BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041097
         (391 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
          Length = 853

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 22  NYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYL-EQLINGG 80
           N+   +F C++WV  S  Y  D+I +        +   ++P    A + KY  E+L N  
Sbjct: 133 NHGTIHFICNSWVYNSKHYKTDRIFF--------ANNTYLPSETPAPLVKYREEELKNVR 184

Query: 81  FVGAGKRSDIGRI 93
             G G+R +  RI
Sbjct: 185 GDGTGERKEWDRI 197


>pdb|4G6V|B Chain B, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
           PSEUDOMALLEI
 pdb|4G6V|D Chain D, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
           PSEUDOMALLEI
 pdb|4G6V|F Chain F, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
           PSEUDOMALLEI
 pdb|4G6V|H Chain H, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
           PSEUDOMALLEI
          Length = 111

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 110 VFEGEFLISPIMDQEVRLRE 129
           +FEG+FLISP+ D +  L+E
Sbjct: 30  LFEGKFLISPVRDADFSLKE 49


>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
          Length = 394

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 60  FIPDNNEATVEKYLEQLINGGFVGA 84
            + + NEA  EKYL +LI+G ++GA
Sbjct: 108 LVRNGNEAQKEKYLPKLISGEYIGA 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,938,049
Number of Sequences: 62578
Number of extensions: 364890
Number of successful extensions: 671
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 8
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)