||++ +++++|+++..|+....
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~----------------------- 143 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET----------------------- 143 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc-----------------------
Confidence 346678888999999999999999999999999999999 89999999999985310
Q ss_pred hhCCCCCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 196 QWGSNFSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
....++.++|. + +++++.+++++.++++.|.+++++.+||+| +|+++|+||.+||++
T Consensus 144 -------------------~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~ 202 (486)
T PRK05567 144 -------------------DLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202 (486)
T ss_pred -------------------cCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhh
Confidence 12245788886 4 899999999999999999999999999999 899999999999996
Q ss_pred HHHHccC---CCCcceeeeccc
Q 041090 274 RVVAQNL---SPELTLVERFIM 292 (294)
Q Consensus 274 ~~~~~~~---~~~~~~v~~~~~ 292 (294)
.+...+. ....+.|...|.
T Consensus 203 ~~~~p~a~~d~~g~l~V~aai~ 224 (486)
T PRK05567 203 AEEFPNACKDEQGRLRVGAAVG 224 (486)
T ss_pred hhhCCCcccccCCCEEEEeecc
Confidence 6544332 123456666664
No 155
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.39 E-value=1.1e-11 Score=93.18 Aligned_cols=118 Identities=31% Similarity=0.412 Sum_probs=92.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++++++++.++++.|.+.++..+||++ +++++|+++..++............
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------ 57 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS------------------------ 57 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch------------------------
Confidence 456789999999999999888888999999 7999999999998754321100000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
.... ......++.++|.. .+.++.+++++.++++.|.+.+...+||+++|+++|+++..|+++
T Consensus 58 ---~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 58 ---EHEL-YLLLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred ---hhhh-hhhcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 0000 01223557888866 899999999999999999999999999998899999999999973
No 156
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.39 E-value=1.4e-11 Score=92.03 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=93.8
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS 202 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 202 (294)
+...++++.++.++.++...|.++++..+||++.++++|++|..|+++.......
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~------------------------- 59 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK------------------------- 59 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC-------------------------
Confidence 3367889999999999999999999999999997799999999999876543100
Q ss_pred ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHH-hCCceeEEee-CC-eEeEeeehhHHH
Q 041090 203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMRE-FRSNSALIVT-GS-KIQGILTSKDVL 272 (294)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd-~g-~~vGivt~~Dil 272 (294)
...++.++|.. ++.++.++.++.++.++|.+ ++++.+||++ ++ +++|++|+.|++
T Consensus 60 -------------~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 60 -------------RLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -------------ccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 00157888876 89999999999999999999 6999999999 54 999999999974
No 157
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.38 E-value=6.2e-12 Score=115.23 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=108.7
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
+..+.+|+++|++ ++.+++.+.++.++++.+.+++++.+||++ +.+.++|+++.+|++.+...... ........
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~ 278 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV 278 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc
Confidence 5688999999999 889999999999999999999999999999 45789999999999876544322 11122222
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKA 179 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~ 179 (294)
.+++.+++..++.++++.|++.+.|...|+| .|.+.|+||..|+++.....+...
T Consensus 279 -~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de 334 (429)
T COG1253 279 -RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDE 334 (429)
T ss_pred -cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCc
Confidence 3888999999999999999999999999999 899999999999999887754433
No 158
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.38 E-value=1.2e-11 Score=92.39 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=85.7
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
++.++.+++++.++++.|.+.+...++|+|+ |+++|+++..|++.. .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--~--------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--T--------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--h---------------------------
Confidence 5667889999999999998888889999983 799999999887531 0
Q ss_pred CChhhhHHHHHHhhcccchhhhhhcCCceeEeCC--CCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSP--SDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
....++.++|.. .+.++.. ++++.++++.|.+.+...+||++ +|+++|+||++|++
T Consensus 54 -------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 -------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 011347788865 6666655 99999999999999999999998 79999999999997
No 159
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.37 E-value=7.6e-12 Score=115.11 Aligned_cols=115 Identities=20% Similarity=0.332 Sum_probs=98.9
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV 193 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 193 (294)
...+.+.+++++++++.++.++++.|.+++++++||++ + ++++|+++..|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 45566777899999999999999999999999999999 5 6999999999986310
Q ss_pred HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
....++.++|.+ .+++++.+++++.++++.|.+++.+.+||+| +|+++|+||++||+
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 013468888861 2799999999999999999999999999999 79999999999999
Q ss_pred HHH
Q 041090 273 MRV 275 (294)
Q Consensus 273 ~~~ 275 (294)
+..
T Consensus 198 ~~~ 200 (450)
T TIGR01302 198 KRR 200 (450)
T ss_pred hcc
Confidence 654
No 160
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=8.9e-12 Score=92.07 Aligned_cols=105 Identities=24% Similarity=0.418 Sum_probs=87.3
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+++..+..+.++.++++.|.+.+...++|++ +|+++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 3567789999999999999888888999999 78999999998875210
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCC-CCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSP-SDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
....++.++|.. .+..+.+ ++++.++++.|.+.+.+.+||++ +|+++|+||.+|+++
T Consensus 51 -----------~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 51 -----------DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred -----------cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 012457778755 5666666 99999999999999999999998 799999999999973
No 161
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=3.7e-12 Score=94.24 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=83.2
Q ss_pred EcCCCcHHHHHHHHHhCC-----CcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090 130 VTSDSLAIEALQKMVQGK-----FRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA 203 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 203 (294)
+.+++++.++++.|.+.+ +..+||++ +++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------- 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------- 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 467889999999998766 46788998 78999999988885310
Q ss_pred hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
...++.+++.. ++..+.+++++.++++.|...+...+||++ +|+++|+||..|+++
T Consensus 51 ------------~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 51 ------------PDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred ------------CcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 11346777755 789999999999999999999999999998 799999999999984
No 162
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.36 E-value=1.7e-11 Score=90.43 Aligned_cols=106 Identities=25% Similarity=0.448 Sum_probs=85.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY 205 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 205 (294)
++.++.+++++.++++.|.+.+++.+||+++++++|+++..++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK----------------------------- 52 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccc-----------------------------
Confidence 456789999999999999988999999999889999999999876432200
Q ss_pred hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....++.++|.. ++.++++++++.+++++|.+ .. .+||++ +|+++|+||++|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 53 --------AKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred --------cccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 0012457778865 78999999999999999887 43 478887 79999999999997
No 163
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.1e-11 Score=93.01 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=88.8
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHc--CCCCcccccccccccCCeEEcCCCcH
Q 041090 60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAE--GLRPDQTVVSKIMTRNPIFVTSDSLA 136 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~--~~~~~~~~v~~~~~~~~~~v~~~~~l 136 (294)
+++++.+++++.+|.+.|...+ ++.+||+|+ |+++|+++..|+++.+... .......++.++|..++..+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 4667899999999999998876 899999998 9999999999997433211 00112457889998888999999999
Q ss_pred HHHHHHHHhCCCc---EEEEEE-CCEEEEEEehHHHHH
Q 041090 137 IEALQKMVQGKFR---HLPVVE-NGEVIAILDITKCLY 170 (294)
Q Consensus 137 ~~~~~~~~~~~~~---~~~V~~-~~~~vGivt~~dll~ 170 (294)
.++++.|.+.+.. ..+|++ +|+++|+++..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999877643 335776 899999999999864
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.36 E-value=9.4e-12 Score=115.28 Aligned_cols=117 Identities=13% Similarity=0.202 Sum_probs=99.1
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV 193 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 193 (294)
..++.+..+++++++++++.+++++|.+.++..+||+++ ++++|+++..|+... .
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~------------------- 155 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K------------------- 155 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c-------------------
Confidence 445567788899999999999999999999999999984 799999999998521 0
Q ss_pred HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
....++.++|.+..+++++.+++++.+++++|.++++..+||+| +++++|+||++||+
T Consensus 156 ---------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl 214 (495)
T PTZ00314 156 ---------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK 214 (495)
T ss_pred ---------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence 11356889995434789999999999999999999999999999 79999999999999
Q ss_pred HHHH
Q 041090 273 MRVV 276 (294)
Q Consensus 273 ~~~~ 276 (294)
+...
T Consensus 215 ~~~~ 218 (495)
T PTZ00314 215 KNRG 218 (495)
T ss_pred hccc
Confidence 5543
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.36 E-value=1.4e-11 Score=114.22 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=98.0
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 198 (294)
|.++++++++++++.++++.|.++++..+||+++ ++++|+||..|+....
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-------------------------- 159 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-------------------------- 159 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------------------------
Confidence 5688999999999999999999999999999984 7999999999985310
Q ss_pred CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~ 277 (294)
....++.++|.+..+++++.+++++.+|+++|.++++..+||+| +++++|+||++||++....
T Consensus 160 ----------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 160 ----------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ----------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 12356889997622388999999999999999999999999998 8999999999999966655
Q ss_pred c
Q 041090 278 Q 278 (294)
Q Consensus 278 ~ 278 (294)
.
T Consensus 224 p 224 (505)
T PLN02274 224 P 224 (505)
T ss_pred c
Confidence 3
No 166
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.35 E-value=7.5e-12 Score=107.98 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=95.0
Q ss_pred cccccccccC-CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 117 TVVSKIMTRN-PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 117 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
.+++++|.++ +.++.+++++.++++.|.+.+++.++|+| +|+++|+++..|+.+....
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 5788999888 88899999999999999988899999999 8999999999999753211
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
......++.++|.+ ++.++.+++++.+|+++|.+.+...+||+| +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 00123568899976 899999999999999999999999999998 689999985
No 167
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=3e-11 Score=94.09 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=94.7
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHH-HHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRME-KAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
+++++++++++.++++.|.+.++..+||+++++++|+++..++++.+..... ................ ..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 76 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPL-----REFINW 76 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccc-----hheeeh
Confidence 5678899999999999999889999999988899999999999765432110 0000000000000000 000000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
........+ ....++.++|.. .+.++.+++++.+++..|.+.+...+||+++|+++|+|+..|++
T Consensus 77 ~~~~~~~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 77 EETKRALTD-AGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred HHHHHHHHH-HhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 001111111 123467888866 89999999999999999999999999999889999999999997
No 168
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.5e-11 Score=89.21 Aligned_cols=102 Identities=29% Similarity=0.403 Sum_probs=86.4
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++..+.++.+++..|.+.++..++|++ +++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 456778888999999999888888999998 78999999999986310
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
...++.++|.. ++.++.+++++.++++.|.+.+.+.+||+++|+++|+||..|++
T Consensus 50 -----------~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 00235666755 78999999999999999999999999999988999999999997
No 169
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.34 E-value=2.4e-11 Score=89.47 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=83.5
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS 202 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 202 (294)
...+.+++++.++.+.+.+.+...+||+++ |+++|+++..++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~----------------------------- 54 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK----------------------------- 54 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------------
Confidence 456789999999999998888888999984 88999999999864311
Q ss_pred ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.+|.. ++.++++++++.++++.|.+++.+.+||+++|+++|+||++|++
T Consensus 55 -------------------~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 55 -------------------NYIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred -------------------HhccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 05544 78899999999999999999999999999999999999999997
No 170
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.34 E-value=4.7e-11 Score=106.96 Aligned_cols=196 Identities=20% Similarity=0.198 Sum_probs=145.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCC-C--------------ccccc----
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLR-P--------------DQTVV---- 119 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~-~--------------~~~~v---- 119 (294)
+..+++...++.+|+..+..++++..|+.+. ..++.|+++..|+...+...... . ....+
T Consensus 77 ~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (381)
T KOG1764|consen 77 KLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLL 156 (381)
T ss_pred eeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhh
Confidence 7889999999999999999999999999986 46889999999987555432211 0 00011
Q ss_pred ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW 197 (294)
Q Consensus 120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (294)
+....++++.+.+..++.++...+.+++++++||.| .+++..++|...+++++.......
T Consensus 157 ~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~------------------ 218 (381)
T KOG1764|consen 157 KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL------------------ 218 (381)
T ss_pred ccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc------------------
Confidence 111122337788888999999999999999999998 689999999999998766532211
Q ss_pred CCCCCChhhhHHHHHHhhcccchhhhhhcCC-ceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 198 GSNFSAPYAFIETLRERMFKPSLSTIITENA-KVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
. ...+...++.++-.... ++..+..++++.+|+++|.+++++++||++ .|+.+|++++.|+....
T Consensus 219 ----~---------~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 219 ----P---------LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred ----c---------cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence 1 01122233444332222 588999999999999999999999999999 77779999999999655
Q ss_pred HHccCCCCcce
Q 041090 276 VAQNLSPELTL 286 (294)
Q Consensus 276 ~~~~~~~~~~~ 286 (294)
.....+....+
T Consensus 286 ~~~~~~~~~~~ 296 (381)
T KOG1764|consen 286 REGTYNNLDLS 296 (381)
T ss_pred hcCccCccchh
Confidence 55555555444
No 171
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.32 E-value=2.6e-11 Score=112.43 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=97.2
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
+...+++++|.+++.++.+++++.++++.|.+.++..+||+| +++++|+|+..|+++.....
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 345678999988999999999999999999988899999999 78999999999997643220
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
......++.++|.. ++.++++++++.+++++|.+.+ ..+|+++|+++|+||+.|++
T Consensus 395 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 00112458888866 8889999999999999998753 34455589999999999999
Q ss_pred HH
Q 041090 273 MR 274 (294)
Q Consensus 273 ~~ 274 (294)
+.
T Consensus 451 ~~ 452 (454)
T TIGR01137 451 SF 452 (454)
T ss_pred Hh
Confidence 54
No 172
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.32 E-value=5.3e-11 Score=87.64 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=88.8
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.+++.++++.++.+.|.+.+...+||++ +++++|+++..+++........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL--------------------------- 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC---------------------------
Confidence 456788999999999999988888999999 6899999999999765432100
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.....+.++|.. ++..+.+++++.+++..|.+.+.+.+||++ +|+++|+++..|++
T Consensus 55 ----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 55 ----------DPLVTVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred ----------CccccHHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 000114566755 889999999999999999999999999999 69999999999997
No 173
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.31 E-value=5.7e-12 Score=101.92 Aligned_cols=131 Identities=11% Similarity=0.214 Sum_probs=112.6
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
+..+++|+|+|.+ ..++++.+.++.+.+..+.+..++.+||+.+ ...+.|++..+||++++.... ....+.+++
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---~~F~i~~lL 139 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---EPFDIKELL 139 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---ccccHHHhc
Confidence 3567899999999 7899999999999999999999999999976 467999999999997653322 235677776
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHh
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAE 181 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~ 181 (294)
++.+.++++..+...++-|+.++.|...|+| .|.+-|.||.+|+++.+...++..+.
T Consensus 140 -RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~D 197 (293)
T COG4535 140 -RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYD 197 (293)
T ss_pred -ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccc
Confidence 5778899999999999999999999999999 88899999999999999887777653
No 174
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.31 E-value=2.9e-11 Score=93.01 Aligned_cols=96 Identities=25% Similarity=0.293 Sum_probs=78.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc----------ccccccc------
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ----------TVVSKIM------ 123 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~----------~~v~~~~------ 123 (294)
++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++++......... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 567899999999999999999999999999999999999999998766433221100 1123344
Q ss_pred ---ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE
Q 041090 124 ---TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE 155 (294)
Q Consensus 124 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 155 (294)
..+++++.+++++.++++.|.+++++.+||++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 45688999999999999999999999999998
No 175
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.1e-10 Score=87.64 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++++++++.++++.|...+ ++.++|+++|+++|+++..+++........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYG--------------------------- 54 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhh---------------------------
Confidence 4556889999999999998776 789999988899999999998754321100
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCc---eeEEee-CCeEeEeeehhHHHH
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSN---SALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.......++.++|.. .+.++.+++++.+++..|.+++.. ..+|++ +|+++|+||..|+++
T Consensus 55 -------~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 55 -------RALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred -------HHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 011123458888866 899999999999999999988753 346776 899999999999973
No 176
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.9e-11 Score=103.48 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
|..+++|+|+|.+ ++..++.+++.++.++.+.+..+..+|++.++ +.++|+++.+|+++.+.++.. .....+..+.
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a 274 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAA 274 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-ccHhHHHHHh
Confidence 7789999999999 88999999999999999999999999999763 569999999999876655443 3344444444
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRME 177 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~ 177 (294)
.+|.++++++++.+-+..|.+++-|...|+| .|.+.|+||.+|+++.....+.
T Consensus 275 -~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 275 -DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred -cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 4677899999999999999998888888999 9999999999999998887655
No 177
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.24 E-value=4e-11 Score=77.94 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=52.4
Q ss_pred hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 041090 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV 107 (294)
Q Consensus 53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~ 107 (294)
|+++|.++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+||++++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 6799999999999999999999999999999999999999999999999998655
No 178
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.4e-10 Score=105.30 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=109.6
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 121 (294)
.|.+-+++.+|+.+.++++++.|+.+|+..+++. .+..+.|+|.++++.|+++.++++. ...+.++++
T Consensus 128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~-------a~~~~~i~~ 200 (451)
T COG2239 128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT-------AEPDELLKD 200 (451)
T ss_pred CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc-------CCcHhHHHH
Confidence 4677788999999999999999999999999953 4678999999999999999999972 334789999
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
+|.+.++.+.+++..+++.+.|.+++.-.+||+| +++++|++|..|++.-....
T Consensus 201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999999998766553
No 179
>PRK11573 hypothetical protein; Provisional
Probab=99.22 E-value=1.5e-10 Score=105.30 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=106.6
Q ss_pred HcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhch
Q 041090 109 AEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGS 184 (294)
Q Consensus 109 ~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~ 184 (294)
.+-.+..+.+++++|.+ ++++++.++++.++++.+.+++++++||++ .+.++|++..+|++......
T Consensus 179 ~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--------- 249 (413)
T PRK11573 179 LSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--------- 249 (413)
T ss_pred HHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc---------
Confidence 34456778899999975 678899999999999999999999999998 37899999999998532210
Q ss_pred hHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEe
Q 041090 185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQ 263 (294)
Q Consensus 185 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~v 263 (294)
.. .....+.+++ +++..|+++.++.++++.|.+++.+-..|+| .|..+
T Consensus 250 --------------~~--------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~ 298 (413)
T PRK11573 250 --------------KE--------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQ 298 (413)
T ss_pred --------------Cc--------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeE
Confidence 00 0001122333 2688999999999999999999999999999 69999
Q ss_pred EeeehhHHHHHHHHccCCC
Q 041090 264 GILTSKDVLMRVVAQNLSP 282 (294)
Q Consensus 264 Givt~~Dil~~~~~~~~~~ 282 (294)
|+||..||+..++.+-.+.
T Consensus 299 GiVTleDilEeivGei~de 317 (413)
T PRK11573 299 GLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred EEeeHHHHHHHHhCCCCcc
Confidence 9999999999999765543
No 180
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.20 E-value=3.3e-10 Score=103.89 Aligned_cols=145 Identities=17% Similarity=0.314 Sum_probs=116.7
Q ss_pred EEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHH
Q 041090 95 SGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLY 170 (294)
Q Consensus 95 ~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~ 170 (294)
.|++...+- .++.+-....+..++++|.+ +..+++.+.++.++.+.+.+.+++++||++ .+.++|+++.+|++.
T Consensus 186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 577777763 55666667888999999975 567888999999999999999999999999 578999999999998
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhC
Q 041090 171 DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFR 250 (294)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~ 250 (294)
+...... .......+ . +++.++++.++.++++.|.+.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~-~--~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV-R--PPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc-c--CCeEecCCCcHHHHHHHHHHhC
Confidence 6544100 00111111 1 6899999999999999999999
Q ss_pred CceeEEee-CCeEeEeeehhHHHHHHHHccCCCC
Q 041090 251 SNSALIVT-GSKIQGILTSKDVLMRVVAQNLSPE 283 (294)
Q Consensus 251 ~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~~ 283 (294)
.|-..|+| .|.+.|+||..||+..++.+-.+..
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 99999999 6999999999999999888655443
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.4e-10 Score=105.24 Aligned_cols=127 Identities=19% Similarity=0.315 Sum_probs=108.6
Q ss_pred HHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHh-----CCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHH
Q 041090 107 VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQ-----GKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAA 180 (294)
Q Consensus 107 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~ 180 (294)
.+....++.+..++.+|....+.++++.|+.+++..+++ ..+..++|+| +++++|+++.++++....
T Consensus 122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~------- 194 (451)
T COG2239 122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP------- 194 (451)
T ss_pred HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc-------
Confidence 334456677889999999999999999999999999884 3467889999 889999999999975322
Q ss_pred hhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C
Q 041090 181 EQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G 259 (294)
Q Consensus 181 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~ 259 (294)
...+.++|.+ .+.++.+++..+++++++.++++-.+|||| +
T Consensus 195 ------------------------------------~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~ 236 (451)
T COG2239 195 ------------------------------------DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED 236 (451)
T ss_pred ------------------------------------HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC
Confidence 1458899977 799999999999999999999999999999 8
Q ss_pred CeEeEeeehhHHHHHHHHcc
Q 041090 260 SKIQGILTSKDVLMRVVAQN 279 (294)
Q Consensus 260 g~~vGivt~~Dil~~~~~~~ 279 (294)
++++|+||..|++ ..+.+.
T Consensus 237 ~~LiG~itiDDii-dvi~eE 255 (451)
T COG2239 237 NRLIGIITIDDII-DVIEEE 255 (451)
T ss_pred CceeeeeeHHHHH-HHHHHH
Confidence 8999999999999 555443
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.08 E-value=1.9e-09 Score=82.92 Aligned_cols=114 Identities=16% Similarity=0.043 Sum_probs=75.9
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP 204 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 204 (294)
++.++.+++++.++++.|.+.+++.+||+| +|+++|+++..|++++.......... ... .-++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~----~~~------~~~~~~---- 67 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ----PED------ETKQTN---- 67 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc----cch------hhcccc----
Confidence 467889999999999999988999999999 79999999999998765331000000 000 000000
Q ss_pred hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090 205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258 (294)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (294)
...+.+.+....+.+.|.. +++++.+++++.+|+++|.+++++.+||++
T Consensus 68 ---~~~v~~i~~~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 68 ---TCLVSSVCTKGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred ---cccHHHHhhhhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 0000000000011222334 789999999999999999999999999998
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.04 E-value=9.9e-10 Score=71.25 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=49.9
Q ss_pred hhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 220 LSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 220 v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
+.++|.+ ++.++++++++.++++.|.+++++++||+| +|+++|+||.+||++.+
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4678877 999999999999999999999999999998 89999999999999654
No 184
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=7.1e-08 Score=87.37 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=93.9
Q ss_pred cccccccccCCe---EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 117 TVVSKIMTRNPI---FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 117 ~~v~~~~~~~~~---~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
.++.++|...+. ...++....+++..|...+.+.++|+| +++++|+++..++......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------------ 335 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ------------------ 335 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc------------------
Confidence 345566543221 233566789999999999999999999 8999999999998543211
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
...+.+.+.. ...++.+++++.+++..|.+.... +||+| +|+++|+||+.++
T Consensus 336 ------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~ 388 (400)
T PRK10070 336 ------------------------QQGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGML 388 (400)
T ss_pred ------------------------CCchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHH
Confidence 1235555644 688999999999999999987665 99999 8999999999999
Q ss_pred HHHHHHccCCC
Q 041090 272 LMRVVAQNLSP 282 (294)
Q Consensus 272 l~~~~~~~~~~ 282 (294)
++.+...+.+.
T Consensus 389 ~~~~~~~~~~~ 399 (400)
T PRK10070 389 LRALDREGVNN 399 (400)
T ss_pred HHHHHhcCCCC
Confidence 98888777653
No 185
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.2e-09 Score=97.10 Aligned_cols=164 Identities=16% Similarity=0.157 Sum_probs=119.5
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--C----CEEEEEEehHHHHHHHHHHHHHHHhh-chhHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--N----GEVIAILDITKCLYDAISRMEKAAEQ-GSAIAA 188 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~----~~~vGivt~~dll~~~~~~~~~~~~~-~~~~~~ 188 (294)
...++++|.++.+++..-+.+..+.+.+++..++.+||+| . +++.|+|-++.++..+.++....... ......
T Consensus 581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~ 660 (762)
T KOG0474|consen 581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPV 660 (762)
T ss_pred hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcch
Confidence 4578999999999999999999999999999999999998 2 36889998888877665554432210 000110
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
......+..........+..-+..+...-.++..+|++ .++++.+++++..+..++++-+++++.|++ .+.++|++|
T Consensus 661 ~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilT 738 (762)
T KOG0474|consen 661 RRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILT 738 (762)
T ss_pred hhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEe
Confidence 11111122223444444444445555566789999977 999999999999999999999999999999 778899999
Q ss_pred hhHHHHHHHHccCCC
Q 041090 268 SKDVLMRVVAQNLSP 282 (294)
Q Consensus 268 ~~Dil~~~~~~~~~~ 282 (294)
++|++ +.-..++.|
T Consensus 739 R~D~~-~~~~l~~~~ 752 (762)
T KOG0474|consen 739 RKDLA-RYRILGLEP 752 (762)
T ss_pred hhhhh-hHHHhcccc
Confidence 99998 444555543
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.87 E-value=2.3e-07 Score=83.04 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=104.0
Q ss_pred CEEEEEcCCCcEEEEEeHHHHHHH--------HHHcCCCCccccccc---ccccCCeEEcCCCcHHHHHHHHHhCCCcEE
Q 041090 83 DAVLLTDANALLSGIVTDKDITTR--------VIAEGLRPDQTVVSK---IMTRNPIFVTSDSLAIEALQKMVQGKFRHL 151 (294)
Q Consensus 83 ~~lpV~d~~~~~~Givt~~di~~~--------~~~~~~~~~~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~ 151 (294)
+.+.+++ +|+++..-+..+++.. ++............. .+........++.+..++++.|...+...+
T Consensus 198 drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (363)
T TIGR01186 198 DRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSL 276 (363)
T ss_pred CEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceE
Confidence 4555554 6888888888877532 111100000111222 222233345567788999999998888899
Q ss_pred EEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCce
Q 041090 152 PVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKV 230 (294)
Q Consensus 152 ~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~ 230 (294)
.|++ ++++.|+++..++..+... ...+.+.+.. ..
T Consensus 277 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~ 312 (363)
T TIGR01186 277 YVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLID--DI 312 (363)
T ss_pred EEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhcc--CC
Confidence 9999 8999999998887543211 1235566655 78
Q ss_pred eEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 231 AIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
.++.+++++.+++..|.+.+.. +||+| +|+++|+||+.++++.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 8999999999999999999987 99999 899999999999995554
No 187
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.83 E-value=8.2e-09 Score=90.08 Aligned_cols=106 Identities=26% Similarity=0.384 Sum_probs=94.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcH
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLA 136 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 136 (294)
+++++.|+.++.++++....+++..+||.++ .++++|+||.+|+ ..+ ......+.++|...+++.+.+.++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~~~~~~~gi~l 190 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKNPVTGAQGITL 190 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccccccccccccH
Confidence 6788999999999999999999999999975 4799999999999 344 223568899999988899999999
Q ss_pred HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
.++-+++.+.+...+||+| +|+++.++++.||.+.
T Consensus 191 ~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 191 KEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999999999999999 9999999999999764
No 188
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.78 E-value=4.9e-08 Score=84.65 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090 113 RPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188 (294)
Q Consensus 113 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~ 188 (294)
+.+..+|.|+|.+ ....++.+++.+++++.+....+.++|+.. -+.++|++..+|+++.+.+...
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----------- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----------- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence 4556789999964 566789999999999999999999999987 2569999999999987655211
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
.....+..+ ..+|+.+++.+++.+-+..|..++-+-..||| -|.+.|+||
T Consensus 265 --------------------------~~k~d~~~~---a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVT 315 (423)
T COG4536 265 --------------------------FTKEDILRA---ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVT 315 (423)
T ss_pred --------------------------ccHhHHHHH---hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeee
Confidence 000112222 23799999999999999999999999999999 699999999
Q ss_pred hhHHHHHHHHccCCCCcceeeec
Q 041090 268 SKDVLMRVVAQNLSPELTLVERF 290 (294)
Q Consensus 268 ~~Dil~~~~~~~~~~~~~~v~~~ 290 (294)
..||+..++.+-.+......+++
T Consensus 316 LEDIlEEIVGdftde~d~~~~ev 338 (423)
T COG4536 316 LEDILEEIVGDFTDEHDTLAKEV 338 (423)
T ss_pred HHHHHHHHhccccccCcccchhh
Confidence 99999999988775544444443
No 189
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.71 E-value=3.7e-07 Score=81.72 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=91.3
Q ss_pred cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHH
Q 041090 58 LSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAI 137 (294)
Q Consensus 58 ~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 137 (294)
........++.+..+++..|...+...+.|+|+++++.|.++.+++..+. .. ...+.+.+.....++.+++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~ 322 (363)
T TIGR01186 249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR-KK-----AQGLQDVLIDDIYTVDAGTLLR 322 (363)
T ss_pred cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh-hc-----CCchhhhhccCCceECCCCcHH
Confidence 33444566778899999999999999999999999999999999986433 22 2246666777778899999999
Q ss_pred HHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 138 EALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
+++..|.+.+.. +||+| +|+++|+|+..+++..+..
T Consensus 323 ~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 323 ETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999998888 99999 8999999999999887654
No 190
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3e-08 Score=90.90 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=102.9
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHHcC----------
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-----ALLSGIVTDKDITTRVIAEG---------- 111 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-----~~~~Givt~~di~~~~~~~~---------- 111 (294)
..++++++|+|.++++++..-+.+...++++.++.++.+||+|+. +++.|++-.+.++ .++.+.
T Consensus 578 ~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~~ 656 (762)
T KOG0474|consen 578 YMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRSTF 656 (762)
T ss_pred HhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcccc
Confidence 458899999999999999999999999999999999999999972 5788998887765 232211
Q ss_pred -----------------CCC-----------cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEE
Q 041090 112 -----------------LRP-----------DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAI 162 (294)
Q Consensus 112 -----------------~~~-----------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGi 162 (294)
... --..+..+|.+.|.++++++++..+..+|++-+.+++.|++ .+.++|+
T Consensus 657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 000 01245567778899999999999999999999999999999 7788999
Q ss_pred EehHHHHHHH
Q 041090 163 LDITKCLYDA 172 (294)
Q Consensus 163 vt~~dll~~~ 172 (294)
+|+.|+..+-
T Consensus 737 lTR~D~~~~~ 746 (762)
T KOG0474|consen 737 LTRKDLARYR 746 (762)
T ss_pred EehhhhhhHH
Confidence 9999998653
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=4.4e-07 Score=82.26 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=94.3
Q ss_pred cchhccccCCc---eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 51 RTVKKLRLSKA---LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 51 ~~v~dl~~~~~---~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.++.++|.+.. +...++.+..+|+..|...+.+.++|+|+++++.|+++.+++.+.. .+ ...+.+.+....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~~~~~~~ 347 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL-TQ-----QQGLDAALIDAP 347 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh-hc-----CCchhhhhccCC
Confidence 56677775422 2344677899999999999999999999999999999999996432 22 224666666777
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
.++.+++++.+++..+...... +||+| +|+++|+|+..+++..+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 8899999999999999987666 89999 8999999999999987644
No 192
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.4e-07 Score=81.12 Aligned_cols=105 Identities=14% Similarity=0.249 Sum_probs=91.2
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE----CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE----NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSN 200 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 200 (294)
.+|+++.++.++.++++....+++..+||.+ +++++|+||.+|+...
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 4677889999999999999999999999986 4689999999998432
Q ss_pred CCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 201 FSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
......+.++|.. ++++.....++.++-+++.+..-..+|||| +|+++.+|++.||++
T Consensus 167 -------------~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 167 -------------EDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred -------------hcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence 1123568899977 779999999999999999999999999999 899999999999983
No 193
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.51 E-value=7.7e-08 Score=78.28 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=124.8
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR- 125 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~- 125 (294)
.|-..-.+++.... -.+-++.+.++++...+.+ +....+ .+++......+..++++|.+
T Consensus 17 sffe~L~~~~f~gE------pknr~eLl~liRdse~n~L------------iD~dt~--~mlEGvm~iadl~vrDiMIPR 76 (293)
T COG4535 17 SFFERLLSQLFHGE------PKNREELLELIRDSEQNEL------------IDADTL--DMLEGVMDIADLRVRDIMIPR 76 (293)
T ss_pred cHHHHHHHHHhcCC------CcCHHHHHHHHHHhhhccc------------cChhHH--HHHHHHHHHHHhhHhhhcccH
Confidence 55555555553332 2457788888877554333 222221 22222233446678899865
Q ss_pred -CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090 126 -NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS 202 (294)
Q Consensus 126 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 202 (294)
..+++..+.++.+++..+.+...+++||+. .+.+.|++-.+||+.+....
T Consensus 77 SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~--------------------------- 129 (293)
T COG4535 77 SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD--------------------------- 129 (293)
T ss_pred HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC---------------------------
Confidence 567889999999999999999999999987 57899999999999864321
Q ss_pred ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccCC
Q 041090 203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLS 281 (294)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~ 281 (294)
.....+.++.. +.+.|+++..+...++-+...+.+...|+| -|-+-|+||..||+..+++.--+
T Consensus 130 ------------~~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIED 194 (293)
T COG4535 130 ------------AEPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIED 194 (293)
T ss_pred ------------cccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccc
Confidence 01123455542 588899999999999999999999999999 58899999999999877765443
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=3.9e-07 Score=67.86 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT 104 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~ 104 (294)
.+|+++|.+++..+.+++++.+|++.|.+++++.+||+|++|+++|+++.+||.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 679999999999999999999999999999999999999999999999999985
No 195
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.48 E-value=1.9e-07 Score=88.64 Aligned_cols=198 Identities=19% Similarity=0.226 Sum_probs=125.9
Q ss_pred hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC------------CcEEEEEeHHHHHHHHHHcCCCCcccccc
Q 041090 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN------------ALLSGIVTDKDITTRVIAEGLRPDQTVVS 120 (294)
Q Consensus 53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~------------~~~~Givt~~di~~~~~~~~~~~~~~~v~ 120 (294)
+.+.|.+.-+.+..+.+ +....+.+.+++.++|.... ..+.++.|..|....... ... ..+++
T Consensus 175 ~~~~~~~~~lvi~gdr~--d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~--l~~-~~~V~ 249 (546)
T PRK14869 175 LLERIEEGDIVIVGDRE--DIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARL--INQ-SIPVS 249 (546)
T ss_pred HHHhccCCCEEEEcCcH--HHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHH--hhc-CCCHH
Confidence 34445554333433322 33446778889999887643 258899999997644322 122 56899
Q ss_pred cccc-cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090 121 KIMT-RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198 (294)
Q Consensus 121 ~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 198 (294)
++|. ++++++++++++.++.+.|.+++++.+||+| +|+++|+++..|++.....+..= ..+. ...........
T Consensus 250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL-VD~~-e~~q~~~~~~~--- 324 (546)
T PRK14869 250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL-VDHN-EKSQAVEGIEE--- 324 (546)
T ss_pred HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE-EcCc-cccccccchhh---
Confidence 9999 8899999999999999999999999999999 89999999999998743221000 0000 00000000000
Q ss_pred CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEe---CCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIV---SPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
..+.+..-..++.+++.. .++.+ +...+.+.+.++|.+.++...|++....+.||+|-++.+
T Consensus 325 ----------~~i~~iiDHH~~~~~~~~--~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsDT~~f 389 (546)
T PRK14869 325 ----------AEILEIIDHHRLGDIQTS--NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSDTLLF 389 (546)
T ss_pred ----------ceEEEEecCCccCCCCCC--CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCc
Confidence 000111122345566654 44433 446677788899999998888877666677888877766
No 196
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=9.7e-06 Score=69.55 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=108.0
Q ss_pred cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH--------HHHHcCCCCcccccccccccC--C
Q 041090 58 LSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT--------RVIAEGLRPDQTVVSKIMTRN--P 127 (294)
Q Consensus 58 ~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~--------~~~~~~~~~~~~~v~~~~~~~--~ 127 (294)
.+.+++|+.| ++||+++ =+.+.+. ++|+++.+=|+.+|+. .+...-......+.+++|... .
T Consensus 215 ~KTIvFitHD--LdEAlri-----G~rIaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~ 286 (386)
T COG4175 215 KKTIVFITHD--LDEALRI-----GDRIAIM-KDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLL 286 (386)
T ss_pred CCeEEEEecC--HHHHHhc-----cceEEEe-cCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccc
Confidence 4466677666 8899885 1344444 4899999999998863 222222233345677788631 1
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhh
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYA 206 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 206 (294)
..-.+...-..++..+.....+.+.+++ +++.+|+++..++...
T Consensus 287 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----------------------------------- 331 (386)
T COG4175 287 IRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----------------------------------- 331 (386)
T ss_pred cccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----------------------------------
Confidence 1112223334567777776666666777 7789999998776431
Q ss_pred hHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090 207 FIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 207 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~ 277 (294)
.+.. .+.++.+++++.+.+..+.+.+. .++|+| +|+++|+|++..++..+..
T Consensus 332 ----------------~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ----------------ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ----------------cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 2222 68889999999999998887766 688888 8999999999999965543
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=2.3e-06 Score=63.68 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=48.8
Q ss_pred cchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 218 PSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 218 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
.++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|+..||.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 458889976 899999999999999999999999999999 79999999999986
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.04 E-value=1.9e-05 Score=48.14 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=41.4
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 041090 61 ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT 105 (294)
Q Consensus 61 ~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~ 105 (294)
+.++.+++++.++++.|.+++...+||++++++++|+++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence 567899999999999999999999999998899999999999964
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.01 E-value=8.2e-05 Score=68.96 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=89.8
Q ss_pred ceeecCC-CCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcC----------------------CCCc
Q 041090 61 ALTIPEG-TIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEG----------------------LRPD 115 (294)
Q Consensus 61 ~~~v~~~-~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~----------------------~~~~ 115 (294)
...++.+ +++++...+|.++.++.+||+-+ ..+++|++..+|+.-.+.... ....
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 5666665 89999999999999999998743 578999999999865554210 1122
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~ 171 (294)
...+++++...+.++...++.+.++.++++-+...+.|.++|++.|+||.+|+++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRH 693 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHh
Confidence 34567788778889999999999999999999988888889999999999999864
No 200
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.01 E-value=0.00018 Score=64.98 Aligned_cols=47 Identities=11% Similarity=0.284 Sum_probs=41.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 229 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~ 276 (294)
...++++++++.+++..+.+.+. .++|+|+|+++|+|++.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeCCeEEEEEeHHHHHHHHh
Confidence 67889999999999998887665 688999999999999999996654
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.94 E-value=3.5e-05 Score=46.93 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=40.3
Q ss_pred eeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 230 VAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 230 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
+.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence 56789999999999999999999999999 689999999999983
No 202
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00027 Score=65.67 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=89.2
Q ss_pred CeEEcCC-CcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090 127 PIFVTSD-SLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS 202 (294)
Q Consensus 127 ~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 202 (294)
...++.+ .++.+...+|.+..+..+||+- .+.++|++.++++...+... .+.++... ....+.+-+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a-r~~q~~~~---------~~~~~f~~~ 627 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA-RKIQSFIV---------TTSIYFNDP 627 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh-ccccccce---------ecccccCCC
Confidence 4444444 7999999999988888788764 56799999999987654421 11110000 000000000
Q ss_pred ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
.+ ......-....++++|.- .+.++...++.+-+++++.+-+++.+.|..+|++.|+||.+|+++
T Consensus 628 ~~----~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~ 692 (696)
T KOG0475|consen 628 SP----SAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLR 692 (696)
T ss_pred Cc----cccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHH
Confidence 00 000111123457788866 899999999999999999999999999998999999999999994
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.09 E-value=0.0034 Score=56.79 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=76.6
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.+-+++.++|.+.......+.+ .|++. ++...+.|+|. |+++..+.. .+... . ....+.+ +....
T Consensus 271 ~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~-~~~~~-~--~~~~~~~-~~~~~ 335 (382)
T TIGR03415 271 LNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKL-PVQAW-A--AEQEVES-LEAAP 335 (382)
T ss_pred ccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchH-hHhhc-c--cccchhh-hcccC
Confidence 4567889999543333343333 44443 78889999995 788877764 22221 0 1223555 45567
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI 173 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~ 173 (294)
.++++++++.+++..+.+.+.. ++|+++|+++|+|+..+++..+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 336 TVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence 7899999999999988876654 67888899999999999987653
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0094 Score=56.88 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHH
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDIT 104 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~ 104 (294)
....+.|.++|.+++.+|..++|..|.-+.+..+.++.+|++|+ +--++|.|..+.+.
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~ 643 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLT 643 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHH
Confidence 45778999999999999999999999988888877999999997 34689999999885
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.015 Score=55.55 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=50.2
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~ 174 (294)
...|+++|.+++..+..+.+..++.+.+.......+|+++ +.-++|.|.+..|+..+.+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 4578999999999999999999999988876688999988 2458999999998876655
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0062 Score=52.74 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=82.3
Q ss_pred cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
+.++++++|.+ ..+.-.+...-..++..+.+.....+.+++.+++.+|+++..+.... .+...
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~ 336 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDD 336 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------ccccc
Confidence 55788999985 22222333445578888888887778888878889999999887521 33456
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
+..+..++++.+.+....+.... ++|+| +++++|+++...++.++.
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHh
Confidence 66788999999999888876654 67888 999999999999987654
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.88 E-value=0.091 Score=44.40 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=67.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH--------HHHHcC----CCCcccccccccccCC
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT--------RVIAEG----LRPDQTVVSKIMTRNP 127 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~--------~~~~~~----~~~~~~~v~~~~~~~~ 127 (294)
.+++|+-| +.||+++ -+.+.|.+ +|+++.+-++.+++. .++-.+ ...+...+.+.+....
T Consensus 188 TivfVTHD--idEA~kL-----adri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~ 259 (309)
T COG1125 188 TIVFVTHD--IDEALKL-----ADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE 259 (309)
T ss_pred EEEEEecC--HHHHHhh-----hceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence 44555554 8899987 46677887 799999999887763 222222 1122334445443322
Q ss_pred e----EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 128 I----FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 128 ~----~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
. .+.......+++..+...+...+||+| +|+++|.++..+++..
T Consensus 260 ~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 PADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 1 122333345566666667888999999 9999999999998753
No 208
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.21 E-value=0.074 Score=49.85 Aligned_cols=124 Identities=11% Similarity=0.153 Sum_probs=88.7
Q ss_pred CCcccchhccccC--CceeecCCCCHH-HHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVS-DACRRMASRRVDAVLLTDAN--ALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~-~a~~~~~~~~~~~lpV~d~~--~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 121 (294)
+.....++|+|++ ++..+..+..+. +......+.+++.+||.+.+ .++-|++....+ .+..........++..
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~ 277 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSE 277 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchh
Confidence 3466779999998 667777777776 55556668999999999863 233333333333 2222222455667888
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI 173 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~ 173 (294)
.+......++.++++.+.++.+.+.+.|.+.|.+...-+++++..++ ....
T Consensus 278 ~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 278 SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred hhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhc
Confidence 88888888999999999999999888888777775557888888887 5444
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.04 E-value=0.22 Score=42.17 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=44.7
Q ss_pred CcccchhccccCCc----eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 041090 48 GGERTVKKLRLSKA----LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT 105 (294)
Q Consensus 48 ~~~~~v~dl~~~~~----~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~ 105 (294)
+...++.+.|.+.. -.+.....-.+++..+...+...+||+|++|+++|.+|..+++.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 45566777776533 22344556667888888999999999999999999999999974
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=87.35 E-value=0.41 Score=44.93 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=81.6
Q ss_pred Cccccccccccc--CCeEEcCCCcHH-HHHHHHHhCCCcEEEEEE-CC-EEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090 114 PDQTVVSKIMTR--NPIFVTSDSLAI-EALQKMVQGKFRHLPVVE-NG-EVIAILDITKCLYDAISRMEKAAEQGSAIAA 188 (294)
Q Consensus 114 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~~-~~vGivt~~dll~~~~~~~~~~~~~~~~~~~ 188 (294)
+.+..++++|.+ .+.....+..+. +......+.+++++||.+ +. ..+|. -|......-
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~----~L~~~~~~~------------- 263 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGG----LLVMNLLRL------------- 263 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhH----HHHhhhhhh-------------
Confidence 334566777754 445556666665 444455678999999998 32 23333 121111110
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeeh
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS 268 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~ 268 (294)
.... ..+...++..++.. .+..++.++++.+.++.+.....|.+.|.+...-+|+++.
T Consensus 264 -------------------~~~~-~~~~~~~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l 321 (498)
T KOG2118|consen 264 -------------------LQVE-VPLEPLPVSESALL--RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTL 321 (498)
T ss_pred -------------------hccc-cccccccchhhhcc--ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEec
Confidence 0000 13345667888877 8999999999999999999999988888876677899999
Q ss_pred hHHHHHHH
Q 041090 269 KDVLMRVV 276 (294)
Q Consensus 269 ~Dil~~~~ 276 (294)
.|+ ....
T Consensus 322 ~~~-~~~~ 328 (498)
T KOG2118|consen 322 EDL-EEVV 328 (498)
T ss_pred cch-hhhc
Confidence 998 5665
No 211
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=78.90 E-value=6.5 Score=26.74 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=27.1
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHccC------CCCcceeeeccc
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQNL------SPELTLVERFIM 292 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~------~~~~~~v~~~~~ 292 (294)
..+-|++ +|+.+|++++.+.++..-..++ +...+||-.+|.
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~d 60 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMD 60 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEec
Confidence 4566777 8999999999999977777777 334567766663
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=73.93 E-value=25 Score=34.30 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=67.2
Q ss_pred chhccccCCceeecCCCC-HHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----CCCccccccc-----
Q 041090 52 TVKKLRLSKALTIPEGTI-VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----LRPDQTVVSK----- 121 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~s-v~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----~~~~~~~v~~----- 121 (294)
.+.+.+.++-..+....+ +++....+...+ ..+++.|.+|.++.+....++++.+...+ ....+..++.
T Consensus 42 ~~~~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~ 120 (638)
T PRK11388 42 TFASIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSL 120 (638)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHH
Confidence 344555554455555555 566666666666 78999999999999999888765443322 2222222211
Q ss_pred cc-ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEe
Q 041090 122 IM-TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILD 164 (294)
Q Consensus 122 ~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt 164 (294)
.+ ...++.+.......+.+.. ......||.+ +|+++|+++
T Consensus 121 al~~~~pv~v~g~EH~~~~~~~---~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 121 AAISGQPVKTMGDQHFKQALHN---WAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred HHhcCCceEEecHHHHHHhccC---ceEEeeEEEcCCCCEEEEEE
Confidence 11 2456667766555444432 2345689999 899999996
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=60.08 E-value=29 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHHHcC
Q 041090 82 VDAVLLTDANALLSGIVTDKDITTRVIAEG 111 (294)
Q Consensus 82 ~~~lpV~d~~~~~~Givt~~di~~~~~~~~ 111 (294)
...+-|++++|..+|+++.++-++..-..+
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 567888999999999999999875544444
No 214
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=53.61 E-value=28 Score=27.61 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=31.0
Q ss_pred CceeEEee-CCeEeEeeehhHHHHHHHHccCC-----C-Ccceeeecc
Q 041090 251 SNSALIVT-GSKIQGILTSKDVLMRVVAQNLS-----P-ELTLVERFI 291 (294)
Q Consensus 251 ~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~-----~-~~~~v~~~~ 291 (294)
...+-+++ +|.-+|+++..+-|...-..+++ | -.+||-.||
T Consensus 18 ~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKIm 65 (176)
T COG0290 18 AREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIM 65 (176)
T ss_pred ccEEEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEee
Confidence 34566777 89999999999999666667772 2 367777777
No 215
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=52.69 E-value=1.3e+02 Score=28.74 Aligned_cols=84 Identities=12% Similarity=0.233 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHh-CCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHhC
Q 041090 68 TIVSDACRRMAS-RRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG 146 (294)
Q Consensus 68 ~sv~~a~~~~~~-~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 146 (294)
..+....+.+++ ++...+.|.|.+| +-+-++..= ++ |.+.....-..++..........-++..+++.
T Consensus 73 ~~iq~~~~~i~~~t~a~fIVV~d~~g--IR~~HP~pe--rI---Gkp~~ggde~a~~~G~~yvS~~kGslg~s~R~---- 141 (537)
T COG3290 73 ARIQAIAEAIRSITDADFIVVGDMKG--IRLTHPNPE--RI---GKPFQGGDEEAALAGESYVSTAKGSLGKSLRA---- 141 (537)
T ss_pred hhHHHHHHHHHhhcCceEEEEecCCc--ceecCCChH--Hh---CCCccCCCHHHHhCCceeEEEeeccchhhhee----
Confidence 556666777766 6777788888666 333442220 11 11111111122223333223333355555432
Q ss_pred CCcEEEEEE-CCEEEEEEeh
Q 041090 147 KFRHLPVVE-NGEVIAILDI 165 (294)
Q Consensus 147 ~~~~~~V~~-~~~~vGivt~ 165 (294)
..||.| +|+.+|+|+.
T Consensus 142 ---~~PI~d~~g~~IGvVsV 158 (537)
T COG3290 142 ---KVPIFDEDGKQIGVVSV 158 (537)
T ss_pred ---ecceECCCCCEEEEEEE
Confidence 469999 8999999963
No 216
>CHL00199 infC translation initiation factor 3; Provisional
Probab=50.15 E-value=25 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=28.9
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHccCCC------Ccceeeecc
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQNLSP------ELTLVERFI 291 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~------~~~~v~~~~ 291 (294)
..+-|+| +|+.+|+++..+.++.+-..+++. ..+||-.+|
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKIm 71 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRII 71 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCeEEEe
Confidence 4566677 788888888888887777777733 456776666
No 217
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=47.95 E-value=27 Score=27.99 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.5
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHccCCC------Ccceeeecc
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQNLSP------ELTLVERFI 291 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~------~~~~v~~~~ 291 (294)
..+-|++ +|+.+|+++..+.++.+-..+++. ..+||-.+|
T Consensus 20 ~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~ 66 (177)
T PRK00028 20 REVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIM 66 (177)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCEEEEE
Confidence 3455666 777778888888876666666622 244665555
No 218
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=47.17 E-value=76 Score=31.01 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHh
Q 041090 136 AIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRER 214 (294)
Q Consensus 136 l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 214 (294)
+..+.+.+...+ ..+.++| +|.++.+....+++..+.... ...|.... +.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~------------------~~~G~~w~----------E~ 111 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALG------------------FNDGTYCA----------EG 111 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcC------------------CccCCccc----------hh
Confidence 445555565555 5677888 999999888777665432200 00011100 00
Q ss_pred hcccc-hhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 215 MFKPS-LSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 215 ~~~~~-v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
...+. +.-.+. ...++.|.......+..+.+ ...+.||.| +|+++|+|+
T Consensus 112 ~~GTnaig~al~-~~~pv~v~g~EH~~~~~~~~---~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 112 IIGTNALSLAAI-SGQPVKTMGDQHFKQALHNW---AFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ccCcCHHHHHHh-cCCceEEecHHHHHHhccCc---eEEeeEEEcCCCCEEEEEE
Confidence 01111 111111 23566677766666655433 456899999 899999996
No 219
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=45.85 E-value=1.5e+02 Score=27.36 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc-ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEE-----E
Q 041090 82 VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK-IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-----E 155 (294)
Q Consensus 82 ~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~-~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~-----~ 155 (294)
++.++|.++ +.|++|-+||+ .+ ++. .+++ ++.+. -..-.+.++.++.+.+ ++..++|- -
T Consensus 306 v~v~~v~n~---VagLlTg~Di~-~l--~~~-----~~~d~~liP~-~~fldd~t~~~~~~~l---~~~v~v~~~~~~~~ 370 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE-EL--DLS-----EVKETVIIPG-RAFVHDMVAEEILKRD---GVDRIVVRGPDRLT 370 (404)
T ss_pred EEEEEecCc---ccccchHHHHH-Hh--cCC-----CCCCEEEecC-ccccccccHHHHHHHh---CCcEEEecCCceee
Confidence 555666664 99999999997 44 221 2222 22222 2234555777776655 45555542 2
Q ss_pred -CCEEEEEEehHHHHHHHHHHHH
Q 041090 156 -NGEVIAILDITKCLYDAISRME 177 (294)
Q Consensus 156 -~~~~vGivt~~dll~~~~~~~~ 177 (294)
+|+.-|..|..+++..-...+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
T TIGR03278 371 ADGEMSGGMTREEVLEFELEAFR 393 (404)
T ss_pred ecceecccccHHHHHHHHHHHHH
Confidence 6889999999999887655443
No 220
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=40.61 E-value=46 Score=31.49 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHHHc
Q 041090 236 SDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQ 278 (294)
Q Consensus 236 ~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~~~ 278 (294)
...+..+.+.....|=..++|+.+|++.|+|-.+|+++--+.+
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~E 454 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKE 454 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHH
Confidence 3457777777888888899999999999999999998654443
No 221
>CHL00199 infC translation initiation factor 3; Provisional
Probab=37.82 E-value=64 Score=26.01 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=20.0
Q ss_pred CHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHH
Q 041090 69 IVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDI 103 (294)
Q Consensus 69 sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di 103 (294)
+..+|++...+.+++-+.|-.. +--++=|+++..+
T Consensus 41 ~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdygK~ 76 (182)
T CHL00199 41 TSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYGKY 76 (182)
T ss_pred eHHHHHHHHHHcCCCEEEECCCCCCCeEEEeehHHH
Confidence 5666666666666665555432 2245566666555
No 222
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=35.93 E-value=41 Score=24.57 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=13.5
Q ss_pred CEEEEEcCCCcEEEEEeH
Q 041090 83 DAVLLTDANALLSGIVTD 100 (294)
Q Consensus 83 ~~lpV~d~~~~~~Givt~ 100 (294)
-..||.|.+|+++|++..
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999889999999864
No 223
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=33.61 E-value=40 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=16.5
Q ss_pred CceeEEeeCCeEeEeeehh
Q 041090 251 SNSALIVTGSKIQGILTSK 269 (294)
Q Consensus 251 ~~~lpVvd~g~~vGivt~~ 269 (294)
...+||.++|++||++++.
T Consensus 106 ~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 106 QEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEE
Confidence 4689999989999999954
No 224
>PRK13599 putative peroxiredoxin; Provisional
Probab=32.95 E-value=2.2e+02 Score=23.46 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=45.5
Q ss_pred ecCCCCHHHHHHHHHh----CCCCEEEEEcCCCcEEEEEe--------HHHHHHHHHH--cCCCCcccccccccc----c
Q 041090 64 IPEGTIVSDACRRMAS----RRVDAVLLTDANALLSGIVT--------DKDITTRVIA--EGLRPDQTVVSKIMT----R 125 (294)
Q Consensus 64 v~~~~sv~~a~~~~~~----~~~~~lpV~d~~~~~~Givt--------~~di~~~~~~--~~~~~~~~~v~~~~~----~ 125 (294)
.+++..+.+++.++.. ...+.+.|+|.+|++..+.. ..++++.+-. ........+-.++-. .
T Consensus 97 ~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~~~~~~g 176 (215)
T PRK13599 97 ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKWPNNYLIK 176 (215)
T ss_pred ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCC
Confidence 4455566665554322 13578888898888877764 3455543311 111111223344432 3
Q ss_pred CCeEEcCCCcHHHHHHHHH
Q 041090 126 NPIFVTSDSLAIEALQKMV 144 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~ 144 (294)
+.+.+++..+-.+|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (215)
T PRK13599 177 DHVIVPPSTDEASANERKE 195 (215)
T ss_pred CcEEEcCCCCHHHHHHhcc
Confidence 5677888888888877764
No 225
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=1.4e+02 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.3
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHH
Q 041090 81 RVDAVLLTDANALLSGIVTDKDITT 105 (294)
Q Consensus 81 ~~~~lpV~d~~~~~~Givt~~di~~ 105 (294)
+.+.+-+++++|.-+|+++..|-+.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~ 41 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALK 41 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHH
Confidence 4566777777888888888887664
No 226
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=32.11 E-value=78 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=18.3
Q ss_pred CHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHH
Q 041090 69 IVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDI 103 (294)
Q Consensus 69 sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di 103 (294)
+..+|+++..+.+++-+.|-.. +--++=|++...+
T Consensus 24 ~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy~k~ 59 (165)
T TIGR00168 24 SREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKY 59 (165)
T ss_pred cHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeHHHH
Confidence 4666666666666654443322 2234555555554
No 227
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=31.87 E-value=88 Score=25.12 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHH
Q 041090 68 TIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDI 103 (294)
Q Consensus 68 ~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di 103 (294)
.++.+|+++..+.+++-+.|-.. +--++=|+++..+
T Consensus 35 ~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy~k~ 71 (177)
T PRK00028 35 VSTREALELAEEAGLDLVEISPNAKPPVCKIMDYGKF 71 (177)
T ss_pred eeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeHHHH
Confidence 45677777777777665554332 2235566666655
No 228
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=30.73 E-value=92 Score=22.44 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=41.1
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhC---CCCEEEEEcC-CCcE----EEEEeHHHHHHHH
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASR---RVDAVLLTDA-NALL----SGIVTDKDITTRV 107 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~---~~~~lpV~d~-~~~~----~Givt~~di~~~~ 107 (294)
.|.+-.|.+++..+.+.+..+.+=.++.++.... ++..+.+++. +|++ .|.++.++++..+
T Consensus 39 vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 39 LWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred HcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHH
Confidence 5777888999888777776665434555555544 5556667777 6654 4888888886443
No 229
>PF14044 NETI: NETI protein
Probab=29.02 E-value=87 Score=19.88 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=20.2
Q ss_pred EeCCCCcHHHHHHHHHHhCCceeEEe
Q 041090 232 IVSPSDPVAVAAKKMREFRSNSALIV 257 (294)
Q Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVv 257 (294)
.|.++.++.+.++.|.+.|+ .||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 47889999999999999987 4554
No 230
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.23 E-value=1.8e+02 Score=27.72 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=31.5
Q ss_pred cHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 135 LAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
.+..+.+...+.+-.-++|+.+++++|+|...|+++--++
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 4566666666666667888889999999999999987554
No 231
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=25.25 E-value=86 Score=20.89 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.6
Q ss_pred EEEEEcCCCcEEEEEeH
Q 041090 84 AVLLTDANALLSGIVTD 100 (294)
Q Consensus 84 ~lpV~d~~~~~~Givt~ 100 (294)
+.||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 57888988999998753
No 232
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.78 E-value=1.3e+02 Score=19.24 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 234 SPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 234 ~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
....++.+.++...+.|++.+.+.|.+.+-|.....+..
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~ 50 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAA 50 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHH
Confidence 556789999999999999999999987788877655554
No 233
>smart00594 UAS UAS domain.
Probab=24.64 E-value=1e+02 Score=22.73 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCC---CCEEEEEcCCC---------cEEEEEeHHHHHH
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRR---VDAVLLTDANA---------LLSGIVTDKDITT 105 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~---~~~lpV~d~~~---------~~~Givt~~di~~ 105 (294)
-|.+-.|.+++..+.+.+..+.+-.++.+++...+ +-.+.+++.++ ++-|.++.++++.
T Consensus 49 vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~ 119 (122)
T smart00594 49 VLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMT 119 (122)
T ss_pred HccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHH
Confidence 57788888898888887666655566766666654 44566666654 4556666666653
No 234
>PF07636 PSRT: PSRT; InterPro: IPR011504 This motif is found at the N terminus of several short hypothetical proteins in Rhodopirellula baltica and the predicted Arylsulphatase B (3.1.6.12 from EC) Q7UX97 from SWISSPROT.
Probab=23.93 E-value=73 Score=17.24 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 041090 5 GGSRRSQKRAPSTSKRT 21 (294)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (294)
++|||.+.|+-|.+.++
T Consensus 11 psPSRTpeRrrS~s~qt 27 (32)
T PF07636_consen 11 PSPSRTPERRRSTSPQT 27 (32)
T ss_pred CCCCCCcccccccCccc
Confidence 46777777766665543
No 235
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=23.84 E-value=59 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.5
Q ss_pred CCCCEEEEEcCCCcEEEE
Q 041090 80 RRVDAVLLTDANALLSGI 97 (294)
Q Consensus 80 ~~~~~lpV~d~~~~~~Gi 97 (294)
.+.+.-||+|.+|+++||
T Consensus 103 ~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEEETTSEEEEE
T ss_pred CCcEeHhEECCCCEEEeC
Confidence 467888999999999996
No 236
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=23.18 E-value=2.6e+02 Score=19.32 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCeEeEeeehhHHHHHHHHc-cCC
Q 041090 259 GSKIQGILTSKDVLMRVVAQ-NLS 281 (294)
Q Consensus 259 ~g~~vGivt~~Dil~~~~~~-~~~ 281 (294)
+|++-|=||..||...+..+ |+.
T Consensus 25 ~gklfGSVt~~dIa~~l~~~~g~~ 48 (87)
T PF03948_consen 25 NGKLFGSVTSKDIAKALKEQTGIE 48 (87)
T ss_dssp CSSBSSEBSHHHHHHHHHHCCSSS
T ss_pred CcceecCcCHHHHHHHHHHhhCCe
Confidence 69999999999999888888 663
No 237
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=21.82 E-value=1.5e+02 Score=24.39 Aligned_cols=40 Identities=20% Similarity=0.475 Sum_probs=24.9
Q ss_pred CceeEEee---CC--eEeEeeehhHHHHHHHHccCCCCcceeeecc
Q 041090 251 SNSALIVT---GS--KIQGILTSKDVLMRVVAQNLSPELTLVERFI 291 (294)
Q Consensus 251 ~~~lpVvd---~g--~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~ 291 (294)
++-++|.| .+ .+.|.+|-+||++.+-...+. +.+.+-++|
T Consensus 127 v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~-d~lllP~~m 171 (204)
T PF04459_consen 127 VEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELG-DLLLLPDVM 171 (204)
T ss_pred EEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCC-CEEEECHHH
Confidence 45555655 23 478999999999666554443 444444444
No 238
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=21.24 E-value=1.2e+02 Score=23.95 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=14.4
Q ss_pred EEEEEECCEEEEEEehH
Q 041090 150 HLPVVENGEVIAILDIT 166 (294)
Q Consensus 150 ~~~V~~~~~~vGivt~~ 166 (294)
.+||..+|+++|+++..
T Consensus 118 VvPi~~~g~~iGvlDiD 134 (163)
T COG1956 118 VVPIFKDGKLIGVLDID 134 (163)
T ss_pred EEEEEECCEEEEEEecC
Confidence 57888899999999754
Done!