BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041094
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61508|ECM1_MOUSE Extracellular matrix protein 1 OS=Mus musculus GN=Ecm1 PE=1 SV=2
Length = 559
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 33/209 (15%)
Query: 99 LKEEPLFEKKEN----PSEEEIKENEEWWKSF------RESPVV--QFMARAEEIADYLN 146
L + PLFE++ S E+I EE W +F + P V + + +E
Sbjct: 68 LHDPPLFEEQREVQPPSSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKEQPPPQV 127
Query: 147 EVELKKNDKPYRPEDKKLWRAL-PHVIGLDGRPMPRKAIKTKEESDDKFWD---FMKQFQ 202
+E K+ D P +P+++ + + + PH + P PR W+ +Q +
Sbjct: 128 HIEQKEIDPPAQPQEEIVQKEVKPHTLAGQLPPEPRT------------WNPARHCQQGR 175
Query: 203 FGLWGFRQRPYPPGRPI--DVAQAIGYKRLEKRYYDFIMRSGGWYYKDRLGRTRGPLEL- 259
G+WG R +PPGRP ++ Q +R Y + + G+ + R G T LE
Sbjct: 176 RGVWGHRLDGFPPGRPSPDNLKQICLPERQHVIYGPWNLPQTGYSHLSRQGETLNVLETG 235
Query: 260 --ITLKTAWGAGIIDKDTFIWGEDMDEWV 286
+ +D +W + M ++
Sbjct: 236 YSRCCRCRSDTNRLDCLKLVWEDAMTQFC 264
>sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis
thaliana GN=ATXR3 PE=1 SV=2
Length = 2335
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 236 DFIMRSGGWYYKDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDMDEWVPIHMVYGLE 295
D + G W+Y D G+ +GPL L+ G I + ++ + WVP+ +
Sbjct: 975 DLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTSITKSP 1034
Query: 296 KAIA 299
+ IA
Sbjct: 1035 ETIA 1038
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 242 GGWYYKDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDMDEWV 286
G W+Y D G GP L LK GI+ D I D + W+
Sbjct: 628 GKWFYLDYYGTEHGPARLSDLKALMEQGILFSDHMIKHSDNNRWL 672
>sp|A7E727|IML2_SCLS1 Mitochondrial outer membrane protein iml2 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=iml2
PE=3 SV=1
Length = 645
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 116 IKENEEWWKSFRESPVVQFMARAEEIADYLNEVELKKNDKPYRPEDKKLWRALPHVIGLD 175
+ E+EE E+ +++ + E AD L LKK+D Y + + L ++G++
Sbjct: 16 VAESEEQHLRDVEAAMLKLLNDDIEEADKL----LKKHDSSYHHLGRGISGFLSAMMGVE 71
Query: 176 GRPMPRKAIKTKEESDDKFWDFMKQFQFGLWGFRQRPYPPG 216
+ + ++A +++++K WD MK+ Q F+ YP G
Sbjct: 72 -KDLLKEAAVILQDAENKSWDDMKKAQKDSTAFQSNIYPQG 111
>sp|P55158|MTP_MESAU Microsomal triglyceride transfer protein large subunit
OS=Mesocricetus auratus GN=MTTP PE=2 SV=1
Length = 895
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 110/279 (39%), Gaps = 42/279 (15%)
Query: 270 IIDKDTFIWGEDMDEWVPIHMVYGLEKAIATWE--------VRLGAAATAFLHKLQKGIP 321
II KD E + V +H+V G K ++E ++ G A+ F +L G
Sbjct: 110 IIGKDNL---EALQRPVLLHLVRGKVKEFYSYENEPVGIENLKRGLASL-FQMQLSSGTT 165
Query: 322 PWVPLKGHEKKTYKQLQEEAMESRRRDNAVLQANGGVWP----GVRIPSHALFLWASGSE 377
V + G K TY+ Q++ ++++ D ++ +G GV + ++ +
Sbjct: 166 NEVDISGDCKVTYQAQQDKVVKTKALDTCKIERSGFTTVNQVLGVSSKATSVTTYKIEDS 225
Query: 378 LTTMLEADH-----------MPNKFIPKD-LRLQLSKIIPGLRPW-EVLSVEQAMDQITY 424
T + A+ + K + K L L+ ++ P + P +V V +A+D
Sbjct: 226 FVTAVHAEETRDFSLNFLQAIAGKIVSKQKLELKTTEAGPRMVPGKQVAGVIKALDSKYT 285
Query: 425 GGEWYREPLGSHTTGPPYIREWNVDILEFVRVLDILRTGALNSLLEKVPGFNTIVERLKA 484
+ L S G P + E I + + ++ A++S L + T
Sbjct: 286 AIPIVGQVLQSACQGCPSLAEHWQSIRKHLEPENLSNAKAVSSFLAFIQHLRT------- 338
Query: 485 ENEAKEARREKRMEALIKEKQEKMDAMVKAKNGSNPSDP 523
ARRE+ ++ L EK+E + +V A + D
Sbjct: 339 ------ARREEILQILKAEKKEVLPQLVDAVTSAQTPDS 371
>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1
SV=5
Length = 2243
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 244 WYYKDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDMDEWVPIHMV 291
WY+ + GP ++ W G+++ T W + MD W P+ +
Sbjct: 976 WYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPLQSI 1023
>sp|Q73MC2|SYD_TREDE Aspartate--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=aspS PE=3 SV=1
Length = 590
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 247 KDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDMDEWVPIHMVYGL--EKAIATWE 302
+ +LG+ G L K AW I+D F W E+ ++W P H ++ EK IAT E
Sbjct: 414 RSKLGKDLGLLNPAEFKFAW---IVDFPLFEWNEEENKWDPAHHMFSAPQEKYIATME 468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,071,304
Number of Sequences: 539616
Number of extensions: 10469696
Number of successful extensions: 33110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 32886
Number of HSP's gapped (non-prelim): 272
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)