Query 041094
Match_columns 523
No_of_seqs 31 out of 33
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 05:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh2_A Hypothetical protein AT 97.4 6.2E-05 2.1E-09 61.2 2.6 48 242-289 18-65 (78)
2 3k3v_A Protein SMY2; GYF domai 95.9 0.0039 1.3E-07 53.3 2.9 53 241-293 15-75 (100)
3 3g20_A Type II secretion prote 82.5 0.19 6.6E-06 43.1 -0.7 37 380-422 1-37 (123)
4 1syx_B CD2BP2, CD2 antigen cyt 79.5 1.2 4.2E-05 37.1 3.1 50 242-291 26-80 (86)
5 1oqw_A Fimbrial protein; type 71.0 0.49 1.7E-05 40.0 -1.5 40 378-419 12-51 (144)
6 2hi2_A Fimbrial protein; type 64.0 1.3 4.5E-05 37.5 -0.2 31 378-409 12-42 (158)
7 3sok_A Fimbrial protein; pilus 59.6 0.79 2.7E-05 39.4 -2.4 31 378-409 12-42 (151)
8 1x6z_A Fimbrial protein; type 41.7 4.1 0.00014 33.2 -0.7 28 390-418 2-29 (123)
9 3uv4_A Second bromodomain of h 25.9 87 0.003 27.5 5.0 33 408-456 69-101 (158)
10 3bvx_A Alpha-mannosidase 2; fa 22.8 1.5E+02 0.0052 32.9 7.2 79 421-502 397-502 (1045)
11 2c1w_A Endou protein, xendou; 21.7 1E+02 0.0036 30.3 5.1 33 107-139 90-122 (292)
12 3jyz_A Type IV pilin structura 21.3 31 0.0011 29.9 1.2 21 391-411 2-22 (150)
13 2qdq_A Talin-1; dimerisation d 21.1 1.5E+02 0.0051 23.0 4.8 34 487-522 12-45 (50)
14 3di5_A DINB-like protein; stru 20.9 20 0.00069 29.5 -0.0 48 434-483 1-48 (168)
No 1
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=97.41 E-value=6.2e-05 Score=61.19 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=45.4
Q ss_pred CceEeecCCCCCCCCCchHHHHHHHhcCcccCCcccccCCCCcchhhh
Q 041094 242 GGWYYKDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDMDEWVPIH 289 (523)
Q Consensus 242 n~WYYaDr~rq~RGPv~l~tLr~~w~~GIID~dTLVWgEGLdqWvPL~ 289 (523)
-.|||+|.+|+.+||.+...|+.=+.+|-...+..||+.|-.+|.++.
T Consensus 18 ~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~ 65 (78)
T 1wh2_A 18 LNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL 65 (78)
T ss_dssp CCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE
T ss_pred CeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh
Confidence 489999999999999999999999999999999999999988887765
No 2
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=95.90 E-value=0.0039 Score=53.27 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=48.3
Q ss_pred cCceEeecCCCCCCCCCchHHHHHHHhcCcccCCcccccCCC--------Ccchhhhhhhh
Q 041094 241 SGGWYYKDRLGRTRGPLELITLKTAWGAGIIDKDTFIWGEDM--------DEWVPIHMVYG 293 (523)
Q Consensus 241 ~n~WYYaDr~rq~RGPv~l~tLr~~w~~GIID~dTLVWgEGL--------dqWvPL~~V~g 293 (523)
.-.|||+|-+|+.|||-+...|..=+.+|-...+=.|||.+= +.|.+|..+..
T Consensus 15 e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~ 75 (100)
T 3k3v_A 15 ESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMT 75 (100)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHH
T ss_pred cceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHH
Confidence 457999999999999999999999999999999999999753 38999999874
No 3
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=82.48 E-value=0.19 Score=43.06 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=28.6
Q ss_pred hHhhhccCCCCCCchHHHHHHHhhcCCCCCcchhhHHHhhhhh
Q 041094 380 TMLEADHMPNKFIPKDLRLQLSKIIPGLRPWEVLSVEQAMDQI 422 (523)
Q Consensus 380 ~iLaaiamPnkYi~y~~R~klAk~ip~LrP~evlsiEq~MD~i 422 (523)
+||++|++| .|..+..|++.+++...| .+|++|||+-
T Consensus 1 GILAaIa~P-~~~~~~~kak~~~a~a~l-----~~i~~Ale~Y 37 (123)
T 3g20_A 1 GAMASLVVP-NLMGNKDKADRQKVMSDL-----VALESTLDMY 37 (123)
T ss_dssp ----CCCCC-CHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred ChhHHhHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 699999999 999999999999987654 4889999873
No 4
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=79.51 E-value=1.2 Score=37.09 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=44.9
Q ss_pred CceEee---cCCCCCCCCCchHHHHHHHhcCcccCCcccccCC-C-Ccchhhhhh
Q 041094 242 GGWYYK---DRLGRTRGPLELITLKTAWGAGIIDKDTFIWGED-M-DEWVPIHMV 291 (523)
Q Consensus 242 n~WYYa---Dr~rq~RGPv~l~tLr~~w~~GIID~dTLVWgEG-L-dqWvPL~~V 291 (523)
-.|.|+ |..+..+||-+..+|..-..+|-...+-+|.+-| - .+|.++.-|
T Consensus 26 ~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 26 VMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp CEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGC
T ss_pred ceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeee
Confidence 579999 8889999999999999999999999999999988 3 589988765
No 5
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=71.03 E-value=0.49 Score=39.95 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=31.8
Q ss_pred hhhHhhhccCCCCCCchHHHHHHHhhcCCCCCcchhhHHHhh
Q 041094 378 LTTMLEADHMPNKFIPKDLRLQLSKIIPGLRPWEVLSVEQAM 419 (523)
Q Consensus 378 lt~iLaaiamPnkYi~y~~R~klAk~ip~LrP~evlsiEq~M 419 (523)
+++||+++++| .|.+|..|++++++...|+.+. ..+++++
T Consensus 12 Ii~il~~ia~p-~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~ 51 (144)
T 1oqw_A 12 IIGILAAIAIP-QYQNYVARSEGASALASVNPLK-TTVEEAL 51 (144)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTHH-HHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 78999999999 9999999999999987765542 3344444
No 6
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=64.00 E-value=1.3 Score=37.51 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=27.7
Q ss_pred hhhHhhhccCCCCCCchHHHHHHHhhcCCCCC
Q 041094 378 LTTMLEADHMPNKFIPKDLRLQLSKIIPGLRP 409 (523)
Q Consensus 378 lt~iLaaiamPnkYi~y~~R~klAk~ip~LrP 409 (523)
+++||+++++| .|.+|..|+++++++..|+.
T Consensus 12 ii~il~~~~~p-~~~~~~~~~~~~~~~~~~~~ 42 (158)
T 2hi2_A 12 IVGILAAVALP-AYQDYTARAQVSEAILLAEG 42 (158)
T ss_dssp HHHHHHHHHTT-THHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHH
Confidence 78999999999 99999999999998776654
No 7
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=59.59 E-value=0.79 Score=39.36 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=27.5
Q ss_pred hhhHhhhccCCCCCCchHHHHHHHhhcCCCCC
Q 041094 378 LTTMLEADHMPNKFIPKDLRLQLSKIIPGLRP 409 (523)
Q Consensus 378 lt~iLaaiamPnkYi~y~~R~klAk~ip~LrP 409 (523)
+++||+++++| .|.+|..|++++++...++.
T Consensus 12 IigiLaaia~p-~~~~~~~~~~~~~~~~~~~~ 42 (151)
T 3sok_A 12 IIGILAAFAIP-AYNDYIARSQAAEGLTLADG 42 (151)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999 99999999999988765554
No 8
>1x6z_A Fimbrial protein; type IV pilin, lectin, adhesin, structural protein; 0.78A {Pseudomonas aeruginosa} SCOP: d.24.1.1 PDB: 1x6p_A 1dzo_A 1x6r_A 1x6q_A 1x6y_A 1x6x_X 2py0_A*
Probab=41.72 E-value=4.1 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=19.9
Q ss_pred CCCchHHHHHHHhhcCCCCCcchhhHHHh
Q 041094 390 KFIPKDLRLQLSKIIPGLRPWEVLSVEQA 418 (523)
Q Consensus 390 kYi~y~~R~klAk~ip~LrP~evlsiEq~ 418 (523)
+|++|..|+||++++..+.|.-. .||..
T Consensus 2 aYq~Y~~ra~~se~l~~~~~~Kt-aVe~~ 29 (123)
T 1x6z_A 2 LEGTEFARSEGASALASVNPLKT-TVEEA 29 (123)
T ss_dssp ---CCCHHHHHHHHHHHHTTHHH-HHHHH
T ss_pred cchhHHHHHHHHHHHHHhhhhHH-HHHHH
Confidence 69999999999999998888653 24443
No 9
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=25.88 E-value=87 Score=27.47 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCcchhhHHHhhhhhhcCCccccccCCCCCCCCchhhhhhHHHHHHHHH
Q 041094 408 RPWEVLSVEQAMDQITYGGEWYREPLGSHTTGPPYIREWNVDILEFVRV 456 (523)
Q Consensus 408 rP~evlsiEq~MD~ity~~eWYREplgs~tt~p~y~~~wn~dv~~l~~~ 456 (523)
+|.++-+|++-++. |.|.| ..++..||..+|.=
T Consensus 69 ~PMDL~tI~~kl~~------------~~Y~s----~~ef~~Dv~Lif~N 101 (158)
T 3uv4_A 69 NPMDLETIRKNISK------------HKYQS----RESFLDDVNLILAN 101 (158)
T ss_dssp SCCCHHHHHHHHHT------------TCCSS----HHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHc------------CCCCC----HHHHHHHHHHHHHH
Confidence 56555556555544 45655 57888999999863
No 10
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=22.83 E-value=1.5e+02 Score=32.86 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=50.5
Q ss_pred hhhcCCcccccc-------CCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHH--------HHHh------------hcCC
Q 041094 421 QITYGGEWYREP-------LGSHTTGPPYIREWNVDILEFVRVLDILRTGAL--------NSLL------------EKVP 473 (523)
Q Consensus 421 ~ity~~eWYREp-------lgs~tt~p~y~~~wn~dv~~l~~~~~~l~~~~~--------~~l~------------~~~p 473 (523)
.-++.||+|=+- -|.|||+| +++.+|+....+++....|++... +.|. ..||
T Consensus 397 lp~~~Ge~~~~~~~~~~yw~G~yTSr~-~~K~~nR~~e~~L~~aE~l~ala~~~~~~~~~~~L~~~wk~lll~QhHD~i~ 475 (1045)
T 3bvx_A 397 FPTLSGDFFTYADRSDNYWSGYYTSRP-YHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGIT 475 (1045)
T ss_dssp CCEEESCBCSCEEETTEECCGGGTSSH-HHHHHHHHHHHHHHHHHHHHHTSCCCGGGCHHHHHHHHHHHHHHHTBTTTTT
T ss_pred CcccCCcccccccCCcccccceecccH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccCCC
Confidence 557889998642 39999998 789999999988887776654221 1110 1344
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041094 474 GFNTIVERLKAENEAKEARREKRMEALIK 502 (523)
Q Consensus 474 gfd~i~~kv~~d~~~r~~~~~~~~~~~~~ 502 (523)
|=. .+.|..|+..|.++-.+.-++...
T Consensus 476 Gts--~~~V~~d~~~rl~~a~~~~~~l~~ 502 (1045)
T 3bvx_A 476 GTA--KTHVVVDYEQRMQEALKACQMVMQ 502 (1045)
T ss_dssp SCS--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcC--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 356777887776655544444333
No 11
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1
Probab=21.67 E-value=1e+02 Score=30.26 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 041094 107 KKENPSEEEIKENEEWWKSFRESPVVQFMARAE 139 (523)
Q Consensus 107 ~k~n~t~eE~~en~~~~e~~~~s~~~~f~~r~e 139 (523)
.+|..|+||..|+..|++.+-+..|||.+.+-.
T Consensus 90 ~~E~vT~~E~~E~~~FLd~i~~T~vmk~a~~fL 122 (292)
T 2c1w_A 90 VAEVVTPEEIAENNNFLDAILETKVMKMAHDYL 122 (292)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 477899999999999999999999999877654
No 12
>3jyz_A Type IV pilin structural subunit; PILA, methylation, structural protein; 1.55A {Pseudomonas aeruginosa} PDB: 3jzz_A
Probab=21.25 E-value=31 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCchHHHHHHHhhcCCCCCcc
Q 041094 391 FIPKDLRLQLSKIIPGLRPWE 411 (523)
Q Consensus 391 Yi~y~~R~klAk~ip~LrP~e 411 (523)
|++|..|+||++++..+.|..
T Consensus 2 ~Q~Y~~ra~vse~l~~~~~~K 22 (150)
T 3jyz_A 2 IDPFTVRTRVSEGLVLAEPAK 22 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777754
No 13
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.12 E-value=1.5e+02 Score=22.96 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCC
Q 041094 487 EAKEARREKRMEALIKEKQEKMDAMVKAKNGSNPSD 522 (523)
Q Consensus 487 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (523)
+++.+..+ .|.++.++++++.++-+++-...||+
T Consensus 12 ~Aqe~iLr--~ErELEeAr~~La~iR~~kY~~~~~~ 45 (50)
T 2qdq_A 12 AAQEEMLR--KERELEEARKKLAQIRQQQYKFLPSE 45 (50)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555444 45568888999999999988877764
No 14
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=20.85 E-value=20 Score=29.46 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 041094 434 GSHTTGPPYIREWNVDILEFVRVLDILRTGALNSLLEKVPGFNTIVERLK 483 (523)
Q Consensus 434 gs~tt~p~y~~~wn~dv~~l~~~~~~l~~~~~~~l~~~~pgfd~i~~kv~ 483 (523)
|+|+|.-.++.+|.+...++.+++..|+..-++. +--||+.+|.+-|.
T Consensus 1 ~m~~~~~~l~~~~~~~~~~~~~~l~~l~ee~l~~--~~~~~~~Si~~ll~ 48 (168)
T 3di5_A 1 GMYQTIEGFLQSWTYETESTQKMLDVLTDESLSQ--EIAPGHWTLGRVAW 48 (168)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHCCTTGGGC--BSSTTSCBHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhCCHHHhcC--CCCCCCCCHHHHHH
Confidence 7888999999999999999999999888765432 22356666655443
Done!