Query 041090
Match_columns 294
No_of_seqs 229 out of 3049
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddj_A CBS domain-containing p 100.0 4.7E-29 1.6E-33 216.8 13.3 212 37-292 6-234 (296)
2 3kh5_A Protein MJ1225; AMPK, A 100.0 2.8E-27 9.5E-32 203.6 21.9 195 50-274 83-278 (280)
3 3ddj_A CBS domain-containing p 100.0 2.4E-27 8.1E-32 206.0 18.4 193 49-277 91-285 (296)
4 3kh5_A Protein MJ1225; AMPK, A 99.9 3.4E-27 1.2E-31 203.0 16.5 182 54-275 7-203 (280)
5 2yzq_A Putative uncharacterize 99.9 6.6E-27 2.3E-31 201.6 15.5 212 49-275 58-277 (282)
6 3t4n_C Nuclear protein SNF4; C 99.9 1.7E-25 6E-30 196.6 20.9 190 53-278 116-321 (323)
7 2yzq_A Putative uncharacterize 99.9 3.3E-26 1.1E-30 197.2 11.2 176 51-272 1-179 (282)
8 3t4n_C Nuclear protein SNF4; C 99.9 1.7E-25 5.9E-30 196.6 15.0 209 49-293 28-264 (323)
9 2qrd_G Protein C1556.08C; AMPK 99.9 1.9E-24 6.6E-29 190.8 16.5 207 49-292 20-258 (334)
10 2v8q_E 5'-AMP-activated protei 99.9 4E-24 1.4E-28 188.5 17.0 190 52-277 119-323 (330)
11 2v8q_E 5'-AMP-activated protei 99.9 3.2E-24 1.1E-28 189.2 15.8 211 49-291 33-265 (330)
12 2qrd_G Protein C1556.08C; AMPK 99.9 2.5E-23 8.4E-28 183.7 19.9 188 55-278 111-316 (334)
13 4esy_A CBS domain containing m 99.9 1.1E-22 3.9E-27 162.3 8.0 128 47-174 14-162 (170)
14 3l2b_A Probable manganase-depe 99.9 1.6E-20 5.6E-25 158.6 19.4 196 48-274 4-241 (245)
15 4esy_A CBS domain containing m 99.9 1.1E-21 3.9E-26 156.5 9.0 145 116-277 17-162 (170)
16 3lv9_A Putative transporter; C 99.9 2E-20 6.9E-25 145.7 15.4 123 47-174 19-145 (148)
17 3fhm_A Uncharacterized protein 99.8 4E-20 1.4E-24 146.7 13.6 128 47-174 20-150 (165)
18 3hf7_A Uncharacterized CBS-dom 99.8 3.2E-20 1.1E-24 141.5 11.9 123 50-174 1-127 (130)
19 2yzi_A Hypothetical protein PH 99.8 1.6E-19 5.5E-24 138.7 15.6 126 47-174 3-129 (138)
20 3k6e_A CBS domain protein; str 99.8 6.7E-20 2.3E-24 144.1 13.6 123 50-174 14-142 (156)
21 3lhh_A CBS domain protein; str 99.8 1.2E-19 4E-24 145.1 14.7 123 47-174 38-164 (172)
22 2rc3_A CBS domain; in SITU pro 99.8 1.1E-19 3.8E-24 139.1 13.9 123 51-174 6-131 (135)
23 3lv9_A Putative transporter; C 99.8 1.4E-19 4.6E-24 141.0 14.5 138 96-278 4-146 (148)
24 3kpb_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 136.5 13.5 118 51-173 1-119 (122)
25 1pbj_A Hypothetical protein; s 99.8 1.5E-19 5.1E-24 136.4 14.1 122 51-174 1-122 (125)
26 2o16_A Acetoin utilization pro 99.8 2.4E-19 8.2E-24 141.5 15.9 128 49-176 3-137 (160)
27 1y5h_A Hypothetical protein RV 99.8 3.5E-20 1.2E-24 141.5 10.5 124 49-172 6-129 (133)
28 3jtf_A Magnesium and cobalt ef 99.8 8.3E-20 2.8E-24 138.9 12.4 121 48-174 2-126 (129)
29 3i8n_A Uncharacterized protein 99.8 5.1E-20 1.7E-24 140.2 10.9 123 47-173 2-128 (130)
30 3nqr_A Magnesium and cobalt ef 99.8 3E-20 1E-24 140.9 9.4 120 50-173 2-125 (127)
31 2ef7_A Hypothetical protein ST 99.8 2.8E-19 9.4E-24 136.5 14.7 124 49-175 2-126 (133)
32 3oco_A Hemolysin-like protein 99.8 7E-20 2.4E-24 143.5 11.6 124 48-176 17-145 (153)
33 3k2v_A Putative D-arabinose 5- 99.8 1.9E-19 6.6E-24 140.3 13.8 121 49-170 26-148 (149)
34 3lfr_A Putative metal ION tran 99.8 4E-20 1.4E-24 142.0 9.2 123 50-175 2-128 (136)
35 3fv6_A YQZB protein; CBS domai 99.8 4.5E-19 1.5E-23 139.8 15.3 127 46-174 12-144 (159)
36 3gby_A Uncharacterized protein 99.8 1.2E-19 4.1E-24 137.7 11.1 122 49-173 3-125 (128)
37 1vr9_A CBS domain protein/ACT 99.8 3.6E-19 1.2E-23 147.2 14.3 158 51-258 13-171 (213)
38 2rih_A Conserved protein with 99.8 5.1E-19 1.7E-23 136.5 14.2 122 50-174 4-128 (141)
39 1o50_A CBS domain-containing p 99.8 5.5E-19 1.9E-23 138.9 14.2 128 45-174 10-153 (157)
40 3lhh_A CBS domain protein; str 99.8 5.9E-19 2E-23 141.0 13.8 140 94-278 21-165 (172)
41 4gqw_A CBS domain-containing p 99.8 3E-19 1E-23 139.1 11.8 127 48-174 2-143 (152)
42 2p9m_A Hypothetical protein MJ 99.8 8.4E-19 2.9E-23 134.6 14.0 124 48-173 5-135 (138)
43 4fry_A Putative signal-transdu 99.8 5.3E-19 1.8E-23 138.9 12.8 124 50-174 6-135 (157)
44 3lqn_A CBS domain protein; csg 99.8 5.3E-19 1.8E-23 137.8 12.3 127 47-175 11-144 (150)
45 2nyc_A Nuclear protein SNF4; b 99.8 1.2E-18 4.2E-23 134.5 14.0 127 48-174 5-141 (144)
46 3sl7_A CBS domain-containing p 99.8 3.1E-19 1.1E-23 143.2 11.0 126 50-175 3-157 (180)
47 1pvm_A Conserved hypothetical 99.8 1.1E-18 3.6E-23 141.0 13.3 124 51-174 9-133 (184)
48 2pfi_A Chloride channel protei 99.8 2.7E-18 9.1E-23 135.6 15.4 128 47-174 9-147 (164)
49 2uv4_A 5'-AMP-activated protei 99.8 1.5E-18 5.2E-23 135.6 13.2 126 46-173 18-150 (152)
50 3kxr_A Magnesium transporter, 99.8 4.4E-18 1.5E-22 139.7 16.2 121 48-175 51-175 (205)
51 3ocm_A Putative membrane prote 99.8 1.9E-18 6.6E-23 138.1 13.6 122 47-174 32-157 (173)
52 2j9l_A Chloride channel protei 99.8 3.1E-18 1.1E-22 138.0 15.0 127 48-174 8-165 (185)
53 1yav_A Hypothetical protein BS 99.8 9.5E-19 3.3E-23 137.8 11.7 128 47-176 10-144 (159)
54 3fhm_A Uncharacterized protein 99.8 2.4E-18 8.1E-23 136.4 13.9 141 113-292 20-164 (165)
55 1pbj_A Hypothetical protein; s 99.8 3.6E-18 1.2E-22 128.7 13.8 120 118-276 2-121 (125)
56 3ctu_A CBS domain protein; str 99.8 3.1E-18 1.1E-22 134.3 13.5 125 48-174 12-142 (156)
57 3oi8_A Uncharacterized protein 99.8 4.4E-19 1.5E-23 139.4 8.4 118 47-169 34-155 (156)
58 3i8n_A Uncharacterized protein 99.8 2.3E-18 7.8E-23 131.0 11.7 121 115-277 4-129 (130)
59 2emq_A Hypothetical conserved 99.8 2.9E-18 9.9E-23 134.6 12.4 126 47-174 7-139 (157)
60 2ef7_A Hypothetical protein ST 99.8 7.4E-18 2.5E-22 128.5 14.3 122 116-277 3-125 (133)
61 3kpb_A Uncharacterized protein 99.8 2.5E-18 8.4E-23 129.1 11.3 115 118-275 2-118 (122)
62 3k6e_A CBS domain protein; str 99.8 2.3E-18 7.8E-23 135.4 11.0 125 116-277 14-142 (156)
63 2o16_A Acetoin utilization pro 99.8 1.2E-17 4.1E-22 131.7 14.7 130 116-276 4-134 (160)
64 3jtf_A Magnesium and cobalt ef 99.8 2.1E-18 7.2E-23 131.1 9.5 118 116-277 4-126 (129)
65 3hf7_A Uncharacterized CBS-dom 99.8 3.3E-18 1.1E-22 130.2 10.3 121 117-277 2-127 (130)
66 4fry_A Putative signal-transdu 99.8 7.2E-18 2.5E-22 132.4 12.2 137 117-292 7-149 (157)
67 3nqr_A Magnesium and cobalt ef 99.8 1.4E-18 4.8E-23 131.7 7.8 120 116-277 2-126 (127)
68 3gby_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 129.6 9.5 120 116-275 4-124 (128)
69 3oco_A Hemolysin-like protein 99.7 9.7E-18 3.3E-22 131.2 12.2 121 115-278 18-144 (153)
70 2rih_A Conserved protein with 99.7 1.7E-17 5.9E-22 127.8 13.4 119 116-275 4-126 (141)
71 3k2v_A Putative D-arabinose 5- 99.7 1E-17 3.5E-22 130.4 12.0 117 117-272 28-147 (149)
72 3ocm_A Putative membrane prote 99.7 1E-17 3.5E-22 133.9 12.1 142 92-279 13-159 (173)
73 2rc3_A CBS domain; in SITU pro 99.7 1.2E-17 4E-22 127.7 11.9 122 117-276 6-130 (135)
74 2d4z_A Chloride channel protei 99.7 2.5E-17 8.5E-22 138.8 14.8 126 48-173 10-245 (250)
75 2yzi_A Hypothetical protein PH 99.7 2.1E-17 7E-22 126.8 13.1 126 114-280 4-131 (138)
76 3lfr_A Putative metal ION tran 99.7 2E-18 6.9E-23 132.4 7.1 121 116-277 2-127 (136)
77 3fv6_A YQZB protein; CBS domai 99.7 2.9E-17 9.8E-22 129.3 13.3 124 116-277 16-144 (159)
78 2p9m_A Hypothetical protein MJ 99.7 1.5E-17 5.2E-22 127.5 11.1 121 116-276 7-135 (138)
79 2pfi_A Chloride channel protei 99.7 6.1E-17 2.1E-21 127.7 14.5 130 114-278 10-148 (164)
80 1y5h_A Hypothetical protein RV 99.7 5.5E-18 1.9E-22 129.2 8.0 122 116-275 7-129 (133)
81 2oux_A Magnesium transporter; 99.7 5.8E-17 2E-21 139.9 14.2 122 47-175 133-260 (286)
82 3kxr_A Magnesium transporter, 99.7 1.7E-17 5.7E-22 136.3 10.2 120 113-277 50-174 (205)
83 4gqw_A CBS domain-containing p 99.7 4E-17 1.4E-21 127.0 11.8 136 116-277 4-143 (152)
84 1o50_A CBS domain-containing p 99.7 1.8E-16 6.2E-21 124.4 14.8 142 111-277 10-153 (157)
85 2nyc_A Nuclear protein SNF4; b 99.7 1.8E-16 6.3E-21 122.2 14.3 127 116-278 7-142 (144)
86 3lqn_A CBS domain protein; csg 99.7 4.5E-17 1.5E-21 126.8 10.6 126 116-277 14-143 (150)
87 2j9l_A Chloride channel protei 99.7 1.3E-16 4.4E-21 128.5 13.5 149 115-278 9-166 (185)
88 2yvy_A MGTE, Mg2+ transporter 99.7 1.2E-16 4E-21 137.4 13.5 120 48-174 132-257 (278)
89 3sl7_A CBS domain-containing p 99.7 6.1E-17 2.1E-21 129.7 11.0 151 116-278 3-157 (180)
90 3ctu_A CBS domain protein; str 99.7 7.1E-17 2.4E-21 126.5 11.1 127 116-280 14-144 (156)
91 3pc3_A CG1753, isoform A; CBS, 99.7 1.3E-16 4.3E-21 149.0 14.4 125 47-174 380-511 (527)
92 2d4z_A Chloride channel protei 99.7 3.4E-16 1.2E-20 131.9 15.5 159 115-276 11-245 (250)
93 3oi8_A Uncharacterized protein 99.7 1E-17 3.5E-22 131.5 5.0 117 113-272 34-155 (156)
94 2uv4_A 5'-AMP-activated protei 99.7 3.2E-16 1.1E-20 122.3 13.0 120 116-275 22-149 (152)
95 2emq_A Hypothetical conserved 99.7 2.1E-16 7E-21 123.9 11.4 129 114-278 8-140 (157)
96 1pvm_A Conserved hypothetical 99.7 1.6E-16 5.4E-21 128.2 10.4 122 116-275 8-131 (184)
97 1yav_A Hypothetical protein BS 99.7 1.3E-16 4.4E-21 125.5 9.2 128 114-277 11-142 (159)
98 1vr9_A CBS domain protein/ACT 99.7 2.7E-16 9.1E-21 129.9 10.3 119 114-277 10-130 (213)
99 2oux_A Magnesium transporter; 99.6 5E-16 1.7E-20 134.0 10.8 121 112-277 132-259 (286)
100 3usb_A Inosine-5'-monophosphat 99.6 1.2E-14 4.2E-19 134.4 19.7 114 53-172 115-232 (511)
101 3org_A CMCLC; transporter, tra 99.6 2.9E-16 9.9E-21 149.3 8.6 123 49-171 451-622 (632)
102 2zy9_A Mg2+ transporter MGTE; 99.6 2.9E-15 9.9E-20 137.7 14.9 121 48-175 152-278 (473)
103 2yvy_A MGTE, Mg2+ transporter 99.6 1.3E-15 4.4E-20 130.9 11.0 118 114-276 132-256 (278)
104 3pc3_A CG1753, isoform A; CBS, 99.6 1E-14 3.5E-19 136.1 11.3 123 116-279 383-513 (527)
105 1me8_A Inosine-5'-monophosphat 99.6 6.8E-16 2.3E-20 142.9 3.1 115 53-172 98-219 (503)
106 2zy9_A Mg2+ transporter MGTE; 99.6 1.2E-14 4.3E-19 133.5 10.3 120 113-277 151-277 (473)
107 3ghd_A A cystathionine beta-sy 99.5 1.6E-14 5.3E-19 97.2 7.0 65 229-293 1-65 (70)
108 3org_A CMCLC; transporter, tra 99.5 4.6E-15 1.6E-19 141.1 4.4 155 115-273 451-621 (632)
109 1zfj_A Inosine monophosphate d 99.5 1.8E-13 6.1E-18 126.7 14.2 116 52-173 91-210 (491)
110 4fxs_A Inosine-5'-monophosphat 99.5 1.5E-14 5.2E-19 133.3 5.9 114 52-171 90-206 (496)
111 3ghd_A A cystathionine beta-sy 99.5 1.3E-13 4.4E-18 92.6 7.0 70 60-130 1-70 (70)
112 1vrd_A Inosine-5'-monophosphat 99.4 1.5E-14 5.2E-19 133.9 0.1 116 52-173 96-214 (494)
113 4avf_A Inosine-5'-monophosphat 99.4 7E-14 2.4E-18 128.8 4.1 114 51-171 88-204 (490)
114 3usb_A Inosine-5'-monophosphat 99.4 1.1E-12 3.9E-17 121.2 10.9 117 118-277 114-234 (511)
115 4af0_A Inosine-5'-monophosphat 99.4 4.1E-14 1.4E-18 128.1 0.0 109 56-171 143-255 (556)
116 4fxs_A Inosine-5'-monophosphat 99.4 2.2E-13 7.4E-18 125.6 3.7 116 117-274 89-206 (496)
117 4avf_A Inosine-5'-monophosphat 99.3 8.3E-14 2.8E-18 128.3 -0.3 117 117-275 88-205 (490)
118 2cu0_A Inosine-5'-monophosphat 99.3 3.1E-13 1.1E-17 124.7 3.3 111 52-171 94-205 (486)
119 1me8_A Inosine-5'-monophosphat 99.3 1.6E-13 5.5E-18 127.0 0.2 114 123-277 103-221 (503)
120 1zfj_A Inosine monophosphate d 99.3 1.3E-11 4.3E-16 114.3 12.5 116 118-276 91-210 (491)
121 1vrd_A Inosine-5'-monophosphat 99.3 2.6E-13 9E-18 125.6 0.2 118 118-277 96-215 (494)
122 4af0_A Inosine-5'-monophosphat 99.2 6.8E-13 2.3E-17 120.2 0.1 110 122-276 143-257 (556)
123 3fio_A A cystathionine beta-sy 99.2 2.3E-11 7.8E-16 81.5 7.0 65 229-293 1-65 (70)
124 1jcn_A Inosine monophosphate d 99.2 1.6E-13 5.5E-18 127.6 -5.6 118 51-172 108-231 (514)
125 3fio_A A cystathionine beta-sy 99.2 6.8E-11 2.3E-15 79.1 7.0 69 60-129 1-69 (70)
126 2cu0_A Inosine-5'-monophosphat 99.1 4.9E-12 1.7E-16 116.7 0.1 109 120-274 96-205 (486)
127 1jcn_A Inosine monophosphate d 99.1 1.9E-12 6.4E-17 120.4 -4.0 131 99-275 96-231 (514)
128 3l2b_A Probable manganase-depe 98.6 4.5E-08 1.5E-12 81.9 5.2 58 49-106 183-241 (245)
129 1tif_A IF3-N, translation init 82.1 3.3 0.00011 27.4 5.3 40 252-291 14-60 (78)
130 1tif_A IF3-N, translation init 67.5 16 0.00054 24.1 5.6 31 81-111 12-42 (78)
131 1svj_A Potassium-transporting 45.9 9.8 0.00033 28.7 2.0 35 238-272 120-154 (156)
132 3k2t_A LMO2511 protein; lister 35.4 65 0.0022 19.6 4.2 26 66-91 11-36 (57)
133 3ka5_A Ribosome-associated pro 33.3 73 0.0025 20.0 4.3 33 66-98 11-43 (65)
134 3lyv_A Ribosome-associated fac 29.7 80 0.0028 19.9 4.0 26 66-91 12-37 (66)
135 1p0z_A Sensor kinase CITA; tra 27.1 47 0.0016 23.6 3.1 18 84-101 105-122 (131)
136 1svj_A Potassium-transporting 26.4 66 0.0023 24.0 3.9 33 136-168 121-153 (156)
137 3by8_A Sensor protein DCUS; hi 26.1 49 0.0017 24.0 3.0 18 84-101 110-127 (142)
138 2lqo_A Putative glutaredoxin R 23.5 1.1E+02 0.0038 20.3 4.2 37 241-277 41-81 (92)
139 3fan_A Non-structural protein; 21.5 46 0.0016 26.3 2.1 23 250-272 125-148 (213)
140 3a2v_A Probable peroxiredoxin; 20.5 2.5E+02 0.0085 22.6 6.5 85 65-150 103-206 (249)
No 1
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.96 E-value=4.7e-29 Score=216.77 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=172.5
Q ss_pred CCCCCCCcCCCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC----
Q 041090 37 QGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---- 112 (294)
Q Consensus 37 ~~~~~~~~~~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---- 112 (294)
.+-.+.|.++.|...+|+|+|.++++++++++|+.+|++.|.+++++.+||+| |+++|++|.+||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~ 83 (296)
T 3ddj_A 6 IHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCS 83 (296)
T ss_dssp --------CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CC
T ss_pred cccchhhhhhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC--CeEEEEEeHHHHHHHhccccccccc
Confidence 34455667889999999999999999999999999999999999999999999 899999999999854421110
Q ss_pred -----CCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhH
Q 041090 113 -----RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAI 186 (294)
Q Consensus 113 -----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~ 186 (294)
.....+++++|.++++++.+++++.++++.|.+++++++||+| +|+++|++|..|++....
T Consensus 84 ~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~------------- 150 (296)
T 3ddj_A 84 QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK------------- 150 (296)
T ss_dssp HHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG-------------
T ss_pred chhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhh-------------
Confidence 1124689999999999999999999999999999999999998 899999999999875321
Q ss_pred HHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090 187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI 265 (294)
Q Consensus 187 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi 265 (294)
......++.++|.+ ++.++.+++++.+++++|.+++++.+||+| +|+++|+
T Consensus 151 --------------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Gi 202 (296)
T 3ddj_A 151 --------------------------DLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGI 202 (296)
T ss_dssp --------------------------GSCCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred --------------------------cccccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEE
Confidence 11234578999976 899999999999999999999999999999 8999999
Q ss_pred eehhHHHHHHHHccCC------CCcceeeeccc
Q 041090 266 LTSKDVLMRVVAQNLS------PELTLVERFIM 292 (294)
Q Consensus 266 vt~~Dil~~~~~~~~~------~~~~~v~~~~~ 292 (294)
||..|+++.+. .... ....++.++|+
T Consensus 203 vt~~dl~~~~~-~~~~~~~~~~~~~~~v~~~m~ 234 (296)
T 3ddj_A 203 VTVVNAIKQLA-KAVDKLDPDYFYGKVVKDVMV 234 (296)
T ss_dssp EEHHHHHHHHH-HHHHHTCTHHHHTCBHHHHSB
T ss_pred EEHHHHHHHHH-HHHhhcChhhhcCcCHHHHhC
Confidence 99999995544 2211 12456777775
No 2
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.96 E-value=2.8e-27 Score=203.57 Aligned_cols=195 Identities=21% Similarity=0.320 Sum_probs=163.3
Q ss_pred ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090 50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129 (294)
Q Consensus 50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (294)
+.+|+++|.++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+. ..... ..+++++|.+++++
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~-~~~v~~~m~~~~~~ 160 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL-DKIDE-NEVIDDYITRDVIV 160 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG-GGSCT-TCBSGGGCBCSCCC
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh-hcCCC-CCCHHHHhCCCCeE
Confidence 56899999999999999999999999999999999999999999999999999975543 33222 45899999989999
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE 209 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 209 (294)
+++++++.++++.|.+++++++||+++|+++|++|..|+++.......... .....
T Consensus 161 v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~---------------~~~~~--------- 216 (280)
T 3kh5_A 161 ATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNH---------------MQTGN--------- 216 (280)
T ss_dssp BCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHH---------------HHSCC---------
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhh---------------hcccc---------
Confidence 999999999999999999999999998999999999999876543211000 00000
Q ss_pred HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
.......++.++|.+ ++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.
T Consensus 217 --~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~ 278 (280)
T 3kh5_A 217 --VREITNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY 278 (280)
T ss_dssp --THHHHHCBHHHHSBS--SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred --hhhhhCCcHHHHhcC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence 001124678999976 999999999999999999999999999999 6799999999999843
No 3
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.95 E-value=2.4e-27 Score=206.05 Aligned_cols=193 Identities=19% Similarity=0.286 Sum_probs=166.3
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
...+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+ ... ....+++++|.++++
T Consensus 91 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~-~~~--~~~~~v~~~m~~~~~ 167 (296)
T 3ddj_A 91 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY-KDL--DEIFPVKVFMSTKVQ 167 (296)
T ss_dssp HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG-GGS--CCCCBHHHHSBCSCC
T ss_pred hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhh-hcc--cccccHHHhhcCCCe
Confidence 36789999999999999999999999999999999999999999999999999997433 222 224589999999999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhh
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAF 207 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 207 (294)
++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+...+.....
T Consensus 168 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~-------------------------- 221 (296)
T 3ddj_A 168 TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDP-------------------------- 221 (296)
T ss_dssp CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCT--------------------------
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcCh--------------------------
Confidence 999999999999999999999999999 89999999999998875532211000
Q ss_pred HHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090 208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 208 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~ 277 (294)
......++.++|.+ ++.++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++.+..
T Consensus 222 -----~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~ 285 (296)
T 3ddj_A 222 -----DYFYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285 (296)
T ss_dssp -----HHHHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred -----hhhcCcCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHH
Confidence 11234679999977 999999999999999999999999999999 8999999999999966554
No 4
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.95 E-value=3.4e-27 Score=203.03 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=155.5
Q ss_pred hccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHH--------cCC-----CCccccc
Q 041090 54 KKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIA--------EGL-----RPDQTVV 119 (294)
Q Consensus 54 ~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~--------~~~-----~~~~~~v 119 (294)
.++|.++++++++++|+.+|+++|.+++++++||+|+ +|+++|++|.+||++.+.. ... .....++
T Consensus 7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (280)
T 3kh5_A 7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPV 86 (280)
T ss_dssp GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBG
T ss_pred HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhH
Confidence 4567779999999999999999999999999999997 7999999999999854311 100 0114589
Q ss_pred ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198 (294)
Q Consensus 120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 198 (294)
+++|.++++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++....
T Consensus 87 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~------------------------ 142 (280)
T 3kh5_A 87 REIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD------------------------ 142 (280)
T ss_dssp GGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG------------------------
T ss_pred HHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh------------------------
Confidence 999999999999999999999999999999999999 8999999999999764322
Q ss_pred CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV 275 (294)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~ 275 (294)
......++.++|.+ ++.++.+++++.++++.|.+++++.+||+++|+++|+||..|+++.+
T Consensus 143 --------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~ 203 (280)
T 3kh5_A 143 --------------KIDENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLL 203 (280)
T ss_dssp --------------GSCTTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred --------------cCCCCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 01122468899977 89999999999999999999999999999999999999999999554
No 5
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.95 E-value=6.6e-27 Score=201.60 Aligned_cols=212 Identities=21% Similarity=0.246 Sum_probs=156.5
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
.+.+++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..+.++......+++++|..+++
T Consensus 58 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~ 137 (282)
T 2yzq_A 58 DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVS 137 (282)
T ss_dssp ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCC
T ss_pred ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCE
Confidence 46789999999999999999999999999999999999999889999999999997513332222335678999988899
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH------HHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL------YDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
++++++++.++++.|.+++++.+||++ +|+++|+++..|++ +...... . .+. ....+.. .
T Consensus 138 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~--~-----~~~---~~~~~~~---~ 204 (282)
T 2yzq_A 138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE--L-----AAS---SEEEWIL---E 204 (282)
T ss_dssp CEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-------------------------------
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccch--h-----hhh---hhhhhhc---c
Confidence 999999999999999999999999999 89999999999998 3221000 0 000 0000000 0
Q ss_pred CChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
.....+...........++.++|.+ ++.++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~ 277 (282)
T 2yzq_A 205 SHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 277 (282)
T ss_dssp --------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred cchHHHHhHhhhhhccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHH
Confidence 0011111122233456789999977 999999999999999999999999999999 57999999999999543
No 6
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.94 E-value=1.7e-25 Score=196.59 Aligned_cols=190 Identities=16% Similarity=0.236 Sum_probs=157.0
Q ss_pred hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHHHcC--CCCcccccccc---
Q 041090 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANAL-----LSGIVTDKDITTRVIAEG--LRPDQTVVSKI--- 122 (294)
Q Consensus 53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~-----~~Givt~~di~~~~~~~~--~~~~~~~v~~~--- 122 (294)
+.++|.++++++++++++.+|++.|.+++++.+||+|+++. ++|++|.+|+++.+.... ......+++++
T Consensus 116 ~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~ 195 (323)
T 3t4n_C 116 ALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNII 195 (323)
T ss_dssp HTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCS
T ss_pred HhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCC
Confidence 44556789999999999999999999999999999998775 999999999987665432 22334588999
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
|..+++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+.....
T Consensus 196 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~------------------------ 251 (323)
T 3t4n_C 196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY------------------------ 251 (323)
T ss_dssp BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHH------------------------
T ss_pred CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchh------------------------
Confidence 888899999999999999999999999999999 8999999999999876433110
Q ss_pred CChhhhHHHHHHhhcccchhhhhhcCC----ceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITENA----KVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
.....++.++|.... +++++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.++
T Consensus 252 ------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~ 319 (323)
T 3t4n_C 252 ------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319 (323)
T ss_dssp ------------HHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred ------------hhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence 012357888886522 689999999999999999999999999999 899999999999997766
Q ss_pred Hc
Q 041090 277 AQ 278 (294)
Q Consensus 277 ~~ 278 (294)
..
T Consensus 320 ~~ 321 (323)
T 3t4n_C 320 LG 321 (323)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 7
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.93 E-value=3.3e-26 Score=197.20 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=137.9
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
++|+++|.++++++++++|+.+|+++|.+++++.+||+|++|+++|+++.+|++..+ ...+++++|.++++++
T Consensus 1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-------~~~~v~~~m~~~~~~v 73 (282)
T 2yzq_A 1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP-------DEEQLAMLVKRDVPVV 73 (282)
T ss_dssp CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEE
T ss_pred CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-------ccCCHHHHcCCCCcEE
Confidence 478999999999999999999999999999999999999889999999999997432 2467899998888999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH-HHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY-DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFI 208 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 208 (294)
.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++ .+...
T Consensus 74 ~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~--------------------------------- 120 (282)
T 2yzq_A 74 KENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS--------------------------------- 120 (282)
T ss_dssp ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC---------------------------------
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc---------------------------------
Confidence 9999999999999999999999999 789999999999976 32210
Q ss_pred HHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090 209 ETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 209 ~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
......++.++|.. +++++.+++++.++++.|.+++++.+||+| +|+++|+||..|++
T Consensus 121 ----~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 121 ----EKYKGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179 (282)
T ss_dssp ----SGGGGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred ----CCcccCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence 01123568899966 899999999999999999999999999999 89999999999998
No 8
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.93 E-value=1.7e-25 Score=196.62 Aligned_cols=209 Identities=13% Similarity=0.177 Sum_probs=163.8
Q ss_pred cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHH---cCCC------Ccc
Q 041090 49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIA---EGLR------PDQ 116 (294)
Q Consensus 49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~---~~~~------~~~ 116 (294)
++.++.|+|.+ ++++++.++|+.+|++.|.+++++.+||+|++ ++++|++|..|++..+.. .... ...
T Consensus 28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~ 107 (323)
T 3t4n_C 28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQL 107 (323)
T ss_dssp HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBH
T ss_pred HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 67889999998 77889999999999999999999999999975 499999999999865432 1100 001
Q ss_pred ccc------ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCE-----EEEEEehHHHHHHHHHHHHHHHhhch
Q 041090 117 TVV------SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGE-----VIAILDITKCLYDAISRMEKAAEQGS 184 (294)
Q Consensus 117 ~~v------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~-----~vGivt~~dll~~~~~~~~~~~~~~~ 184 (294)
..+ .++|.++++++++++++.++++.|.+++++++||++ ++. ++|++|..|+++........
T Consensus 108 ~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------ 181 (323)
T 3t4n_C 108 DGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------ 181 (323)
T ss_dssp HHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------
T ss_pred HHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------
Confidence 122 234467888999999999999999999999999999 664 99999999998765431100
Q ss_pred hHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhh---hhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CC
Q 041090 185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTI---ITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GS 260 (294)
Q Consensus 185 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g 260 (294)
......++.++ |.+ ++.++.+++++.+|+++|.+++++++||+| +|
T Consensus 182 ----------------------------~~~~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~ 231 (323)
T 3t4n_C 182 ----------------------------THFLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG 231 (323)
T ss_dssp ----------------------------GGGCCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred ----------------------------hhhhhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 12344678888 866 899999999999999999999999999999 79
Q ss_pred eEeEeeehhHHHHHHHHccCCCCcceeeecccc
Q 041090 261 KIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293 (294)
Q Consensus 261 ~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~~~ 293 (294)
+++|+||.+|+++.+..........+|+++|++
T Consensus 232 ~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~ 264 (323)
T 3t4n_C 232 YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 264 (323)
T ss_dssp BEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred eEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence 999999999999554332223446688888864
No 9
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.92 E-value=1.9e-24 Score=190.77 Aligned_cols=207 Identities=16% Similarity=0.180 Sum_probs=162.3
Q ss_pred cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHc---CCCCc------c
Q 041090 49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAE---GLRPD------Q 116 (294)
Q Consensus 49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~---~~~~~------~ 116 (294)
...+|+|+|.+ +++++++++|+.+|++.|.+++++.+||+|++ ++++|+++.+|++..+... ..... .
T Consensus 20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~ 99 (334)
T 2qrd_G 20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK 99 (334)
T ss_dssp HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGS
T ss_pred hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhh
Confidence 35889999987 57889999999999999999999999999976 8999999999998654321 00110 2
Q ss_pred ccccc-------ccccCC--eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC-E----EEEEEehHHHHHHHHHHHHHHHh
Q 041090 117 TVVSK-------IMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVE-NG-E----VIAILDITKCLYDAISRMEKAAE 181 (294)
Q Consensus 117 ~~v~~-------~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~----~vGivt~~dll~~~~~~~~~~~~ 181 (294)
.++.. +|..++ +++.+++++.++++.|.+++++++||++ ++ + ++|++|..|+++.......
T Consensus 100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~---- 175 (334)
T 2qrd_G 100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK---- 175 (334)
T ss_dssp CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----
T ss_pred hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----
Confidence 22333 345556 8899999999999999999999999998 54 4 9999999999876443100
Q ss_pred hchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhh---hhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090 182 QGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLST---IITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258 (294)
Q Consensus 182 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~---im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (294)
.......++.+ +|.+ ++.++.+++++.+|+++|.+++++++||+|
T Consensus 176 ------------------------------~~~~~~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd 223 (334)
T 2qrd_G 176 ------------------------------ETAMLRVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVN 223 (334)
T ss_dssp ------------------------------GGGGCCCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred ------------------------------chhhhhCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEc
Confidence 00123456777 4766 899999999999999999999999999999
Q ss_pred -CCeEeEeeehhHHHHHHHHccC-CCCcceeeeccc
Q 041090 259 -GSKIQGILTSKDVLMRVVAQNL-SPELTLVERFIM 292 (294)
Q Consensus 259 -~g~~vGivt~~Dil~~~~~~~~-~~~~~~v~~~~~ 292 (294)
+|+++|+||..|+++. +..+. .....++.++|+
T Consensus 224 ~~~~~~Giit~~dl~~~-~~~~~~~~~~~~v~~~m~ 258 (334)
T 2qrd_G 224 SEGTLLNVYESVDVMHL-IQDGDYSNLDLSVGEALL 258 (334)
T ss_dssp TTCBEEEEEETHHHHHH-HTTSCGGGGGSBHHHHHT
T ss_pred CCCcEEEEEEHHHHHHH-hhccccccccCcHHHHHh
Confidence 7899999999999954 44332 344567888886
No 10
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.92 E-value=4e-24 Score=188.47 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=153.7
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCC-----Ccccccccc--c
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLR-----PDQTVVSKI--M 123 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~-----~~~~~v~~~--~ 123 (294)
+++++|.++++++.+++++.+|++.|.+++++.+||+|+ +|+++|++|.+|+++++...... ....++.++ |
T Consensus 119 ~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~ 198 (330)
T 2v8q_E 119 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIG 198 (330)
T ss_dssp HHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCS
T ss_pred HHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhccc
Confidence 356788999999999999999999999999999999998 89999999999998666443211 112344454 4
Q ss_pred c-cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 124 T-RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 124 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
. .+++++.+++++.++++.|.+++++++||++ +|+++|+++..|+++..... +.
T Consensus 199 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~----------------------~~-- 254 (330)
T 2v8q_E 199 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK----------------------TY-- 254 (330)
T ss_dssp BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS----------------------CC--
T ss_pred CcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcc----------------------cc--
Confidence 3 6788899999999999999999999999999 89999999999997532110 00
Q ss_pred CChhhhHHHHHHhhcccchhhhhhc----CCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITE----NAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
.....++.++|.. ..++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.+.
T Consensus 255 ------------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~ 322 (330)
T 2v8q_E 255 ------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 322 (330)
T ss_dssp ------------CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred ------------ccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 0013467777741 13899999999999999999999999999999 699999999999996554
Q ss_pred H
Q 041090 277 A 277 (294)
Q Consensus 277 ~ 277 (294)
.
T Consensus 323 ~ 323 (330)
T 2v8q_E 323 L 323 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 11
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.92 E-value=3.2e-24 Score=189.15 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=164.3
Q ss_pred cccchhccc--cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcC-------CCCcccc
Q 041090 49 GERTVKKLR--LSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEG-------LRPDQTV 118 (294)
Q Consensus 49 ~~~~v~dl~--~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~-------~~~~~~~ 118 (294)
.+.+|+|+| ..+++++++++|+.+|++.|.+++++++||++++ ++++|++|.+|++..+.... .......
T Consensus 33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~ 112 (330)
T 2v8q_E 33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHK 112 (330)
T ss_dssp HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhcc
Confidence 567999999 6689999999999999999999999999999987 79999999999986543211 0111122
Q ss_pred -------cccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090 119 -------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA 189 (294)
Q Consensus 119 -------v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~ 189 (294)
++++|.++++++++++++.++++.|.+++++++||++ +|+++|++|..|+++.......
T Consensus 113 ~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~------------ 180 (330)
T 2v8q_E 113 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT------------ 180 (330)
T ss_dssp HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhh------------
Confidence 3456788899999999999999999999999999998 6899999999999875432100
Q ss_pred HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhh--hhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090 190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTI--ITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL 266 (294)
Q Consensus 190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv 266 (294)
..... .....++.++ |. ..++.++.+++++.++++.|.+++++++||+| +|+++|+|
T Consensus 181 --------~~~~~-----------~~~~~~v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii 240 (330)
T 2v8q_E 181 --------EFPKP-----------EFMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240 (330)
T ss_dssp --------SSSCC-----------GGGGSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE
T ss_pred --------ccCch-----------hhhcCCHHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE
Confidence 00000 0122345555 43 03789999999999999999999999999999 89999999
Q ss_pred ehhHHHHHHHHccCCCCcceeeecc
Q 041090 267 TSKDVLMRVVAQNLSPELTLVERFI 291 (294)
Q Consensus 267 t~~Dil~~~~~~~~~~~~~~v~~~~ 291 (294)
|..|+++.+..........++.++|
T Consensus 241 t~~dl~~~~~~~~~~~~~~~v~~~~ 265 (330)
T 2v8q_E 241 SKFDVINLAAEKTYNNLDVSVTKAL 265 (330)
T ss_dssp EGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred EHHHHHHHHhccccccccCcHHHHH
Confidence 9999995544333444456788887
No 12
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.91 E-value=2.5e-23 Score=183.67 Aligned_cols=188 Identities=13% Similarity=0.199 Sum_probs=153.7
Q ss_pred ccccCCc--eeecCCCCHHHHHHHHHhCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHHHcCC--CCccccccc---c
Q 041090 55 KLRLSKA--LTIPEGTIVSDACRRMASRRVDAVLLTDANA-L----LSGIVTDKDITTRVIAEGL--RPDQTVVSK---I 122 (294)
Q Consensus 55 dl~~~~~--~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~-~----~~Givt~~di~~~~~~~~~--~~~~~~v~~---~ 122 (294)
++|.+++ +++.+++++.+|++.|.+++++.+||+|++| + ++|++|.+|+++.+..... .....++++ +
T Consensus 111 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~ 190 (334)
T 2qrd_G 111 KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIG 190 (334)
T ss_dssp HHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCS
T ss_pred hhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCc
Confidence 4566766 9999999999999999999999999999765 4 9999999999866553211 112456778 4
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF 201 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (294)
|..+++++.+++++.++++.|.+++++.+||++ +|+++|++|..|+++......
T Consensus 191 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~------------------------- 245 (334)
T 2qrd_G 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD------------------------- 245 (334)
T ss_dssp BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC-------------------------
T ss_pred ccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc-------------------------
Confidence 788889999999999999999999999999999 889999999999986532200
Q ss_pred CChhhhHHHHHHhhcccchhhhhhcC----CceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSLSTIITEN----AKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
......++.++|... .++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.+.
T Consensus 246 -----------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~ 314 (334)
T 2qrd_G 246 -----------YSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII 314 (334)
T ss_dssp -----------GGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred -----------cccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHH
Confidence 001235678888621 2789999999999999999999999999999 799999999999996555
Q ss_pred Hc
Q 041090 277 AQ 278 (294)
Q Consensus 277 ~~ 278 (294)
..
T Consensus 315 ~~ 316 (334)
T 2qrd_G 315 YD 316 (334)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.87 E-value=1.1e-22 Score=162.31 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=111.5
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC---------------
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG--------------- 111 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~--------------- 111 (294)
..++++|+|+|+++++++.+++|+.+|++.|.+++++++||+|++|+++|+||.+|+++......
T Consensus 14 ~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T 4esy_A 14 AIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP 93 (170)
T ss_dssp HHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred HHcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence 34678999999999999999999999999999999999999999999999999999864321100
Q ss_pred ------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 112 ------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 112 ------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
......+++++|.++++++.+++++.+++++|.+++++++||+++|+++|+||..|+++++..
T Consensus 94 ~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 94 EVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp HHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSCC
T ss_pred hHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence 011245789999999999999999999999999999999999999999999999999876543
No 14
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.86 E-value=1.6e-20 Score=158.58 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=136.7
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC--------------
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR-------------- 113 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~-------------- 113 (294)
....+|+|+|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+......
T Consensus 4 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~ 83 (245)
T 3l2b_A 4 MVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL 83 (245)
T ss_dssp CCCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred cccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence 346789999999999999999999999999999999999999999999999999998665432110
Q ss_pred -------------------------CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHH
Q 041090 114 -------------------------PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKC 168 (294)
Q Consensus 114 -------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dl 168 (294)
.....+.+.+....+.+-.+ -.++...+.+.++..++++++..+ ..++
T Consensus 84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~-----~~~v 156 (245)
T 3l2b_A 84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTP-----SKEI 156 (245)
T ss_dssp HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCC-----CHHH
T ss_pred HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCC-----CHHH
Confidence 00111222222333333333 256666667777777666542211 1122
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC-CCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHH
Q 041090 169 LYDAISRMEKAAEQGSAIAAAVEGVERQWGSN-FSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKM 246 (294)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m 246 (294)
+ ......+.. +....+.+..........++.++|. + ++.++.+++++.+|+++|
T Consensus 157 ~----------------------~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m 212 (245)
T 3l2b_A 157 I----------------------ELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKD--NLVAVSTDDLVEDVKVTM 212 (245)
T ss_dssp H----------------------HHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCT--TCCCEETTSBHHHHHHHH
T ss_pred H----------------------HHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCC--ccEEECCCCcHHHHHHHH
Confidence 1 112222222 3344455555556666788999998 5 899999999999999999
Q ss_pred HHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 247 REFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 247 ~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
.+++++++||+| +|+++|+||++|+++.
T Consensus 213 ~~~~~~~~pVvd~~~~~~Giit~~dll~~ 241 (245)
T 3l2b_A 213 SETRYSNYPVIDENNKVVGSIARFHLIST 241 (245)
T ss_dssp HHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred HhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence 999999999999 7999999999999944
No 15
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.85 E-value=1.1e-21 Score=156.51 Aligned_cols=145 Identities=24% Similarity=0.300 Sum_probs=114.1
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+|+++|.++++++.+++++.+|++.|.+++++.+||+| +|+++|+||..|+++.......... .
T Consensus 17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~-------------~ 83 (170)
T 4esy_A 17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEA-------------S 83 (170)
T ss_dssp TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHH-------------H
T ss_pred CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccch-------------h
Confidence 5789999999999999999999999999999999999999 8999999999999864322111000 0
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR 274 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~ 274 (294)
.... ............+.....++.++|.+ +++++.+++++.+|+++|.+++++++||+|+|+++|+||+.||++.
T Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~ 159 (170)
T 4esy_A 84 EILS--RAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKL 159 (170)
T ss_dssp HHHT--TTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTT
T ss_pred hhhh--hccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHH
Confidence 0000 00111122233344456789999977 9999999999999999999999999999999999999999999965
Q ss_pred HHH
Q 041090 275 VVA 277 (294)
Q Consensus 275 ~~~ 277 (294)
++.
T Consensus 160 l~~ 162 (170)
T 4esy_A 160 LLL 162 (170)
T ss_dssp SCC
T ss_pred HHh
Confidence 543
No 16
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.85 E-value=2e-20 Score=145.66 Aligned_cols=123 Identities=17% Similarity=0.264 Sum_probs=112.4
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
.+...+|+|+|.+ +++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.... ..+++++|
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m 94 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL 94 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc
Confidence 5678999999999 99999999999999999999999999999987 89999999999986654433 56899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus 95 -~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 95 -RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp -BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred -CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 8889999999999999999999999999999 7999999999999987664
No 17
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=4e-20 Score=146.70 Aligned_cols=128 Identities=29% Similarity=0.448 Sum_probs=115.5
Q ss_pred CCcccchhccccC---CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS---KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~---~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
....++|+|+|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+..........++.++|
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m 99 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAM 99 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTS
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHh
Confidence 4577999999996 7999999999999999999999999999999999999999999987766554334467899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
.++++++.+++++.++++.|.+++++++||+++|+++|+||..|+++++..
T Consensus 100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIG 150 (165)
T ss_dssp BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987554
No 18
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.83 E-value=3.2e-20 Score=141.47 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=107.6
Q ss_pred ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
+++|+|+|++ +++++++++++.+|++.|.+++++.+||+++ +|+++|++|.+|+++.+ .++......++.++| ++
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~-~~~~~~~~~~v~~~m-~~ 78 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM-TEKKEFTKEIMLRAA-DE 78 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHH-TSSSCCCHHHHHHHS-BC
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHH-hccCccchhhHHHhc-cC
Confidence 3689999975 7899999999999999999999999999975 58999999999997544 343334456789998 67
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++.+..
T Consensus 79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence 88999999999999999999999999999 8999999999999987654
No 19
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.83 E-value=1.6e-19 Score=138.68 Aligned_cols=126 Identities=28% Similarity=0.423 Sum_probs=112.8
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
.+...+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.++.++. ....++.++|.++
T Consensus 3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~ 81 (138)
T 2yzi_A 3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN 81 (138)
T ss_dssp CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence 456789999999999999999999999999999999999999988999999999999755544443 3367899999999
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++++.+++++.++++.|.+++++++ |++ +|+++|++|..|+++.+..
T Consensus 82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999 999 9999999999999876543
No 20
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.83 E-value=6.7e-20 Score=144.15 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=108.0
Q ss_pred ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC---Ccccccccccc
Q 041090 50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR---PDQTVVSKIMT 124 (294)
Q Consensus 50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~---~~~~~v~~~~~ 124 (294)
..+++++|++ +++++.+++|+.+|+++|.+++++++||+|++|+++|++|.+|+++++...... ....+++++|.
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~ 93 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTK 93 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCB
T ss_pred hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhc
Confidence 3578899986 899999999999999999999999999999999999999999998776655432 23568999999
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++++++++++++.++++.|.+++ .+||+| +|+++|+||..|+++++..
T Consensus 94 ~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 94 TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp CSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred CCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence 99999999999999999998765 489999 8999999999999987654
No 21
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.83 E-value=1.2e-19 Score=145.10 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=107.8
Q ss_pred CCcccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
.+...+|+++|. .+++++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|+++... ++ ...+++++|
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-~~---~~~~v~~im 113 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI-AG---ERLELVDLV 113 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH-TT---CCCCGGGGC
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh-hc---CcccHHHHh
Confidence 578899999999 688999999999999999999999999999987 99999999999986543 22 156899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++++++.+++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus 114 -~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 114 -KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp -BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred -cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 8999999999999999999999999999999 7999999999999987665
No 22
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.83 E-value=1.1e-19 Score=139.12 Aligned_cols=123 Identities=30% Similarity=0.464 Sum_probs=111.8
Q ss_pred cchhcccc---CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 51 RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 51 ~~v~dl~~---~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.+|+++|. ++++++++++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.+..++......++.++|.+++
T Consensus 6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~ 84 (135)
T 2rc3_A 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV 84 (135)
T ss_dssp CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCC
Confidence 38999999 8999999999999999999999999999999 8999999999999765655554455788999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
+++.+++++.++++.|.+++++.+||+|+|+++|++|..|+++++..
T Consensus 85 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 85 AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp CCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred eEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHh
Confidence 99999999999999999999999999998999999999999987544
No 23
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.83 E-value=1.4e-19 Score=140.96 Aligned_cols=138 Identities=17% Similarity=0.331 Sum_probs=110.3
Q ss_pred EEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHH
Q 041090 96 GIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYD 171 (294)
Q Consensus 96 Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~ 171 (294)
|.++..+ +.++.........+++++|.+ +++++++++++.++++.|.+++++++||++ + |+++|++|..|+++.
T Consensus 4 g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~ 81 (148)
T 3lv9_A 4 GLIDESE--QRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ 81 (148)
T ss_dssp ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred CccCHHH--HHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence 4555444 233444455667899999998 899999999999999999999999999999 5 899999999999875
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCC
Q 041090 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRS 251 (294)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~ 251 (294)
.... ...++.++| + ++.++.+++++.+|+++|.++++
T Consensus 82 ~~~~----------------------------------------~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~ 118 (148)
T 3lv9_A 82 KINE----------------------------------------NKIELEEIL-R--DIIYISENLTIDKALERIRKEKL 118 (148)
T ss_dssp HHHH----------------------------------------SCCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTC
T ss_pred HhcC----------------------------------------CCccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCC
Confidence 4331 146789999 6 79999999999999999999999
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHc
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQ 278 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~ 278 (294)
+.+||+| +|+++|+||+.|+++.++.+
T Consensus 119 ~~l~Vvd~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 119 QLAIVVDEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp SEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred eEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence 9999999 69999999999999777653
No 24
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.83 E-value=1.1e-19 Score=136.52 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=107.3
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
.+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+++.+.. + ..+++++|.++++++
T Consensus 1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-~----~~~v~~~~~~~~~~v 75 (122)
T 3kpb_A 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ-N----KKTIEEIMTRNVITA 75 (122)
T ss_dssp CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT-T----CCBGGGTSBSSCCCE
T ss_pred CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh-c----ccCHHHHhcCCCeEE
Confidence 46899999999999999999999999999999999999999999999999999755432 2 238999999999999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
.+++++.++++.|.+++.+++||+| +|+++|++|..|+++++.
T Consensus 76 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 76 HEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp ETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence 9999999999999999999999999 699999999999988654
No 25
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.83 E-value=1.5e-19 Score=136.35 Aligned_cols=122 Identities=24% Similarity=0.303 Sum_probs=109.1
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
++|+++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++.+|+++. +.++......++.++|.+++.++
T Consensus 1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~-~~~~~~~~~~~v~~~m~~~~~~v 78 (125)
T 1pbj_A 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEA-IAEGDDLAEVKVWEVMERDLVTI 78 (125)
T ss_dssp -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHH-HHHTCCTTTSBHHHHCBCGGGEE
T ss_pred CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHH-HhcCCcccccCHHHHcCCCCeEE
Confidence 478999999999999999999999999999999999999 8999999999999744 44444444678999999899999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
.+++++.++++.|.+++++++||+++|+++|++|..|+++.+..
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 79 SPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA 122 (125)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence 99999999999999999999999998999999999999886543
No 26
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.82 E-value=2.4e-19 Score=141.52 Aligned_cols=128 Identities=21% Similarity=0.198 Sum_probs=112.4
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHc-------CCCCccccccc
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE-------GLRPDQTVVSK 121 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~-------~~~~~~~~v~~ 121 (294)
..++|+++|.++++++.+++|+.+|++.|.+++++.+||+|++|+++|+||.+||++.+... .......++.+
T Consensus 3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (160)
T 2o16_A 3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE 82 (160)
T ss_dssp CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH
Confidence 45789999999999999999999999999999999999999889999999999998665431 11223568999
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHH
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRM 176 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~ 176 (294)
+|.++++++.+++++.++++.|.+.+++.+||+++|+++|+||..|+++.+....
T Consensus 83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~ 137 (160)
T 2o16_A 83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL 137 (160)
T ss_dssp HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence 9998999999999999999999999999999999999999999999998766543
No 27
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.82 E-value=3.5e-20 Score=141.49 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=110.6
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
+..+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.++.++......+++++|.++++
T Consensus 6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~ 85 (133)
T 1y5h_A 6 TMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY 85 (133)
T ss_dssp --CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred hhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence 45699999999999999999999999999999999999998889999999999997445545444446789999998999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~ 172 (294)
++++++++.++++.|.+++.+++||+++|+++|++|..|+++++
T Consensus 86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 86 YVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 129 (133)
T ss_dssp CEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 99999999999999999999999999988999999999998754
No 28
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.82 E-value=8.3e-20 Score=138.89 Aligned_cols=121 Identities=12% Similarity=0.193 Sum_probs=105.8
Q ss_pred Ccccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090 48 GGERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124 (294)
Q Consensus 48 ~~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 124 (294)
+.+.+|+|+|. ++++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+. ....+++++|.
T Consensus 2 ~~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----~~~~~v~~~m~ 76 (129)
T 3jtf_A 2 NAERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----EPALDIRSLVR 76 (129)
T ss_dssp --CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----CTTSCGGGGCB
T ss_pred CCCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----cCCcCHHHHhC
Confidence 46789999999 678999999999999999999999999999985 89999999999975432 12567899985
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.+..
T Consensus 77 -~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 77 -PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp -CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred -CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 578999999999999999999999999999 7999999999999987664
No 29
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.82 E-value=5.1e-20 Score=140.24 Aligned_cols=123 Identities=11% Similarity=0.200 Sum_probs=105.0
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
.+.+.+|+|+|.+ +++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.. +. ...+++++|
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-~~--~~~~v~~~m 78 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS-GS--GQKQLGAVM 78 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT-TT--TTSBHHHHS
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc-CC--CcCCHHHHh
Confidence 4577899999995 56789999999999999999999999999987 899999999999855433 22 256899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
.+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.+.
T Consensus 79 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 79 -RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp -EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred -cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence 4678999999999999999999999999999 799999999999998754
No 30
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.82 E-value=3e-20 Score=140.91 Aligned_cols=120 Identities=12% Similarity=0.247 Sum_probs=105.0
Q ss_pred ccchhccccCC--ceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 50 ERTVKKLRLSK--ALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 50 ~~~v~dl~~~~--~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
+.+|+|+|.+. ++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.. . ....+++++|.+
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-~--~~~~~v~~~m~~- 77 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-D--AEAFSMDKVLRT- 77 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-T--CCCCCHHHHCBC-
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-c--CCCCCHHHHcCC-
Confidence 57899999965 9999999999999999999999999999987 899999999999754322 1 235689999954
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++.+.
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 78 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 77899999999999999999999999999 899999999999998654
No 31
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.82 E-value=2.8e-19 Score=136.47 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=110.9
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
.+.+|+++|.++++++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++. +.++... ..++.++|.+++.
T Consensus 2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~-~~~~~~~-~~~v~~~~~~~~~ 78 (133)
T 2ef7_A 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKA-IGKGKSL-ETKAEEFMTASLI 78 (133)
T ss_dssp CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH-HHTTCCT-TCBGGGTSEECCC
T ss_pred CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHH-HhcCCCc-ccCHHHHcCCCCE
Confidence 45789999999999999999999999999999999999999 8999999999999744 4443332 5789999988999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
++++++++.++++.|.+++.+++||++ +|+++|++|..|+++.+...
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 999999999999999999999999999 89999999999999876653
No 32
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.82 E-value=7e-20 Score=143.50 Aligned_cols=124 Identities=13% Similarity=0.196 Sum_probs=110.7
Q ss_pred CcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 48 GGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLT-DA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 48 ~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~-d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
+...+|+++|.+ +++++++++++.+|++.|.+++++.+||+ ++ +|+++|++|.+|+++.+.... ..+++++|
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m 92 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM 92 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh
Confidence 467899999997 89999999999999999999999999999 65 489999999999986655432 56899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM 176 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~ 176 (294)
++++++.+++++.++++.|.+++++.+||++ +|+++|+||..|+++.+...+
T Consensus 93 -~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 93 -RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL 145 (153)
T ss_dssp -BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred -CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence 8999999999999999999999999999999 799999999999999877643
No 33
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.82 E-value=1.9e-19 Score=140.27 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=109.4
Q ss_pred cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
..++|+|+|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++ .+.++......+++++|.++
T Consensus 26 l~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~v~~~m~~~ 104 (149)
T 3k2v_A 26 LLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRR-VFDTGVDMRDASIADVMTRG 104 (149)
T ss_dssp TTSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHH-HHCSSSCCTTCBHHHHSEES
T ss_pred cccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHH-HHhcCCCcccCcHHHHcCCC
Confidence 34699999999 9999999999999999999999999999999999999999999974 44444444578999999999
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~ 170 (294)
++++.+++++.++++.|.+++++.+||+|+++++|+||..|+++
T Consensus 105 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~ 148 (149)
T 3k2v_A 105 GIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLR 148 (149)
T ss_dssp CCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTC
T ss_pred CeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhc
Confidence 99999999999999999999999999999669999999999864
No 34
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.82 E-value=4e-20 Score=141.99 Aligned_cols=123 Identities=14% Similarity=0.203 Sum_probs=106.1
Q ss_pred ccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090 50 ERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 50 ~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
+.+|+++|. ++++++.+++|+.+|++.|.+++++.+||++++ |+++|++|.+|+++.+. ++ .....+++++|.+
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~-~~-~~~~~~v~~~m~~- 78 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL-KA-DGDSDDVKKLLRP- 78 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG-SS-SGGGCCGGGTCBC-
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH-hc-cCCCcCHHHHcCC-
Confidence 578999999 578999999999999999999999999999987 89999999999975432 22 2236689999965
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
++++.+++++.++++.|.+++++.+||+| +|+++|+||..|+++.+...
T Consensus 79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 79 ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 88999999999999999999999999999 89999999999999876653
No 35
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.81 E-value=4.5e-19 Score=139.76 Aligned_cols=127 Identities=24% Similarity=0.301 Sum_probs=112.3
Q ss_pred CCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc
Q 041090 46 GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR 125 (294)
Q Consensus 46 ~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~ 125 (294)
.....++|+++|.+ ++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.++ .+......++.++|.+
T Consensus 12 ~~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~~m~~ 89 (159)
T 3fv6_A 12 DKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI-GQQELTSVPVHIIMTR 89 (159)
T ss_dssp HHHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT-SCSCTTTCBGGGTSEE
T ss_pred HHHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh-ccCcccCcCHHHHHcC
Confidence 34567899999997 459999999999999999999999999999999999999999975543 3334446789999988
Q ss_pred --CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC---EEEEEEehHHHHHHHHH
Q 041090 126 --NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NG---EVIAILDITKCLYDAIS 174 (294)
Q Consensus 126 --~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~---~~vGivt~~dll~~~~~ 174 (294)
+++++.+++++.++++.|.+++++++||++ +| +++|+||..|+++++.+
T Consensus 90 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 889999999999999999999999999999 77 99999999999987665
No 36
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.81 E-value=1.2e-19 Score=137.71 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=108.5
Q ss_pred cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090 49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128 (294)
Q Consensus 49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (294)
..++++++|.++++++.+++++.+|++.|.+++++.+||+|+ |+++|++|.+|+++.+ .++. ....+++++|.+++.
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~-~~~~-~~~~~v~~~m~~~~~ 79 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGR-KGWP-TVKEKLGEELLETVR 79 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTC-SSSC-CTTCBCCGGGCBCCC
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHH-hhCC-cccCcHHHHccCCCc
Confidence 468899999999999999999999999999999999999998 9999999999997432 2221 123679999999999
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+.
T Consensus 80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 999999999999999999999999998 899999999999988654
No 37
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.81 E-value=3.6e-19 Score=147.19 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=106.2
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
.+++++|.++++++.+++|+.+|+++|.+++++.+||+|++++++|++|.+|+++. ....+++++|.++++++
T Consensus 13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-------~~~~~v~~im~~~~~~v 85 (213)
T 1vr9_A 13 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSVFNKVSLPDFFV 85 (213)
T ss_dssp CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-------CTTSBSGGGCBCTTCCE
T ss_pred cCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-------cCCCcHHHHccCCCEEE
Confidence 46799999999999999999999999999999999999988999999999999632 12468999999999999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE 209 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 209 (294)
.+++++.++++.|.+++++++||+| +|+++|++|..|+++.....
T Consensus 86 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~---------------------------------- 131 (213)
T 1vr9_A 86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA---------------------------------- 131 (213)
T ss_dssp ETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS----------------------------------
T ss_pred CCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH----------------------------------
Confidence 9999999999999999999999999 69999999999998754321
Q ss_pred HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090 210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258 (294)
Q Consensus 210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (294)
....+.+.+ -.+.+.....++.++.+.|.+++++.++|++
T Consensus 132 --------~~~~~~~~~-l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~ 171 (213)
T 1vr9_A 132 --------LAMDVPGIR-FSVLLEDKPGELRKVVDALALSNINILSVIT 171 (213)
T ss_dssp --------CC---------------------------------------
T ss_pred --------hcCCCCcEE-EEEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence 011122211 0111113344599999999999999999876
No 38
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.81 E-value=5.1e-19 Score=136.49 Aligned_cols=122 Identities=23% Similarity=0.341 Sum_probs=109.0
Q ss_pred ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090 50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANA--LLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127 (294)
Q Consensus 50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~--~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~ 127 (294)
.++|+++|.++++++.+++++.+|++.|.+++++.+||+|+++ +++|++|.+|+++.+ .++... ..++.++|.+++
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~-~~~~~~-~~~v~~~m~~~~ 81 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV-AQRLDL-DGPAMPIANSPI 81 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHH-HTTCCT-TSBSGGGCBCCC
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHH-hcCCCC-CCCHHHHcCCCC
Confidence 3689999999999999999999999999999999999999888 999999999997544 343333 578999999999
Q ss_pred eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
+++.++ ++.++++.|.+++++++||+| +|+++|++|..|+++....
T Consensus 82 ~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 82 TVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp EEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred eEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence 999999 999999999999999999999 8999999999999876543
No 39
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.81 E-value=5.5e-19 Score=138.91 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=113.4
Q ss_pred CCCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHHHc-------------
Q 041090 45 GGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDA-VLLTDANALLSGIVTDKDITTRVIAE------------- 110 (294)
Q Consensus 45 ~~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~-lpV~d~~~~~~Givt~~di~~~~~~~------------- 110 (294)
++.+...+|+++|.++++++.+++|+.+|++.|.+++++. +||+|++ +++|++|.+|+++.+...
T Consensus 10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~ 88 (157)
T 1o50_A 10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88 (157)
T ss_dssp CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHH
Confidence 4578899999999999999999999999999999999999 9999987 999999999998654321
Q ss_pred -CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 111 -GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 111 -~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
.......++.++|.+ ++++.+++++.++++.|.+++++++||+| +|+++|+||..|+++.+.+
T Consensus 89 ~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 89 SMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence 122346789999998 99999999999999999999999999999 8999999999999986543
No 40
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.80 E-value=5.9e-19 Score=140.97 Aligned_cols=140 Identities=16% Similarity=0.312 Sum_probs=105.5
Q ss_pred EEEEEeHHHHHHHHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHH
Q 041090 94 LSGIVTDKDITTRVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCL 169 (294)
Q Consensus 94 ~~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll 169 (294)
-.|+++..+- .++.+...+...+++++|. .+++++++++++.++++.|.+++++++||++ + ++++|+++..|++
T Consensus 21 ~~g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~ 98 (172)
T 3lhh_A 21 SAGVIEHNEH--AMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL 98 (172)
T ss_dssp ------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred HcCCCCHHHH--HHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH
Confidence 3466655442 3333334566789999998 6788999999999999999999999999999 5 8999999999998
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHh
Q 041090 170 YDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREF 249 (294)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~ 249 (294)
..... -...++.++| + +++++.+++++.+|+++|.++
T Consensus 99 ~~~~~----------------------------------------~~~~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~ 135 (172)
T 3lhh_A 99 SESIA----------------------------------------GERLELVDLV-K--NCNFVPNSLSGMELLEHFRTT 135 (172)
T ss_dssp HHHHT----------------------------------------TCCCCGGGGC-B--CCEEEETTCCHHHHHHHHHHH
T ss_pred HHHhh----------------------------------------cCcccHHHHh-c--CCeEeCCCCCHHHHHHHHHHc
Confidence 65322 0136789999 7 899999999999999999999
Q ss_pred CCceeEEee-CCeEeEeeehhHHHHHHHHc
Q 041090 250 RSNSALIVT-GSKIQGILTSKDVLMRVVAQ 278 (294)
Q Consensus 250 ~~~~lpVvd-~g~~vGivt~~Dil~~~~~~ 278 (294)
+++.+||+| +|+++|+||+.||++.++..
T Consensus 136 ~~~~~pVvd~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 136 GSQMVFVVDEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp TCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence 999999999 69999999999999776654
No 41
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.80 E-value=3e-19 Score=139.15 Aligned_cols=127 Identities=22% Similarity=0.364 Sum_probs=109.1
Q ss_pred CcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHc------------CCC
Q 041090 48 GGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE------------GLR 113 (294)
Q Consensus 48 ~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~------------~~~ 113 (294)
++.++|+++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+... ...
T Consensus 2 ~~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~ 81 (152)
T 4gqw_A 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSK 81 (152)
T ss_dssp -CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC---
T ss_pred CceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHH
Confidence 356899999999 899999999999999999999999999999999999999999996321100 012
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
....++.++|.++++++.+++++.++++.|.+++++++||++ +|+++|+||..|+++.+..
T Consensus 82 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 82 TNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp --CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred hccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 235689999999899999999999999999999999999999 8999999999999987655
No 42
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.80 E-value=8.4e-19 Score=134.56 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=109.9
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHHHcCCCCcccccccccccC
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-TTRVIAEGLRPDQTVVSKIMTRN 126 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di-~~~~~~~~~~~~~~~v~~~~~~~ 126 (294)
....+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+ ++.+ ..+ .....++.++|.++
T Consensus 5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~-~~~~~~v~~~m~~~ 82 (138)
T 2p9m_A 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLI-RDK-YTLETTIGDVMTKD 82 (138)
T ss_dssp CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHT-TTC-CCSSCBHHHHSCSS
T ss_pred cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHH-hhc-ccCCcCHHHHhCCC
Confidence 35789999999999999999999999999999999999999988999999999999 7543 222 22367899999989
Q ss_pred CeEEcCCCcHHHHHHHHHhCC-----CcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGK-----FRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
++++.+++++.++++.|.+++ ++.+||++ +|+++|++|..|+++.+.
T Consensus 83 ~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 83 VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 999999999999999999999 99999999 899999999999987654
No 43
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.80 E-value=5.3e-19 Score=138.93 Aligned_cols=124 Identities=27% Similarity=0.455 Sum_probs=110.9
Q ss_pred ccchhcccc------CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 50 ERTVKKLRL------SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 50 ~~~v~dl~~------~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
..+|+|+|. ++++++.+++++.+|++.|.+++++.+||.+ +|+++|++|.+|+++.+..........+++++|
T Consensus 6 ~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m 84 (157)
T 4fry_A 6 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIM 84 (157)
T ss_dssp -CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHS
T ss_pred HHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHc
Confidence 467999999 5569999999999999999999999999965 899999999999987666555554578999999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
.++++++.+++++.++++.|.+++++++||+|+|+++|+++..|+++++..
T Consensus 85 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 85 TAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT
T ss_pred CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 44
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.80 E-value=5.3e-19 Score=137.81 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=110.5
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----CCCcccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----LRPDQTVVS 120 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----~~~~~~~v~ 120 (294)
....++|+++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+||++.+.... ......++.
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~ 90 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVE 90 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGG
T ss_pred hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHH
Confidence 4567899999995 6999999999999999999999999999999999999999999975543211 112356899
Q ss_pred cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
++|.++++++.+++++.++++.|.++++ +||++ +|+++|+||..|+++.+...
T Consensus 91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999998886 99999 89999999999999877654
No 45
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.79 E-value=1.2e-18 Score=134.52 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=107.3
Q ss_pred Ccccchhc---cccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090 48 GGERTVKK---LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124 (294)
Q Consensus 48 ~~~~~v~d---l~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 124 (294)
..+.++++ +|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+++.+..........++.++|.
T Consensus 5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~ 84 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 84 (144)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHh
Confidence 34567788 888999999999999999999999999999999988999999999999765443211233568999887
Q ss_pred c------CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 125 R------NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 125 ~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
+ +++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+..
T Consensus 85 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 85 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred cCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 5 678999999999999999999999999999 8999999999999987643
No 46
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.79 E-value=3.1e-19 Score=143.22 Aligned_cols=126 Identities=27% Similarity=0.388 Sum_probs=109.8
Q ss_pred ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----------------
Q 041090 50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG---------------- 111 (294)
Q Consensus 50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~---------------- 111 (294)
.++|+|+|.+ +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.....+
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW 82 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence 5789999999 8999999999999999999999999999999999999999999963221111
Q ss_pred ----------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 112 ----------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 112 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
......+++++|.++++++.+++++.++++.|.+++++++||++ +|+++|+||..|+++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 01235689999999899999999999999999999999999999 89999999999999987664
No 47
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.79 E-value=1.1e-18 Score=141.02 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=111.4
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
++|+++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+||++.+..........+++++|.++++++
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v 88 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKV 88 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEE
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCcEE
Confidence 78999999999999999999999999999999999999988999999999999865543333344678999999899999
Q ss_pred cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
.+++++.++++.|.+++++.+||+| +|+++|+||..|+++++..
T Consensus 89 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 89 KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp ETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999 6999999999999876543
No 48
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.79 E-value=2.7e-18 Score=135.64 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcCC---CCccccccc
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEGL---RPDQTVVSK 121 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~~---~~~~~~v~~ 121 (294)
.....+|+|+|.++++++.+++++.+|++.|.+++++.+||+|+ +|+++|++|..|+++.+..... .....++.+
T Consensus 9 ~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~ 88 (164)
T 2pfi_A 9 GSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQD 88 (164)
T ss_dssp -CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHH
T ss_pred cccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhh
Confidence 34578899999999999999999999999999999999999996 7999999999999754432211 112457888
Q ss_pred ccccC------CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 122 IMTRN------PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 122 ~~~~~------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
+|... ++++.+++++.++++.|.+++++++||+++|+++|+||..|+++.+..
T Consensus 89 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 89 ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp HHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred hhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence 88766 788999999999999999999999999999999999999999987654
No 49
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.79 E-value=1.5e-18 Score=135.63 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=109.2
Q ss_pred CCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-
Q 041090 46 GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT- 124 (294)
Q Consensus 46 ~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~- 124 (294)
+....++|+++ ++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+..........++.++|.
T Consensus 18 ~~l~~~~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~~ 95 (152)
T 2uv4_A 18 KSLEELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH 95 (152)
T ss_dssp SBHHHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGGT
T ss_pred hhHHHccCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHhh
Confidence 34567788888 788999999999999999999999999999989999999999999765443322233568899996
Q ss_pred -----cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 125 -----RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 125 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
.+++++.+++++.++++.|.+++++++||+| +|+++|+||..|+++.+.
T Consensus 96 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 96 RSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp CCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHC
T ss_pred hhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 7888999999999999999999999999999 799999999999987653
No 50
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.78 E-value=4.4e-18 Score=139.72 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=110.3
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR---RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~---~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 124 (294)
+.+.+|+++|+++++++++++|+.+|++.|.++ +++.+||+|++|+++|++|.+|++. .....+++++|.
T Consensus 51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~-------~~~~~~v~~im~ 123 (205)
T 3kxr_A 51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK-------HEPHEPLISLLS 123 (205)
T ss_dssp SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT-------SCTTSBGGGGCC
T ss_pred CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh-------CCCcchHHHHhc
Confidence 567789999999999999999999999999987 8899999999999999999999963 123578999999
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
++++++++++++.++++.|.+++++.+||+| +|+++|+||..|++..+...
T Consensus 124 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 124 EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH 175 (205)
T ss_dssp SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 8999999999999999999999999999999 89999999999999876553
No 51
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.78 E-value=1.9e-18 Score=138.12 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=107.3
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
.+...+|+++|++ +++++++++++.+|++.|.+++++.+||++++ |+++|+||.+||++.+.... ..++. +
T Consensus 32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~-~- 105 (173)
T 3ocm_A 32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN-R- 105 (173)
T ss_dssp HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG-G-
T ss_pred ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH-h-
Confidence 4678899999984 78999999999999999999999999999986 89999999999986654432 34666 4
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
.++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus 106 ~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 106 LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence 47788999999999999999999999999999 8999999999999987654
No 52
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.78 E-value=3.1e-18 Score=137.99 Aligned_cols=127 Identities=15% Similarity=0.194 Sum_probs=111.6
Q ss_pred CcccchhccccCC----ceee--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHcC--------
Q 041090 48 GGERTVKKLRLSK----ALTI--PEGTIVSDACRRMASRRVDAVLLT--DANALLSGIVTDKDITTRVIAEG-------- 111 (294)
Q Consensus 48 ~~~~~v~dl~~~~----~~~v--~~~~sv~~a~~~~~~~~~~~lpV~--d~~~~~~Givt~~di~~~~~~~~-------- 111 (294)
....+|+|+|.+. ++++ .+++++.+|++.|.+++++.+||+ |++|+++|+||..|+++.+....
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~ 87 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS 87 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence 4578999999987 7888 999999999999999999999999 77899999999999986654321
Q ss_pred ---------------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090 112 ---------------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 112 ---------------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~ 174 (294)
......++.++|.++++++.+++++.++++.|.+++++++||+++|+++|+||..|+++.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~~ 165 (185)
T 2j9l_A 88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQ 165 (185)
T ss_dssp TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHHH
Confidence 112356899999889999999999999999999999999999999999999999999987655
No 53
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.78 E-value=9.5e-19 Score=137.80 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC----CCcccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTVVS 120 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~----~~~~~~v~ 120 (294)
.....+|+++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+..... .....++.
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~ 89 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVE 89 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHH
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHH
Confidence 4567899999998 89999999999999999999999999999999999999999999754432111 13367899
Q ss_pred cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090 121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM 176 (294)
Q Consensus 121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~ 176 (294)
++|.++++++.+++++.++++.|.+.++ +||++ +|+++|+||..|+++.+....
T Consensus 90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 90 EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence 9999999999999999999999998876 99999 899999999999998776543
No 54
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=2.4e-18 Score=136.44 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=110.4
Q ss_pred CCccccccccccc---CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090 113 RPDQTVVSKIMTR---NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188 (294)
Q Consensus 113 ~~~~~~v~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~ 188 (294)
.....+++++|.+ +++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++......
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------ 87 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG------------ 87 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG------------
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC------------
Confidence 3456789999985 688999999999999999999999999999 899999999999987654310
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeeh
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS 268 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~ 268 (294)
......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||.
T Consensus 88 ------------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~ 141 (165)
T 3fhm_A 88 ------------------------AASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISI 141 (165)
T ss_dssp ------------------------GGGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred ------------------------CccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence 12234679999977 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCCCCcceeeeccc
Q 041090 269 KDVLMRVVAQNLSPELTLVERFIM 292 (294)
Q Consensus 269 ~Dil~~~~~~~~~~~~~~v~~~~~ 292 (294)
.||++ .+......+...++++|.
T Consensus 142 ~dil~-~~~~~~~~~~~~l~~~i~ 164 (165)
T 3fhm_A 142 GDVVK-ARIGEIEAEAEHIKAYIA 164 (165)
T ss_dssp HHHHH-HTTCC-------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhc
Confidence 99994 455545444445666653
No 55
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.78 E-value=3.6e-18 Score=128.67 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=104.9
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW 197 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (294)
+++++|.++++++.+++++.++++.|.+++++.+||+|+|+++|+++..|+++.....
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~---------------------- 59 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG---------------------- 59 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC----------------------
Confidence 5788998899999999999999999999999999999989999999999998643220
Q ss_pred CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090 198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~ 276 (294)
......++.++|.+ ++.++.+++++.+++++|.+++++.+||+|+|+++|+||..|+++.+.
T Consensus 60 ---------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 60 ---------------DDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKM 121 (125)
T ss_dssp ---------------CCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC
T ss_pred ---------------CcccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence 01124678999977 899999999999999999999999999999999999999999996554
No 56
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.78 E-value=3.1e-18 Score=134.34 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=108.8
Q ss_pred Ccccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC---Ccccccccc
Q 041090 48 GGERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR---PDQTVVSKI 122 (294)
Q Consensus 48 ~~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~---~~~~~v~~~ 122 (294)
+...+|+|+|. .+++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+...... ....+++++
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~~ 91 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHM 91 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGG
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHHh
Confidence 45578999999 6899999999999999999999999999999999999999999998666543321 125689999
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
|.++++++.+++++.++++.|.+++ ++||++ +|+++|+||..|+++.+..
T Consensus 92 m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~ 142 (156)
T 3ctu_A 92 TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp CBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHH
T ss_pred ccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 9989999999999999999998776 699999 8999999999999987655
No 57
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.78 E-value=4.4e-19 Score=139.42 Aligned_cols=118 Identities=11% Similarity=0.182 Sum_probs=104.7
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCC-cEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANA-LLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~-~~~Givt~~di~~~~~~~~~~~~~~~v~~~~ 123 (294)
.+...+|+++|++ +++++++++++.+|++.|.+++++.+||+|+++ +++|++|.+|+++.+. .+ ...+++++|
T Consensus 34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-~~---~~~~v~~im 109 (156)
T 3oi8_A 34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF-NP---EQFHLKSIL 109 (156)
T ss_dssp HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS-CG---GGCCHHHHC
T ss_pred ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH-cC---CcccHHHHc
Confidence 3567899999997 799999999999999999999999999999874 9999999999974321 11 367899999
Q ss_pred ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL 169 (294)
Q Consensus 124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll 169 (294)
.+ ++++++++++.++++.|.+++++.+||+| +|+++|+||..|++
T Consensus 110 ~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 110 RP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp BC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred CC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 65 88999999999999999999999999999 89999999999985
No 58
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.77 E-value=2.3e-18 Score=131.01 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=102.7
Q ss_pred ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090 115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV 190 (294)
Q Consensus 115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 190 (294)
...+++++|.+ .++++.+++++.++++.|.+++++++||++ + |+++|+++..|+++....
T Consensus 4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------------- 67 (130)
T 3i8n_A 4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS---------------- 67 (130)
T ss_dssp ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT----------------
T ss_pred CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc----------------
Confidence 35789999984 456899999999999999999999999999 5 899999999999865322
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090 191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK 269 (294)
Q Consensus 191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~ 269 (294)
.....++.++| + ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.
T Consensus 68 -----------------------~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~ 121 (130)
T 3i8n_A 68 -----------------------GSGQKQLGAVM-R--PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLE 121 (130)
T ss_dssp -----------------------TTTTSBHHHHS-E--ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred -----------------------CCCcCCHHHHh-c--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHH
Confidence 01235788999 4 688999999999999999999999999999 79999999999
Q ss_pred HHHHHHHH
Q 041090 270 DVLMRVVA 277 (294)
Q Consensus 270 Dil~~~~~ 277 (294)
|+++.++.
T Consensus 122 dil~~l~g 129 (130)
T 3i8n_A 122 DIFEHLVG 129 (130)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99977654
No 59
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.77 E-value=2.9e-18 Score=134.57 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=107.4
Q ss_pred CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----CCCcccccc
Q 041090 47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----LRPDQTVVS 120 (294)
Q Consensus 47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----~~~~~~~v~ 120 (294)
.....+|+++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+.... ......++.
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~ 86 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVE 86 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGG
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHH
Confidence 4567899999997 8999999999999999999999999999998899999999999975432110 112356899
Q ss_pred cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
++|.++++++.+++++.++++.|.++++ +||++ +|+++|+||..|+++.+..
T Consensus 87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~ 139 (157)
T 2emq_A 87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK 139 (157)
T ss_dssp GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999998876 99999 7999999999999987654
No 60
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.77 E-value=7.4e-18 Score=128.47 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=106.5
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (294)
..+++++|.++++++.+++++.++++.|.+++++.+||+++|+++|+++..|+++....
T Consensus 3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------- 61 (133)
T 2ef7_A 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK--------------------- 61 (133)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT---------------------
T ss_pred cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhc---------------------
Confidence 56899999988999999999999999999999999999998899999999999764321
Q ss_pred hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
......++.++|.+ ++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.
T Consensus 62 -----------------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~ 122 (133)
T 2ef7_A 62 -----------------GKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122 (133)
T ss_dssp -----------------TCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred -----------------CCCcccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence 00123678999977 899999999999999999999999999999 8999999999999955
Q ss_pred HHH
Q 041090 275 VVA 277 (294)
Q Consensus 275 ~~~ 277 (294)
+..
T Consensus 123 ~~~ 125 (133)
T 2ef7_A 123 IDD 125 (133)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 61
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.77 E-value=2.5e-18 Score=129.09 Aligned_cols=115 Identities=24% Similarity=0.413 Sum_probs=103.2
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ 196 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (294)
+++++|.++++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++....
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~---------------------- 59 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ---------------------- 59 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT----------------------
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh----------------------
Confidence 57889999999999999999999999999999999999 8999999999999765332
Q ss_pred hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
...++.++|.+ ++.++.+++++.+++++|.+++++.+||+| +|+++|+||..|+++.+
T Consensus 60 -------------------~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l 118 (122)
T 3kpb_A 60 -------------------NKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF 118 (122)
T ss_dssp -------------------TCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred -------------------cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence 12368999977 899999999999999999999999999999 59999999999999544
No 62
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.77 E-value=2.3e-18 Score=135.36 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=103.7
Q ss_pred cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|.+ +++++.+++++.+|+++|.+++++++||+| +|+++|++|..|++++......
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~--------------- 78 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL--------------- 78 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc---------------
Confidence 3467888864 788999999999999999999999999999 7999999999999876543100
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
........++.++|.+ ++.++.+++++.+|+++|.++++ +||+| +|+++|+||+.||
T Consensus 79 ------------------~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Di 136 (156)
T 3k6e_A 79 ------------------SQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSI 136 (156)
T ss_dssp ------------------CHHHHTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHH
T ss_pred ------------------ccccccccCHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHH
Confidence 0122345789999977 99999999999999999987754 99999 8999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
++++..
T Consensus 137 l~~~~~ 142 (156)
T 3k6e_A 137 LKAVNA 142 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 966644
No 63
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.76 E-value=1.2e-17 Score=131.73 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=107.7
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++|.++++++.+++++.++++.|.+.+++.+||+| +|+++|+|+..|++..........
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~--------------- 68 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS--------------- 68 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhccc---------------
Confidence 4689999998999999999999999999999999999999 899999999999987654311000
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR 274 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~ 274 (294)
..........++.++|.+ ++.++.+++++.+|+++|.+.+++.+||+|+|+++|+||+.||++.
T Consensus 69 --------------~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~ 132 (160)
T 2o16_A 69 --------------AQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI 132 (160)
T ss_dssp ---------------------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred --------------ccccchhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 000112245679999977 8999999999999999999999999999999999999999999955
Q ss_pred HH
Q 041090 275 VV 276 (294)
Q Consensus 275 ~~ 276 (294)
+.
T Consensus 133 ~~ 134 (160)
T 2o16_A 133 AI 134 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 64
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.76 E-value=2.1e-18 Score=131.07 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=102.5
Q ss_pred ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090 116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE 191 (294)
Q Consensus 116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 191 (294)
+.+++++|. .+++++++++++.++++.|.+++++++||++ + ++++|+++..|+++...
T Consensus 4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------------ 65 (129)
T 3jtf_A 4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML------------------ 65 (129)
T ss_dssp CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT------------------
T ss_pred CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------------
Confidence 568999998 6778999999999999999999999999999 4 89999999999875311
Q ss_pred HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090 192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD 270 (294)
Q Consensus 192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D 270 (294)
....++.++|. ++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.|
T Consensus 66 -----------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~D 119 (129)
T 3jtf_A 66 -----------------------EPALDIRSLVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMED 119 (129)
T ss_dssp -----------------------CTTSCGGGGCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHH
T ss_pred -----------------------cCCcCHHHHhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 01356888883 488999999999999999999999999999 699999999999
Q ss_pred HHHHHHH
Q 041090 271 VLMRVVA 277 (294)
Q Consensus 271 il~~~~~ 277 (294)
+++.++.
T Consensus 120 il~~l~g 126 (129)
T 3jtf_A 120 VLEQIVG 126 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9977765
No 65
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.76 E-value=3.3e-18 Score=130.23 Aligned_cols=121 Identities=15% Similarity=0.246 Sum_probs=101.6
Q ss_pred cccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 117 TVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 117 ~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
.+++++|. .+++++++++++.++++.|.+++++++||++ +|+++|+++..|+++....
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~------------------ 63 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE------------------ 63 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS------------------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc------------------
Confidence 46889996 3688999999999999999999999999996 4799999999999865322
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
+. .....++.++| + ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|+
T Consensus 64 -----~~--------------~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di 121 (130)
T 3hf7_A 64 -----KK--------------EFTKEIMLRAA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI 121 (130)
T ss_dssp -----SS--------------CCCHHHHHHHS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred -----cC--------------ccchhhHHHhc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence 00 00123577888 4 689999999999999999999999999998 7999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
++.++.
T Consensus 122 l~~l~g 127 (130)
T 3hf7_A 122 LEEIVG 127 (130)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 977664
No 66
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.75 E-value=7.2e-18 Score=132.38 Aligned_cols=137 Identities=21% Similarity=0.325 Sum_probs=107.9
Q ss_pred cccccccc------cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090 117 TVVSKIMT------RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV 190 (294)
Q Consensus 117 ~~v~~~~~------~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 190 (294)
.+++++|. .+++++.+++++.++++.|.+++++.+||.++|+++|+++..|+++.+...
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~--------------- 71 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ--------------- 71 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence 46888887 445899999999999999999999999996689999999999998653220
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhH
Q 041090 191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKD 270 (294)
Q Consensus 191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~D 270 (294)
+ ......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||+.|
T Consensus 72 -------~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d 128 (157)
T 4fry_A 72 -------E--------------RSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD 128 (157)
T ss_dssp -------T--------------CCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred -------c--------------CCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence 0 00134678999977 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCcceeeeccc
Q 041090 271 VLMRVVAQNLSPELTLVERFIM 292 (294)
Q Consensus 271 il~~~~~~~~~~~~~~v~~~~~ 292 (294)
|++. +..........++++|.
T Consensus 129 il~~-l~~~~~~~~~~~~~~i~ 149 (157)
T 4fry_A 129 LVKS-VIADQQFTISQLEHYIH 149 (157)
T ss_dssp HHHH-HHTTCCCCCC-------
T ss_pred HHHH-HHHHHHhhHHHHHhhcc
Confidence 9955 45445444446666653
No 67
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.75 E-value=1.4e-18 Score=131.65 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=101.5
Q ss_pred ccccccccccC--CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090 116 QTVVSKIMTRN--PIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE 191 (294)
Q Consensus 116 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 191 (294)
+.+++++|.+. ++++.+++++.++++.|.+++++++||++ + |+++|+++..|+++....
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS----------------- 64 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence 45789999854 88999999999999999999999999999 5 899999999999753211
Q ss_pred HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090 192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD 270 (294)
Q Consensus 192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D 270 (294)
.....++.++|. ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|
T Consensus 65 ----------------------~~~~~~v~~~m~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d 119 (127)
T 3nqr_A 65 ----------------------DAEAFSMDKVLR---TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED 119 (127)
T ss_dssp ----------------------TCCCCCHHHHCB---CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred ----------------------cCCCCCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 112456889993 478999999999999999999999999999 799999999999
Q ss_pred HHHHHHH
Q 041090 271 VLMRVVA 277 (294)
Q Consensus 271 il~~~~~ 277 (294)
+++.++.
T Consensus 120 ll~~l~g 126 (127)
T 3nqr_A 120 ILELIVG 126 (127)
T ss_dssp HHHHC--
T ss_pred HHHHHhC
Confidence 9976543
No 68
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.75 E-value=3.5e-18 Score=129.58 Aligned_cols=120 Identities=12% Similarity=0.174 Sum_probs=104.8
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (294)
..+++++|.++++++.+++++.++++.|.+++++.+||+++|+++|+++..|+++....
T Consensus 4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------- 62 (128)
T 3gby_A 4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG--------------------- 62 (128)
T ss_dssp TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS---------------------
T ss_pred ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh---------------------
Confidence 56899999999999999999999999999999999999999999999999999753111
Q ss_pred hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
......++.++|.+ ++.++.+++++.+++++|.+++++.+||+| +|+++|+||+.|+++.
T Consensus 63 -----------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~ 123 (128)
T 3gby_A 63 -----------------WPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGF 123 (128)
T ss_dssp -----------------SCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred -----------------CCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHH
Confidence 00012568899977 899999999999999999999999999998 8999999999999955
Q ss_pred H
Q 041090 275 V 275 (294)
Q Consensus 275 ~ 275 (294)
+
T Consensus 124 l 124 (128)
T 3gby_A 124 L 124 (128)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.75 E-value=9.7e-18 Score=131.19 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=106.4
Q ss_pred ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEE-E--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090 115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVV-E--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA 189 (294)
Q Consensus 115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~ 189 (294)
...+++++|.+ +++++.+++++.++++.|.+++++++||+ + +|+++|+++..|+++.....
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~-------------- 83 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID-------------- 83 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH--------------
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC--------------
Confidence 46789999986 78899999999999999999999999999 5 48999999999998754331
Q ss_pred HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeeh
Q 041090 190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTS 268 (294)
Q Consensus 190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~ 268 (294)
...++.++| + ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+
T Consensus 84 --------------------------~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~ 134 (153)
T 3oco_A 84 --------------------------DKAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITD 134 (153)
T ss_dssp --------------------------TTSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECH
T ss_pred --------------------------CCCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeH
Confidence 136789999 7 899999999999999999999999999999 6999999999
Q ss_pred hHHHHHHHHc
Q 041090 269 KDVLMRVVAQ 278 (294)
Q Consensus 269 ~Dil~~~~~~ 278 (294)
.||++.++.+
T Consensus 135 ~dil~~l~~~ 144 (153)
T 3oco_A 135 KDVYEELFGN 144 (153)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9999776654
No 70
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.75 E-value=1.7e-17 Score=127.84 Aligned_cols=119 Identities=16% Similarity=0.295 Sum_probs=103.5
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC--EEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NG--EVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~--~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|.++++++.+++++.++++.|.+++++.+||+| ++ +++|+++..|+++....
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~------------------ 65 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ------------------ 65 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT------------------
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc------------------
Confidence 3579999999999999999999999999999999999999 66 89999999999864321
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
......++.++|.+ ++.++.++ ++.+|+++|.+++++.+||+| +|+++|+||..||
T Consensus 66 --------------------~~~~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl 122 (141)
T 2rih_A 66 --------------------RLDLDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL 122 (141)
T ss_dssp --------------------TCCTTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred --------------------CCCCCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence 00123678999977 89999999 999999999999999999999 8999999999999
Q ss_pred HHHH
Q 041090 272 LMRV 275 (294)
Q Consensus 272 l~~~ 275 (294)
++.+
T Consensus 123 l~~~ 126 (141)
T 2rih_A 123 CFER 126 (141)
T ss_dssp HSCH
T ss_pred HHHH
Confidence 8443
No 71
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.75 E-value=1e-17 Score=130.41 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=103.7
Q ss_pred ccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090 117 TVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV 193 (294)
Q Consensus 117 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 193 (294)
.+++++|.+ +++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++....
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~------------------- 88 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT------------------- 88 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS-------------------
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc-------------------
Confidence 589999998 899999999999999999999999999999 8999999999999864321
Q ss_pred HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
+ ......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+|+++++|+||..||+
T Consensus 89 ----~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil 147 (149)
T 3k2v_A 89 ----G--------------VDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL 147 (149)
T ss_dssp ----S--------------SCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred ----C--------------CCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence 0 01134678999977 89999999999999999999999999999977999999999997
No 72
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.75 E-value=1e-17 Score=133.93 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=111.2
Q ss_pred CcEEEEEeHHHHHHHHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHH
Q 041090 92 ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITK 167 (294)
Q Consensus 92 ~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~d 167 (294)
+.--|.++..+- .++.....+...+++++|. .+++++++++++.++++.|.+++++++||++ + ++++|+|+..|
T Consensus 13 ~~~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~D 90 (173)
T 3ocm_A 13 MPAVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKD 90 (173)
T ss_dssp -----CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHH
T ss_pred HHhcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHH
Confidence 334588886663 2222223445778999996 4688899999999999999999999999998 5 79999999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHH
Q 041090 168 CLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMR 247 (294)
Q Consensus 168 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~ 247 (294)
|+...... ...++. |.+ +++++.+++++.+|+++|.
T Consensus 91 l~~~~~~~----------------------------------------~~~~v~--~~~--~~~~v~~~~~l~~al~~m~ 126 (173)
T 3ocm_A 91 LVADLITE----------------------------------------GRVRRN--RLR--DPIIVHESIGILRLMDTLK 126 (173)
T ss_dssp HHHHHHHH----------------------------------------SSCCGG--GSB--CCCEECGGGCHHHHHHHHH
T ss_pred HHHHHhcC----------------------------------------CcchhH--hcC--CCeEECCCCcHHHHHHHHH
Confidence 98754320 124566 434 7899999999999999999
Q ss_pred HhCCceeEEee-CCeEeEeeehhHHHHHHHHcc
Q 041090 248 EFRSNSALIVT-GSKIQGILTSKDVLMRVVAQN 279 (294)
Q Consensus 248 ~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~ 279 (294)
+++++.+||+| +|+++|+||+.||++.++.+-
T Consensus 127 ~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 127 RSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp HSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred HcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence 99999999998 799999999999997766543
No 73
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.75 E-value=1.2e-17 Score=127.72 Aligned_cols=122 Identities=17% Similarity=0.275 Sum_probs=105.3
Q ss_pred cccccccc---cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090 117 TVVSKIMT---RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV 193 (294)
Q Consensus 117 ~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 193 (294)
.+++++|. .+++++++++++.++++.|.+++++.+||+++|+++|+++..|+++.....
T Consensus 6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~------------------ 67 (135)
T 2rc3_A 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL------------------ 67 (135)
T ss_dssp CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS------------------
T ss_pred eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc------------------
Confidence 37889998 889999999999999999999999999999988999999999997532210
Q ss_pred HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090 194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM 273 (294)
Q Consensus 194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~ 273 (294)
| ......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||..|+++
T Consensus 68 ----~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~ 127 (135)
T 2rc3_A 68 ----D--------------KPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVK 127 (135)
T ss_dssp ----S--------------SCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ----C--------------CCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHH
Confidence 0 01234678999977 899999999999999999999999999999999999999999995
Q ss_pred HHH
Q 041090 274 RVV 276 (294)
Q Consensus 274 ~~~ 276 (294)
.+.
T Consensus 128 ~~~ 130 (135)
T 2rc3_A 128 DAI 130 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 74
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.75 E-value=2.5e-17 Score=138.84 Aligned_cols=126 Identities=9% Similarity=0.089 Sum_probs=105.6
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHHHc----CC---C-----
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN--ALLSGIVTDKDITTRVIAE----GL---R----- 113 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~--~~~~Givt~~di~~~~~~~----~~---~----- 113 (294)
...++|+|+|+++++++.+++++.+|.++|.+++++++||+|++ ++++|+|+.+||++.+... .. .
T Consensus 10 ~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~ 89 (250)
T 2d4z_A 10 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD 89 (250)
T ss_dssp CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred cCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence 35678999999999999999999999999999999999999974 6899999999997544321 00 0
Q ss_pred ---------------------C----------------------------------------------------------
Q 041090 114 ---------------------P---------------------------------------------------------- 114 (294)
Q Consensus 114 ---------------------~---------------------------------------------------------- 114 (294)
+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (250)
T 2d4z_A 90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE 169 (250)
T ss_dssp CC---------------------------------------------------------------------------CCS
T ss_pred ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence 0
Q ss_pred --------------ccccc--c-cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090 115 --------------DQTVV--S-KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI 173 (294)
Q Consensus 115 --------------~~~~v--~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~ 173 (294)
...++ . .+|.+.++++.++++|.++..+|...+++++||+++|+++||||+.||++++.
T Consensus 170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHH
Confidence 01112 2 35778889999999999999999999999999999999999999999998764
No 75
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.74 E-value=2.1e-17 Score=126.81 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=107.3
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
+...+++++|.++++++++++++.++++.|.+++++.+||+| +|+++|+++..|+++.....
T Consensus 4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 66 (138)
T 2yzi_A 4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP----------------- 66 (138)
T ss_dssp CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-----------------
T ss_pred hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc-----------------
Confidence 446789999999999999999999999999999999999999 89999999999997432210
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
| .....++.++|.+ ++.++.+++++.+|+++|.+++++.+ |+| +|+++|+||..||
T Consensus 67 -----~---------------~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~di 123 (138)
T 2yzi_A 67 -----G---------------LPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDL 123 (138)
T ss_dssp -----C---------------CCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHH
T ss_pred -----C---------------CcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHH
Confidence 0 0124678999977 89999999999999999999999999 999 8999999999999
Q ss_pred HHHHHHccC
Q 041090 272 LMRVVAQNL 280 (294)
Q Consensus 272 l~~~~~~~~ 280 (294)
++. +...+
T Consensus 124 l~~-~~~~~ 131 (138)
T 2yzi_A 124 LEA-SRRRL 131 (138)
T ss_dssp HHH-HHCCS
T ss_pred HHH-HHHHH
Confidence 954 44433
No 76
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.74 E-value=2e-18 Score=132.43 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=101.9
Q ss_pred ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090 116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE 191 (294)
Q Consensus 116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 191 (294)
+.+++++|. .+++++.+++++.++++.|.+++++++||++ + ++++|+++..|+++....
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK----------------- 64 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence 457899998 5678999999999999999999999999999 5 799999999999754211
Q ss_pred HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090 192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD 270 (294)
Q Consensus 192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D 270 (294)
......++.++|. ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|
T Consensus 65 ---------------------~~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D 120 (136)
T 3lfr_A 65 ---------------------ADGDSDDVKKLLR---PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED 120 (136)
T ss_dssp ---------------------SSGGGCCGGGTCB---CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred ---------------------ccCCCcCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 0112357889994 489999999999999999999999999999 799999999999
Q ss_pred HHHHHHH
Q 041090 271 VLMRVVA 277 (294)
Q Consensus 271 il~~~~~ 277 (294)
+++.++.
T Consensus 121 il~~l~~ 127 (136)
T 3lfr_A 121 VLEQIVG 127 (136)
T ss_dssp HHTTC--
T ss_pred HHHHHhC
Confidence 9966655
No 77
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.74 E-value=2.9e-17 Score=129.35 Aligned_cols=124 Identities=16% Similarity=0.258 Sum_probs=105.4
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++|.+ ++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++.....
T Consensus 16 ~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------- 75 (159)
T 3fv6_A 16 KLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ------------------- 75 (159)
T ss_dssp TCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-------------------
T ss_pred hCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-------------------
Confidence 5689999986 56899999999999999999999999999 89999999999998653210
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CC---eEeEeeehhH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GS---KIQGILTSKD 270 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g---~~vGivt~~D 270 (294)
......++.++|.+..++.++.+++++.+|+++|.+++++.+||+| +| +++|+||+.|
T Consensus 76 ------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~d 137 (159)
T 3fv6_A 76 ------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTN 137 (159)
T ss_dssp ------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHH
T ss_pred ------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHH
Confidence 1123467899996433688999999999999999999999999999 66 9999999999
Q ss_pred HHHHHHH
Q 041090 271 VLMRVVA 277 (294)
Q Consensus 271 il~~~~~ 277 (294)
|++.+..
T Consensus 138 il~~l~~ 144 (159)
T 3fv6_A 138 MTKILVS 144 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9966554
No 78
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.74 E-value=1.5e-17 Score=127.49 Aligned_cols=121 Identities=24% Similarity=0.365 Sum_probs=104.9
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHH-HHHHHHHHHHHHhhchhHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKC-LYDAISRMEKAAEQGSAIAAAVEGV 193 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dl-l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (294)
..+++++|.++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|+ ++....
T Consensus 7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------- 67 (138)
T 2p9m_A 7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD------------------- 67 (138)
T ss_dssp TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-------------------
T ss_pred cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-------------------
Confidence 5789999998999999999999999999999999999999 8999999999998 653211
Q ss_pred HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhC-----CceeEEee-CCeEeEeee
Q 041090 194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFR-----SNSALIVT-GSKIQGILT 267 (294)
Q Consensus 194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd-~g~~vGivt 267 (294)
......++.++|.+ ++.++.+++++.+++++|.+++ ++.+||+| +|+++|+||
T Consensus 68 -------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit 126 (138)
T 2p9m_A 68 -------------------KYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIIS 126 (138)
T ss_dssp -------------------CCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEE
T ss_pred -------------------cccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEE
Confidence 11234678999976 8999999999999999999999 99999999 899999999
Q ss_pred hhHHHHHHH
Q 041090 268 SKDVLMRVV 276 (294)
Q Consensus 268 ~~Dil~~~~ 276 (294)
..|+++.+.
T Consensus 127 ~~dll~~~~ 135 (138)
T 2p9m_A 127 DGDIIRTIS 135 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999995543
No 79
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.73 E-value=6.1e-17 Score=127.73 Aligned_cols=130 Identities=11% Similarity=0.155 Sum_probs=106.6
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV 190 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 190 (294)
....+++++|.++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|+++........
T Consensus 10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~------------ 77 (164)
T 2pfi_A 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS------------ 77 (164)
T ss_dssp CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC----------------
T ss_pred ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc------------
Confidence 346789999999999999999999999999999999999998 48999999999998654321000
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCc------eeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeE
Q 041090 191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAK------VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQG 264 (294)
Q Consensus 191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vG 264 (294)
.......++.++|.. . +.++.+++++.+|+++|.+++++.+||+|+|+++|
T Consensus 78 ---------------------~~~~~~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~G 134 (164)
T 2pfi_A 78 ---------------------RAPGHQQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVG 134 (164)
T ss_dssp ------------------------CCCCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEE
T ss_pred ---------------------cCCcccchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEE
Confidence 000123467788866 4 78999999999999999999999999999999999
Q ss_pred eeehhHHHHHHHHc
Q 041090 265 ILTSKDVLMRVVAQ 278 (294)
Q Consensus 265 ivt~~Dil~~~~~~ 278 (294)
+||+.||++.+...
T Consensus 135 iit~~dil~~~~~~ 148 (164)
T 2pfi_A 135 CVSWVEMKKAISNL 148 (164)
T ss_dssp EEEHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHhh
Confidence 99999999665553
No 80
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.73 E-value=5.5e-18 Score=129.19 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=104.0
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++|.++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|++......
T Consensus 7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------- 67 (133)
T 1y5h_A 7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA------------------- 67 (133)
T ss_dssp -CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-------------------
T ss_pred hcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-------------------
Confidence 3588999988899999999999999999999999999998 89999999999997421110
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR 274 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~ 274 (294)
+ ......++.++|.+ ++.++.+++++.+++++|.+++++.+||+|+|+++|+||+.||++.
T Consensus 68 ---~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~ 128 (133)
T 1y5h_A 68 ---G--------------LDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH 128 (133)
T ss_dssp ---T--------------CCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHT
T ss_pred ---C--------------CCccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 0 00123678999977 8999999999999999999999999999999999999999999954
Q ss_pred H
Q 041090 275 V 275 (294)
Q Consensus 275 ~ 275 (294)
+
T Consensus 129 l 129 (133)
T 1y5h_A 129 L 129 (133)
T ss_dssp C
T ss_pred H
Confidence 3
No 81
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.72 E-value=5.8e-17 Score=139.86 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=111.0
Q ss_pred CCcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090 47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~ 121 (294)
.+...+|+++|.++++++++++|+.+|++.|.++ +++.+||+|++|+++|+||.+|++.. ....++++
T Consensus 133 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------~~~~~v~~ 205 (286)
T 2oux_A 133 HYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDDTLIAD 205 (286)
T ss_dssp TSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------CTTSBHHH
T ss_pred cCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-------CCCCcHHH
Confidence 4677899999999999999999999999999987 88999999999999999999999631 23678999
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
+|.++++++++++++.++++.|.+++++.+||+| +|+++|+||..|++..+...
T Consensus 206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999999999876553
No 82
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.72 E-value=1.7e-17 Score=136.26 Aligned_cols=120 Identities=9% Similarity=0.114 Sum_probs=106.2
Q ss_pred CCcccccccccccCCeEEcCCCcHHHHHHHHHhC---CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG---KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188 (294)
Q Consensus 113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~---~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~ 188 (294)
.+.+.+++++|.+++++++++.++.++++.|.+. +++.+||++ +++++|+++..||+..
T Consensus 50 ~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------- 112 (205)
T 3kxr_A 50 QYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------------- 112 (205)
T ss_dssp HSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-----------------
T ss_pred CCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-----------------
Confidence 4557789999999999999999999999999986 789999999 8999999999998631
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
....++.++|.+ +++++.+++++.+|+++|.+++++.+||+| +|+++|+||
T Consensus 113 --------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT 164 (205)
T 3kxr_A 113 --------------------------EPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVT 164 (205)
T ss_dssp --------------------------CTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEE
T ss_pred --------------------------CCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEE
Confidence 123579999977 899999999999999999999999999999 799999999
Q ss_pred hhHHHHHHHH
Q 041090 268 SKDVLMRVVA 277 (294)
Q Consensus 268 ~~Dil~~~~~ 277 (294)
..|+++.+..
T Consensus 165 ~~Dil~~i~~ 174 (205)
T 3kxr_A 165 LRAATALVRE 174 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999955443
No 83
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.72 E-value=4e-17 Score=127.03 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=106.0
Q ss_pred cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|.+ +++++.+++++.++++.|.+++++.+||++ +|+++|+++..|++.........
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~-------------- 69 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTW-------------- 69 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CC--------------
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcc--------------
Confidence 4689999988 788999999999999999999999999999 78999999999997532210000
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
................++.++|.+ +++++.+++++.+|+++|.+++++.+||+| +|+++|+||..||
T Consensus 70 ----------~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~di 137 (152)
T 4gqw_A 70 ----------KTFNAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNV 137 (152)
T ss_dssp ----------HHHHHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHH
T ss_pred ----------cchHHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHH
Confidence 000000000011234679999987 899999999999999999999999999999 8999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
++.+..
T Consensus 138 l~~~~~ 143 (152)
T 4gqw_A 138 VRAALQ 143 (152)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 965554
No 84
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.71 E-value=1.8e-16 Score=124.42 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcE-EEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090 111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRH-LPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA 189 (294)
Q Consensus 111 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~-~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~ 189 (294)
...+...+++++|.++++++.+++++.+|++.|.+++++. +||+|+++++|+++..|+++......
T Consensus 10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~------------- 76 (157)
T 1o50_A 10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF------------- 76 (157)
T ss_dssp CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH-------------
T ss_pred hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH-------------
Confidence 3455678899999999999999999999999999999999 99999449999999999987644210
Q ss_pred HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeeh
Q 041090 190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTS 268 (294)
Q Consensus 190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~ 268 (294)
+ . .+.....+ ..........++.++|. . +.++.+++++.+|+++|.+++++.+||+| +|+++|+||+
T Consensus 77 -----~--~-~~~~~~~~-~~~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~ 144 (157)
T 1o50_A 77 -----F--G-FIPKEELI-RSSMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS 144 (157)
T ss_dssp -----H--C-CCC--------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred -----H--h-hhccHHHH-HHHHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence 0 0 00000000 00001123467889995 3 88999999999999999999999999999 8999999999
Q ss_pred hHHHHHHHH
Q 041090 269 KDVLMRVVA 277 (294)
Q Consensus 269 ~Dil~~~~~ 277 (294)
.||++.+..
T Consensus 145 ~dll~~l~~ 153 (157)
T 1o50_A 145 LEILLALWK 153 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999955543
No 85
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.71 E-value=1.8e-16 Score=122.16 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=103.4
Q ss_pred cccccc---ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090 116 QTVVSK---IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE 191 (294)
Q Consensus 116 ~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 191 (294)
..++++ +|..+++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++......
T Consensus 7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------- 71 (144)
T 2nyc_A 7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI--------------- 71 (144)
T ss_dssp GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----------------
T ss_pred hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc---------------
Confidence 456777 7778889999999999999999999999999999 899999999999976432200
Q ss_pred HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcC----CceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090 192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITEN----AKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL 266 (294)
Q Consensus 192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv 266 (294)
......++.++|.+. .++.++.+++++.+|+++|.+++++.+||+| +|+++|+|
T Consensus 72 ---------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gii 130 (144)
T 2nyc_A 72 ---------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVL 130 (144)
T ss_dssp ------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred ---------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Confidence 001245688888642 1588999999999999999999999999999 79999999
Q ss_pred ehhHHHHHHHHc
Q 041090 267 TSKDVLMRVVAQ 278 (294)
Q Consensus 267 t~~Dil~~~~~~ 278 (294)
|..||++.+...
T Consensus 131 t~~dil~~l~~~ 142 (144)
T 2nyc_A 131 TLSDILKYILLG 142 (144)
T ss_dssp EHHHHHHHHHHC
T ss_pred EHHHHHHHHHhc
Confidence 999999766543
No 86
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.71 E-value=4.5e-17 Score=126.77 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=104.5
Q ss_pred ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|. .+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.....
T Consensus 14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~----------------- 76 (150)
T 3lqn_A 14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL----------------- 76 (150)
T ss_dssp HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS-----------------
T ss_pred cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh-----------------
Confidence 568999998 4588999999999999999999999999999 89999999999998643210
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
..+. .......++.++|.+ ++.++.+++++.+|+++|.++++ +||+| +|+++|+||+.||
T Consensus 77 ------~~~~---------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~di 137 (150)
T 3lqn_A 77 ------ERIE---------FERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAI 137 (150)
T ss_dssp ------SSBC---------GGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHH
T ss_pred ------cccc---------hhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHH
Confidence 0000 011234678999977 89999999999999999999887 99999 8999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
++.+..
T Consensus 138 l~~l~~ 143 (150)
T 3lqn_A 138 LKLLNK 143 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 955443
No 87
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.71 E-value=1.3e-16 Score=128.49 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=109.2
Q ss_pred cccccccccccC----CeEE--cCCCcHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEehHHHHHHHHHHHHHHHhhchh
Q 041090 115 DQTVVSKIMTRN----PIFV--TSDSLAIEALQKMVQGKFRHLPVV--E-NGEVIAILDITKCLYDAISRMEKAAEQGSA 185 (294)
Q Consensus 115 ~~~~v~~~~~~~----~~~v--~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~ 185 (294)
...+++++|.+. ++++ .+++++.+|++.|.+++++.+||+ + +|+++|+|+..|+++...........
T Consensus 9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~---- 84 (185)
T 2j9l_A 9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDG---- 84 (185)
T ss_dssp CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSC----
T ss_pred ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCC----
Confidence 367899999876 6788 999999999999999999999999 6 89999999999998765431100000
Q ss_pred HHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEe
Q 041090 186 IAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGI 265 (294)
Q Consensus 186 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGi 265 (294)
+ ...... .+..... ..........++.++|.+ ++.++.+++++.+|+++|.+++++.+||+|+|+++|+
T Consensus 85 ~------~~~~~~-~~~~~~~--~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGi 153 (185)
T 2j9l_A 85 V------VSTSII-YFTEHSP--PLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGI 153 (185)
T ss_dssp C------CTTCEE-ECSSSCC--CCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred c------ccccee-ecccCCc--ccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEE
Confidence 0 000000 0000000 000011234678999977 8999999999999999999999999999999999999
Q ss_pred eehhHHHHHHHHc
Q 041090 266 LTSKDVLMRVVAQ 278 (294)
Q Consensus 266 vt~~Dil~~~~~~ 278 (294)
||+.||++.+...
T Consensus 154 it~~dll~~l~~~ 166 (185)
T 2j9l_A 154 ITKKDVLKHIAQM 166 (185)
T ss_dssp EEHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHh
Confidence 9999999665543
No 88
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.70 E-value=1.2e-16 Score=137.44 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=108.0
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccc
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~ 122 (294)
+...+++++|+++++++.+++++.+|++.|.++ +++.+||+|++|+++|++|.+|++.. ....+++++
T Consensus 132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------~~~~~v~~i 204 (278)
T 2yvy_A 132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAEI 204 (278)
T ss_dssp SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------CTTCBSTTT
T ss_pred CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------CCCCcHHHH
Confidence 456789999999999999999999999999986 78999999999999999999999742 235789999
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS 174 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~ 174 (294)
|.++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus 205 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 205 MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred hCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence 988999999999999999999999999999999 8999999999999987654
No 89
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.70 E-value=6.1e-17 Score=129.73 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=109.7
Q ss_pred cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|.+ +++++.+++++.++++.|.+++++.+||++ +|+++|+|+..|+++........... ..
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~---------~~ 73 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND---------TN 73 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCc---------cc
Confidence 3578899987 789999999999999999999999999999 89999999999998532111000000 00
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
+....+....... ............++.++|.+ +++++.+++++.+|+++|.+++++.+||+| +|+++|+||+.||
T Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di 150 (180)
T 3sl7_A 74 LFPDVDSTWKTFN-ELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV 150 (180)
T ss_dssp -------CCCSHH-HHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred ccccccchhhhhH-HHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence 0000111111111 11122223446789999987 899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHc
Q 041090 272 LMRVVAQ 278 (294)
Q Consensus 272 l~~~~~~ 278 (294)
++.+...
T Consensus 151 l~~~~~~ 157 (180)
T 3sl7_A 151 VRAALQI 157 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9776553
No 90
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.70 E-value=7.1e-17 Score=126.54 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=105.0
Q ss_pred ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|. .+++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++.......
T Consensus 14 ~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~--------------- 78 (156)
T 3ctu_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL--------------- 78 (156)
T ss_dssp HTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccc---------------
Confidence 467899998 6788999999999999999999999999999 8999999999999876543100
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
........++.++|.+ ++.++.+++++.+|+++|.+++ .+||+| +|+++|+||+.|+
T Consensus 79 ------------------~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~di 136 (156)
T 3ctu_A 79 ------------------SQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSI 136 (156)
T ss_dssp ------------------CHHHHTTSBGGGGCBC--SCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHH
T ss_pred ------------------cccccccCcHHHhccC--CceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHH
Confidence 0012235779999977 8999999999999999999886 699999 8999999999999
Q ss_pred HHHHHHccC
Q 041090 272 LMRVVAQNL 280 (294)
Q Consensus 272 l~~~~~~~~ 280 (294)
++. +...+
T Consensus 137 l~~-l~~~~ 144 (156)
T 3ctu_A 137 LKA-VNALL 144 (156)
T ss_dssp HHH-HHHHS
T ss_pred HHH-HHHHH
Confidence 955 44444
No 91
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.70 E-value=1.3e-16 Score=148.98 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=111.8
Q ss_pred CCcccchhccccCCceeecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090 47 AGGERTVKKLRLSKALTIPEG-TIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124 (294)
Q Consensus 47 ~~~~~~v~dl~~~~~~~v~~~-~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~ 124 (294)
.|...+|+|+|+++++++.++ +|+.+|+++|.+++++.+||+| ++++++|+||.+||++.+...... ...++.++|.
T Consensus 380 ~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~-~~~~V~~im~ 458 (527)
T 3pc3_A 380 WWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ-QSDPAIKALN 458 (527)
T ss_dssp TTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC-TTSBGGGGEE
T ss_pred cccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc-CCCcHHHHhc
Confidence 478899999999999999999 9999999999999999999999 789999999999998777654433 3678999999
Q ss_pred cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C----CEEEEEEehHHHHHHHHH
Q 041090 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N----GEVIAILDITKCLYDAIS 174 (294)
Q Consensus 125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~----~~~vGivt~~dll~~~~~ 174 (294)
++++++.+++++.+++++|.++++ +||+| + |+++|+||..||++++..
T Consensus 459 ~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 459 KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999976664 68998 4 899999999999987665
No 92
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.70 E-value=3.4e-16 Score=131.90 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=108.8
Q ss_pred cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHHHHHHHHHHHHhhc--------
Q 041090 115 DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N--GEVIAILDITKCLYDAISRMEKAAEQG-------- 183 (294)
Q Consensus 115 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~~~~~~~~~~~~~~-------- 183 (294)
...+++++|.++++++.+++++.++.++|.+++++.+||++ + ++++|+|+..||++.+...........
T Consensus 11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~ 90 (250)
T 2d4z_A 11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADE 90 (250)
T ss_dssp SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCC
T ss_pred CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccc
Confidence 46789999999999999999999999999999999999999 3 579999999999987654321111000
Q ss_pred ------h------hHHHHHHHHHHh-------hC----------------C--------------------------CC-
Q 041090 184 ------S------AIAAAVEGVERQ-------WG----------------S--------------------------NF- 201 (294)
Q Consensus 184 ------~------~~~~~~~~~~~~-------~g----------------~--------------------------~~- 201 (294)
. .....+..+... .| . ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (250)
T 2d4z_A 91 EGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEM 170 (250)
T ss_dssp C---------------------------------------------------------------------------CCSC
T ss_pred cccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccc
Confidence 0 000000000000 00 0 00
Q ss_pred CChhhhHHHHHHhhcccch--h-hhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090 202 SAPYAFIETLRERMFKPSL--S-TIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v--~-~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~ 276 (294)
-...+ .....+.....++ . .+|.. .++++.++++|.+|..+|...|++++||++.|+++||||++||++++.
T Consensus 171 i~~~~-~~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 171 LTLEE-IYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CBHHH-HHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred cChhh-hhhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHH
Confidence 00000 0111111233444 4 36877 999999999999999999999999999999999999999999995543
No 93
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.69 E-value=1e-17 Score=131.54 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=101.1
Q ss_pred CCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090 113 RPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188 (294)
Q Consensus 113 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~ 188 (294)
.....+++++|.+ +++++++++++.++++.|.+++++++||++ + ++++|+++..|+++....
T Consensus 34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~-------------- 99 (156)
T 3oi8_A 34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN-------------- 99 (156)
T ss_dssp HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC--------------
T ss_pred ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc--------------
Confidence 3446789999986 688999999999999999999999999999 5 499999999999753211
Q ss_pred HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
. ...++.++|. ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||
T Consensus 100 -------------------------~-~~~~v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt 150 (156)
T 3oi8_A 100 -------------------------P-EQFHLKSILR---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVT 150 (156)
T ss_dssp -------------------------G-GGCCHHHHCB---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEE
T ss_pred -------------------------C-CcccHHHHcC---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEE
Confidence 0 2356889994 488999999999999999999999999999 799999999
Q ss_pred hhHHH
Q 041090 268 SKDVL 272 (294)
Q Consensus 268 ~~Dil 272 (294)
+.||+
T Consensus 151 ~~Dil 155 (156)
T 3oi8_A 151 FEDII 155 (156)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99986
No 94
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.69 E-value=3.2e-16 Score=122.32 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=100.3
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++ ++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|+++.....
T Consensus 22 ~~~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~------------------- 80 (152)
T 2uv4_A 22 ELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK------------------- 80 (152)
T ss_dssp HHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCS-------------------
T ss_pred HccCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcch-------------------
Confidence 4567776 6788899999999999999999999999999 89999999999997643210
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhh------cCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIIT------ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT 267 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt 267 (294)
+. .....++.++|. + ++.++.+++++.+|+++|.+.+++.+||+| +|+++|+||
T Consensus 81 ---~~--------------~~~~~~v~~~m~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit 141 (152)
T 2uv4_A 81 ---TY--------------NNLDVSVTKALQHRSHYFE--GVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVS 141 (152)
T ss_dssp ---SC--------------CCTTSBGGGGGGTCCHHHH--TCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEE
T ss_pred ---hh--------------hhhcchHHHHHhhhhcccC--CCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEE
Confidence 00 011346778885 5 789999999999999999999999999999 699999999
Q ss_pred hhHHHHHH
Q 041090 268 SKDVLMRV 275 (294)
Q Consensus 268 ~~Dil~~~ 275 (294)
..||++.+
T Consensus 142 ~~dil~~l 149 (152)
T 2uv4_A 142 LSDILQAL 149 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999654
No 95
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.68 E-value=2.1e-16 Score=123.90 Aligned_cols=129 Identities=14% Similarity=0.196 Sum_probs=105.2
Q ss_pred Cccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090 114 PDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV 190 (294)
Q Consensus 114 ~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 190 (294)
....+++++|.+ +++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++....
T Consensus 8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~---------------- 71 (157)
T 2emq_A 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG---------------- 71 (157)
T ss_dssp --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC----------------
T ss_pred HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc----------------
Confidence 346789999986 888999999999999999999999999999 8999999999999764221
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090 191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK 269 (294)
Q Consensus 191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~ 269 (294)
+..+. .......++.++|.+ ++.++.+++++.+|+++|.++++ +||+| +|+++|+||+.
T Consensus 72 -------~~~~~---------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~ 131 (157)
T 2emq_A 72 -------LERIE---------FERLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRR 131 (157)
T ss_dssp -------SSSBC---------GGGGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHH
T ss_pred -------ccccc---------hHHhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHH
Confidence 00000 012235678999977 89999999999999999999987 99999 79999999999
Q ss_pred HHHHHHHHc
Q 041090 270 DVLMRVVAQ 278 (294)
Q Consensus 270 Dil~~~~~~ 278 (294)
||++.+...
T Consensus 132 dil~~~~~~ 140 (157)
T 2emq_A 132 EVLKQLNKQ 140 (157)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999655443
No 96
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.68 E-value=1.6e-16 Score=128.17 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=105.7
Q ss_pred ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
..+++++|.++++++.+++++.+++++|.+++++.+||++ +|+++|+++..|++......
T Consensus 8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~------------------- 68 (184)
T 1pvm_A 8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR------------------- 68 (184)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence 4689999999999999999999999999999999999999 89999999999997643210
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.......++.++|.+ ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||..||++
T Consensus 69 -----------------~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~ 129 (184)
T 1pvm_A 69 -----------------NKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 129 (184)
T ss_dssp -----------------CCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred -----------------ccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHH
Confidence 001234578999977 899999999999999999999999999999 599999999999995
Q ss_pred HH
Q 041090 274 RV 275 (294)
Q Consensus 274 ~~ 275 (294)
.+
T Consensus 130 ~~ 131 (184)
T 1pvm_A 130 YL 131 (184)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 97
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.67 E-value=1.3e-16 Score=125.52 Aligned_cols=128 Identities=12% Similarity=0.160 Sum_probs=105.5
Q ss_pred Cccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090 114 PDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV 190 (294)
Q Consensus 114 ~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 190 (294)
....+++++|.+ +++++.+++++.++++.|.+++++.+||+| +|+++|+++..|++......
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~--------------- 75 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL--------------- 75 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS---------------
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh---------------
Confidence 446789999987 889999999999999999999999999999 78999999999997643210
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090 191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK 269 (294)
Q Consensus 191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~ 269 (294)
..+ -.......++.++|.+ ++.++.+++++.+|+++|.+.++ +||+| +|+++|+||+.
T Consensus 76 --------~~~---------~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~ 134 (159)
T 1yav_A 76 --------ERI---------EFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRR 134 (159)
T ss_dssp --------SSB---------CGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHH
T ss_pred --------ccc---------chhhhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHH
Confidence 000 0011234679999977 89999999999999999998877 99999 89999999999
Q ss_pred HHHHHHHH
Q 041090 270 DVLMRVVA 277 (294)
Q Consensus 270 Dil~~~~~ 277 (294)
||++.+..
T Consensus 135 dil~~~~~ 142 (159)
T 1yav_A 135 VVLKELNK 142 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99955443
No 98
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.66 E-value=2.7e-16 Score=129.90 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=104.6
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
.....++++|..+++++.+++++.+++++|.+++++.+||+| +++++|+++..|++...
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~-------------------- 69 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-------------------- 69 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC--------------------
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc--------------------
Confidence 346688999999999999999999999999999999999999 89999999999985321
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV 271 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di 271 (294)
...++.++|.+ ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||.+|+
T Consensus 70 -----------------------~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Di 124 (213)
T 1vr9_A 70 -----------------------LDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124 (213)
T ss_dssp -----------------------TTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHH
T ss_pred -----------------------CCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHH
Confidence 13568999977 899999999999999999999999999999 5999999999999
Q ss_pred HHHHHH
Q 041090 272 LMRVVA 277 (294)
Q Consensus 272 l~~~~~ 277 (294)
++.+..
T Consensus 125 l~~~~~ 130 (213)
T 1vr9_A 125 LEALIE 130 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 965544
No 99
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.65 E-value=5e-16 Score=133.96 Aligned_cols=121 Identities=15% Similarity=0.253 Sum_probs=107.0
Q ss_pred CCCcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchh
Q 041090 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSA 185 (294)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~ 185 (294)
......+++++|.++++++.+++++.++++.|.++ +++++||+| +|+++|+|+..|++..
T Consensus 132 l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------------- 197 (286)
T 2oux_A 132 LHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------------- 197 (286)
T ss_dssp TTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------
T ss_pred hcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------------
Confidence 35567899999999999999999999999999986 788899999 8999999999998642
Q ss_pred HHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeE
Q 041090 186 IAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQG 264 (294)
Q Consensus 186 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vG 264 (294)
....++.++|.+ +++++++++++.+|+++|.+++++.+||+| +|+++|
T Consensus 198 -----------------------------~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvG 246 (286)
T 2oux_A 198 -----------------------------DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLG 246 (286)
T ss_dssp -----------------------------CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred -----------------------------CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEE
Confidence 123678999977 899999999999999999999999999999 799999
Q ss_pred eeehhHHHHHHHH
Q 041090 265 ILTSKDVLMRVVA 277 (294)
Q Consensus 265 ivt~~Dil~~~~~ 277 (294)
+||..||++.+..
T Consensus 247 iIT~~Dil~~i~~ 259 (286)
T 2oux_A 247 IVTVDDIIDVIDD 259 (286)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEEHHHHHHHHHH
Confidence 9999999955443
No 100
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.64 E-value=1.2e-14 Score=134.41 Aligned_cols=114 Identities=22% Similarity=0.282 Sum_probs=102.3
Q ss_pred hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-CCeE
Q 041090 53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-NPIF 129 (294)
Q Consensus 53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~~ 129 (294)
.++.|..+++++++++|+.+|+++|.+++++.+||+|+ +++++|+||.+|++. ......++.++|.+ ++++
T Consensus 115 ~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~vM~~~~~vt 188 (511)
T 3usb_A 115 SESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDVMTKEQLIT 188 (511)
T ss_dssp SSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHHCCCCCCCC
T ss_pred cccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHhcccCCCEE
Confidence 34556778899999999999999999999999999998 899999999999952 22336789999997 8899
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
+++++++.+++++|.+++++.+||+| +|+++|+||..|+++..
T Consensus 189 v~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~ 232 (511)
T 3usb_A 189 APVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232 (511)
T ss_dssp EETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence 99999999999999999999999999 99999999999998753
No 101
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.64 E-value=2.9e-16 Score=149.33 Aligned_cols=123 Identities=19% Similarity=0.129 Sum_probs=105.0
Q ss_pred cccchhcccc--CCceeecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC------------
Q 041090 49 GERTVKKLRL--SKALTIPEGTIVSDACRRMA-SRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR------------ 113 (294)
Q Consensus 49 ~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~-~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~------------ 113 (294)
.+++|+|+|. ++++++++++++.|+.+.|. +++++.+||+|++++++|++|.+|+++.+..+...
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence 6789999999 89999999999999999999 79999999999999999999999997433211000
Q ss_pred ----------------------------------CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEE
Q 041090 114 ----------------------------------PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEV 159 (294)
Q Consensus 114 ----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~ 159 (294)
....+++++|.++++++++++++.++++.|.+++++++||+++|++
T Consensus 531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~l 610 (632)
T 3org_A 531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKL 610 (632)
T ss_dssp ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEE
T ss_pred ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEECCEE
Confidence 0011378899999999999999999999999999999999999999
Q ss_pred EEEEehHHHHHH
Q 041090 160 IAILDITKCLYD 171 (294)
Q Consensus 160 vGivt~~dll~~ 171 (294)
+|+||..|+++.
T Consensus 611 vGIVT~~Dll~~ 622 (632)
T 3org_A 611 VGIVEREDVAYG 622 (632)
T ss_dssp EEEEEGGGTEEC
T ss_pred EEEEehhhHHHH
Confidence 999999999764
No 102
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.64 E-value=2.9e-15 Score=137.71 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=109.7
Q ss_pred CcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccc
Q 041090 48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122 (294)
Q Consensus 48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~ 122 (294)
+.+.+++++|+++++++++++|+.+|++.|.++ +++.+||+|++++++|++|.+|++.. ....+++++
T Consensus 152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------~~~~~v~di 224 (473)
T 2zy9_A 152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAEI 224 (473)
T ss_dssp SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------CTTSBGGGT
T ss_pred CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------CCCCcHHHH
Confidence 456788999999999999999999999999986 57899999999999999999999741 236789999
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR 175 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~ 175 (294)
|.++++++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.....
T Consensus 225 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 225 MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp SBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred hCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence 998999999999999999999999999999999 89999999999999876554
No 103
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.63 E-value=1.3e-15 Score=130.89 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=104.4
Q ss_pred CcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHH
Q 041090 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIA 187 (294)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~ 187 (294)
+...+++++|.++++++.+++++.++++.|.+. ++..+||++ +|+++|+|+..|++..
T Consensus 132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------- 195 (278)
T 2yvy_A 132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------- 195 (278)
T ss_dssp SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------------
T ss_pred CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------------
Confidence 346789999999999999999999999999876 789999999 8999999999998742
Q ss_pred HHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090 188 AAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL 266 (294)
Q Consensus 188 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv 266 (294)
....++.++|.+ +++++++++++.+|+++|.+++++.+||+| +|+++|+|
T Consensus 196 ---------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiv 246 (278)
T 2yvy_A 196 ---------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV 246 (278)
T ss_dssp ---------------------------CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred ---------------------------CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEE
Confidence 123678999977 899999999999999999999999999999 79999999
Q ss_pred ehhHHHHHHH
Q 041090 267 TSKDVLMRVV 276 (294)
Q Consensus 267 t~~Dil~~~~ 276 (294)
|..||++.+.
T Consensus 247 T~~Dil~~i~ 256 (278)
T 2yvy_A 247 TVDDVLDVLE 256 (278)
T ss_dssp EHHHHHHHC-
T ss_pred EHHHHHHHHH
Confidence 9999995443
No 104
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.56 E-value=1e-14 Score=136.07 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=105.6
Q ss_pred ccccccccccCCeEEcCC-CcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090 116 QTVVSKIMTRNPIFVTSD-SLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG 192 (294)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 192 (294)
..+++++|.++++++.++ +++.+++++|.+++++++||+| +++++|+||..||++.+...
T Consensus 383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~----------------- 445 (527)
T 3pc3_A 383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM----------------- 445 (527)
T ss_dssp TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-----------------
T ss_pred CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-----------------
Confidence 578999999999999999 9999999999999999999999 78999999999998765431
Q ss_pred HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeC-----CeEeEeee
Q 041090 193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTG-----SKIQGILT 267 (294)
Q Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----g~~vGivt 267 (294)
......++.++|.+ +++++.+++++.+++++|.++++ +||+|+ |+++||||
T Consensus 446 --------------------~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT 501 (527)
T 3pc3_A 446 --------------------NRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALAT 501 (527)
T ss_dssp --------------------CCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEE
T ss_pred --------------------cCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEE
Confidence 11234679999977 99999999999999999976654 799984 89999999
Q ss_pred hhHHHHHHHHcc
Q 041090 268 SKDVLMRVVAQN 279 (294)
Q Consensus 268 ~~Dil~~~~~~~ 279 (294)
+.||++.+....
T Consensus 502 ~~Dll~~l~~~~ 513 (527)
T 3pc3_A 502 KLDVTTFIAAGK 513 (527)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhcc
Confidence 999996665544
No 105
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.56 E-value=6.8e-16 Score=142.87 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=1.8
Q ss_pred hhcc-ccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC--
Q 041090 53 VKKL-RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN-- 126 (294)
Q Consensus 53 v~dl-~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~-- 126 (294)
..++ |.++++++++++|+.+|+++|.+++++.+||+|++ ++++|+||.+|+++. ......+++++|.++
T Consensus 98 ~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~~~~~~~V~diM~~~~~ 172 (503)
T 1me8_A 98 NFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-----LTQTETKVSDMMTPFSK 172 (503)
T ss_dssp TTTC----------------------------------------------------------------------------
T ss_pred hcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-----hccccCcHHHHhCCCCC
Confidence 3444 99999999999999999999999999999999987 899999999999632 122356899999877
Q ss_pred CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
++++++++++.+++++|.+++++.+||+| +|+++|+||..|+++..
T Consensus 173 ~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~ 219 (503)
T 1me8_A 173 LVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ 219 (503)
T ss_dssp -----------------------------------------------
T ss_pred CEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhh
Confidence 89999999999999999999999999999 89999999999998754
No 106
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.55 E-value=1.2e-14 Score=133.50 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=105.8
Q ss_pred CCcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhH
Q 041090 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAI 186 (294)
Q Consensus 113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~ 186 (294)
.+.+.+++++|.++++++++++++.++++.|.+. ++.++||+| +++++|+++..|++..
T Consensus 151 ~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------------- 215 (473)
T 2zy9_A 151 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------- 215 (473)
T ss_dssp TSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred cCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence 4456789999999999999999999999999875 478999999 8999999999998742
Q ss_pred HHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090 187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI 265 (294)
Q Consensus 187 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi 265 (294)
....++.++|.+ +++++++++++.+++++|.+++++.+||+| +|+++|+
T Consensus 216 ----------------------------~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGi 265 (473)
T 2zy9_A 216 ----------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI 265 (473)
T ss_dssp ----------------------------CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred ----------------------------CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEE
Confidence 123679999977 899999999999999999999999999999 7999999
Q ss_pred eehhHHHHHHHH
Q 041090 266 LTSKDVLMRVVA 277 (294)
Q Consensus 266 vt~~Dil~~~~~ 277 (294)
||..|+++.+..
T Consensus 266 IT~~Dil~~i~~ 277 (473)
T 2zy9_A 266 VTVDDVLDVLEA 277 (473)
T ss_dssp EEHHHHHHHHHH
T ss_pred EehHhhHHHHHH
Confidence 999999965543
No 107
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.53 E-value=1.6e-14 Score=97.18 Aligned_cols=65 Identities=32% Similarity=0.551 Sum_probs=61.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHHHccCCCCcceeeecccc
Q 041090 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293 (294)
Q Consensus 229 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~~~ 293 (294)
+++++.+++++.+|+++|.+++++++||+|+|+++||+|.+|++++++..+.++...+|+++|++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~ 65 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK 65 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC
Confidence 36889999999999999999999999999999999999999999999999999999999999974
No 108
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.51 E-value=4.6e-15 Score=141.10 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=102.9
Q ss_pred cccccccccc--cCCeEEcCCCcHHHHHHHHH-hCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhc--hhHHH
Q 041090 115 DQTVVSKIMT--RNPIFVTSDSLAIEALQKMV-QGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQG--SAIAA 188 (294)
Q Consensus 115 ~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~--~~~~~ 188 (294)
...+++++|. +++.++++++++.++.+.|. +++++.+||+| +++++|+|+..|+++............. .....
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence 3578999999 88899999999999999999 79999999999 8999999999999875433211100000 00000
Q ss_pred HHHHHHHhhCCCCCChhhhH---------HHHHHh-hcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090 189 AVEGVERQWGSNFSAPYAFI---------ETLRER-MFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258 (294)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~---------~~~~~~-~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (294)
... .+............. +..... ....++.++|.+ +++++++++++.+++++|.+++++.+||++
T Consensus 531 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVve 606 (632)
T 3org_A 531 LLD--AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVTE 606 (632)
T ss_dssp ------------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEEE
T ss_pred ccC--HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEEE
Confidence 000 000000000000000 000000 001137889977 999999999999999999999999999999
Q ss_pred CCeEeEeeehhHHHH
Q 041090 259 GSKIQGILTSKDVLM 273 (294)
Q Consensus 259 ~g~~vGivt~~Dil~ 273 (294)
+|+++|+||++|+++
T Consensus 607 ~G~lvGIVT~~Dll~ 621 (632)
T 3org_A 607 RGKLVGIVEREDVAY 621 (632)
T ss_dssp TTEEEEEEEGGGTEE
T ss_pred CCEEEEEEehhhHHH
Confidence 999999999999984
No 109
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.51 E-value=1.8e-13 Score=126.72 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=105.7
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-CCe
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTD--ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-NPI 128 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d--~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~ 128 (294)
.++++|.++++++++++++.+|++.|.+++++.+||+| ++++++|+||.+|++.. . ....++.++|.+ +++
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~-~~~~~v~~im~~~~~~ 164 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----S-DYNAPISEHMTSEHLV 164 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----S-CSSSBTTTSCCCSCCC
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----c-cCCCcHHHHcCCCCCE
Confidence 46889999999999999999999999999999999999 78999999999999632 1 236789999988 888
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
++++++++.++++.|.+++++.+||+| +|+++|++|..|+++...
T Consensus 165 ~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 165 TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp CEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence 999999999999999999999999999 899999999999998754
No 110
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.49 E-value=1.5e-14 Score=133.30 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=90.2
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-c-CCeE
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-R-NPIF 129 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~~ 129 (294)
+++++|..+++++++++|+.+|+++|.+++++.+||+|++++++|+||.+|++. ......++.++|. . ++++
T Consensus 90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~------~~~~~~~v~diM~p~~~~vt 163 (496)
T 4fxs_A 90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF------VTDLTKSVAAVMTPKERLAT 163 (496)
T ss_dssp HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT------CCCTTSBGGGTSEEGGGCCE
T ss_pred ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh------cccCCCcHHHHhcCCCCCEE
Confidence 456789999999999999999999999999999999999999999999999951 1233678999998 4 5889
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+++++++.+++++|.+++++.+||+| +|+++|+||..|+++.
T Consensus 164 v~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 164 VKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA 206 (496)
T ss_dssp EECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence 99999999999999999999999999 8999999999999875
No 111
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.46 E-value=1.3e-13 Score=92.63 Aligned_cols=70 Identities=26% Similarity=0.535 Sum_probs=62.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV 130 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 130 (294)
+++++.+++|+.+|+++|.+++++++||+| +|+++|++|.+||+++++.++.+....+++++|.++++++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence 467899999999999999999999999998 6899999999999888877777777789999999887653
No 112
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.42 E-value=1.5e-14 Score=133.94 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=5.5
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeE
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIF 129 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~ 129 (294)
+++++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+++. .....++.++|.+ ++++
T Consensus 96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~------~~~~~~v~~im~~~~~~~~ 169 (494)
T 1vrd_A 96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE------KNLSKKIKDLMTPREKLIV 169 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh------cCCCCcHHHHhCCCCCCeE
Confidence 4688899999999999999999999999999999999988999999999999631 1135689999987 8999
Q ss_pred EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090 130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI 173 (294)
Q Consensus 130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~ 173 (294)
+.+++++.+++++|.+++++.+||+| +|+++|++|..|+++...
T Consensus 170 v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 170 APPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp ---------------------------------------CHHHHT
T ss_pred ECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence 99999999999999999999999999 899999999999998754
No 113
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.41 E-value=7e-14 Score=128.78 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=3.2
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-c-CCe
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-R-NPI 128 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~ 128 (294)
.+++++|..+++++++++|+.+|+++|.+++++.+||+| +++++|+||.+|+.. . .....++.++|. + +++
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~-~-----~~~~~~V~~vMtp~~~~v 160 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRV-K-----PNAGDTVAAIMTPKDKLV 160 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhh-c-----cccCCcHHHHhccCCCCE
Confidence 356788999999999999999999999999999999999 899999999999942 1 123568999998 4 689
Q ss_pred EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
++++++++.+++++|.+++++.+||+| +|+++|+||..|+++.
T Consensus 161 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 204 (490)
T 4avf_A 161 TAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA 204 (490)
T ss_dssp --------------------------------------------
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence 999999999999999999999999999 8999999999999875
No 114
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.39 E-value=1.1e-12 Score=121.24 Aligned_cols=117 Identities=16% Similarity=0.295 Sum_probs=101.1
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
...+.|..+++++.+++++.+++++|.+++++++||++ +++++|+|+..||..
T Consensus 114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------------------------ 169 (511)
T 3usb_A 114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------------------------ 169 (511)
T ss_dssp TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------------------------
T ss_pred ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------------------------
Confidence 34566777889999999999999999999999999998 579999999999852
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
......++.++|.+ .+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|+++
T Consensus 170 ------------------~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~ 230 (511)
T 3usb_A 170 ------------------IQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEK 230 (511)
T ss_dssp ------------------CCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred ------------------hccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHH
Confidence 01234678999963 3789999999999999999999999999999 899999999999996
Q ss_pred HHHH
Q 041090 274 RVVA 277 (294)
Q Consensus 274 ~~~~ 277 (294)
.+..
T Consensus 231 ~~~~ 234 (511)
T 3usb_A 231 VIEF 234 (511)
T ss_dssp HHHC
T ss_pred hhhc
Confidence 6544
No 115
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.38 E-value=4.1e-14 Score=128.09 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred cccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC
Q 041090 56 LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS 132 (294)
Q Consensus 56 l~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 132 (294)
.|..+++++.|+.||.+|+++|.+++++.+||+|+ +++++||+|.+|+. . .+ ...+++++|.+++++++.
T Consensus 143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f-----~d-~~~~V~evMT~~lvt~~~ 215 (556)
T 4af0_A 143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-F-----QD-AETPIKSVMTTEVVTGSS 215 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-c-----cc-cceEhhhhcccceEEecC
Confidence 35568899999999999999999999999999986 68999999999983 2 12 257899999999999999
Q ss_pred CCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 133 DSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+.++.+|.++|.++++..+||+| +++++|+||..|+++.
T Consensus 216 ~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 216 PITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN 255 (556)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence 99999999999999999999999 9999999999999864
No 116
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.36 E-value=2.2e-13 Score=125.62 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=88.5
Q ss_pred cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195 (294)
Q Consensus 117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (294)
..+.++|..+++++++++++.+++++|.+++++.+||++ +++++|+||..||+..
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------------ 144 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------------ 144 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------------
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------------
Confidence 355677888999999999999999999999999999999 8999999999998510
Q ss_pred hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
.....++.++|.+..+++++++++++.+++++|.+++++.+||+| +|+++|+||++|+++.
T Consensus 145 ------------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 145 ------------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA 206 (496)
T ss_dssp ------------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred ------------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence 113467899997212489999999999999999999999999999 8999999999999954
No 117
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.34 E-value=8.3e-14 Score=128.29 Aligned_cols=117 Identities=24% Similarity=0.330 Sum_probs=3.1
Q ss_pred cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ 196 (294)
Q Consensus 117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (294)
..++++|..+++++++++++.+++++|.+++++.+||+++++++|+||..||....
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~------------------------ 143 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKP------------------------ 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhcc------------------------
Confidence 45677888889999999999999999999999999999988999999999985210
Q ss_pred hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
....++.++|.+..+++++++++++.+++++|.+++++.+||+| +|+++|+||++|+++..
T Consensus 144 ------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 144 ------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence 12356889996212599999999999999999999999999999 89999999999999554
No 118
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.33 E-value=3.1e-13 Score=124.70 Aligned_cols=111 Identities=25% Similarity=0.435 Sum_probs=1.5
Q ss_pred chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEc
Q 041090 52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVT 131 (294)
Q Consensus 52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 131 (294)
.+.++|..+++++++++++.+++++|.+++++.+||+|+ ++++|+++.+|++. . ...++.++|.+++++++
T Consensus 94 ~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-------~-~~~~v~~im~~~~~~v~ 164 (486)
T 2cu0_A 94 RAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-------R-EGKLVKELMTKEVITVP 164 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-------C-CCCCHHHHccCCCeEEC
Confidence 346788889999999999999999999999999999997 99999999999963 1 35689999988888999
Q ss_pred CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090 132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD 171 (294)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~ 171 (294)
+++++.++++.|.+++++.+||+| +|+++|++|..|+++.
T Consensus 165 ~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR 205 (486)
T ss_dssp -----------------------------------------
T ss_pred CcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence 999999999999999999999999 8999999999999864
No 119
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.32 E-value=1.6e-13 Score=126.99 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198 (294)
Q Consensus 123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 198 (294)
|.++++++++++++.+++++|.+++++++||++ + ++++|+|+..|++.. .
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~------------------------ 156 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L------------------------ 156 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h------------------------
Confidence 778899999999999999999999999999999 5 899999999999742 0
Q ss_pred CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~ 277 (294)
.....++.++|.+..+++++++++++.+|+++|.+++++.+||+| +|+++|+||.+||++.+..
T Consensus 157 ---------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 157 ---------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence 012356889997722399999999999999999999999999999 8999999999999966654
No 120
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.31 E-value=1.3e-11 Score=114.28 Aligned_cols=116 Identities=18% Similarity=0.306 Sum_probs=100.6
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE 194 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (294)
.+.++|..+++++.+++++.++++.|.+++++.+||++ +++++|+|+..|++..
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~----------------------- 147 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI----------------------- 147 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----------------------
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----------------------
Confidence 35678888999999999999999999999999999997 6899999999998642
Q ss_pred HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090 195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM 273 (294)
Q Consensus 195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~ 273 (294)
.....++.++|.+ .+++++++++++.+++++|.+++++.+||+| +|+++|+||+.||++
T Consensus 148 -------------------~~~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~ 207 (491)
T 1zfj_A 148 -------------------SDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEK 207 (491)
T ss_dssp -------------------SCSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred -------------------ccCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHH
Confidence 0123678899952 2688999999999999999999999999999 899999999999995
Q ss_pred HHH
Q 041090 274 RVV 276 (294)
Q Consensus 274 ~~~ 276 (294)
.+.
T Consensus 208 ~~~ 210 (491)
T 1zfj_A 208 VIE 210 (491)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 121
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.29 E-value=2.6e-13 Score=125.61 Aligned_cols=118 Identities=22% Similarity=0.380 Sum_probs=5.6
Q ss_pred ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ 196 (294)
Q Consensus 118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (294)
.+.++|.++++++.+++++.++++.|.+++++.+||+| +++++|+||..|++...
T Consensus 96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------ 151 (494)
T 1vrd_A 96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------ 151 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence 45678888999999999999999999999999999999 78999999999986410
Q ss_pred hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090 197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~ 275 (294)
....++.++|.+..++.++.+++++.+++++|.+++++.+||+| +|+++|+||..|+++.+
T Consensus 152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 213 (494)
T 1vrd_A 152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213 (494)
T ss_dssp ---------------------------------------------------------------------------CHHHH
T ss_pred ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence 01246888885333789999999999999999999999999999 89999999999999665
Q ss_pred HH
Q 041090 276 VA 277 (294)
Q Consensus 276 ~~ 277 (294)
..
T Consensus 214 ~~ 215 (494)
T 1vrd_A 214 EH 215 (494)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 122
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.24 E-value=6.8e-13 Score=120.19 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW 197 (294)
Q Consensus 122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (294)
.+..+|+++.++.++.+++++|.+++++.+||+++ ++++||+|.+|+...
T Consensus 143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------------------------- 196 (556)
T 4af0_A 143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------------------------- 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--------------------------
Confidence 35568899999999999999999999999999983 689999999997421
Q ss_pred CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090 198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV 276 (294)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~ 276 (294)
....++.++|.+ ++++++.+.++.+|.++|.++++..+|||| +|+++|+||++|+++.-.
T Consensus 197 -----------------d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 197 -----------------DAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------ccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence 012578999987 899999999999999999999999999999 899999999999985443
No 123
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=99.23 E-value=2.3e-11 Score=81.49 Aligned_cols=65 Identities=32% Similarity=0.551 Sum_probs=58.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHHHccCCCCcceeeecccc
Q 041090 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293 (294)
Q Consensus 229 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~~~ 293 (294)
++.++.+++++.+|+++|.+++++.+||+|+|+++|+||.+|+++.+...+......+|+++|++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~~ 65 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK 65 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcCC
Confidence 36789999999999999999999999999999999999999999777677666678899999964
No 124
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.22 E-value=1.6e-13 Score=127.60 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=69.5
Q ss_pred cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--
Q 041090 51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-- 125 (294)
Q Consensus 51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-- 125 (294)
.++.++|.++++++.+++++.+|+++|.+++++.+||+|+ +++++|+||.+|+.. .. . .....++.++|.+
T Consensus 108 ~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~-~~-~--~~~~~~v~~vm~~~~ 183 (514)
T 1jcn_A 108 KNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF-LA-E--KDHTTLLSEVMTPRI 183 (514)
T ss_dssp HTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CCB
T ss_pred hhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh-hh-h--ccCCCCHHHHhCCCC
Confidence 3567899999999999999999999999999999999997 589999999999953 21 0 1235689999988
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA 172 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~ 172 (294)
+++++.+++++.+++++|.+++++.+||+| +|+++|++|..|+++..
T Consensus 184 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 184 ELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp CCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 899999999999999999999999999999 89999999999987643
No 125
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=99.17 E-value=6.8e-11 Score=79.14 Aligned_cols=69 Identities=26% Similarity=0.528 Sum_probs=58.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090 60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129 (294)
Q Consensus 60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 129 (294)
+++++.+++++.+|++.|.+++++.+||+|+ |+++|++|.+|+++.+...+......+++++|.+++++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~ 69 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVK 69 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTC
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcCCCCeE
Confidence 3578999999999999999999999999997 99999999999987665554434567899999877654
No 126
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.13 E-value=4.9e-12 Score=116.70 Aligned_cols=109 Identities=26% Similarity=0.297 Sum_probs=0.4
Q ss_pred ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCC
Q 041090 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGS 199 (294)
Q Consensus 120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 199 (294)
.+.|..+++++.+++++.++++.|.+++++++||+++++++|+|+..|++. .
T Consensus 96 ~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~---~------------------------- 147 (486)
T 2cu0_A 96 ERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA---R------------------------- 147 (486)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc---C-------------------------
Confidence 446777888999999999999999999999999999889999999999863 0
Q ss_pred CCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090 200 NFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR 274 (294)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~ 274 (294)
...++.++|.+ +++++++++++.+++++|.+++++.+||+| +|+++|+||..||++.
T Consensus 148 ----------------~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 148 ----------------EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR 205 (486)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ----------------CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence 12468888976 899999999999999999999999999999 8999999999999954
No 127
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.11 E-value=1.9e-12 Score=120.39 Aligned_cols=131 Identities=13% Similarity=0.208 Sum_probs=74.5
Q ss_pred eHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHH
Q 041090 99 TDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAIS 174 (294)
Q Consensus 99 t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~ 174 (294)
+..++...+ .+ ...+.++|.++++++.+++++.+++++|.+++++.+||+|+ ++++|+||..|+.....
T Consensus 96 t~e~~~~~v-~~-----v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~- 168 (514)
T 1jcn_A 96 TPEFQANEV-RK-----VKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE- 168 (514)
T ss_dssp CHHHHHHHH-HH-----HHTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-----
T ss_pred CHHHHHHHH-Hh-----hhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-
Confidence 667665332 11 23577888888999999999999999999999999999984 79999999999864210
Q ss_pred HHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCcee
Q 041090 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSA 254 (294)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l 254 (294)
.....++.++|.+..+++++.+++++.+++++|.+++++.+
T Consensus 169 ---------------------------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~l 209 (514)
T 1jcn_A 169 ---------------------------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKL 209 (514)
T ss_dssp ---------------------------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCC
T ss_pred ---------------------------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcc
Confidence 01235688888532378999999999999999999999999
Q ss_pred EEee-CCeEeEeeehhHHHHHH
Q 041090 255 LIVT-GSKIQGILTSKDVLMRV 275 (294)
Q Consensus 255 pVvd-~g~~vGivt~~Dil~~~ 275 (294)
||+| +|+++|+||++|+++.+
T Consensus 210 pVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 210 PIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp CEESSSSCCC----CCCCSSCC
T ss_pred cEECCCCeEEEEEEHHHHHHHh
Confidence 9999 89999999999998443
No 128
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.57 E-value=4.5e-08 Score=81.94 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=50.8
Q ss_pred cccchhcccc-CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 041090 49 GERTVKKLRL-SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106 (294)
Q Consensus 49 ~~~~v~dl~~-~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~ 106 (294)
...+|+++|+ ++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++++
T Consensus 183 ~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~ 241 (245)
T 3l2b_A 183 QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241 (245)
T ss_dssp GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence 4678999999 899999999999999999999999999999999999999999999753
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=82.13 E-value=3.3 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=30.9
Q ss_pred ceeEEee-CCeEeEeeehhHHHHHHHHccC------CCCcceeeecc
Q 041090 252 NSALIVT-GSKIQGILTSKDVLMRVVAQNL------SPELTLVERFI 291 (294)
Q Consensus 252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~------~~~~~~v~~~~ 291 (294)
..+-+++ +|..+|++++.+.++..-..++ +.-.+||=++|
T Consensus 14 ~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~a~PPVCkIm 60 (78)
T 1tif_A 14 REVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIM 60 (78)
T ss_dssp SEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEE
T ss_pred CEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEECCCCCCCEEEEe
Confidence 3466777 8999999999999977777777 33466777777
No 130
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=67.51 E-value=16 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC
Q 041090 81 RVDAVLLTDANALLSGIVTDKDITTRVIAEG 111 (294)
Q Consensus 81 ~~~~lpV~d~~~~~~Givt~~di~~~~~~~~ 111 (294)
+...+-+++++|..+|+++..+-++..-..+
T Consensus 12 r~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~ 42 (78)
T 1tif_A 12 RAREVRLIDQNGDQLGIKSKQEALEIAARRN 42 (78)
T ss_dssp CCSEEEEECTTSCEEEEEEHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcC
Confidence 3566889999999999999999875444444
No 131
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=45.87 E-value=9.8 Score=28.70 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090 238 PVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272 (294)
Q Consensus 238 ~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil 272 (294)
.+.+.++.+.+.+-..+.|-.+|+++|+|...|.+
T Consensus 120 ~~~~~~~~la~~G~T~v~VA~d~~l~GvIalaD~i 154 (156)
T 1svj_A 120 DVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTEEEEEEEEEECC
T ss_pred HHHHHHHHHHhCCCCEEEEEECCEEEEEEEEecCC
Confidence 36777778888888888777799999999998865
No 132
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=35.38 E-value=65 Score=19.59 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCC
Q 041090 66 EGTIVSDACRRMASRRVDAVLLTDAN 91 (294)
Q Consensus 66 ~~~sv~~a~~~~~~~~~~~lpV~d~~ 91 (294)
+-+|++||+..|...++..+.-.|.+
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~n~~ 36 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYTDAE 36 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEBSS
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCC
Confidence 45789999999999999988888865
No 133
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=33.35 E-value=73 Score=20.00 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEE
Q 041090 66 EGTIVSDACRRMASRRVDAVLLTDANALLSGIV 98 (294)
Q Consensus 66 ~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Giv 98 (294)
+-+|++||+..|...+...+.-.|.+..-+.+|
T Consensus 11 kpMsveEAv~qmel~gh~F~vF~n~etg~~nVV 43 (65)
T 3ka5_A 11 KPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVV 43 (65)
T ss_dssp SCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEE
Confidence 457899999999999998888888653344444
No 134
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=29.70 E-value=80 Score=19.87 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCC
Q 041090 66 EGTIVSDACRRMASRRVDAVLLTDAN 91 (294)
Q Consensus 66 ~~~sv~~a~~~~~~~~~~~lpV~d~~ 91 (294)
+-+|++||+..|...+...+.-.|.+
T Consensus 12 kpMsveEAv~qMel~gh~F~vF~n~e 37 (66)
T 3lyv_A 12 KPMDVEEARLQMELLGHDFFIYTDSE 37 (66)
T ss_dssp CEECHHHHHHHHHTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHcCCCcEEEEEeCC
Confidence 35689999999999999988888865
No 135
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=27.11 E-value=47 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred EEEEEcCCCcEEEEEeHH
Q 041090 84 AVLLTDANALLSGIVTDK 101 (294)
Q Consensus 84 ~lpV~d~~~~~~Givt~~ 101 (294)
..||.+++|+++|++...
T Consensus 105 ~~PV~~~~g~viGvv~vg 122 (131)
T 1p0z_A 105 KSPIQDATGKVIGIVSVG 122 (131)
T ss_dssp EEEEECTTCCEEEEEEEE
T ss_pred EEeEECCCCCEEEEEEEE
Confidence 468998789999998753
No 136
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=26.37 E-value=66 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCcEEEEEECCEEEEEEehHHH
Q 041090 136 AIEALQKMVQGKFRHLPVVENGEVIAILDITKC 168 (294)
Q Consensus 136 l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dl 168 (294)
+.+..+.+...+...+.|..+++++|+|...|-
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d~~l~GvIalaD~ 153 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEGSRVLGVIALKDI 153 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEEECCEEEEEEEEecC
Confidence 666677777778777777779999999987764
No 137
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=26.10 E-value=49 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.8
Q ss_pred EEEEEcCCCcEEEEEeHH
Q 041090 84 AVLLTDANALLSGIVTDK 101 (294)
Q Consensus 84 ~lpV~d~~~~~~Givt~~ 101 (294)
..||.+++|+++|+++..
T Consensus 110 ~~PV~~~~g~viGvv~vg 127 (142)
T 3by8_A 110 FTPIYDENHKQIGVVAIG 127 (142)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEeEEcCCCCEEEEEEEe
Confidence 469998789999998754
No 138
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.52 E-value=1.1e+02 Score=20.33 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHh--CCceeEEee--CCeEeEeeehhHHHHHHHH
Q 041090 241 VAAKKMREF--RSNSALIVT--GSKIQGILTSKDVLMRVVA 277 (294)
Q Consensus 241 ~a~~~m~~~--~~~~lpVvd--~g~~vGivt~~Dil~~~~~ 277 (294)
++.+.|.+. |.+.+|++- +|++++--+..+|..++..
T Consensus 41 ~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~e 81 (92)
T 2lqo_A 41 AAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVK 81 (92)
T ss_dssp HHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHH
Confidence 344444443 678899874 7888877888888754443
No 139
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=21.49 E-value=46 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=17.1
Q ss_pred CCceeEEee-CCeEeEeeehhHHH
Q 041090 250 RSNSALIVT-GSKIQGILTSKDVL 272 (294)
Q Consensus 250 ~~~~lpVvd-~g~~vGivt~~Dil 272 (294)
+-+.-||+| +|+++||-+..|=.
T Consensus 125 GdSGsPVvn~dG~VIGVHt~s~~~ 148 (213)
T 3fan_A 125 GDSGSPVITEAGELVGVHTGSNKQ 148 (213)
T ss_dssp CSTTCEEEETTSCEEEEEEC----
T ss_pred CCCCCccCCCCCcEEEEEeccCCc
Confidence 567889999 99999999987753
No 140
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=20.46 E-value=2.5e+02 Score=22.57 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHh----CCCCEEEEEcCCCcEEEEEe--------HHHHHHHHHH--cCCCCcccccccccc-----c
Q 041090 65 PEGTIVSDACRRMAS----RRVDAVLLTDANALLSGIVT--------DKDITTRVIA--EGLRPDQTVVSKIMT-----R 125 (294)
Q Consensus 65 ~~~~sv~~a~~~~~~----~~~~~lpV~d~~~~~~Givt--------~~di~~~~~~--~~~~~~~~~v~~~~~-----~ 125 (294)
+++..+.+++.++.. ..++.+.|+|.+|+++.... ..++++.+-. .........-.++ . .
T Consensus 103 D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~~~~~~~~~Pa~W-~~~~~~g 181 (249)
T 3a2v_A 103 DPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADW-PNNEIIG 181 (249)
T ss_dssp CTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHTCBBCTTT-TSBTTTB
T ss_pred CCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHhccccCccCCCCC-CCCCCCC
Confidence 444455555544321 15678899999999988763 4566543311 0000011222333 2 3
Q ss_pred CCeEEcCCCcHHHHHHHHHhCCCcE
Q 041090 126 NPIFVTSDSLAIEALQKMVQGKFRH 150 (294)
Q Consensus 126 ~~~~v~~~~~l~~~~~~~~~~~~~~ 150 (294)
.-..+++..+..++.+.+.+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (249)
T 3a2v_A 182 EGLIVPPPTTEDQARARMESGQYRS 206 (249)
T ss_dssp TCEEECCCCSHHHHHHHHHHTCSEE
T ss_pred CCeecCCCCCHHHHHHhcccCCCcc
Confidence 4456677778899988887545544
Done!