Query 041097
Match_columns 391
No_of_seqs 180 out of 3334
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.7E-35 1E-39 300.3 18.1 279 54-338 436-826 (889)
2 PLN03210 Resistant to P. syrin 99.9 8.3E-23 1.8E-27 219.9 21.1 268 95-366 487-836 (1153)
3 PLN00113 leucine-rich repeat r 99.6 3.6E-15 7.7E-20 159.9 14.6 204 151-363 140-364 (968)
4 KOG0444 Cytoskeletal regulator 99.6 3.2E-17 6.9E-22 156.2 -3.1 211 151-370 78-376 (1255)
5 PLN00113 leucine-rich repeat r 99.6 1.4E-14 3E-19 155.4 13.4 211 151-366 164-415 (968)
6 KOG0472 Leucine-rich repeat pr 99.4 4.2E-14 9E-19 128.7 3.3 189 175-366 248-539 (565)
7 KOG0444 Cytoskeletal regulator 99.4 4.8E-15 1E-19 141.5 -3.0 190 171-364 70-300 (1255)
8 PLN03210 Resistant to P. syrin 99.4 7.2E-12 1.6E-16 135.7 15.9 228 129-366 611-904 (1153)
9 KOG4194 Membrane glycoprotein 99.3 2.2E-12 4.9E-17 122.7 6.0 37 329-366 390-427 (873)
10 KOG0472 Leucine-rich repeat pr 99.3 8.9E-14 1.9E-18 126.6 -4.8 191 171-371 83-313 (565)
11 KOG0617 Ras suppressor protein 99.2 1.4E-13 3.1E-18 111.6 -5.9 161 177-354 31-195 (264)
12 PF00931 NB-ARC: NB-ARC domain 99.2 2.9E-11 6.3E-16 111.5 8.6 88 1-88 22-110 (287)
13 KOG0618 Serine/threonine phosp 99.2 1.1E-11 2.5E-16 123.6 4.0 89 275-366 376-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.2 3.2E-10 6.9E-15 115.6 12.6 75 283-366 382-456 (788)
15 KOG0617 Ras suppressor protein 99.1 9.8E-13 2.1E-17 106.8 -4.6 151 197-370 28-193 (264)
16 PRK15370 E3 ubiquitin-protein 99.1 3.2E-10 6.9E-15 116.1 9.5 79 282-367 345-427 (754)
17 PRK15370 E3 ubiquitin-protein 99.1 4E-10 8.7E-15 115.3 9.3 171 180-365 200-398 (754)
18 KOG4194 Membrane glycoprotein 99.0 2.5E-10 5.3E-15 109.0 5.4 176 173-366 96-304 (873)
19 KOG0618 Serine/threonine phosp 99.0 9.3E-11 2E-15 117.2 0.9 162 171-343 256-488 (1081)
20 PRK15387 E3 ubiquitin-protein 98.9 2.2E-08 4.7E-13 102.5 12.5 79 180-264 223-311 (788)
21 KOG0532 Leucine-rich repeat (L 98.8 2.5E-10 5.3E-15 108.7 -4.6 172 171-365 90-270 (722)
22 KOG4237 Extracellular matrix p 98.7 7E-10 1.5E-14 101.4 -2.6 203 170-377 82-375 (498)
23 cd00116 LRR_RI Leucine-rich re 98.7 1.8E-08 3.8E-13 94.3 6.7 205 151-366 51-289 (319)
24 cd00116 LRR_RI Leucine-rich re 98.6 7.3E-08 1.6E-12 90.1 6.3 201 151-366 81-318 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.6 5.9E-08 1.3E-12 101.2 5.2 169 178-367 544-729 (889)
26 PF14580 LRR_9: Leucine-rich r 98.5 1.9E-07 4.2E-12 78.5 5.1 42 176-218 16-58 (175)
27 KOG0532 Leucine-rich repeat (L 98.5 6.2E-09 1.3E-13 99.4 -4.5 171 170-368 112-293 (722)
28 KOG1259 Nischarin, modulator o 98.5 9.9E-08 2.2E-12 84.6 3.2 188 151-349 182-416 (490)
29 COG4886 Leucine-rich repeat (L 98.4 3.4E-07 7.3E-12 88.4 4.7 168 173-365 110-287 (394)
30 PF14580 LRR_9: Leucine-rich r 98.3 1E-06 2.2E-11 74.2 4.7 110 253-369 40-154 (175)
31 cd01128 rho_factor Transcripti 98.2 1.5E-06 3.2E-11 77.7 5.3 48 1-49 19-68 (249)
32 PRK09376 rho transcription ter 98.2 7.7E-07 1.7E-11 83.2 3.5 49 1-50 172-222 (416)
33 PRK08118 topology modulation p 98.2 3.1E-07 6.8E-12 77.3 0.5 61 1-62 4-69 (167)
34 KOG4237 Extracellular matrix p 98.1 2.6E-07 5.6E-12 84.9 -3.0 52 183-234 71-131 (498)
35 KOG3207 Beta-tubulin folding c 98.0 8.6E-07 1.9E-11 82.5 -0.8 40 327-367 267-313 (505)
36 KOG3207 Beta-tubulin folding c 98.0 2E-06 4.3E-11 80.2 1.1 40 278-318 267-312 (505)
37 COG4886 Leucine-rich repeat (L 98.0 5E-06 1.1E-10 80.3 3.8 155 151-318 116-288 (394)
38 PLN03150 hypothetical protein; 97.9 2.4E-05 5.2E-10 79.8 7.7 99 245-348 432-532 (623)
39 KOG1259 Nischarin, modulator o 97.9 1.5E-06 3.3E-11 77.3 -1.2 127 178-321 283-413 (490)
40 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 50.9 2.9 41 179-219 1-41 (44)
41 PRK15386 type III secretion pr 97.8 5.4E-05 1.2E-09 71.8 7.7 134 173-341 46-187 (426)
42 PF13855 LRR_8: Leucine rich r 97.8 1.6E-05 3.6E-10 54.6 3.1 36 329-365 23-59 (61)
43 PRK15386 type III secretion pr 97.8 0.00016 3.5E-09 68.6 9.7 158 151-343 52-212 (426)
44 PF13855 LRR_8: Leucine rich r 97.7 5.8E-05 1.3E-09 51.8 4.0 40 179-218 1-41 (61)
45 KOG1909 Ran GTPase-activating 97.6 1.5E-05 3.3E-10 72.4 0.6 88 278-367 209-310 (382)
46 PLN03150 hypothetical protein; 97.6 0.00012 2.6E-09 74.7 6.5 89 277-366 437-526 (623)
47 TIGR00767 rho transcription te 97.6 9.5E-05 2.1E-09 69.8 4.9 49 1-50 171-221 (415)
48 PRK07261 topology modulation p 97.5 0.0001 2.2E-09 62.3 4.2 35 1-35 3-38 (171)
49 KOG2120 SCF ubiquitin ligase, 97.3 3E-05 6.4E-10 69.2 -1.6 164 171-368 202-376 (419)
50 COG1618 Predicted nucleotide k 97.3 0.00016 3.5E-09 58.8 2.4 33 1-35 8-41 (179)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.1E-09 73.5 3.0 110 248-365 140-260 (699)
52 PF12799 LRR_4: Leucine Rich r 97.2 0.0004 8.6E-09 44.1 3.4 35 331-366 1-35 (44)
53 PF13207 AAA_17: AAA domain; P 97.1 0.00022 4.7E-09 56.4 1.9 20 1-20 2-21 (121)
54 KOG1909 Ran GTPase-activating 97.1 0.00016 3.5E-09 65.8 1.2 95 246-342 204-309 (382)
55 PF13401 AAA_22: AAA domain; P 97.1 0.0018 3.8E-08 51.9 6.7 82 1-86 7-94 (131)
56 PRK11331 5-methylcytosine-spec 97.0 0.00067 1.5E-08 65.2 4.0 47 1-47 197-243 (459)
57 KOG0531 Protein phosphatase 1, 97.0 0.00023 5.1E-09 69.1 0.8 43 175-217 91-133 (414)
58 KOG3665 ZYG-1-like serine/thre 97.0 0.00065 1.4E-08 69.6 4.0 15 250-264 215-229 (699)
59 PF13238 AAA_18: AAA domain; P 96.8 0.00059 1.3E-08 54.4 1.9 20 1-20 1-20 (129)
60 TIGR03015 pepcterm_ATPase puta 96.8 0.0036 7.9E-08 56.9 7.3 50 1-53 46-95 (269)
61 PF05496 RuvB_N: Holliday junc 96.7 0.00092 2E-08 58.1 2.4 26 3-30 55-80 (233)
62 KOG4579 Leucine-rich repeat (L 96.6 0.00013 2.8E-09 57.8 -3.1 100 179-299 27-139 (177)
63 PF00485 PRK: Phosphoribulokin 96.6 0.0012 2.6E-08 57.1 1.9 20 1-20 2-21 (194)
64 KOG1859 Leucine-rich repeat pr 96.5 8.3E-05 1.8E-09 73.8 -5.9 125 180-342 165-290 (1096)
65 PTZ00301 uridine kinase; Provi 96.5 0.0015 3.4E-08 56.9 2.2 20 1-20 6-25 (210)
66 COG2256 MGS1 ATPase related to 96.4 0.0021 4.5E-08 60.1 2.9 31 3-35 53-83 (436)
67 KOG1859 Leucine-rich repeat pr 96.4 0.00019 4.1E-09 71.4 -4.5 115 246-372 178-296 (1096)
68 cd00009 AAA The AAA+ (ATPases 96.4 0.0034 7.4E-08 50.7 3.5 21 1-21 22-42 (151)
69 TIGR00235 udk uridine kinase. 96.4 0.0019 4.1E-08 56.4 2.1 20 1-20 9-28 (207)
70 PRK08233 hypothetical protein; 96.4 0.0019 4.2E-08 54.9 2.1 20 1-20 6-25 (182)
71 PRK05480 uridine/cytidine kina 96.3 0.002 4.3E-08 56.4 2.1 20 1-20 9-28 (209)
72 cd02019 NK Nucleoside/nucleoti 96.3 0.0024 5.1E-08 45.0 2.1 20 1-20 2-21 (69)
73 KOG2120 SCF ubiquitin ligase, 96.3 0.00018 3.9E-09 64.3 -4.9 117 246-366 225-349 (419)
74 COG3640 CooC CO dehydrogenase 96.3 0.019 4.2E-07 49.9 7.5 110 1-112 3-132 (255)
75 KOG2028 ATPase related to the 96.2 0.0051 1.1E-07 56.8 4.1 25 2-26 166-190 (554)
76 PRK06762 hypothetical protein; 96.2 0.0023 4.9E-08 53.7 1.8 20 1-20 5-24 (166)
77 PRK03839 putative kinase; Prov 96.2 0.0022 4.8E-08 54.6 1.8 20 1-20 3-22 (180)
78 PRK05541 adenylylsulfate kinas 96.2 0.003 6.6E-08 53.5 2.2 32 1-34 10-41 (176)
79 PRK00411 cdc6 cell division co 96.1 0.035 7.6E-07 53.6 9.8 76 2-79 59-136 (394)
80 KOG2982 Uncharacterized conser 96.1 0.0033 7.1E-08 56.5 2.3 154 179-366 45-210 (418)
81 PRK06696 uridine kinase; Valid 96.1 0.0053 1.2E-07 54.3 3.6 20 1-20 25-44 (223)
82 PRK04040 adenylate kinase; Pro 96.1 0.003 6.6E-08 54.1 1.9 20 1-20 5-24 (188)
83 smart00382 AAA ATPases associa 96.1 0.025 5.5E-07 45.0 7.4 21 1-21 5-25 (148)
84 cd02023 UMPK Uridine monophosp 96.0 0.0036 7.9E-08 54.2 2.1 20 1-20 2-21 (198)
85 PRK00625 shikimate kinase; Pro 96.0 0.0035 7.6E-08 53.0 1.9 20 1-20 3-22 (173)
86 PRK06217 hypothetical protein; 96.0 0.0039 8.5E-08 53.3 2.0 21 1-21 4-24 (183)
87 cd02024 NRK1 Nicotinamide ribo 96.0 0.0038 8.2E-08 53.4 1.9 20 1-20 2-21 (187)
88 COG1428 Deoxynucleoside kinase 96.0 0.0035 7.6E-08 53.7 1.6 20 1-20 7-26 (216)
89 PRK06547 hypothetical protein; 96.0 0.0041 8.9E-08 52.5 2.0 20 1-20 18-37 (172)
90 KOG2982 Uncharacterized conser 96.0 0.011 2.3E-07 53.3 4.6 83 283-365 199-289 (418)
91 cd02028 UMPK_like Uridine mono 96.0 0.0043 9.3E-08 52.8 2.2 20 1-20 2-21 (179)
92 COG0572 Udk Uridine kinase [Nu 95.9 0.0053 1.2E-07 53.1 2.7 25 1-27 11-35 (218)
93 cd02025 PanK Pantothenate kina 95.9 0.0038 8.2E-08 55.0 1.8 20 1-20 2-21 (220)
94 PF05729 NACHT: NACHT domain 95.9 0.0048 1.1E-07 51.3 2.4 37 1-37 3-43 (166)
95 PRK07667 uridine kinase; Provi 95.9 0.0044 9.6E-08 53.4 2.1 20 1-20 20-39 (193)
96 TIGR02928 orc1/cdc6 family rep 95.9 0.04 8.8E-07 52.5 8.8 49 2-53 44-99 (365)
97 PF13671 AAA_33: AAA domain; P 95.9 0.0045 9.8E-08 50.3 1.9 20 1-20 2-21 (143)
98 KOG1644 U2-associated snRNP A' 95.9 0.018 3.8E-07 49.0 5.3 35 280-315 111-148 (233)
99 COG1100 GTPase SAR1 and relate 95.8 0.0056 1.2E-07 53.7 2.5 21 1-21 8-28 (219)
100 PF00004 AAA: ATPase family as 95.8 0.0045 9.8E-08 49.4 1.7 21 1-21 1-21 (132)
101 PF08477 Miro: Miro-like prote 95.8 0.0053 1.1E-07 48.1 2.0 22 1-22 2-23 (119)
102 cd04139 RalA_RalB RalA/RalB su 95.8 0.0062 1.4E-07 50.5 2.5 22 1-22 3-24 (164)
103 PF04665 Pox_A32: Poxvirus A32 95.8 0.0083 1.8E-07 53.1 3.3 35 1-37 16-50 (241)
104 PRK13949 shikimate kinase; Pro 95.8 0.0053 1.2E-07 51.7 1.9 20 1-20 4-23 (169)
105 PRK13947 shikimate kinase; Pro 95.8 0.0052 1.1E-07 51.8 1.8 20 1-20 4-23 (171)
106 PHA00729 NTP-binding motif con 95.7 0.006 1.3E-07 53.4 2.1 20 1-20 20-39 (226)
107 TIGR01313 therm_gnt_kin carboh 95.7 0.0072 1.6E-07 50.5 2.5 20 1-20 1-20 (163)
108 KOG3864 Uncharacterized conser 95.7 0.0015 3.4E-08 55.2 -1.6 85 283-367 101-188 (221)
109 KOG0531 Protein phosphatase 1, 95.7 0.0027 5.9E-08 61.7 -0.2 127 177-342 70-197 (414)
110 PF03029 ATP_bind_1: Conserved 95.7 0.0072 1.6E-07 53.9 2.5 30 3-34 1-30 (238)
111 PRK00131 aroK shikimate kinase 95.7 0.0059 1.3E-07 51.5 1.8 20 1-20 7-26 (175)
112 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.006 1.3E-07 53.9 1.9 35 1-37 41-75 (226)
113 cd00464 SK Shikimate kinase (S 95.6 0.0067 1.4E-07 50.0 2.1 20 1-20 2-21 (154)
114 PF03266 NTPase_1: NTPase; In 95.6 0.0079 1.7E-07 50.5 2.5 33 1-35 2-35 (168)
115 COG1936 Predicted nucleotide k 95.6 0.007 1.5E-07 50.1 2.0 19 1-19 3-21 (180)
116 PF07728 AAA_5: AAA domain (dy 95.6 0.017 3.7E-07 46.7 4.4 40 2-47 3-43 (139)
117 TIGR02322 phosphon_PhnN phosph 95.5 0.0077 1.7E-07 51.2 2.1 21 1-21 4-24 (179)
118 cd00071 GMPK Guanosine monopho 95.5 0.01 2.2E-07 48.1 2.5 20 1-20 2-21 (137)
119 COG0237 CoaE Dephospho-CoA kin 95.5 0.008 1.7E-07 51.9 1.9 19 1-19 5-23 (201)
120 PF00910 RNA_helicase: RNA hel 95.4 0.011 2.4E-07 45.6 2.5 20 1-20 1-20 (107)
121 cd02021 GntK Gluconate kinase 95.4 0.009 2E-07 49.1 2.1 20 1-20 2-21 (150)
122 PRK13946 shikimate kinase; Pro 95.4 0.0088 1.9E-07 51.2 2.0 20 1-20 13-32 (184)
123 TIGR01360 aden_kin_iso1 adenyl 95.4 0.0087 1.9E-07 51.2 2.0 20 1-20 6-25 (188)
124 PRK00889 adenylylsulfate kinas 95.4 0.0092 2E-07 50.5 2.1 20 1-20 7-26 (175)
125 cd02020 CMPK Cytidine monophos 95.4 0.0097 2.1E-07 48.5 2.1 20 1-20 2-21 (147)
126 PF01926 MMR_HSR1: 50S ribosom 95.4 0.0098 2.1E-07 46.5 2.0 21 1-21 2-22 (116)
127 TIGR00554 panK_bact pantothena 95.4 0.009 1.9E-07 54.7 2.0 20 1-20 65-84 (290)
128 PRK06893 DNA replication initi 95.3 0.0093 2E-07 53.0 2.0 34 2-37 43-76 (229)
129 KOG1532 GTPase XAB1, interacts 95.3 0.0075 1.6E-07 53.5 1.3 21 1-21 22-42 (366)
130 TIGR03263 guanyl_kin guanylate 95.3 0.01 2.2E-07 50.4 2.2 20 1-20 4-23 (180)
131 cd02022 DPCK Dephospho-coenzym 95.3 0.01 2.2E-07 50.5 2.1 20 1-20 2-21 (179)
132 PF07726 AAA_3: ATPase family 95.3 0.0085 1.8E-07 47.3 1.4 26 2-29 3-28 (131)
133 PRK03846 adenylylsulfate kinas 95.3 0.01 2.2E-07 51.4 2.1 20 1-20 27-46 (198)
134 PRK13695 putative NTPase; Prov 95.3 0.012 2.5E-07 49.9 2.3 33 1-35 3-36 (174)
135 PRK09270 nucleoside triphospha 95.3 0.017 3.6E-07 51.3 3.4 20 1-20 36-55 (229)
136 PF13173 AAA_14: AAA domain 95.2 0.0094 2E-07 47.6 1.5 21 1-21 5-25 (128)
137 PF03205 MobB: Molybdopterin g 95.2 0.015 3.3E-07 47.2 2.8 36 1-38 3-39 (140)
138 PRK05057 aroK shikimate kinase 95.2 0.011 2.4E-07 50.0 2.0 20 1-20 7-26 (172)
139 PRK14530 adenylate kinase; Pro 95.2 0.011 2.3E-07 52.0 2.0 20 1-20 6-25 (215)
140 PF00560 LRR_1: Leucine Rich R 95.2 0.0093 2E-07 31.5 1.0 22 332-354 1-22 (22)
141 PRK10078 ribose 1,5-bisphospho 95.2 0.012 2.6E-07 50.4 2.1 21 1-21 5-25 (186)
142 TIGR00176 mobB molybdopterin-g 95.2 0.016 3.4E-07 48.0 2.8 20 1-20 2-21 (155)
143 cd01120 RecA-like_NTPases RecA 95.1 0.018 3.8E-07 47.6 3.1 37 1-39 2-38 (165)
144 PRK00300 gmk guanylate kinase; 95.1 0.011 2.5E-07 51.3 2.0 20 1-20 8-27 (205)
145 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.012 2.7E-07 50.1 2.1 20 1-20 2-21 (183)
146 TIGR01287 nifH nitrogenase iro 95.1 0.012 2.6E-07 53.8 2.2 20 1-20 3-22 (275)
147 PRK13975 thymidylate kinase; P 95.1 0.011 2.4E-07 51.0 1.8 20 1-20 5-24 (196)
148 TIGR02237 recomb_radB DNA repa 95.1 0.028 6.1E-07 49.0 4.4 43 2-47 16-58 (209)
149 COG0003 ArsA Predicted ATPase 95.1 0.034 7.3E-07 51.7 4.9 74 2-77 6-82 (322)
150 PRK06620 hypothetical protein; 95.1 0.014 3E-07 51.2 2.3 20 2-21 48-67 (214)
151 cd01876 YihA_EngB The YihA (En 95.1 0.015 3.2E-07 48.2 2.4 20 1-20 2-21 (170)
152 cd01862 Rab7 Rab7 subfamily. 95.0 0.014 3.1E-07 48.7 2.3 21 1-21 3-23 (172)
153 PRK13948 shikimate kinase; Pro 95.0 0.013 2.8E-07 49.9 1.9 20 1-20 13-32 (182)
154 cd04119 RJL RJL (RabJ-Like) su 95.0 0.017 3.7E-07 48.0 2.6 22 1-22 3-24 (168)
155 PRK06761 hypothetical protein; 95.0 0.029 6.2E-07 51.1 4.2 21 1-21 6-26 (282)
156 PF00005 ABC_tran: ABC transpo 95.0 0.014 3E-07 47.1 2.0 20 1-20 14-33 (137)
157 cd01133 F1-ATPase_beta F1 ATP 95.0 0.03 6.5E-07 50.6 4.2 39 1-41 72-111 (274)
158 PRK12377 putative replication 95.0 0.013 2.8E-07 52.5 1.8 35 1-37 104-138 (248)
159 cd04155 Arl3 Arl3 subfamily. 95.0 0.015 3.2E-07 48.9 2.1 21 1-21 17-37 (173)
160 PRK10751 molybdopterin-guanine 95.0 0.015 3.2E-07 48.9 2.0 20 1-20 9-28 (173)
161 KOG2123 Uncharacterized conser 94.9 0.003 6.4E-08 56.2 -2.2 94 279-375 38-138 (388)
162 smart00173 RAS Ras subfamily o 94.9 0.018 3.9E-07 47.8 2.5 21 1-21 3-23 (164)
163 TIGR00231 small_GTP small GTP- 94.9 0.017 3.8E-07 47.0 2.4 22 1-22 4-25 (161)
164 PRK05439 pantothenate kinase; 94.9 0.014 3.1E-07 53.8 2.0 20 1-20 89-108 (311)
165 PRK08084 DNA replication initi 94.9 0.016 3.4E-07 51.7 2.2 34 2-37 49-82 (235)
166 cd00878 Arf_Arl Arf (ADP-ribos 94.9 0.017 3.7E-07 47.6 2.3 22 1-22 2-23 (158)
167 KOG2739 Leucine-rich acidic nu 94.9 0.011 2.5E-07 52.1 1.2 85 279-365 62-153 (260)
168 COG1124 DppF ABC-type dipeptid 94.9 0.026 5.6E-07 49.5 3.4 20 1-20 36-55 (252)
169 cd03114 ArgK-like The function 94.9 0.017 3.7E-07 47.5 2.1 20 1-20 2-21 (148)
170 KOG3347 Predicted nucleotide k 94.9 0.066 1.4E-06 43.2 5.3 20 1-20 10-29 (176)
171 KOG3308 Uncharacterized protei 94.9 0.016 3.5E-07 49.0 2.0 38 1-44 7-44 (225)
172 cd04159 Arl10_like Arl10-like 94.8 0.021 4.6E-07 46.7 2.6 21 1-21 2-22 (159)
173 cd00154 Rab Rab family. Rab G 94.8 0.018 4E-07 47.0 2.2 21 1-21 3-23 (159)
174 PRK03731 aroL shikimate kinase 94.8 0.017 3.6E-07 48.7 2.0 20 1-20 5-24 (171)
175 cd01123 Rad51_DMC1_radA Rad51_ 94.8 0.039 8.4E-07 49.1 4.5 54 1-55 22-79 (235)
176 cd00876 Ras Ras family. The R 94.8 0.02 4.2E-07 47.2 2.4 21 1-21 2-22 (160)
177 smart00175 RAB Rab subfamily o 94.8 0.02 4.3E-07 47.5 2.3 21 1-21 3-23 (164)
178 cd00227 CPT Chloramphenicol (C 94.8 0.018 3.8E-07 48.8 2.0 20 1-20 5-24 (175)
179 PRK13768 GTPase; Provisional 94.8 0.017 3.6E-07 52.1 2.0 20 1-20 5-24 (253)
180 PLN02796 D-glycerate 3-kinase 94.7 0.017 3.8E-07 53.8 2.1 20 1-20 103-122 (347)
181 TIGR01242 26Sp45 26S proteasom 94.7 0.018 3.8E-07 55.0 2.2 25 2-28 160-184 (364)
182 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.02 4.2E-07 42.7 2.0 20 1-20 2-21 (99)
183 PF13521 AAA_28: AAA domain; P 94.7 0.016 3.5E-07 48.4 1.7 20 1-20 2-21 (163)
184 cd00820 PEPCK_HprK Phosphoenol 94.7 0.019 4.1E-07 44.0 1.9 19 1-19 18-36 (107)
185 cd01672 TMPK Thymidine monopho 94.7 0.043 9.4E-07 47.1 4.4 20 1-20 3-22 (200)
186 COG0563 Adk Adenylate kinase a 94.7 0.019 4.1E-07 48.7 2.0 21 1-21 3-23 (178)
187 PRK09087 hypothetical protein; 94.7 0.019 4.1E-07 50.8 2.1 21 1-21 47-67 (226)
188 PF01583 APS_kinase: Adenylyls 94.7 0.024 5.1E-07 46.8 2.5 95 2-117 6-103 (156)
189 cd00879 Sar1 Sar1 subfamily. 94.7 0.021 4.6E-07 48.8 2.3 21 1-21 22-42 (190)
190 cd02034 CooC The accessory pro 94.7 0.018 4E-07 45.1 1.8 20 1-20 2-21 (116)
191 TIGR03574 selen_PSTK L-seryl-t 94.7 0.019 4.2E-07 51.6 2.1 20 1-20 2-21 (249)
192 cd04113 Rab4 Rab4 subfamily. 94.6 0.025 5.3E-07 46.9 2.6 21 1-21 3-23 (161)
193 cd04138 H_N_K_Ras_like H-Ras/N 94.6 0.024 5.1E-07 46.8 2.5 21 1-21 4-24 (162)
194 COG2019 AdkA Archaeal adenylat 94.6 0.02 4.2E-07 47.2 1.9 20 1-20 7-26 (189)
195 TIGR00101 ureG urease accessor 94.6 0.044 9.6E-07 47.4 4.2 20 1-20 4-23 (199)
196 PRK08356 hypothetical protein; 94.6 0.02 4.3E-07 49.5 2.1 18 1-18 8-25 (195)
197 PRK04182 cytidylate kinase; Pr 94.6 0.02 4.3E-07 48.5 2.0 20 1-20 3-22 (180)
198 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.2E-07 30.2 1.2 19 181-199 2-20 (22)
199 cd04177 RSR1 RSR1 subgroup. R 94.6 0.025 5.4E-07 47.3 2.5 21 1-21 4-24 (168)
200 cd02027 APSK Adenosine 5'-phos 94.5 0.023 4.9E-07 46.8 2.1 20 1-20 2-21 (149)
201 PRK01184 hypothetical protein; 94.5 0.021 4.6E-07 48.7 2.0 17 1-17 4-20 (184)
202 TIGR02881 spore_V_K stage V sp 94.5 0.018 4E-07 52.2 1.7 19 2-20 46-64 (261)
203 COG0194 Gmk Guanylate kinase [ 94.5 0.03 6.5E-07 47.1 2.8 22 1-22 7-28 (191)
204 cd01428 ADK Adenylate kinase ( 94.5 0.022 4.8E-07 48.9 2.1 20 1-20 2-21 (194)
205 PRK08727 hypothetical protein; 94.5 0.024 5.1E-07 50.5 2.3 35 1-37 44-78 (233)
206 TIGR02173 cyt_kin_arch cytidyl 94.5 0.022 4.8E-07 47.8 2.1 20 1-20 3-22 (171)
207 COG1102 Cmk Cytidylate kinase 94.5 0.017 3.7E-07 47.2 1.2 40 1-53 3-42 (179)
208 cd01864 Rab19 Rab19 subfamily. 94.4 0.029 6.3E-07 46.7 2.6 20 1-20 6-25 (165)
209 PRK13230 nitrogenase reductase 94.4 0.022 4.8E-07 52.2 2.0 20 1-20 4-23 (279)
210 TIGR00635 ruvB Holliday juncti 94.4 0.021 4.6E-07 53.0 1.9 19 2-20 34-52 (305)
211 cd01898 Obg Obg subfamily. Th 94.4 0.026 5.7E-07 47.1 2.3 20 1-20 3-22 (170)
212 PRK00080 ruvB Holliday junctio 94.4 0.036 7.7E-07 52.1 3.4 20 2-21 55-74 (328)
213 PF13191 AAA_16: AAA ATPase do 94.4 0.022 4.7E-07 48.4 1.8 20 2-21 28-47 (185)
214 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.024 5.2E-07 49.8 2.1 20 1-20 33-52 (218)
215 COG2255 RuvB Holliday junction 94.4 0.025 5.3E-07 50.7 2.0 25 2-28 56-80 (332)
216 PF10662 PduV-EutP: Ethanolami 94.4 0.029 6.2E-07 45.4 2.3 21 1-21 4-24 (143)
217 COG1116 TauB ABC-type nitrate/ 94.3 0.025 5.4E-07 49.9 2.0 20 1-20 32-51 (248)
218 cd04162 Arl9_Arfrp2_like Arl9/ 94.3 0.033 7.1E-07 46.5 2.7 21 1-21 2-22 (164)
219 PTZ00088 adenylate kinase 1; P 94.3 0.022 4.7E-07 50.4 1.6 20 1-20 9-28 (229)
220 PRK12339 2-phosphoglycerate ki 94.3 0.024 5.3E-07 48.9 1.9 20 1-20 6-25 (197)
221 PRK13342 recombination factor 94.3 0.027 5.9E-07 54.7 2.4 20 2-21 40-59 (413)
222 PRK09825 idnK D-gluconate kina 94.3 0.027 5.9E-07 47.7 2.1 20 1-20 6-25 (176)
223 PF00071 Ras: Ras family; Int 94.3 0.029 6.2E-07 46.5 2.2 21 1-21 2-22 (162)
224 cd01860 Rab5_related Rab5-rela 94.3 0.03 6.5E-07 46.4 2.3 22 1-22 4-25 (163)
225 TIGR02528 EutP ethanolamine ut 94.2 0.03 6.5E-07 45.3 2.2 21 1-21 3-23 (142)
226 PRK08903 DnaA regulatory inact 94.2 0.024 5.2E-07 50.2 1.8 21 1-21 45-65 (227)
227 PRK07952 DNA replication prote 94.2 0.055 1.2E-06 48.3 4.1 33 2-36 103-135 (244)
228 cd04136 Rap_like Rap-like subf 94.2 0.034 7.4E-07 46.0 2.6 21 1-21 4-24 (163)
229 PRK09361 radB DNA repair and r 94.2 0.063 1.4E-06 47.4 4.3 42 2-46 27-68 (225)
230 cd04101 RabL4 RabL4 (Rab-like4 94.2 0.032 6.9E-07 46.3 2.3 20 1-20 3-22 (164)
231 cd03225 ABC_cobalt_CbiO_domain 94.2 0.029 6.2E-07 49.0 2.1 20 1-20 30-49 (211)
232 TIGR00960 3a0501s02 Type II (G 94.1 0.029 6.3E-07 49.2 2.1 20 1-20 32-51 (216)
233 PHA02575 1 deoxynucleoside mon 94.1 0.029 6.2E-07 48.9 2.0 20 1-20 3-22 (227)
234 cd02026 PRK Phosphoribulokinas 94.1 0.03 6.5E-07 51.0 2.2 20 1-20 2-21 (273)
235 cd04123 Rab21 Rab21 subfamily. 94.1 0.033 7.1E-07 45.9 2.3 21 1-21 3-23 (162)
236 cd04124 RabL2 RabL2 subfamily. 94.1 0.032 7E-07 46.3 2.2 21 1-21 3-23 (161)
237 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.1 0.033 7.2E-07 46.3 2.3 21 1-21 5-25 (166)
238 PRK13232 nifH nitrogenase redu 94.1 0.028 6.2E-07 51.3 2.0 20 1-20 4-23 (273)
239 cd03229 ABC_Class3 This class 94.1 0.031 6.7E-07 47.5 2.1 20 1-20 29-48 (178)
240 cd02117 NifH_like This family 94.1 0.03 6.4E-07 49.1 2.0 20 1-20 3-22 (212)
241 PRK08099 bifunctional DNA-bind 94.1 0.026 5.7E-07 54.3 1.8 20 1-20 222-241 (399)
242 TIGR00150 HI0065_YjeE ATPase, 94.1 0.033 7.1E-07 44.6 2.1 21 1-21 25-45 (133)
243 TIGR01281 DPOR_bchL light-inde 94.1 0.029 6.2E-07 51.1 2.0 19 1-19 3-21 (268)
244 cd01878 HflX HflX subfamily. 94.1 0.032 7E-07 48.4 2.2 22 1-22 44-65 (204)
245 cd04160 Arfrp1 Arfrp1 subfamil 94.1 0.031 6.6E-07 46.6 2.0 20 1-20 2-21 (167)
246 cd00880 Era_like Era (E. coli 94.0 0.029 6.3E-07 45.6 1.8 19 3-21 1-19 (163)
247 PLN02348 phosphoribulokinase 94.0 0.027 5.9E-07 53.3 1.8 20 1-20 52-71 (395)
248 PLN00020 ribulose bisphosphate 94.0 0.037 8.1E-07 51.9 2.6 21 1-21 151-171 (413)
249 cd04140 ARHI_like ARHI subfami 94.0 0.039 8.4E-07 46.0 2.6 21 1-21 4-24 (165)
250 cd04150 Arf1_5_like Arf1-Arf5- 94.0 0.032 6.9E-07 46.3 2.0 20 1-20 3-22 (159)
251 TIGR01166 cbiO cobalt transpor 94.0 0.032 7E-07 47.9 2.1 20 1-20 21-40 (190)
252 cd03238 ABC_UvrA The excision 94.0 0.033 7.1E-07 47.2 2.1 20 1-20 24-43 (176)
253 PRK10536 hypothetical protein; 94.0 0.12 2.6E-06 46.2 5.6 21 1-21 77-97 (262)
254 PRK11889 flhF flagellar biosyn 94.0 0.031 6.8E-07 53.0 2.0 20 1-20 244-263 (436)
255 COG5238 RNA1 Ran GTPase-activa 94.0 0.02 4.4E-07 50.9 0.8 45 171-215 84-133 (388)
256 PRK14730 coaE dephospho-CoA ki 94.0 0.033 7.1E-07 48.1 2.0 20 1-20 4-23 (195)
257 cd04161 Arl2l1_Arl13_like Arl2 94.0 0.037 7.9E-07 46.4 2.3 21 1-21 2-22 (167)
258 PRK14527 adenylate kinase; Pro 94.0 0.032 7E-07 47.9 2.0 20 1-20 9-28 (191)
259 PRK02496 adk adenylate kinase; 94.0 0.033 7.1E-07 47.5 2.0 20 1-20 4-23 (184)
260 cd03115 SRP The signal recogni 94.0 0.034 7.4E-07 46.9 2.1 20 1-20 3-22 (173)
261 cd00157 Rho Rho (Ras homology) 93.9 0.036 7.8E-07 46.3 2.2 21 1-21 3-23 (171)
262 COG1120 FepC ABC-type cobalami 93.9 0.033 7.2E-07 49.8 2.1 20 1-20 31-50 (258)
263 cd03293 ABC_NrtD_SsuB_transpor 93.9 0.034 7.3E-07 49.0 2.1 20 1-20 33-52 (220)
264 PRK14490 putative bifunctional 93.9 0.046 9.9E-07 52.3 3.1 25 1-27 8-32 (369)
265 PRK13541 cytochrome c biogenes 93.9 0.034 7.4E-07 47.9 2.1 21 1-21 29-49 (195)
266 cd04146 RERG_RasL11_like RERG/ 93.9 0.042 9.1E-07 45.7 2.6 20 1-20 2-21 (165)
267 COG0529 CysC Adenylylsulfate k 93.9 0.15 3.2E-06 42.6 5.6 99 3-123 28-129 (197)
268 cd03261 ABC_Org_Solvent_Resist 93.9 0.034 7.3E-07 49.5 2.1 20 1-20 29-48 (235)
269 TIGR02673 FtsE cell division A 93.9 0.034 7.4E-07 48.7 2.1 20 1-20 31-50 (214)
270 cd04103 Centaurin_gamma Centau 93.9 0.042 9.1E-07 45.6 2.5 20 1-20 3-22 (158)
271 cd04163 Era Era subfamily. Er 93.9 0.039 8.4E-07 45.5 2.3 21 1-21 6-26 (168)
272 cd01673 dNK Deoxyribonucleosid 93.9 0.032 7E-07 48.0 1.9 20 1-20 2-21 (193)
273 cd04175 Rap1 Rap1 subgroup. T 93.9 0.042 9.1E-07 45.6 2.5 21 1-21 4-24 (164)
274 PRK14738 gmk guanylate kinase; 93.9 0.035 7.6E-07 48.4 2.1 20 1-20 16-35 (206)
275 PRK15453 phosphoribulokinase; 93.9 0.035 7.5E-07 50.3 2.1 20 1-20 8-27 (290)
276 cd03259 ABC_Carb_Solutes_like 93.9 0.035 7.7E-07 48.6 2.1 20 1-20 29-48 (213)
277 cd03263 ABC_subfamily_A The AB 93.9 0.035 7.7E-07 48.8 2.1 20 1-20 31-50 (220)
278 PLN02200 adenylate kinase fami 93.8 0.035 7.6E-07 49.4 2.0 20 1-20 46-65 (234)
279 PRK00454 engB GTP-binding prot 93.8 0.037 7.9E-07 47.5 2.1 21 1-21 27-47 (196)
280 cd01131 PilT Pilus retraction 93.8 0.052 1.1E-06 46.9 3.1 20 1-20 4-23 (198)
281 PRK14532 adenylate kinase; Pro 93.8 0.036 7.7E-07 47.5 2.0 20 1-20 3-22 (188)
282 cd03222 ABC_RNaseL_inhibitor T 93.8 0.036 7.8E-07 47.0 2.0 20 1-20 28-47 (177)
283 COG1419 FlhF Flagellar GTP-bin 93.8 0.034 7.5E-07 52.6 2.0 42 1-44 206-248 (407)
284 COG0703 AroK Shikimate kinase 93.8 0.035 7.5E-07 46.3 1.8 20 1-20 5-24 (172)
285 cd03269 ABC_putative_ATPase Th 93.8 0.037 7.9E-07 48.3 2.1 20 1-20 29-48 (210)
286 PF00625 Guanylate_kin: Guanyl 93.8 0.058 1.3E-06 46.0 3.3 33 1-35 5-37 (183)
287 PRK13341 recombination factor 93.8 0.035 7.6E-07 57.5 2.2 25 2-28 56-80 (725)
288 CHL00072 chlL photochlorophyll 93.8 0.035 7.5E-07 51.2 2.0 20 1-20 3-22 (290)
289 cd03264 ABC_drug_resistance_li 93.8 0.037 8E-07 48.4 2.1 20 1-20 28-47 (211)
290 cd03226 ABC_cobalt_CbiO_domain 93.8 0.037 8.1E-07 48.1 2.1 20 1-20 29-48 (205)
291 TIGR03499 FlhF flagellar biosy 93.8 0.035 7.7E-07 50.9 2.0 20 1-20 197-216 (282)
292 cd04137 RheB Rheb (Ras Homolog 93.8 0.038 8.2E-07 46.8 2.1 21 1-21 4-24 (180)
293 KOG1644 U2-associated snRNP A' 93.8 0.088 1.9E-06 44.9 4.1 83 283-366 64-151 (233)
294 cd01393 recA_like RecA is a b 93.8 0.083 1.8E-06 46.6 4.3 44 2-47 23-72 (226)
295 cd03292 ABC_FtsE_transporter F 93.8 0.038 8.2E-07 48.4 2.1 20 1-20 30-49 (214)
296 TIGR00041 DTMP_kinase thymidyl 93.8 0.084 1.8E-06 45.4 4.3 20 1-20 6-25 (195)
297 cd03260 ABC_PstB_phosphate_tra 93.8 0.038 8.2E-07 48.9 2.1 20 1-20 29-48 (227)
298 PRK05416 glmZ(sRNA)-inactivati 93.8 0.037 7.9E-07 50.7 2.0 19 1-19 9-27 (288)
299 PTZ00202 tuzin; Provisional 93.7 0.27 5.8E-06 47.4 7.7 46 1-54 289-334 (550)
300 PRK14493 putative bifunctional 93.7 0.037 8.1E-07 50.3 2.1 31 1-34 4-34 (274)
301 cd03235 ABC_Metallic_Cations A 93.7 0.038 8.1E-07 48.4 2.0 20 1-20 28-47 (213)
302 cd04120 Rab12 Rab12 subfamily. 93.7 0.047 1E-06 47.4 2.6 21 1-21 3-23 (202)
303 TIGR02315 ABC_phnC phosphonate 93.7 0.038 8.2E-07 49.4 2.1 20 1-20 31-50 (243)
304 cd03256 ABC_PhnC_transporter A 93.7 0.038 8.2E-07 49.3 2.1 20 1-20 30-49 (241)
305 PRK08181 transposase; Validate 93.7 0.056 1.2E-06 49.1 3.1 33 1-35 109-141 (269)
306 TIGR00455 apsK adenylylsulfate 93.7 0.039 8.5E-07 47.1 2.1 20 1-20 21-40 (184)
307 PRK03992 proteasome-activating 93.7 0.046 9.9E-07 52.6 2.7 19 2-20 169-187 (389)
308 cd02040 NifH NifH gene encodes 93.7 0.036 7.8E-07 50.4 1.9 20 1-20 4-23 (270)
309 cd00877 Ran Ran (Ras-related n 93.7 0.043 9.2E-07 45.9 2.2 20 1-20 3-22 (166)
310 PLN03046 D-glycerate 3-kinase; 93.7 0.038 8.2E-07 52.7 2.0 20 1-20 215-234 (460)
311 cd01888 eIF2_gamma eIF2-gamma 93.7 0.039 8.5E-07 47.9 2.0 18 1-18 3-20 (203)
312 cd04107 Rab32_Rab38 Rab38/Rab3 93.7 0.05 1.1E-06 47.1 2.7 21 1-21 3-23 (201)
313 cd04115 Rab33B_Rab33A Rab33B/R 93.7 0.05 1.1E-06 45.6 2.6 21 1-21 5-25 (170)
314 PRK10584 putative ABC transpor 93.7 0.04 8.6E-07 48.8 2.1 20 1-20 39-58 (228)
315 PRK09183 transposase/IS protei 93.7 0.035 7.6E-07 50.2 1.7 20 1-20 105-124 (259)
316 TIGR03608 L_ocin_972_ABC putat 93.7 0.041 8.8E-07 47.8 2.1 20 1-20 27-46 (206)
317 cd02029 PRK_like Phosphoribulo 93.6 0.042 9.1E-07 49.3 2.1 20 1-20 2-21 (277)
318 TIGR01351 adk adenylate kinase 93.6 0.042 9E-07 48.0 2.1 20 1-20 2-21 (210)
319 cd03297 ABC_ModC_molybdenum_tr 93.6 0.041 9E-07 48.2 2.1 20 1-20 26-45 (214)
320 PRK04301 radA DNA repair and r 93.6 0.098 2.1E-06 48.9 4.7 52 3-55 107-162 (317)
321 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.041 9E-07 49.0 2.1 20 1-20 30-49 (236)
322 PRK14531 adenylate kinase; Pro 93.6 0.042 9.1E-07 46.9 2.0 20 1-20 5-24 (183)
323 cd04122 Rab14 Rab14 subfamily. 93.6 0.054 1.2E-06 45.1 2.7 21 1-21 5-25 (166)
324 PRK00279 adk adenylate kinase; 93.6 0.042 9E-07 48.2 2.0 20 1-20 3-22 (215)
325 cd03296 ABC_CysA_sulfate_impor 93.6 0.042 9.1E-07 49.1 2.1 20 1-20 31-50 (239)
326 cd01394 radB RadB. The archaea 93.6 0.079 1.7E-06 46.5 3.8 38 2-41 23-60 (218)
327 cd03257 ABC_NikE_OppD_transpor 93.6 0.042 9.1E-07 48.6 2.1 20 1-20 34-53 (228)
328 cd03301 ABC_MalK_N The N-termi 93.6 0.043 9.3E-07 48.0 2.1 20 1-20 29-48 (213)
329 PRK11629 lolD lipoprotein tran 93.6 0.043 9.3E-07 48.8 2.1 20 1-20 38-57 (233)
330 KOG4579 Leucine-rich repeat (L 93.6 0.0096 2.1E-07 47.5 -1.8 75 177-264 51-132 (177)
331 cd03265 ABC_DrrA DrrA is the A 93.6 0.043 9.4E-07 48.3 2.1 20 1-20 29-48 (220)
332 cd04158 ARD1 ARD1 subfamily. 93.6 0.048 1E-06 45.7 2.3 21 1-21 2-22 (169)
333 cd03116 MobB Molybdenum is an 93.5 0.045 9.8E-07 45.5 2.0 20 1-20 4-23 (159)
334 PF01637 Arch_ATPase: Archaeal 93.5 0.036 7.8E-07 48.8 1.6 20 1-20 23-42 (234)
335 TIGR02211 LolD_lipo_ex lipopro 93.5 0.043 9.4E-07 48.3 2.1 20 1-20 34-53 (221)
336 PRK10247 putative ABC transpor 93.5 0.044 9.5E-07 48.5 2.1 21 1-21 36-56 (225)
337 cd04135 Tc10 TC10 subfamily. 93.5 0.055 1.2E-06 45.4 2.6 21 1-21 3-23 (174)
338 TIGR01618 phage_P_loop phage n 93.5 0.042 9.1E-07 48.1 1.9 19 2-20 16-34 (220)
339 TIGR02770 nickel_nikD nickel i 93.5 0.043 9.4E-07 48.7 2.1 21 1-21 15-35 (230)
340 cd04117 Rab15 Rab15 subfamily. 93.5 0.057 1.2E-06 44.8 2.7 21 1-21 3-23 (161)
341 PF00142 Fer4_NifH: 4Fe-4S iro 93.5 0.042 9.1E-07 49.0 1.9 20 1-20 3-22 (273)
342 PRK13538 cytochrome c biogenes 93.5 0.044 9.6E-07 47.6 2.1 20 1-20 30-49 (204)
343 PRK15177 Vi polysaccharide exp 93.5 0.044 9.6E-07 48.0 2.1 20 1-20 16-35 (213)
344 PRK11124 artP arginine transpo 93.5 0.044 9.6E-07 49.0 2.1 20 1-20 31-50 (242)
345 PRK11248 tauB taurine transpor 93.5 0.044 9.6E-07 49.5 2.1 20 1-20 30-49 (255)
346 PRK14732 coaE dephospho-CoA ki 93.5 0.046 1E-06 47.2 2.1 19 1-19 2-20 (196)
347 PTZ00369 Ras-like protein; Pro 93.5 0.057 1.2E-06 46.2 2.7 21 1-21 8-28 (189)
348 PRK14733 coaE dephospho-CoA ki 93.5 0.046 9.9E-07 47.4 2.0 20 1-20 9-28 (204)
349 cd04110 Rab35 Rab35 subfamily. 93.5 0.05 1.1E-06 47.0 2.3 21 1-21 9-29 (199)
350 TIGR03598 GTPase_YsxC ribosome 93.4 0.05 1.1E-06 46.1 2.2 22 1-22 21-42 (179)
351 cd01868 Rab11_like Rab11-like. 93.4 0.052 1.1E-06 45.1 2.3 21 1-21 6-26 (165)
352 TIGR01184 ntrCD nitrate transp 93.4 0.046 1E-06 48.5 2.1 20 1-20 14-33 (230)
353 cd03258 ABC_MetN_methionine_tr 93.4 0.047 1E-06 48.5 2.1 20 1-20 34-53 (233)
354 cd04156 ARLTS1 ARLTS1 subfamil 93.4 0.054 1.2E-06 44.7 2.4 21 1-21 2-22 (160)
355 PRK14737 gmk guanylate kinase; 93.4 0.048 1E-06 46.6 2.1 20 1-20 7-26 (186)
356 cd01130 VirB11-like_ATPase Typ 93.4 0.048 1E-06 46.7 2.0 20 1-20 28-47 (186)
357 cd03278 ABC_SMC_barmotin Barmo 93.4 0.051 1.1E-06 47.0 2.2 20 1-20 25-44 (197)
358 cd03246 ABCC_Protease_Secretio 93.4 0.05 1.1E-06 45.9 2.1 20 1-20 31-50 (173)
359 cd04108 Rab36_Rab34 Rab34/Rab3 93.4 0.063 1.4E-06 45.1 2.7 21 1-21 3-23 (170)
360 COG1121 ZnuC ABC-type Mn/Zn tr 93.3 0.049 1.1E-06 48.6 2.0 20 1-20 33-52 (254)
361 smart00174 RHO Rho (Ras homolo 93.3 0.072 1.6E-06 44.7 3.0 21 1-21 1-21 (174)
362 cd03224 ABC_TM1139_LivF_branch 93.3 0.048 1E-06 48.0 2.1 20 1-20 29-48 (222)
363 cd04144 Ras2 Ras2 subfamily. 93.3 0.054 1.2E-06 46.4 2.3 21 1-21 2-22 (190)
364 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.049 1.1E-06 48.9 2.1 21 1-21 28-48 (246)
365 cd03266 ABC_NatA_sodium_export 93.3 0.049 1.1E-06 47.8 2.1 20 1-20 34-53 (218)
366 cd04106 Rab23_lke Rab23-like s 93.3 0.064 1.4E-06 44.3 2.7 21 1-21 3-23 (162)
367 PRK13540 cytochrome c biogenes 93.3 0.05 1.1E-06 47.1 2.1 20 1-20 30-49 (200)
368 cd03219 ABC_Mj1267_LivG_branch 93.3 0.048 1E-06 48.5 2.0 20 1-20 29-48 (236)
369 PRK08116 hypothetical protein; 93.3 0.05 1.1E-06 49.5 2.1 32 2-35 118-149 (268)
370 PRK05642 DNA replication initi 93.3 0.061 1.3E-06 47.9 2.7 33 2-36 49-81 (234)
371 cd03247 ABCC_cytochrome_bd The 93.3 0.051 1.1E-06 46.1 2.1 21 1-21 31-51 (178)
372 cd01861 Rab6 Rab6 subfamily. 93.3 0.056 1.2E-06 44.6 2.3 21 1-21 3-23 (161)
373 cd03252 ABCC_Hemolysin The ABC 93.3 0.049 1.1E-06 48.5 2.1 20 1-20 31-50 (237)
374 cd02032 Bchl_like This family 93.3 0.047 1E-06 49.6 2.0 19 1-19 3-21 (267)
375 cd04118 Rab24 Rab24 subfamily. 93.3 0.053 1.2E-06 46.5 2.2 21 1-21 3-23 (193)
376 cd04141 Rit_Rin_Ric Rit/Rin/Ri 93.3 0.062 1.3E-06 45.3 2.6 20 1-20 5-24 (172)
377 PRK08154 anaerobic benzoate ca 93.3 0.047 1E-06 50.8 2.0 20 1-20 136-155 (309)
378 cd04127 Rab27A Rab27a subfamil 93.3 0.064 1.4E-06 45.3 2.7 21 1-21 7-27 (180)
379 cd04114 Rab30 Rab30 subfamily. 93.3 0.052 1.1E-06 45.3 2.1 20 1-20 10-29 (169)
380 cd01866 Rab2 Rab2 subfamily. 93.3 0.054 1.2E-06 45.3 2.1 21 1-21 7-27 (168)
381 PRK00698 tmk thymidylate kinas 93.3 0.046 9.9E-07 47.4 1.8 20 1-20 6-25 (205)
382 smart00763 AAA_PrkA PrkA AAA d 93.3 0.045 9.7E-07 51.4 1.8 20 1-20 81-100 (361)
383 cd01865 Rab3 Rab3 subfamily. 93.3 0.059 1.3E-06 44.9 2.4 22 1-22 4-25 (165)
384 TIGR01978 sufC FeS assembly AT 93.2 0.051 1.1E-06 48.6 2.1 21 1-21 29-49 (243)
385 cd03230 ABC_DR_subfamily_A Thi 93.2 0.054 1.2E-06 45.7 2.1 20 1-20 29-48 (173)
386 cd03232 ABC_PDR_domain2 The pl 93.2 0.053 1.1E-06 46.7 2.1 20 1-20 36-55 (192)
387 cd04125 RabA_like RabA-like su 93.2 0.059 1.3E-06 46.0 2.4 21 1-21 3-23 (188)
388 PRK14526 adenylate kinase; Pro 93.2 0.053 1.1E-06 47.4 2.1 20 1-20 3-22 (211)
389 PRK13235 nifH nitrogenase redu 93.2 0.049 1.1E-06 49.7 2.0 19 1-19 4-22 (274)
390 TIGR01189 ccmA heme ABC export 93.2 0.054 1.2E-06 46.8 2.1 21 1-21 29-49 (198)
391 PLN02318 phosphoribulokinase/u 93.2 0.05 1.1E-06 54.2 2.1 20 1-20 68-87 (656)
392 cd03218 ABC_YhbG The ABC trans 93.2 0.053 1.1E-06 48.1 2.1 20 1-20 29-48 (232)
393 PTZ00133 ADP-ribosylation fact 93.2 0.06 1.3E-06 45.8 2.3 21 1-21 20-40 (182)
394 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.2 0.056 1.2E-06 44.1 2.0 21 1-21 29-49 (144)
395 TIGR01277 thiQ thiamine ABC tr 93.2 0.054 1.2E-06 47.4 2.1 21 1-21 27-47 (213)
396 cd03223 ABCD_peroxisomal_ALDP 93.2 0.056 1.2E-06 45.3 2.1 21 1-21 30-50 (166)
397 cd04129 Rho2 Rho2 subfamily. 93.2 0.064 1.4E-06 45.8 2.5 20 1-20 4-23 (187)
398 PRK10416 signal recognition pa 93.2 0.052 1.1E-06 50.6 2.0 20 1-20 117-136 (318)
399 PTZ00361 26 proteosome regulat 93.2 0.051 1.1E-06 52.8 2.1 25 2-28 221-245 (438)
400 PRK06526 transposase; Provisio 93.2 0.051 1.1E-06 48.9 1.9 20 1-20 101-120 (254)
401 cd01897 NOG NOG1 is a nucleola 93.2 0.06 1.3E-06 44.8 2.3 21 1-21 3-23 (168)
402 cd04151 Arl1 Arl1 subfamily. 93.2 0.056 1.2E-06 44.6 2.1 20 1-20 2-21 (158)
403 PRK04213 GTP-binding protein; 93.2 0.061 1.3E-06 46.5 2.4 21 1-21 12-32 (201)
404 PRK13233 nifH nitrogenase redu 93.2 0.05 1.1E-06 49.7 1.9 20 1-20 5-24 (275)
405 PRK10619 histidine/lysine/argi 93.1 0.055 1.2E-06 48.9 2.1 21 1-21 34-54 (257)
406 COG0467 RAD55 RecA-superfamily 93.1 0.12 2.6E-06 46.7 4.4 51 1-56 26-76 (260)
407 smart00178 SAR Sar1p-like memb 93.1 0.06 1.3E-06 45.9 2.3 21 1-21 20-40 (184)
408 cd01858 NGP_1 NGP-1. Autoanti 93.1 0.061 1.3E-06 44.6 2.2 21 1-21 105-125 (157)
409 cd04145 M_R_Ras_like M-Ras/R-R 93.1 0.058 1.3E-06 44.6 2.1 20 1-20 5-24 (164)
410 PF13479 AAA_24: AAA domain 93.1 0.045 9.8E-07 47.9 1.5 18 1-18 6-23 (213)
411 TIGR00017 cmk cytidylate kinas 93.1 0.057 1.2E-06 47.4 2.1 20 1-20 5-24 (217)
412 PRK14242 phosphate transporter 93.1 0.055 1.2E-06 48.7 2.1 20 1-20 35-54 (253)
413 COG4608 AppF ABC-type oligopep 93.1 0.054 1.2E-06 48.4 1.9 20 1-20 42-61 (268)
414 TIGR02324 CP_lyasePhnL phospho 93.1 0.056 1.2E-06 47.7 2.1 20 1-20 37-56 (224)
415 PF00406 ADK: Adenylate kinase 93.1 0.056 1.2E-06 44.5 1.9 18 3-20 1-18 (151)
416 PRK07429 phosphoribulokinase; 93.1 0.054 1.2E-06 50.6 2.1 20 1-20 11-30 (327)
417 cd03216 ABC_Carb_Monos_I This 93.1 0.059 1.3E-06 45.0 2.1 20 1-20 29-48 (163)
418 PRK14245 phosphate ABC transpo 93.1 0.056 1.2E-06 48.6 2.1 19 1-19 32-50 (250)
419 CHL00181 cbbX CbbX; Provisiona 93.1 0.05 1.1E-06 50.0 1.8 19 2-20 63-81 (287)
420 cd03262 ABC_HisP_GlnQ_permease 93.1 0.057 1.2E-06 47.2 2.1 20 1-20 29-48 (213)
421 cd04132 Rho4_like Rho4-like su 93.1 0.07 1.5E-06 45.4 2.6 21 1-21 3-23 (187)
422 TIGR02903 spore_lon_C ATP-depe 93.1 0.05 1.1E-06 55.5 1.9 21 1-21 178-198 (615)
423 cd03215 ABC_Carb_Monos_II This 93.1 0.058 1.3E-06 45.9 2.1 20 1-20 29-48 (182)
424 PRK10575 iron-hydroxamate tran 93.1 0.055 1.2E-06 49.1 2.0 20 1-20 40-59 (265)
425 smart00072 GuKc Guanylate kina 93.1 0.077 1.7E-06 45.3 2.8 21 1-21 5-25 (184)
426 PRK11247 ssuB aliphatic sulfon 93.1 0.057 1.2E-06 48.8 2.1 20 1-20 41-60 (257)
427 cd03295 ABC_OpuCA_Osmoprotecti 93.1 0.057 1.2E-06 48.3 2.1 20 1-20 30-49 (242)
428 PRK09435 membrane ATPase/prote 93.0 0.056 1.2E-06 50.5 2.1 20 1-20 59-78 (332)
429 PRK13539 cytochrome c biogenes 93.0 0.059 1.3E-06 47.0 2.1 21 1-21 31-51 (207)
430 cd03268 ABC_BcrA_bacitracin_re 93.0 0.059 1.3E-06 47.0 2.1 20 1-20 29-48 (208)
431 PRK14247 phosphate ABC transpo 93.0 0.057 1.2E-06 48.5 2.1 20 1-20 32-51 (250)
432 TIGR00073 hypB hydrogenase acc 93.0 0.058 1.3E-06 47.0 2.1 20 1-20 25-44 (207)
433 PRK10908 cell division protein 93.0 0.059 1.3E-06 47.5 2.1 20 1-20 31-50 (222)
434 cd01895 EngA2 EngA2 subfamily. 93.0 0.061 1.3E-06 44.7 2.1 21 1-21 5-25 (174)
435 cd02042 ParA ParA and ParB of 93.0 0.061 1.3E-06 41.0 1.9 20 1-20 2-22 (104)
436 TIGR02236 recomb_radA DNA repa 93.0 0.15 3.2E-06 47.5 4.9 46 2-47 99-148 (310)
437 TIGR00064 ftsY signal recognit 93.0 0.058 1.3E-06 49.1 2.0 35 1-37 75-109 (272)
438 PF02374 ArsA_ATPase: Anion-tr 93.0 0.062 1.3E-06 49.8 2.3 17 2-18 5-21 (305)
439 cd01874 Cdc42 Cdc42 subfamily. 93.0 0.076 1.7E-06 44.9 2.7 21 1-21 4-24 (175)
440 PRK14528 adenylate kinase; Pro 93.0 0.06 1.3E-06 46.1 2.0 20 1-20 4-23 (186)
441 cd03267 ABC_NatA_like Similar 93.0 0.06 1.3E-06 48.0 2.1 20 1-20 50-69 (236)
442 cd03228 ABCC_MRP_Like The MRP 93.0 0.063 1.4E-06 45.2 2.1 20 1-20 31-50 (171)
443 TIGR02640 gas_vesic_GvpN gas v 93.0 0.12 2.6E-06 46.9 4.0 40 2-46 25-64 (262)
444 PRK09544 znuC high-affinity zi 92.9 0.061 1.3E-06 48.5 2.1 20 1-20 33-52 (251)
445 PTZ00132 GTP-binding nuclear p 92.9 0.063 1.4E-06 47.0 2.2 20 1-20 12-32 (215)
446 PRK10895 lipopolysaccharide AB 92.9 0.06 1.3E-06 48.1 2.1 20 1-20 32-51 (241)
447 cd01870 RhoA_like RhoA-like su 92.9 0.079 1.7E-06 44.5 2.7 21 1-21 4-24 (175)
448 PRK11264 putative amino-acid A 92.9 0.061 1.3E-06 48.3 2.1 20 1-20 32-51 (250)
449 TIGR00972 3a0107s01c2 phosphat 92.9 0.061 1.3E-06 48.3 2.1 20 1-20 30-49 (247)
450 cd01867 Rab8_Rab10_Rab13_like 92.9 0.067 1.5E-06 44.6 2.2 21 1-21 6-26 (167)
451 PF08423 Rad51: Rad51; InterP 92.9 0.14 3E-06 46.2 4.4 48 3-51 43-94 (256)
452 PRK14250 phosphate ABC transpo 92.9 0.062 1.3E-06 48.0 2.1 20 1-20 32-51 (241)
453 PLN03186 DNA repair protein RA 92.9 0.11 2.3E-06 49.0 3.7 54 3-57 128-185 (342)
454 PRK11300 livG leucine/isoleuci 92.9 0.061 1.3E-06 48.5 2.0 20 1-20 34-53 (255)
455 TIGR00750 lao LAO/AO transport 92.9 0.061 1.3E-06 49.8 2.0 20 1-20 37-56 (300)
456 PRK10463 hydrogenase nickel in 92.8 0.083 1.8E-06 48.2 2.8 20 1-20 107-126 (290)
457 cd04154 Arl2 Arl2 subfamily. 92.8 0.069 1.5E-06 44.9 2.2 21 1-21 17-37 (173)
458 PF00448 SRP54: SRP54-type pro 92.8 0.061 1.3E-06 46.4 1.9 76 1-80 4-83 (196)
459 COG3638 ABC-type phosphate/pho 92.8 0.065 1.4E-06 46.8 2.0 20 1-20 33-52 (258)
460 cd03231 ABC_CcmA_heme_exporter 92.8 0.066 1.4E-06 46.4 2.1 20 1-20 29-48 (201)
461 cd04149 Arf6 Arf6 subfamily. 92.8 0.064 1.4E-06 45.0 2.0 20 1-20 12-31 (168)
462 cd03233 ABC_PDR_domain1 The pl 92.8 0.063 1.4E-06 46.6 2.0 20 1-20 36-55 (202)
463 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.8 0.065 1.4E-06 47.4 2.1 20 1-20 51-70 (224)
464 PF01443 Viral_helicase1: Vira 92.8 0.068 1.5E-06 47.3 2.2 21 1-21 1-21 (234)
465 COG1136 SalX ABC-type antimicr 92.8 0.067 1.5E-06 46.9 2.1 20 1-20 34-53 (226)
466 cd04153 Arl5_Arl8 Arl5/Arl8 su 92.8 0.078 1.7E-06 44.7 2.5 21 1-21 18-38 (174)
467 PRK14256 phosphate ABC transpo 92.8 0.065 1.4E-06 48.2 2.1 20 1-20 33-52 (252)
468 cd03214 ABC_Iron-Siderophores_ 92.8 0.068 1.5E-06 45.4 2.1 20 1-20 28-47 (180)
469 cd04171 SelB SelB subfamily. 92.8 0.067 1.4E-06 44.2 2.0 20 1-20 3-22 (164)
470 PRK13231 nitrogenase reductase 92.8 0.064 1.4E-06 48.7 2.0 20 1-20 5-24 (264)
471 PLN02165 adenylate isopentenyl 92.8 0.065 1.4E-06 49.8 2.0 20 1-20 46-65 (334)
472 TIGR03873 F420-0_ABC_ATP propo 92.8 0.065 1.4E-06 48.4 2.1 21 1-21 30-50 (256)
473 cd04121 Rab40 Rab40 subfamily. 92.7 0.086 1.9E-06 45.2 2.7 21 1-21 9-29 (189)
474 PRK14239 phosphate transporter 92.7 0.066 1.4E-06 48.2 2.1 20 1-20 34-53 (252)
475 PRK14241 phosphate transporter 92.7 0.067 1.4E-06 48.4 2.1 20 1-20 33-52 (258)
476 PRK09493 glnQ glutamine ABC tr 92.7 0.068 1.5E-06 47.7 2.1 20 1-20 30-49 (240)
477 PF08433 KTI12: Chromatin asso 92.7 0.063 1.4E-06 48.8 1.8 20 1-20 4-23 (270)
478 PRK06921 hypothetical protein; 92.7 0.093 2E-06 47.6 3.0 33 2-36 121-154 (266)
479 PRK11831 putative ABC transpor 92.7 0.067 1.5E-06 48.7 2.1 20 1-20 36-55 (269)
480 cd04148 RGK RGK subfamily. Th 92.7 0.076 1.6E-06 46.8 2.3 21 1-21 3-23 (221)
481 PLN03187 meiotic recombination 92.7 0.14 3E-06 48.2 4.1 55 3-58 131-189 (344)
482 PRK13638 cbiO cobalt transport 92.7 0.067 1.4E-06 48.8 2.0 20 1-20 30-49 (271)
483 cd01873 RhoBTB RhoBTB subfamil 92.7 0.086 1.9E-06 45.5 2.6 20 1-20 5-25 (195)
484 cd04104 p47_IIGP_like p47 (47- 92.7 0.074 1.6E-06 46.0 2.2 20 1-20 4-23 (197)
485 PRK14274 phosphate ABC transpo 92.6 0.07 1.5E-06 48.3 2.1 20 1-20 41-60 (259)
486 COG4240 Predicted kinase [Gene 92.6 0.058 1.3E-06 46.7 1.4 20 1-20 53-72 (300)
487 cd03251 ABCC_MsbA MsbA is an e 92.6 0.071 1.5E-06 47.4 2.1 20 1-20 31-50 (234)
488 cd04134 Rho3 Rho3 subfamily. 92.6 0.089 1.9E-06 45.0 2.6 21 1-21 3-23 (189)
489 PTZ00454 26S protease regulato 92.6 0.071 1.5E-06 51.3 2.2 21 1-21 182-202 (398)
490 PRK14731 coaE dephospho-CoA ki 92.6 0.072 1.6E-06 46.5 2.0 20 1-20 8-27 (208)
491 PF00025 Arf: ADP-ribosylation 92.6 0.081 1.7E-06 44.7 2.3 21 1-21 17-37 (175)
492 TIGR03689 pup_AAA proteasome A 92.6 0.099 2.1E-06 51.8 3.2 20 2-21 220-239 (512)
493 PRK14238 phosphate transporter 92.6 0.071 1.5E-06 48.6 2.1 20 1-20 53-72 (271)
494 COG4619 ABC-type uncharacteriz 92.6 0.078 1.7E-06 43.9 2.0 20 1-20 32-51 (223)
495 COG1126 GlnQ ABC-type polar am 92.6 0.075 1.6E-06 45.9 2.0 20 1-20 31-50 (240)
496 cd03253 ABCC_ATM1_transporter 92.6 0.072 1.6E-06 47.4 2.1 20 1-20 30-49 (236)
497 cd04116 Rab9 Rab9 subfamily. 92.6 0.096 2.1E-06 43.7 2.7 21 1-21 8-28 (170)
498 TIGR03410 urea_trans_UrtE urea 92.6 0.072 1.6E-06 47.2 2.1 20 1-20 29-48 (230)
499 PRK11701 phnK phosphonate C-P 92.6 0.072 1.6E-06 48.2 2.1 20 1-20 35-54 (258)
500 TIGR03005 ectoine_ehuA ectoine 92.6 0.072 1.6E-06 48.0 2.1 20 1-20 29-48 (252)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-35 Score=300.27 Aligned_cols=279 Identities=27% Similarity=0.323 Sum_probs=189.7
Q ss_pred cCCCCCCCCCC-----hHHHHHHHHHHHHcCccEEeeeccCCCceeeEEcCcchHHHHHhhcc-----ccCceeeccc--
Q 041097 54 MPSPEGFIPDN-----NEATVEKYLEQLINGGFVGAGKRSDIGRINTCSIPGRCSPALLTVVF-----EGEFLISPIM-- 121 (391)
Q Consensus 54 ~~~~eg~~~~~-----~~~~~~~~~~~L~~k~~l~~~~~~~~~~~~~~~~hdl~~~~~~~~~~-----~~~~~~~~~~-- 121 (391)
.|+||||+... +++.|..|+.+|+.++++...+.. ++..+|+|||++|++|+++++ ++++.. ..+
T Consensus 436 yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~ 512 (889)
T KOG4658|consen 436 YWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVG 512 (889)
T ss_pred HHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcC
Confidence 49999988652 789999999999999999876654 677899999999999999998 555332 111
Q ss_pred ---CCcccccCceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCc-cccCCc
Q 041097 122 ---DQEVRLRENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLV-LIRYPS 196 (391)
Q Consensus 122 ---~~~~~~~~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~ 196 (391)
..+......+|++++.++.... ...... +++++|.+..+... .......+|..++.|+|||+++|. +.++|+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred ccccccccchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 1122245678999998443333 556666 88999999887531 112344668999999999999876 779999
Q ss_pred ccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCcc-Cc-------c-eeeEEecc-------------------
Q 041097 197 GIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQ-FH-------F-SLASLLLY------------------- 242 (391)
Q Consensus 197 ~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l-~~-------L-~L~~L~l~------------------- 242 (391)
.|++|.+||||+++++.+++||.+++ +||+..+.- .. + +||.|.+.
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 99999999999999999999999998 888886531 10 1 33333332
Q ss_pred -----------------------------------cccchhHHhcCCCCCCEEEecCCC-----C-----------CCch
Q 041097 243 -----------------------------------YQSLLSKSLCRLSCLESLKLANES-----K-----------MPRR 271 (391)
Q Consensus 243 -----------------------------------~~~~lp~~i~~l~~L~~L~l~~~~-----~-----------lp~L 271 (391)
.....+++++.|.+|+.|.+.... . +|++
T Consensus 670 L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 670 LENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 112234456667777777776610 0 2222
Q ss_pred hhh------cc---ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-ccCCCcccccceeee
Q 041097 272 SNI------IL---AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER-TMGIRAMPKLECLII 338 (391)
Q Consensus 272 ~~L------lp---~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 338 (391)
.++ .| ....+|++|+.|.+..|...+++++...++..+..+-+.++.+.+.. ..+.+.|+++..+.+
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 222 22 22234588888888888877777777777777776666655665552 333344444333333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.3e-23 Score=219.87 Aligned_cols=268 Identities=19% Similarity=0.108 Sum_probs=152.9
Q ss_pred eEEcCcchHHHHHhhccccCcee----ecccCCc-------ccccCceEEEEEeccCCCcc-cc-cCC-C-CCccEEEEE
Q 041097 95 TCSIPGRCSPALLTVVFEGEFLI----SPIMDQE-------VRLRENVKRFTAHRKLNDFA-FL-DDF-D-SFLHSLLYL 159 (391)
Q Consensus 95 ~~~~hdl~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~r~l~~~~~~~~~~-~~-~~~-~-~~lrsl~~~ 159 (391)
.++|||++++||..+++++.-.. ..+...+ .....+++.+++........ +. ... + ..++.|.+.
T Consensus 487 ~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 487 IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEe
Confidence 57899999999999987653100 0111100 01234566666652222211 11 112 2 677777665
Q ss_pred ecCCcC--CCchhhHHhhccC-CcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCc
Q 041097 160 TSGSQY--LDPTYCEKICKMF-KFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNS 230 (391)
Q Consensus 160 ~~~~~~--~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~ 230 (391)
...... .....++..+..+ ..||.|++.++.+..+|..+ ...+|+.|++.++.+..+|.++. .|+++++.
T Consensus 567 ~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred cccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 432110 0111233344443 46999999999988899887 46789999999998888887765 88888752
Q ss_pred -cCcc-------eeeEEecc---cccchhHHhcCCCCCCEEEecC-CC--CCC------chhhh-------ccccccCCC
Q 041097 231 -QFHF-------SLASLLLY---YQSLLSKSLCRLSCLESLKLAN-ES--KMP------RRSNI-------ILAEYQFPP 283 (391)
Q Consensus 231 -l~~L-------~L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~-~~--~lp------~L~~L-------lp~~~~l~~ 283 (391)
+..+ +|+.|++. ....+|.+++++++|+.|++.+ .. .+| +|+.| ++.+...++
T Consensus 646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~ 725 (1153)
T PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST 725 (1153)
T ss_pred CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccC
Confidence 3332 78899888 4667889999999999999987 22 222 11111 000111114
Q ss_pred CccEEEeecccCCCCChhhhcCCC-------------------------------CCCEEEcCCCCCcCccccCCCcccc
Q 041097 284 SLTHLSFSNIELMDDPIPALEKLS-------------------------------VLQVLKLKQNLYSEERTMGIRAMPK 332 (391)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~l~~l~-------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (391)
+|+.|++.++.+...|. . ..++ +|+.|+++.|......+...+.+++
T Consensus 726 nL~~L~L~~n~i~~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 726 NISWLDLDETAIEEFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CcCeeecCCCccccccc-c-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 55555555554433221 1 1223 3444444422222222222356667
Q ss_pred cceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 333 LECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 333 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
|+.|+|++|..++.+|..+ .+++|++|++++|.
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 7777777777677777655 56777777777665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=3.6e-15 Score=159.95 Aligned_cols=204 Identities=25% Similarity=0.261 Sum_probs=101.6
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccCCCCC-ccCCCCc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNIPSLK-SLPSSRK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~~~i~-~lp~~~~------ 222 (391)
+.+++|.+.++... ...+..+..+++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..++
T Consensus 140 ~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 140 PNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 45555554443321 123345566677777777777654 56666777777777777766654 3555444
Q ss_pred EEEeeCCccCcc---------eeeEEecc---cccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEE
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY---YQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLS 289 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~ 289 (391)
+|++++|.+... +|+.|+++ ....+|..++++++|++|++.+.. +...+| .+..+ ++|+.|+
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l-~~L~~L~ 290 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSL-QKLISLD 290 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe----eeccCchhHhhc-cCcCEEE
Confidence 666666654321 56666666 123456666666666666665511 000033 34444 4555555
Q ss_pred eecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEee
Q 041097 290 FSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELW 363 (391)
Q Consensus 290 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 363 (391)
+++|.+....+..++++++|+.|+++.|...+..+...+.+++|+.|++++|.-...+|.+++.+++|+.|+++
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 55444443333444444555555554333332222222344444444444443222344444444444444443
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=3.2e-17 Score=156.21 Aligned_cols=211 Identities=22% Similarity=0.213 Sum_probs=144.9
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc-------E
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK-------I 223 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~-------~ 223 (391)
+.+|++++..+... ...+++-+-.++.|.+|||+.|++.+.|..+.+-+++-.|+|++|+|..+|.++. .
T Consensus 78 p~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccc---cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 67777776655432 2234456667788888888888888888888887888888888888888888777 7
Q ss_pred EEeeCCccCcc---------------------------------------------------------eeeEEecc--cc
Q 041097 224 LRLSGNSQFHF---------------------------------------------------------SLASLLLY--YQ 244 (391)
Q Consensus 224 L~l~~~~l~~L---------------------------------------------------------~L~~L~l~--~~ 244 (391)
|||++|+++.| +|+.++++ +.
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 77777776655 44444444 44
Q ss_pred cchhHHhcCCCCCCEEEecCC---C-CC-----Cchhhh---------cc-ccccCCCCccEEEeecccCCCCC-hhhhc
Q 041097 245 SLLSKSLCRLSCLESLKLANE---S-KM-----PRRSNI---------IL-AEYQFPPSLTHLSFSNIELMDDP-IPALE 304 (391)
Q Consensus 245 ~~lp~~i~~l~~L~~L~l~~~---~-~l-----p~L~~L---------lp-~~~~l~~~L~~L~l~~~~~~~~~-~~~l~ 304 (391)
..+|+.+-++.+|+.|++++. . .+ .+++.| +| .++++ +.|+.|++.+|++.-+. +.-+|
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-HHHHHHHhccCcccccCCccchh
Confidence 455566666666666666651 1 11 122222 67 77777 77888877777665433 35677
Q ss_pred CCCCCCEEEcCCCCCcCccccCC--CcccccceeeeccccccccchHhhcCCCCCCEEEeeCCcHHHH
Q 041097 305 KLSVLQVLKLKQNLYSEERTMGI--RAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPEPELR 370 (391)
Q Consensus 305 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~l~ 370 (391)
+|.+|+.+....|... .+++ ..+++|+.|.++ |+.+-.+|+.|--|+.|+.|++.++| ++.
T Consensus 314 KL~~Levf~aanN~LE---lVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNp-nLV 376 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLE---LVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENP-NLV 376 (1255)
T ss_pred hhhhhHHHHhhccccc---cCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCc-Ccc
Confidence 7888877777633322 3333 477899999999 55788999999999999999999988 553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=1.4e-14 Score=155.43 Aligned_cols=211 Identities=23% Similarity=0.197 Sum_probs=135.8
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccCCCCC-ccCCCCc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNIPSLK-SLPSSRK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~~~i~-~lp~~~~------ 222 (391)
++++.|.+.++... ...+..+.+++.|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..++
T Consensus 164 ~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 164 SSLKVLDLGGNVLV----GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCCEEECccCccc----ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 67777776555431 124456777888888888888866 67788888888888888888766 5666555
Q ss_pred EEEeeCCccCcc---------eeeEEecc---cccchhHHhcCCCCCCEEEecCCC---CC-------Cchhhh------
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY---YQSLLSKSLCRLSCLESLKLANES---KM-------PRRSNI------ 274 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~~~---~l-------p~L~~L------ 274 (391)
+|++++|.+... +|+.|+++ -...+|.+++++++|++|++++.. .+ ++|+.|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 788887765432 67777777 223567777788888888776611 11 122211
Q ss_pred ----cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchH
Q 041097 275 ----IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHE 349 (391)
Q Consensus 275 ----lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 349 (391)
+| .+..+ ++|+.|++++|.+....+..++.+++|+.|+++.|...+..+.....+++|+.|++++|.-...+|.
T Consensus 320 ~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 320 FTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred cCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 34 45556 6666666666666555555666666666666665544443222234556777777776654446777
Q ss_pred hhcCCCCCCEEEeeCCc
Q 041097 350 QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 350 ~~~~l~~L~~L~l~~~~ 366 (391)
++..+++|+.|++.+|.
T Consensus 399 ~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 399 SLGACRSLRRVRLQDNS 415 (968)
T ss_pred HHhCCCCCCEEECcCCE
Confidence 77778888888887764
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=4.2e-14 Score=128.75 Aligned_cols=189 Identities=26% Similarity=0.264 Sum_probs=134.2
Q ss_pred hccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc-----EEEeeCCccCcc---------------
Q 041097 175 CKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK-----ILRLSGNSQFHF--------------- 234 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~-----~L~l~~~~l~~L--------------- 234 (391)
.+.+..+.+||+..|++.++|..++.+..|.+|+++++.|+.+|.+++ .|-+.+|.++.+
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred hcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 347889999999999999999999999999999999999999999999 455566766554
Q ss_pred -----------------------------------eeeEEecc--cccchhHHhcCCCC---CCEEEecCCC--CCC---
Q 041097 235 -----------------------------------SLASLLLY--YQSLLSKSLCRLSC---LESLKLANES--KMP--- 269 (391)
Q Consensus 235 -----------------------------------~L~~L~l~--~~~~lp~~i~~l~~---L~~L~l~~~~--~lp--- 269 (391)
..|.|+++ ....+|+..-.-.. ....+++... .+|
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 33344433 22233332111111 2222222211 112
Q ss_pred -chhhh-------------cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-----------
Q 041097 270 -RRSNI-------------IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER----------- 323 (391)
Q Consensus 270 -~L~~L-------------lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------- 323 (391)
.+..+ .| .++.+ ++|+.|+|++|-+...| ..++.+..|+.|+++.|.|..-.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l-~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQL-QKLTFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhh-hcceeeecccchhhhcc-hhhhhhhhhheecccccccccchHHHhhHHHHHH
Confidence 11111 55 78889 99999999999877766 67788888999999987653211
Q ss_pred ----------ccC--CCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 324 ----------TMG--IRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 324 ----------~~~--~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.+ .+.|.+|..|++.++ .+..+|..++++++|++|+++|.|
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 111 246779999999977 589999999999999999999988
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.44 E-value=4.8e-15 Score=141.55 Aligned_cols=190 Identities=26% Similarity=0.255 Sum_probs=149.3
Q ss_pred hHHhhccCCcccEEEcCCCccc--cCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcc--------
Q 041097 171 CEKICKMFKFLRVLDLGSLVLI--RYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHF-------- 234 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~--~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L-------- 234 (391)
+...++.++.||.+++..|++. -+|..|-+|..|..|+|+.|++++.|..+. .|+|++|+|+.+
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence 3355677888999999999987 789999999999999999999999999887 999999999876
Q ss_pred -eeeEEecc--cccchhHHhcCCCCCCEEEecCCC-------CCCchhhh--------------cc-ccccCCCCccEEE
Q 041097 235 -SLASLLLY--YQSLLSKSLCRLSCLESLKLANES-------KMPRRSNI--------------IL-AEYQFPPSLTHLS 289 (391)
Q Consensus 235 -~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~-------~lp~L~~L--------------lp-~~~~l~~~L~~L~ 289 (391)
.|-.|+++ ..+.+|+-+.+|.+|++|.+++.. .+|.+..| +| .+..+ .||+.++
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvD 228 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVD 228 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhcc
Confidence 67778888 678899999999999999999821 34544444 77 77888 8999999
Q ss_pred eecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeC
Q 041097 290 FSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWW 364 (391)
Q Consensus 290 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 364 (391)
++.|.+...| ..+-++++|+.|++++|.... .....+...+|+.|+++.+ ++..+|..+..|++|++|+..+
T Consensus 229 lS~N~Lp~vP-ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 229 LSENNLPIVP-ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ccccCCCcch-HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc
Confidence 9988876655 777899999999999666532 2223345567777777765 4677777777777776665543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=7.2e-12 Score=135.71 Aligned_cols=228 Identities=24% Similarity=0.233 Sum_probs=123.4
Q ss_pred CceEEEEEeccCCCcccccC-CC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCc-cccCCcccCCCCccc
Q 041097 129 ENVKRFTAHRKLNDFAFLDD-FD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLV-LIRYPSGIENLFLLR 205 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~-~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~~i~~l~~L~ 205 (391)
.+.+.|.+....... .... .. ++++.+.+...... ..+ +.+..+++|+.|++++|. +..+|..++++.+|+
T Consensus 611 ~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l----~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNL----KEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred cCCcEEECcCccccc-cccccccCCCCCEEECCCCCCc----CcC-CccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 455666665222222 2222 23 67777766543321 012 235566777777777765 557777777777777
Q ss_pred EEEccCC-CCCccCCCCc-----EEEeeCCc-cCcc-----eeeEEecc--cccchhHHhcCCCCCCEEEecC-CC----
Q 041097 206 YLKLNIP-SLKSLPSSRK-----ILRLSGNS-QFHF-----SLASLLLY--YQSLLSKSLCRLSCLESLKLAN-ES---- 266 (391)
Q Consensus 206 ~L~l~~~-~i~~lp~~~~-----~L~l~~~~-l~~L-----~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~-~~---- 266 (391)
+|++++| .++.+|..+. .|++++|. +..+ +|+.|+++ ....+|..+ .+++|++|.+.+ ..
T Consensus 685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhcc
Confidence 7777765 4666666543 66666652 2221 45555555 333444332 233343333322 00
Q ss_pred ----C--------CCchhhh----------cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCC--------------
Q 041097 267 ----K--------MPRRSNI----------IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVL-------------- 309 (391)
Q Consensus 267 ----~--------lp~L~~L----------lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------- 309 (391)
. .++|+.| +| .++.+ ++|+.|++.+|...... +....+++|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~L-P~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETL-PTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCee-CCCCCccccCEEECCCCCccccc
Confidence 0 0111211 44 45555 55555555554321111 111134444
Q ss_pred -------CEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 310 -------QVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 310 -------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.|+++.|... ..+...+.+++|+.|++++|++++.+|..+..+++|+.+++++|+
T Consensus 842 p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 44444433222 112223578899999999999999999888899999999999987
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-12 Score=122.67 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=30.9
Q ss_pred cccccceeeeccccccccch-HhhcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 366 (391)
.++.|+.|++.++ +++.+| ..+..+++|++|++.+++
T Consensus 390 gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 390 GLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 4889999999987 588888 467889999999998765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.28 E-value=8.9e-14 Score=126.62 Aligned_cols=191 Identities=24% Similarity=0.193 Sum_probs=125.0
Q ss_pred hHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc----------------------------
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK---------------------------- 222 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~---------------------------- 222 (391)
+++.+.++..+..++.+.+++..+|+.++.+..++.++.+.+.+.++|++++
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l 162 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKL 162 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555
Q ss_pred -EEEeeCCccCcc--------eeeEEecc--cccchhHHhcCCCCCCEEEecCCC-CCCchhhhccccccCCCCccEEEe
Q 041097 223 -ILRLSGNSQFHF--------SLASLLLY--YQSLLSKSLCRLSCLESLKLANES-KMPRRSNIILAEYQFPPSLTHLSF 290 (391)
Q Consensus 223 -~L~l~~~~l~~L--------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~-~lp~L~~Llp~~~~l~~~L~~L~l 290 (391)
.+++.+|.+..+ .|++|+.. ..+++|+.++.|.+|..|++.... .+ +|.+... +.|..|.+
T Consensus 163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~------lPef~gc-s~L~Elh~ 235 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF------LPEFPGC-SLLKELHV 235 (565)
T ss_pred HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc------CCCCCcc-HHHHHHHh
Confidence 344444444433 45555555 455666666666666666665422 11 6666667 78888888
Q ss_pred ecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCcHHHH
Q 041097 291 SNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPEPELR 370 (391)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~l~ 370 (391)
..|.++..+...+.+++++..|++.+|... +.+.+..-+.+|++|+++++ .++.+|.+++++ .|+.|.+.|.|-.-.
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred cccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHH
Confidence 888877777777789999999999955543 22333356778999999977 589999999999 999999999996544
Q ss_pred H
Q 041097 371 Q 371 (391)
Q Consensus 371 ~ 371 (391)
+
T Consensus 313 R 313 (565)
T KOG0472|consen 313 R 313 (565)
T ss_pred H
Confidence 3
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=1.4e-13 Score=111.61 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=104.9
Q ss_pred cCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecc--cccchhHHhcCC
Q 041097 177 MFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLY--YQSLLSKSLCRL 254 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~--~~~~lp~~i~~l 254 (391)
.+.+...|-++++++..+|..|..+.+|+.|++++++++++|.+++.|. +||.|.++ ....+|.++|.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~---------klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP---------KLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhch---------hhhheecchhhhhcCccccCCC
Confidence 4455666778888888888888888888888888888888877665221 33333333 233667777777
Q ss_pred CCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccc
Q 041097 255 SCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPK 332 (391)
Q Consensus 255 ~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (391)
+-|+.|++...+ . ++.+| .+..+ +.|+.|+|..|..+..| +..+++.+|+.|.+.+|.... .+-+.|.+..
T Consensus 102 p~levldltynnl~----e~~lpgnff~m-~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~-lpkeig~lt~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLN----ENSLPGNFFYM-TTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLS-LPKEIGDLTR 174 (264)
T ss_pred chhhhhhccccccc----cccCCcchhHH-HHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhh-CcHHHHHHHH
Confidence 777777776511 0 00055 44456 77777777777655544 677888888888887554322 1223477778
Q ss_pred cceeeeccccccccchHhhcCC
Q 041097 333 LECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 333 L~~L~l~~c~~l~~lp~~~~~l 354 (391)
|++|.|.++ .+..+|..++++
T Consensus 175 lrelhiqgn-rl~vlppel~~l 195 (264)
T KOG0617|consen 175 LRELHIQGN-RLTVLPPELANL 195 (264)
T ss_pred HHHHhcccc-eeeecChhhhhh
Confidence 888888876 477777766554
No 12
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.22 E-value=2.9e-11 Score=111.50 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=71.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCC-CCCChHHHHHHHHHHHHcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPSPEGF-IPDNNEATVEKYLEQLING 79 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~-~~~~~~~~~~~~~~~L~~k 79 (391)
|+|+||||+||||||+.+|++..++++|+.++|+.++...+...+.+++...+.-..... .....++....+.+.|.++
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence 689999999999999999997779999999999999999999999999887765543433 3334677788888888888
Q ss_pred ccEEeeecc
Q 041097 80 GFVGAGKRS 88 (391)
Q Consensus 80 ~~l~~~~~~ 88 (391)
+.+.+.++.
T Consensus 102 ~~LlVlDdv 110 (287)
T PF00931_consen 102 RCLLVLDDV 110 (287)
T ss_dssp SEEEEEEEE
T ss_pred cceeeeeee
Confidence 888887763
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-11 Score=123.61 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=62.7
Q ss_pred ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc---------------------ccCCCccccc
Q 041097 275 ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER---------------------TMGIRAMPKL 333 (391)
Q Consensus 275 lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------------------~~~~~~~~~L 333 (391)
+|-+..+ .+|+.|.|++|.+...|...+.+++.|+.|++++|...... +++...++.|
T Consensus 376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQL 454 (1081)
T ss_pred hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcc
Confidence 5544455 78888888888877777777788888888888766543211 4445678899
Q ss_pred ceeeecccccccc--chHhhcCCCCCCEEEeeCCc
Q 041097 334 ECLIINPYAHLKR--IHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 334 ~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.++++ |++++. +|..... ++|++|+++|++
T Consensus 455 ~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred eEEecc-cchhhhhhhhhhCCC-cccceeeccCCc
Confidence 999998 556664 3433322 789999999988
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.15 E-value=3.2e-10 Score=115.65 Aligned_cols=75 Identities=24% Similarity=0.159 Sum_probs=53.4
Q ss_pred CCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEe
Q 041097 283 PSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLEL 362 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 362 (391)
.+|+.|++++|.+...|. ..++|+.|+++.|.... ++ ..+.+|+.|+++++ +++.+|.++..+++|+.|++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Lss--IP--~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTS--LP--MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccCCCC----cccCCCEEEccCCcCCC--CC--cchhhhhhhhhccC-cccccChHHhhccCCCeEEC
Confidence 567777777776654331 13567777887555432 11 12447889999876 58899999999999999999
Q ss_pred eCCc
Q 041097 363 WWPE 366 (391)
Q Consensus 363 ~~~~ 366 (391)
+++|
T Consensus 453 s~N~ 456 (788)
T PRK15387 453 EGNP 456 (788)
T ss_pred CCCC
Confidence 9876
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=9.8e-13 Score=106.80 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=125.4
Q ss_pred ccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCc
Q 041097 197 GIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPR 270 (391)
Q Consensus 197 ~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~ 270 (391)
++-++.++.-|.++.+++...|+.|. .|++.+|+++ ++|.+|+.|++|+.|++.-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-------------~lp~~issl~klr~lnvgm------ 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-------------ELPTSISSLPKLRILNVGM------ 88 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-------------hcChhhhhchhhhheecch------
Confidence 34456677788999999999999887 7888888888 9999999999999999864
Q ss_pred hhhh--cc-ccccCCCCccEEEeecccCCCCC-hhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecccccccc
Q 041097 271 RSNI--IL-AEYQFPPSLTHLSFSNIELMDDP-IPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKR 346 (391)
Q Consensus 271 L~~L--lp-~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 346 (391)
++| +| .++.+ +.|+.|+|++|++.+.. +.-+-.|+.|+.|++.+|.+.. .+.+.|.+.+||-|.+..+. +-+
T Consensus 89 -nrl~~lprgfgs~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdnd-ll~ 164 (264)
T KOG0617|consen 89 -NRLNILPRGFGSF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDND-LLS 164 (264)
T ss_pred -hhhhcCccccCCC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCc-hhh
Confidence 333 88 99999 99999999999887654 3456677899999999887764 24456999999999999874 679
Q ss_pred chHhhcCCCCCCEEEeeC-----CcHHHH
Q 041097 347 IHEQLWCLKSLNKLELWW-----PEPELR 370 (391)
Q Consensus 347 lp~~~~~l~~L~~L~l~~-----~~~~l~ 370 (391)
+|..++.++.|++|+|.| .|+|+.
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 999999999999999987 466654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=3.2e-10 Score=116.07 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhh----cCCCCC
Q 041097 282 PPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQL----WCLKSL 357 (391)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~----~~l~~L 357 (391)
|++|+.|++++|.+...| ..+ .++|+.|+++.|.... ++......|+.|++++| ++..+|.++ ..++.+
T Consensus 345 ~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~---LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 345 PPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTN---LPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred cCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCC---CCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCc
Confidence 368888888888776544 222 2688888888665432 12222347888999876 577777655 345888
Q ss_pred CEEEeeCCcH
Q 041097 358 NKLELWWPEP 367 (391)
Q Consensus 358 ~~L~l~~~~~ 367 (391)
..|++.++|-
T Consensus 418 ~~L~L~~Npl 427 (754)
T PRK15370 418 TRIIVEYNPF 427 (754)
T ss_pred cEEEeeCCCc
Confidence 9999999884
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=4e-10 Score=115.35 Aligned_cols=171 Identities=24% Similarity=0.276 Sum_probs=89.5
Q ss_pred cccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc----EEEeeCCccCcc------eeeEEecc--cccch
Q 041097 180 FLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK----ILRLSGNSQFHF------SLASLLLY--YQSLL 247 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~----~L~l~~~~l~~L------~L~~L~l~--~~~~l 247 (391)
.|+.|++++|.+..+|..+. .+|++|++++|.++++|..+. .|++++|.+..+ +|+.|+++ ....+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L 277 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL 277 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc
Confidence 46666666666666665544 366666666666665554433 666666665544 46666665 34456
Q ss_pred hHHhcCCCCCCEEEecCCC--CCC-----chhhh---------ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCE
Q 041097 248 SKSLCRLSCLESLKLANES--KMP-----RRSNI---------ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQV 311 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~--~lp-----~L~~L---------lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 311 (391)
|..+. ++|++|++++.. .+| .|+.| +|. .+|++|+.|.+.+|.+...+ ..+ .++|+.
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~--~l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~ 350 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE--TLPPGLKTLEAGENALTSLP-ASL--PPELQV 350 (754)
T ss_pred ccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc--cccccceeccccCCccccCC-hhh--cCcccE
Confidence 66553 467777776622 111 12211 220 11256666666666555433 122 146666
Q ss_pred EEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCC
Q 041097 312 LKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 365 (391)
|+++.|.... ++....++|+.|++++| .+..+|..+. ++|+.|+++++
T Consensus 351 L~Ls~N~L~~---LP~~lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 351 LDVSKNQITV---LPETLPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred EECCCCCCCc---CChhhcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence 6666444321 11222346666666665 3566665543 24555555543
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.03 E-value=2.5e-10 Score=109.04 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=98.3
Q ss_pred HhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcceeeEEeccccc
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHFSLASLLLYYQS 245 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L~L~~L~l~~~~ 245 (391)
..|.++++|+.+.+..|.+..+|...+..-||..|+|..|.|.++-.+ +. +|||+.|.+.
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is------------- 162 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS------------- 162 (873)
T ss_pred HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-------------
Confidence 455666666666666666666666666666666666666655543211 11 5566665555
Q ss_pred chhH-HhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-
Q 041097 246 LLSK-SLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER- 323 (391)
Q Consensus 246 ~lp~-~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~- 323 (391)
++|. ++..-.++++|++++.+ +..++ .-.+..+ .+|..|.|+.|+++..|..++.+|++|+.|++..|......
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~-It~l~--~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNR-ITTLE--TGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred cccCCCCCCCCCceEEeecccc-ccccc--ccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 4442 34444566677666511 00000 0023345 55566666666666555555555666666666544432111
Q ss_pred --------------------ccCCC---cccccceeeeccccccccch-HhhcCCCCCCEEEeeCCc
Q 041097 324 --------------------TMGIR---AMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 324 --------------------~~~~~---~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 366 (391)
....| .+.++++|++..+ ++..+- .|+-.|++|+.|+++.+.
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhh
Confidence 22334 3447778888755 455554 467789999999988744
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=9.3e-11 Score=117.24 Aligned_cols=162 Identities=23% Similarity=0.238 Sum_probs=101.6
Q ss_pred hHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcc----------
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHF---------- 234 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L---------- 234 (391)
++..+..+.+|..++...|.+..+|..+.....|++|....|.++.+|.... +|||..|++..+
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 4456667777777777776666666666666666666666665555555444 556655555443
Q ss_pred ------------------------------------------------eeeEEecc--cccchhH-HhcCCCCCCEEEec
Q 041097 235 ------------------------------------------------SLASLLLY--YQSLLSK-SLCRLSCLESLKLA 263 (391)
Q Consensus 235 ------------------------------------------------~L~~L~l~--~~~~lp~-~i~~l~~L~~L~l~ 263 (391)
+||.|+++ ...++|. .+.++..|+.|+++
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 56666665 2344553 35556666666666
Q ss_pred CCCCCCchhhh--cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcc-cccceeeec
Q 041097 264 NESKMPRRSNI--IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAM-PKLECLIIN 339 (391)
Q Consensus 264 ~~~~lp~L~~L--lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~ 339 (391)
| ++| +| .+..+ ..|++|....|.+... |.+.+++.|+.++++.|..... ..+.... |+|++|+++
T Consensus 416 G-------NkL~~Lp~tva~~-~~L~tL~ahsN~l~~f--Pe~~~l~qL~~lDlS~N~L~~~-~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 416 G-------NKLTTLPDTVANL-GRLHTLRAHSNQLLSF--PELAQLPQLKVLDLSCNNLSEV-TLPEALPSPNLKYLDLS 484 (1081)
T ss_pred c-------chhhhhhHHHHhh-hhhHHHhhcCCceeec--hhhhhcCcceEEecccchhhhh-hhhhhCCCcccceeecc
Confidence 5 222 66 66667 7777777777766553 3788889999999986554432 2333333 899999999
Q ss_pred cccc
Q 041097 340 PYAH 343 (391)
Q Consensus 340 ~c~~ 343 (391)
++.+
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 8864
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=2.2e-08 Score=102.45 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=53.6
Q ss_pred cccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc---EEEeeCCccCcc-----eeeEEecc--cccchhH
Q 041097 180 FLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK---ILRLSGNSQFHF-----SLASLLLY--YQSLLSK 249 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~---~L~l~~~~l~~L-----~L~~L~l~--~~~~lp~ 249 (391)
+|+.|++.+|.+..+|.. +++|++|++++|.++.+|.... .|++++|.+..+ +|+.|++. ....+|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 677788888887777753 4577888888887777664433 777777766654 56667766 4445554
Q ss_pred HhcCCCCCCEEEecC
Q 041097 250 SLCRLSCLESLKLAN 264 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~ 264 (391)
.+++|+.|++++
T Consensus 300 ---~p~~L~~LdLS~ 311 (788)
T PRK15387 300 ---LPPGLQELSVSD 311 (788)
T ss_pred ---cccccceeECCC
Confidence 246788888876
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=2.5e-10 Score=108.74 Aligned_cols=172 Identities=23% Similarity=0.185 Sum_probs=118.5
Q ss_pred hHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc-----EEEeeCCccCcceeeEEeccccc
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK-----ILRLSGNSQFHFSLASLLLYYQS 245 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~-----~L~l~~~~l~~L~L~~L~l~~~~ 245 (391)
++..+..+-.|..+.++.|.+..+|+.++++..|.||+++.|+++.+|..++ .|-+++|++.
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~------------- 156 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT------------- 156 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccc-------------
Confidence 4455556666777788888888888888888888999988888888888887 6666777777
Q ss_pred chhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc
Q 041097 246 LLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT 324 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 324 (391)
.+|+.|+.+..|..|+.+..+ ++. +| .++.+ .+|+.|.+..|++...| .++..| .|..|++++|.. ...+
T Consensus 157 ~lp~~ig~~~tl~~ld~s~ne----i~s-lpsql~~l-~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScNki-s~iP 227 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNE----IQS-LPSQLGYL-TSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCNKI-SYLP 227 (722)
T ss_pred cCCcccccchhHHHhhhhhhh----hhh-chHHhhhH-HHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccCce-eecc
Confidence 788888877777777776622 111 45 66777 78888888777766555 555543 466777773332 2234
Q ss_pred cCCCcccccceeeeccccccccchHhh---cCCCCCCEEEeeCC
Q 041097 325 MGIRAMPKLECLIINPYAHLKRIHEQL---WCLKSLNKLELWWP 365 (391)
Q Consensus 325 ~~~~~~~~L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~~ 365 (391)
+....|..|++|-|.+++ |.+-|-.+ +...-.++|++..|
T Consensus 228 v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 455677777777777665 66666554 44555667776655
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=7e-10 Score=101.36 Aligned_cols=203 Identities=24% Similarity=0.225 Sum_probs=135.1
Q ss_pred hhHHhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccC-CCCCccCCCCc-------EEEeeCCccCcc------
Q 041097 170 YCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNI-PSLKSLPSSRK-------ILRLSGNSQFHF------ 234 (391)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~-~~i~~lp~~~~-------~L~l~~~~l~~L------ 234 (391)
..+..|+.++.||.|||+.|.|+ ..|..|..+..|..|-+.+ ++|+.+|+... .|.+.-+.+..+
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 45578899999999999999988 6678888888887776655 88999998876 344444443322
Q ss_pred ---eeeEEecc--cccchhH-HhcCCCCCCEEEecC-C---C-CCC----------------------------------
Q 041097 235 ---SLASLLLY--YQSLLSK-SLCRLSCLESLKLAN-E---S-KMP---------------------------------- 269 (391)
Q Consensus 235 ---~L~~L~l~--~~~~lp~-~i~~l~~L~~L~l~~-~---~-~lp---------------------------------- 269 (391)
+|+.|.+. ....++. ++..+..++++++.. . + .+|
T Consensus 162 dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence 55555555 4445554 566666666665543 1 0 111
Q ss_pred -----chhhh-------------cc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC-
Q 041097 270 -----RRSNI-------------IL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR- 328 (391)
Q Consensus 270 -----~L~~L-------------lp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~- 328 (391)
+++.+ .| -+..+ ++|++|+|++|+++......+..+..++.|.+..|... .++.+
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~---~v~~~~ 317 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE---FVSSGM 317 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH---HHHHHh
Confidence 11111 23 24567 88888888888877766677788888888888755543 23333
Q ss_pred --cccccceeeeccccccccc-hHhhcCCCCCCEEEeeC------CcHHH-HHHhhhcc
Q 041097 329 --AMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWW------PEPEL-RQQLREFE 377 (391)
Q Consensus 329 --~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~------~~~~l-~~~~~~~~ 377 (391)
.+.+|+.|++.++. ++.+ |..+..+.+|.+|++-+ |.-+| .+|++..+
T Consensus 318 f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred hhccccceeeeecCCe-eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 56688999999884 5554 67788899999999875 44443 36666643
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=1.8e-08 Score=94.28 Aligned_cols=205 Identities=24% Similarity=0.132 Sum_probs=120.6
Q ss_pred CCccEEEEEecCCcC-CCch-hhHHhhccCCcccEEEcCCCccc-cCCcccCCCCc---ccEEEccCCCCCc--------
Q 041097 151 SFLHSLLYLTSGSQY-LDPT-YCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFL---LRYLKLNIPSLKS-------- 216 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~---L~~L~l~~~~i~~-------- 216 (391)
+.++.+.+....... ...+ .....+..+..|+.|+++++.+. ..+..+..+.+ |++|+++++.+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 446666554433220 0111 23455666778888888888765 34444444444 8888888776651
Q ss_pred -c---CCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEe
Q 041097 217 -L---PSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSF 290 (391)
Q Consensus 217 -l---p~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l 290 (391)
+ |..+..|++++|.+.. .....++..+..+++|++|++.+.. .-..+.. ++ .+..+ ++|+.|++
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~~l~~~-~~L~~L~L 200 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEG--------ASCEALAKALRANRDLKELNLANNGIGDAGIRA-LAEGLKAN-CNLEVLDL 200 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCc--------hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH-HHHHHHhC-CCCCEEec
Confidence 1 1222355555544330 0111345667778889999987722 0000000 22 34456 79999999
Q ss_pred ecccCCCCC----hhhhcCCCCCCEEEcCCCCCcCccccCC-C----cccccceeeecccccc-----ccchHhhcCCCC
Q 041097 291 SNIELMDDP----IPALEKLSVLQVLKLKQNLYSEERTMGI-R----AMPKLECLIINPYAHL-----KRIHEQLWCLKS 356 (391)
Q Consensus 291 ~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~----~~~~L~~L~l~~c~~l-----~~lp~~~~~l~~ 356 (391)
++|.+.... ...+..+++|++|+++.|.......... . ..+.|++|++++|. + ..++..+..+++
T Consensus 201 ~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKES 279 (319)
T ss_pred cCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCC
Confidence 998876433 2345677889999999766554222111 1 24789999999884 4 245566677789
Q ss_pred CCEEEeeCCc
Q 041097 357 LNKLELWWPE 366 (391)
Q Consensus 357 L~~L~l~~~~ 366 (391)
|+++++++++
T Consensus 280 L~~l~l~~N~ 289 (319)
T cd00116 280 LLELDLRGNK 289 (319)
T ss_pred ccEEECCCCC
Confidence 9999998865
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=7.3e-08 Score=90.09 Aligned_cols=201 Identities=21% Similarity=0.108 Sum_probs=123.0
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccC---CcccEEEcCCCccc-----cCCcccCCC-CcccEEEccCCCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMF---KFLRVLDLGSLVLI-----RYPSGIENL-FLLRYLKLNIPSLKS----- 216 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~-----~~p~~i~~l-~~L~~L~l~~~~i~~----- 216 (391)
++++.+.+.++.... .....+..+ +.|+.|++++|.+. .+...+..+ .+|+.|++++|.+..
T Consensus 81 ~~L~~L~l~~~~~~~----~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 81 CGLQELDLSDNALGP----DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred CceeEEEccCCCCCh----hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 577777776555421 122333333 55999999999876 233456667 899999999998772
Q ss_pred cCC------CCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEE
Q 041097 217 LPS------SRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHL 288 (391)
Q Consensus 217 lp~------~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L 288 (391)
++. .+.+|++++|.+.. .....++..+..+++|++|++++.. .=..... ++ .+..+ ++|+.|
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~~~~~-~~L~~L 226 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGD--------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASA-LAETLASL-KSLEVL 226 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCch--------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHH-HHHHhccc-CCCCEE
Confidence 211 12266666665440 0111355667777899999998721 0000010 23 45667 899999
Q ss_pred EeecccCCCCChhhhc-C----CCCCCEEEcCCCCCcCccc---cC-CCcccccceeeecccccccc-----chHhhcCC
Q 041097 289 SFSNIELMDDPIPALE-K----LSVLQVLKLKQNLYSEERT---MG-IRAMPKLECLIINPYAHLKR-----IHEQLWCL 354 (391)
Q Consensus 289 ~l~~~~~~~~~~~~l~-~----l~~L~~L~l~~~~~~~~~~---~~-~~~~~~L~~L~l~~c~~l~~-----lp~~~~~l 354 (391)
++++|.+....+..+. . .++|+.|++.+|....... .. ...+++|++++++++. +.. +...+...
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEP 305 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhc
Confidence 9999987653322222 2 4799999999666542211 11 1355899999999874 432 33344444
Q ss_pred -CCCCEEEeeCCc
Q 041097 355 -KSLNKLELWWPE 366 (391)
Q Consensus 355 -~~L~~L~l~~~~ 366 (391)
+.|+++++.+.|
T Consensus 306 ~~~~~~~~~~~~~ 318 (319)
T cd00116 306 GNELESLWVKDDS 318 (319)
T ss_pred CCchhhcccCCCC
Confidence 688888886654
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=5.9e-08 Score=101.17 Aligned_cols=169 Identities=26% Similarity=0.210 Sum_probs=112.0
Q ss_pred CCcccEEEcCCCc--cccCCcc-cCCCCcccEEEccCC-CCCccCCCCc------EEEeeCCccCcceeeEEecccccch
Q 041097 178 FKFLRVLDLGSLV--LIRYPSG-IENLFLLRYLKLNIP-SLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLL 247 (391)
Q Consensus 178 ~~~L~~L~l~~~~--l~~~p~~-i~~l~~L~~L~l~~~-~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~l 247 (391)
.+.|++|-+.++. +...+.. |..++.||+|+|++| ++.+||.+|+ +|+++++.+. .+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-------------~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-------------HL 610 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-------------cc
Confidence 3468888877775 5555544 677999999999966 6789999998 6666666666 99
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCC--CCChhhhcCCCCCCEEEcCCCCCcCccc
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELM--DDPIPALEKLSVLQVLKLKQNLYSEERT 324 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 324 (391)
|.++++|++|.+|++...+. +.. +| ....+ ++|++|.+...... ......+.+|.+|+.+.++..+. ...
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~---l~~-~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~ 683 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGR---LES-IPGILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL 683 (889)
T ss_pred chHHHHHHhhheeccccccc---ccc-ccchhhhc-ccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH
Confidence 99999999999999987220 000 34 34458 99999999886522 22356677778888777762222 111
Q ss_pred cCCCcccccc----eeeeccccccccchHhhcCCCCCCEEEeeCCcH
Q 041097 325 MGIRAMPKLE----CLIINPYAHLKRIHEQLWCLKSLNKLELWWPEP 367 (391)
Q Consensus 325 ~~~~~~~~L~----~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 367 (391)
.....++.|. .+.+.+| .....+..+..+.+|+.|.|.+|..
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred hhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCC
Confidence 1113333333 3333333 3455666677778888888877763
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.9e-07 Score=78.53 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=8.7
Q ss_pred ccCCcccEEEcCCCccccCCcccC-CCCcccEEEccCCCCCccC
Q 041097 176 KMFKFLRVLDLGSLVLIRYPSGIE-NLFLLRYLKLNIPSLKSLP 218 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~~~p~~i~-~l~~L~~L~l~~~~i~~lp 218 (391)
.+...++.|+|+++.|+.+ +.++ .+.+|+.|++++|.|+.++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~ 58 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE 58 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc
Confidence 3444577888888887754 3455 5677888888888777654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=6.2e-09 Score=99.39 Aligned_cols=171 Identities=23% Similarity=0.216 Sum_probs=122.3
Q ss_pred hhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEeccc
Q 041097 170 YCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYY 243 (391)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~ 243 (391)
.++..+..+..|.+++++.|++..+|..++.| -|+.|-+++|+++.+|..++ .||.+.|.+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~----------- 179 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ----------- 179 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhh-----------
Confidence 35577788889999999999999999988877 58889999999999999998 6677777777
Q ss_pred ccchhHHhcCCCCCCEEEecCCCCCCchhhh--cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCc
Q 041097 244 QSLLSKSLCRLSCLESLKLANESKMPRRSNI--IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYS 320 (391)
Q Consensus 244 ~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~L--lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 320 (391)
++|+-++.+.+|+.|.+.. +++ +| .+..| .|..|++++|++...| -.+.+|..|++|.|..|...
T Consensus 180 --slpsql~~l~slr~l~vrR-------n~l~~lp~El~~L--pLi~lDfScNkis~iP-v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 180 --SLPSQLGYLTSLRDLNVRR-------NHLEDLPEELCSL--PLIRLDFSCNKISYLP-VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred --hchHHhhhHHHHHHHHHhh-------hhhhhCCHHHhCC--ceeeeecccCceeecc-hhhhhhhhheeeeeccCCCC
Confidence 8999999999999988876 222 66 66766 7899999999888777 56789999999999844433
Q ss_pred Ccc--ccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCcHH
Q 041097 321 EER--TMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPEPE 368 (391)
Q Consensus 321 ~~~--~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~ 368 (391)
... +-..|...=-++|++.-|.. . ..+.-.+.++-...+.|+.+
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~q~--~--~a~~~~t~~RP~~~~~c~~e 293 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQACQS--G--GALDLYTTLRPRHFSSCHVE 293 (722)
T ss_pred CChHHHHhccceeeeeeecchhccc--c--CCcccccccCCcccCCcchh
Confidence 210 11123333457788887731 1 11222344444445556643
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=9.9e-08 Score=84.62 Aligned_cols=188 Identities=19% Similarity=0.177 Sum_probs=103.6
Q ss_pred CCccEEEEEecCCcCCCc----hhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCcc----CCCCc
Q 041097 151 SFLHSLLYLTSGSQYLDP----TYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSL----PSSRK 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~l----p~~~~ 222 (391)
..+..|.+.......... ..++.-+..+++|+.+.++.|.-+++-.-...-+.|+.+..+.+.+... |....
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~ 261 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETIL 261 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhh
Confidence 567777776554432111 1222333456677777777766443322222334566666665544322 21111
Q ss_pred --------------------------EEEeeCCccCcc--------eeeEEecc-cccchhHHhcCCCCCCEEEecCCCC
Q 041097 223 --------------------------ILRLSGNSQFHF--------SLASLLLY-YQSLLSKSLCRLSCLESLKLANESK 267 (391)
Q Consensus 223 --------------------------~L~l~~~~l~~L--------~L~~L~l~-~~~~lp~~i~~l~~L~~L~l~~~~~ 267 (391)
++|+++|.+..+ .+|.|+++ +......++..|++|+.|++++
T Consensus 262 ~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~--- 338 (490)
T KOG1259|consen 262 ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSG--- 338 (490)
T ss_pred cCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeeccc---
Confidence 677777766643 56666666 2222334466677777777766
Q ss_pred CCchhhh--cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-ccCCCcccccceeeeccccc
Q 041097 268 MPRRSNI--IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER-TMGIRAMPKLECLIINPYAH 343 (391)
Q Consensus 268 lp~L~~L--lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~ 343 (391)
+.| +- |-.++ -|+++|.|..|.++. +.-+++|=+|.+|++++|...... +-..|.+|.|+.+.+.+++
T Consensus 339 ----N~Ls~~~Gwh~KL-GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP- 410 (490)
T KOG1259|consen 339 ----NLLAECVGWHLKL-GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP- 410 (490)
T ss_pred ----chhHhhhhhHhhh-cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-
Confidence 111 22 44456 677777777766544 456667777777777766554322 3334777777777777665
Q ss_pred cccchH
Q 041097 344 LKRIHE 349 (391)
Q Consensus 344 l~~lp~ 349 (391)
+..+|+
T Consensus 411 l~~~vd 416 (490)
T KOG1259|consen 411 LAGSVD 416 (490)
T ss_pred ccccch
Confidence 444443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=3.4e-07 Score=88.44 Aligned_cols=168 Identities=27% Similarity=0.276 Sum_probs=106.9
Q ss_pred HhhccCCcccEEEcCCCccccCCcccCCCC-cccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEeccccc
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYPSGIENLF-LLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQS 245 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~-~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~ 245 (391)
..+..+..++.|++.++.+..+|..++.+. +|++|+++++.+..+|..++ .|+++.|.+.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~------------- 176 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS------------- 176 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-------------
Confidence 334455677778888888777777777774 88888888887777765544 6666666666
Q ss_pred chhHHhcCCCCCCEEEecCCC--CCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCc
Q 041097 246 LLSKSLCRLSCLESLKLANES--KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEE 322 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~--~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 322 (391)
++|...+.+++|+.|++++.. . +| .+... .+|++|.+.++..... +..+.++.++..|.+..|....
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~-------l~~~~~~~-~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~- 246 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISD-------LPPEIELL-SALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLED- 246 (394)
T ss_pred hhhhhhhhhhhhhheeccCCcccc-------Cchhhhhh-hhhhhhhhcCCcceec-chhhhhcccccccccCCceeee-
Confidence 777766677777777777622 1 34 22333 5677777777643332 3556667777777655222211
Q ss_pred cccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCC
Q 041097 323 RTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 365 (391)
.+-..+.+++|+.|+++++ .++.++. ++.+.+|+.|++++.
T Consensus 247 ~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 247 LPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccchhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 1122356667777777765 4666665 777777777777764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=1e-06 Score=74.22 Aligned_cols=110 Identities=25% Similarity=0.219 Sum_probs=44.8
Q ss_pred CCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcccc-CCCccc
Q 041097 253 RLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTM-GIRAMP 331 (391)
Q Consensus 253 ~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 331 (391)
.+.+|+.|++++.. +.+ ++.+..+ ++|+.|.+++|.+..........+|+|+.|+++.|.......+ ....+|
T Consensus 40 ~l~~L~~L~Ls~N~----I~~-l~~l~~L-~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ----ITK-LEGLPGL-PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp T-TT--EEE-TTS------S---TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred hhcCCCEEECCCCC----Ccc-ccCccCh-hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 45666777776522 000 2234456 7888888888877664422224578888888886665432222 235778
Q ss_pred ccceeeeccccccccch----HhhcCCCCCCEEEeeCCcHHH
Q 041097 332 KLECLIINPYAHLKRIH----EQLWCLKSLNKLELWWPEPEL 369 (391)
Q Consensus 332 ~L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~~~~~~l 369 (391)
+|+.|++.+++ +..-+ .-+..+|+|+.||-..+.++=
T Consensus 114 ~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 114 KLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp T--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred CcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccHHH
Confidence 88888888776 23222 245788999999877666443
No 31
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.5e-06 Score=77.73 Aligned_cols=48 Identities=6% Similarity=-0.109 Sum_probs=42.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCC--cChHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLP--YDADQILYDI 49 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~--~~~~~i~~~~ 49 (391)
++|+|.+|+|||||++.+|++...+ +|+.++|+.++.+ +++.++++.+
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 4799999999999999999975444 8999999998887 8999988877
No 32
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=7.7e-07 Score=83.22 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=40.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCc--ChHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPY--DADQILYDII 50 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~--~~~~i~~~~~ 50 (391)
++|+|.+|+||||||+.||++...+ +|+.++|+.++.++ ++.++++++.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4799999999999999999964444 89999999999998 5666666553
No 33
>PRK08118 topology modulation protein; Reviewed
Probab=98.21 E-value=3.1e-07 Score=77.28 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccc-ccccEEE----EEEcCCCcChHHHHHHHHHhhcCCCCCCCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVK-HYFDCHA----WVQESLPYDADQILYDIIKFVMPSPEGFIP 62 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk-~~F~~~~----~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~ 62 (391)
|.|+|++|+||||||+.+++...+. .+||... |..++++ ....+++.++..-.|+-+|...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~~~~wVidG~~~ 69 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELVKEDEWIIDGNYG 69 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHhcCCCEEEeCCcc
Confidence 5799999999999999999865555 5677777 4445443 4444555555445677777543
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.07 E-value=2.6e-07 Score=84.91 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=40.0
Q ss_pred EEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCC-Cc-------EEEeeCCccCcc
Q 041097 183 VLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSS-RK-------ILRLSGNSQFHF 234 (391)
Q Consensus 183 ~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-~~-------~L~l~~~~l~~L 234 (391)
.++|+.|+|..+| ..|+.+.+||-|+|++|.|+.+-+. +. .++..+|+|+.|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3789999999888 4678999999999999999986443 33 445555888843
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=8.6e-07 Score=82.53 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCcccccceeeeccccccccc--hHh-----hcCCCCCCEEEeeCCcH
Q 041097 327 IRAMPKLECLIINPYAHLKRI--HEQ-----LWCLKSLNKLELWWPEP 367 (391)
Q Consensus 327 ~~~~~~L~~L~l~~c~~l~~l--p~~-----~~~l~~L~~L~l~~~~~ 367 (391)
.+.||.|.-|.++.| ++.++ |+. ...+++|++|++..++.
T Consensus 267 ~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 367888888888877 34433 433 24678899998887764
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2e-06 Score=80.16 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=18.2
Q ss_pred cccCCCCccEEEeecccCCCCC------hhhhcCCCCCCEEEcCCCC
Q 041097 278 EYQFPPSLTHLSFSNIELMDDP------IPALEKLSVLQVLKLKQNL 318 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~~~~ 318 (391)
++.| +.|+.|+++.|.+.... ......+++|++|++..|.
T Consensus 267 ~~~l-~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 267 VGTL-PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccc-cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 3445 55555555555443211 1112344555555555443
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.98 E-value=5e-06 Score=80.31 Aligned_cols=155 Identities=28% Similarity=0.287 Sum_probs=89.2
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCC-cccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------E
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFK-FLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------I 223 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~ 223 (391)
+.+..+.+...... .+++....+. +|+.|+++++.+..+|..++.+++|+.|+++.+++.++|...+ .
T Consensus 116 ~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34555555444432 2334444553 8889999999998888888899999999999999988888652 7
Q ss_pred EEeeCCccCcc--------eeeEEecc-c-ccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeec
Q 041097 224 LRLSGNSQFHF--------SLASLLLY-Y-QSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSN 292 (391)
Q Consensus 224 L~l~~~~l~~L--------~L~~L~l~-~-~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~ 292 (391)
|++++|++..+ .|++|.+. + ....+..+.+++++..+.+.+.. +.. +| .++.+ ++++.|++.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~----~~~-~~~~~~~l-~~l~~L~~s~ 264 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK----LED-LPESIGNL-SNLETLDLSN 264 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce----eee-ccchhccc-cccceecccc
Confidence 88888887732 23333333 1 23444444444444444433200 000 13 34444 5555555555
Q ss_pred ccCCCCChhhhcCCCCCCEEEcCCCC
Q 041097 293 IELMDDPIPALEKLSVLQVLKLKQNL 318 (391)
Q Consensus 293 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 318 (391)
|.+...+ .++.+.+|+.|+++.+.
T Consensus 265 n~i~~i~--~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 265 NQISSIS--SLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccc--cccccCccCEEeccCcc
Confidence 5554433 25555555555555333
No 38
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=2.4e-05 Score=79.82 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=71.4
Q ss_pred cchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc
Q 041097 245 SLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER 323 (391)
Q Consensus 245 ~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 323 (391)
..+|..+++|++|+.|++++.. +...+| .++.+ ++|+.|+|++|.+....+..+++|++|+.|+++.|...+..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~----l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNS----IRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCc----ccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 4788889999999999998722 100166 77888 99999999999888777788899999999999977776654
Q ss_pred ccCCCc-ccccceeeeccccccccch
Q 041097 324 TMGIRA-MPKLECLIINPYAHLKRIH 348 (391)
Q Consensus 324 ~~~~~~-~~~L~~L~l~~c~~l~~lp 348 (391)
+...+. +.++..+++.++..+-..|
T Consensus 507 P~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 507 PAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ChHHhhccccCceEEecCCccccCCC
Confidence 333332 3466677777665544333
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.91 E-value=1.5e-06 Score=77.26 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=81.6
Q ss_pred CCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcc-eeeEEecc--cccchhHHhcCC
Q 041097 178 FKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHF-SLASLLLY--YQSLLSKSLCRL 254 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L-~L~~L~l~--~~~~lp~~i~~l 254 (391)
.+.|..+|+++|.|..+-+++.-++.+|.|+++.|++..+-. +. .| +|++|+++ ...++...-.+|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La----------~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LA----------ELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hh----------hcccceEeecccchhHhhhhhHhhh
Confidence 345566666666666666666666666666666666543221 11 01 44444444 122555556678
Q ss_pred CCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCC-hhhhcCCCCCCEEEcCCCCCcC
Q 041097 255 SCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDP-IPALEKLSVLQVLKLKQNLYSE 321 (391)
Q Consensus 255 ~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 321 (391)
.|.++|.+.+.. ++. +..++++ -+|..|++.+|++++.. ...+|+||.|+.|.+.+|...+
T Consensus 352 GNIKtL~La~N~----iE~-LSGL~KL-YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQNK----IET-LSGLRKL-YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhhh----Hhh-hhhhHhh-hhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888999998711 000 2266788 89999999999887633 6789999999999999666544
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.3e-05 Score=50.89 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=35.5
Q ss_pred CcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCC
Q 041097 179 KFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPS 219 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~ 219 (391)
++|++|++++|++..+|..+++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999999999889999999999999999987763
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=5.4e-05 Score=71.76 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=81.8
Q ss_pred HhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCC-CCCccCC----CCcEEEeeCC-ccCcceeeEEecccccc
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIP-SLKSLPS----SRKILRLSGN-SQFHFSLASLLLYYQSL 246 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~-~i~~lp~----~~~~L~l~~~-~l~~L~L~~L~l~~~~~ 246 (391)
..+..+..++.|++++|.+..+| .+. .+|+.|.++++ .+..+|. .+..|++++| .+. .
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-------------s 109 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-------------G 109 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-------------c
Confidence 44566789999999999988888 222 26889999875 4555554 3337777666 444 5
Q ss_pred hhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeeccc-CCCCChhhhcCC-CCCCEEEcCCCCCcCccc
Q 041097 247 LSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIE-LMDDPIPALEKL-SVLQVLKLKQNLYSEERT 324 (391)
Q Consensus 247 lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 324 (391)
+|+ +|++|.+.+.. .+.+..+|++|+.|.+.++. ......+ ..+ ++|++|++..|... .
T Consensus 110 LP~------sLe~L~L~~n~--------~~~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i---~ 170 (426)
T PRK15386 110 LPE------SVRSLEIKGSA--------TDSIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI---I 170 (426)
T ss_pred ccc------ccceEEeCCCC--------CcccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCcc---c
Confidence 665 35666665411 11345677889988885432 1111111 134 58999999843322 1
Q ss_pred cCCCcccccceeeeccc
Q 041097 325 MGIRAMPKLECLIINPY 341 (391)
Q Consensus 325 ~~~~~~~~L~~L~l~~c 341 (391)
.+.+-..+|+.|.++.+
T Consensus 171 LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 171 LPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccccccCcEEEeccc
Confidence 22333458999998765
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=1.6e-05 Score=54.63 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=17.1
Q ss_pred cccccceeeeccccccccch-HhhcCCCCCCEEEeeCC
Q 041097 329 AMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWP 365 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 365 (391)
.+++|++|++++| .++.+| ..+..+++|++|+++++
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444433 344443 23455555555555544
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00016 Score=68.58 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=94.6
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCc-cccCCcccCCCCcccEEEccCC-CCCccCCCCcEEEeeC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLV-LIRYPSGIENLFLLRYLKLNIP-SLKSLPSSRKILRLSG 228 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~~i~~l~~L~~L~l~~~-~i~~lp~~~~~L~l~~ 228 (391)
..++.|.+..+... .++ .-...|+.|.+++|. +..+|+.+. .+|++|.+++| .+..+|..+..|+++.
T Consensus 52 ~~l~~L~Is~c~L~-----sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDCDIE-----SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCCCCc-----ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCC
Confidence 66778877766332 222 112469999998865 667787664 48999999998 8889999999888876
Q ss_pred CccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCC
Q 041097 229 NSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSV 308 (391)
Q Consensus 229 ~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~ 308 (391)
+... ....+|+++ +.|.+.+........ +| ..+|++|+.|++.+|.....| +.+. .+
T Consensus 122 n~~~----------~L~~LPssL------k~L~I~~~n~~~~~~--lp--~~LPsSLk~L~Is~c~~i~LP-~~LP--~S 178 (426)
T PRK15386 122 SATD----------SIKNVPNGL------TSLSINSYNPENQAR--ID--NLISPSLKTLSLTGCSNIILP-EKLP--ES 178 (426)
T ss_pred CCCc----------ccccCcchH------hheeccccccccccc--cc--cccCCcccEEEecCCCcccCc-cccc--cc
Confidence 6543 122566654 455543200000000 11 136789999999988754433 1111 48
Q ss_pred CCEEEcCCCCCcCccccCCCcc-cccceeeeccccc
Q 041097 309 LQVLKLKQNLYSEERTMGIRAM-PKLECLIINPYAH 343 (391)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~ 343 (391)
|+.|.++.+...... +....+ +++ .|.+.+|..
T Consensus 179 Lk~L~ls~n~~~sLe-I~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 179 LQSITLHIEQKTTWN-ISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred CcEEEeccccccccc-Cccccccccc-Eechhhhcc
Confidence 889998744322111 112233 366 788887743
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=5.8e-05 Score=51.84 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=29.1
Q ss_pred CcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccC
Q 041097 179 KFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLP 218 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp 218 (391)
+.|++|++++|++..+| ..+..+.+|++|++++|.+..+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~ 41 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP 41 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC
Confidence 35777888888777666 45677888888888777776655
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.62 E-value=1.5e-05 Score=72.37 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=46.6
Q ss_pred cccCCCCccEEEeecccCCCCC----hhhhcCCCCCCEEEcCCCCCcCccccC-----CCcccccceeeeccccccc---
Q 041097 278 EYQFPPSLTHLSFSNIELMDDP----IPALEKLSVLQVLKLKQNLYSEERTMG-----IRAMPKLECLIINPYAHLK--- 345 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~--- 345 (391)
+... ++|+.|+|..|.++... ...+..+++|+.|++.+|....+.... ....|+|+.|.+.+|. ++
T Consensus 209 l~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da 286 (382)
T KOG1909|consen 209 LEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDA 286 (382)
T ss_pred HHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHH
Confidence 3455 66666666666554432 234455566666666644443222110 1236677777766663 21
Q ss_pred --cchHhhcCCCCCCEEEeeCCcH
Q 041097 346 --RIHEQLWCLKSLNKLELWWPEP 367 (391)
Q Consensus 346 --~lp~~~~~l~~L~~L~l~~~~~ 367 (391)
.+-..+...+.|++|++++|.-
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 1223345566777777776653
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=0.00012 Score=74.75 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=47.5
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCC-C
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCL-K 355 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l-~ 355 (391)
.++.+ ++|+.|+|++|.+....+..++.+++|+.|+++.|...+..+...+.+++|+.|++++|.--..+|..++.+ .
T Consensus 437 ~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 437 DISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence 45555 666666666665554444555666666666666555544433333556666666666554223555555432 3
Q ss_pred CCCEEEeeCCc
Q 041097 356 SLNKLELWWPE 366 (391)
Q Consensus 356 ~L~~L~l~~~~ 366 (391)
++..+++.+++
T Consensus 516 ~~~~l~~~~N~ 526 (623)
T PLN03150 516 HRASFNFTDNA 526 (623)
T ss_pred cCceEEecCCc
Confidence 44455555443
No 47
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=9.5e-05 Score=69.77 Aligned_cols=49 Identities=6% Similarity=-0.072 Sum_probs=40.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCC--cChHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLP--YDADQILYDII 50 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~--~~~~~i~~~~~ 50 (391)
++|+|.+|+|||||++.+++... +++|+.++|+.++.+ .++.++++.+.
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 47999999999999999999533 337998889999877 78888888764
No 48
>PRK07261 topology modulation protein; Provisional
Probab=97.52 E-value=0.0001 Score=62.34 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=24.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccc-ccccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVK-HYFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk-~~F~~~~~~~ 35 (391)
|.|+|++|+||||||+.+.....++ -+.|...|-+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~ 38 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP 38 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc
Confidence 6899999999999999987632232 2345555543
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=3e-05 Score=69.18 Aligned_cols=164 Identities=21% Similarity=0.172 Sum_probs=94.8
Q ss_pred hHHhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccCCC-CCccCCCCcEEEeeCCccCcceeeEEecccccchh
Q 041097 171 CEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNIPS-LKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLS 248 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~~~-i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp 248 (391)
+...++.+..|+-|.+.|.++. .+-..|.+-.+|+.|+++.++ +++ ..+.
T Consensus 202 l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~----------------------------n~~~ 253 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE----------------------------NALQ 253 (419)
T ss_pred HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch----------------------------hHHH
Confidence 3344555566666666666655 333445555556666655542 221 0222
Q ss_pred HHhcCCCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeeccc--CCCCChhhh-cCCCCCCEEEcCCCCCcCcc
Q 041097 249 KSLCRLSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNIE--LMDDPIPAL-EKLSVLQVLKLKQNLYSEER 323 (391)
Q Consensus 249 ~~i~~l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~--~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 323 (391)
--+..++.|+.|+++... .-+. +. .+.+.+++|+.|+|+++. +....+..+ ..+|+|..|++++|......
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 345667777777776611 0000 11 233445788888888863 223334444 46789999999855433222
Q ss_pred c-cCCCcccccceeeeccccccccchHh---hcCCCCCCEEEeeCCcHH
Q 041097 324 T-MGIRAMPKLECLIINPYAHLKRIHEQ---LWCLKSLNKLELWWPEPE 368 (391)
Q Consensus 324 ~-~~~~~~~~L~~L~l~~c~~l~~lp~~---~~~l~~L~~L~l~~~~~~ 368 (391)
. .+.-.|+.|++|.++.|..+ +|.. +.+.|+|.+|++.||-++
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 2 22357888999999999643 3443 367788999998887554
No 50
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00016 Score=58.78 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=26.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc-ccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY-FDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~-F~~~~~~~ 35 (391)
|+|.||+|+||||+++.+.+ .++.. |....|++
T Consensus 8 i~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred EEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 68999999999999999998 45544 77666654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00019 Score=73.47 Aligned_cols=110 Identities=24% Similarity=0.303 Sum_probs=61.4
Q ss_pred hHHhcC-CCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCC-CcC-c
Q 041097 248 SKSLCR-LSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNL-YSE-E 322 (391)
Q Consensus 248 p~~i~~-l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~ 322 (391)
|..+|. +|+|++|.+.+.. .-.. +- -..+| ++|..|+++++.+.. +.-++.|+||+.|.+. |. +.. .
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sF-pNL~sLDIS~TnI~n--l~GIS~LknLq~L~mr-nLe~e~~~ 211 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASF-PNLRSLDISGTNISN--LSGISRLKNLQVLSMR-NLEFESYQ 211 (699)
T ss_pred HHHHhhhCcccceEEecCceecchh----HHHHhhcc-CccceeecCCCCccC--cHHHhccccHHHHhcc-CCCCCchh
Confidence 344444 6788888887711 0000 00 22457 788888887777655 3566777777777776 22 111 1
Q ss_pred cccCCCcccccceeeecccccccc--ch----HhhcCCCCCCEEEeeCC
Q 041097 323 RTMGIRAMPKLECLIINPYAHLKR--IH----EQLWCLKSLNKLELWWP 365 (391)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~c~~l~~--lp----~~~~~l~~L~~L~l~~~ 365 (391)
...+.-.+.+|+.||||.-..... +. +.-..||+|+.||.++.
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 122234677788888875543221 11 12245788888888763
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.23 E-value=0.0004 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.1
Q ss_pred cccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 331 PKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 331 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
++|++|+++++ +++.+|..++++++|++|++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 46888888877 578888778888888888888876
No 53
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.14 E-value=0.00022 Score=56.44 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|++|+||||+|+.+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.13 E-value=0.00016 Score=65.85 Aligned_cols=95 Identities=25% Similarity=0.345 Sum_probs=62.9
Q ss_pred chhHHhcCCCCCCEEEecCCCCCCchhhh-cc-ccccCCCCccEEEeecccCCCCCh----hhh-cCCCCCCEEEcCCCC
Q 041097 246 LLSKSLCRLSCLESLKLANESKMPRRSNI-IL-AEYQFPPSLTHLSFSNIELMDDPI----PAL-EKLSVLQVLKLKQNL 318 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~~lp~L~~L-lp-~~~~l~~~L~~L~l~~~~~~~~~~----~~l-~~l~~L~~L~l~~~~ 318 (391)
.+..++..+++|+.|++...- |..-... +. .+..+ ++|+.|++.+|.+..... ..+ +..|+|+.|.+.+|.
T Consensus 204 al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 455678899999999998610 0000000 22 34456 799999999998876542 233 346999999999666
Q ss_pred CcCcc----ccCCCcccccceeeecccc
Q 041097 319 YSEER----TMGIRAMPKLECLIINPYA 342 (391)
Q Consensus 319 ~~~~~----~~~~~~~~~L~~L~l~~c~ 342 (391)
...+. .......|.|+.|.+++|.
T Consensus 282 It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 282 ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 54332 1122458999999999995
No 55
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.08 E-value=0.0018 Score=51.85 Aligned_cols=82 Identities=7% Similarity=0.020 Sum_probs=53.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc-----ccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY-----FDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYLEQ 75 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~-----F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 75 (391)
+-|+|..|+||||+++.+.++ .... -..++|+.....-+.+.+.+.+...+.-...+ .....+....+...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLIDA 82 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHHH
Confidence 358999999999999998873 2211 23556887776668889988888877543333 23356677777777
Q ss_pred HHcCcc-EEeee
Q 041097 76 LINGGF-VGAGK 86 (391)
Q Consensus 76 L~~k~~-l~~~~ 86 (391)
+...+. +.+.+
T Consensus 83 l~~~~~~~lviD 94 (131)
T PF13401_consen 83 LDRRRVVLLVID 94 (131)
T ss_dssp HHHCTEEEEEEE
T ss_pred HHhcCCeEEEEe
Confidence 766655 34443
No 56
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.99 E-value=0.00067 Score=65.18 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=37.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILY 47 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~ 47 (391)
|-++|++|+||||+|+.+.+.......|+.+.|+++++.+...+.+.
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 45899999999999999987433345778899999998888777654
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.98 E-value=0.00023 Score=69.14 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=29.4
Q ss_pred hccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCcc
Q 041097 175 CKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSL 217 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~l 217 (391)
+..++.|..|++.++.+..+...+..+.+|++|++++|.|..+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i 133 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL 133 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc
Confidence 4566677777777777776555566777777777777766654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00065 Score=69.63 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=8.8
Q ss_pred HhcCCCCCCEEEecC
Q 041097 250 SLCRLSCLESLKLAN 264 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~ 264 (391)
.+.+|++|+.|+++.
T Consensus 215 ~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISR 229 (699)
T ss_pred HHhcccCCCeeeccc
Confidence 345566666666655
No 59
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.00059 Score=54.36 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999876
No 60
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.83 E-value=0.0036 Score=56.93 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=32.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFV 53 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~ 53 (391)
+.|+|..|+||||+++.+++.... ... ..+++. ....+..++++.+...+
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~l 95 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADF 95 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHc
Confidence 368999999999999999984221 111 122332 22356677777766554
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.72 E-value=0.00092 Score=58.05 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccccE
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYFDC 30 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F~~ 30 (391)
.||++|+||||||+.+.+ +....|..
T Consensus 55 f~GPPG~GKTTLA~IIA~--e~~~~~~~ 80 (233)
T PF05496_consen 55 FYGPPGLGKTTLARIIAN--ELGVNFKI 80 (233)
T ss_dssp EESSTTSSHHHHHHHHHH--HCT--EEE
T ss_pred EECCCccchhHHHHHHHh--ccCCCeEe
Confidence 699999999999999998 56655643
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.63 E-value=0.00013 Score=57.82 Aligned_cols=100 Identities=21% Similarity=0.173 Sum_probs=62.9
Q ss_pred CcccEEEcCCCccc---cCCcccCCCCcccEEEccCCCCCccCCCCc-------EEEeeCCccCcceeeEEecccccchh
Q 041097 179 KFLRVLDLGSLVLI---RYPSGIENLFLLRYLKLNIPSLKSLPSSRK-------ILRLSGNSQFHFSLASLLLYYQSLLS 248 (391)
Q Consensus 179 ~~L~~L~l~~~~l~---~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~-------~L~l~~~~l~~L~L~~L~l~~~~~lp 248 (391)
+.+..++|+.|++. ..+..+....+|...++++|.++.+|+.+. +|++++|.+. .+|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-------------dvP 93 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-------------DVP 93 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-------------hch
Confidence 34556677777655 333444555667777788877777776655 6777777777 777
Q ss_pred HHhcCCCCCCEEEecCCCCCCchhhh--cc-ccccCCCCccEEEeecccCCCCC
Q 041097 249 KSLCRLSCLESLKLANESKMPRRSNI--IL-AEYQFPPSLTHLSFSNIELMDDP 299 (391)
Q Consensus 249 ~~i~~l~~L~~L~l~~~~~lp~L~~L--lp-~~~~l~~~L~~L~l~~~~~~~~~ 299 (391)
..+..|+.|+.|+++... + .| -+..| .++-.|+..++...+.+
T Consensus 94 eE~Aam~aLr~lNl~~N~-------l~~~p~vi~~L-~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNP-------LNAEPRVIAPL-IKLDMLDSPENARAEID 139 (177)
T ss_pred HHHhhhHHhhhcccccCc-------cccchHHHHHH-HhHHHhcCCCCccccCc
Confidence 777777777777776511 1 33 33345 66666666665554444
No 63
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.56 E-value=0.0012 Score=57.06 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|.+|+||||+|+.+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999876
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.54 E-value=8.3e-05 Score=73.82 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=71.7
Q ss_pred cccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCE
Q 041097 180 FLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLES 259 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~ 259 (391)
.|.+.++++|.+..+-+++.-+.+|+.|+|+.|++.. ...+..+++|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-------------------------------v~~Lr~l~~Lkh 213 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-------------------------------VDNLRRLPKLKH 213 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-------------------------------hHHHHhcccccc
Confidence 3445566666666555666666666666666665432 235666777777
Q ss_pred EEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcccc-CCCcccccceeee
Q 041097 260 LKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTM-GIRAMPKLECLII 338 (391)
Q Consensus 260 L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 338 (391)
|+++.+. |.. +|.++.---.|..|.++||.+.. +..+.+|.+|+.|++++|+..+-... ..+++..|+.|.+
T Consensus 214 LDlsyN~----L~~-vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 214 LDLSYNC----LRH-VPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred cccccch----hcc-ccccchhhhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 7776511 100 34221110247777777777655 45667777777777776665442222 2356666666666
Q ss_pred cccc
Q 041097 339 NPYA 342 (391)
Q Consensus 339 ~~c~ 342 (391)
.+++
T Consensus 287 eGNP 290 (1096)
T KOG1859|consen 287 EGNP 290 (1096)
T ss_pred cCCc
Confidence 6654
No 65
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0015 Score=56.90 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|.||||||+.+.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 79999999999999998876
No 66
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.0021 Score=60.07 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.0
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccccEEEEEE
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQ 35 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~ 35 (391)
.||++|+||||||+.+-. ..+..|.....+.
T Consensus 53 l~GPPG~GKTTlA~liA~--~~~~~f~~~sAv~ 83 (436)
T COG2256 53 LWGPPGTGKTTLARLIAG--TTNAAFEALSAVT 83 (436)
T ss_pred EECCCCCCHHHHHHHHHH--hhCCceEEecccc
Confidence 599999999999999987 4666676666544
No 67
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.37 E-value=0.00019 Score=71.37 Aligned_cols=115 Identities=28% Similarity=0.287 Sum_probs=68.6
Q ss_pred chhHHhcCCCCCCEEEecCCCCCCchhhh--ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc
Q 041097 246 LLSKSLCRLSCLESLKLANESKMPRRSNI--ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER 323 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~~lp~L~~L--lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 323 (391)
.+-+++.-++.|+.|+++. +++ ...+..+ +.|+.|+|++|.+...|--....+ .|+.|.++.|....
T Consensus 178 ~mD~SLqll~ale~LnLsh-------Nk~~~v~~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-- 246 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSH-------NKFTKVDNLRRL-PKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-- 246 (1096)
T ss_pred hHHHHHHHHHHhhhhccch-------hhhhhhHHHHhc-ccccccccccchhccccccchhhh-hheeeeecccHHHh--
Confidence 5566777777788887776 111 1123346 778888888877665442222232 37888887443322
Q ss_pred ccCCCcccccceeeecccc--ccccchHhhcCCCCCCEEEeeCCcHHHHHH
Q 041097 324 TMGIRAMPKLECLIINPYA--HLKRIHEQLWCLKSLNKLELWWPEPELRQQ 372 (391)
Q Consensus 324 ~~~~~~~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~ 372 (391)
.-....+.+|+.|+++++. +.+.+- -++.|..|+.|++.|+|-....|
T Consensus 247 L~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCccccCHH
Confidence 2223467788888888653 222221 24567888999999988543333
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.36 E-value=0.0034 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-|+|..|+||||+|+.+++.
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999984
No 69
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.36 E-value=0.0019 Score=56.40 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+||||||+.+..
T Consensus 9 i~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999986
No 70
>PRK08233 hypothetical protein; Provisional
Probab=96.36 E-value=0.0019 Score=54.92 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|.+|+||||+|+.+..
T Consensus 6 I~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999886
No 71
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.34 E-value=0.002 Score=56.35 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||||+.++.
T Consensus 9 I~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999887
No 72
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.34 E-value=0.0024 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+-+
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999776
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.00018 Score=64.32 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=77.3
Q ss_pred chhHHhcCCCCCCEEEecCCC--CCCchhhhccccccCCCCccEEEeecccCCCCChhhhc-CC-CCCCEEEcCCCCCcC
Q 041097 246 LLSKSLCRLSCLESLKLANES--KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALE-KL-SVLQVLKLKQNLYSE 321 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~--~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~ 321 (391)
.+...|.+=.+|+.|+++..+ .-..++- -+.++ +.|..|+|+||.+..+....+- .. ++|..|+++++--+-
T Consensus 225 ~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl 300 (419)
T KOG2120|consen 225 PIVNTIAKNSNLVRLNLSMCSGFTENALQL---LLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL 300 (419)
T ss_pred HHHHHHhccccceeeccccccccchhHHHH---HHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh
Confidence 566778888899999998722 1001110 34567 8999999999987765443322 22 688899998433221
Q ss_pred -ccccC--CCcccccceeeecccccccc-chHhhcCCCCCCEEEeeCCc
Q 041097 322 -ERTMG--IRAMPKLECLIINPYAHLKR-IHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 322 -~~~~~--~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~ 366 (391)
..-++ ....|+|.+|++++|..++. .-..+-.++.|++|.++.|-
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 01111 13688999999999987764 22345678999999998775
No 74
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.26 E-value=0.019 Score=49.95 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc-ccEEEEEEcCCCcChHH----------------HHHHHHHhhcCCCCC-CCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY-FDCHAWVQESLPYDADQ----------------ILYDIIKFVMPSPEG-FIP 62 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~-F~~~~~~~vs~~~~~~~----------------i~~~~~~~~~~~~eg-~~~ 62 (391)
|+|+|-||+||||+|..+... -++.. ++..+. .-+.++++.. ++++..........+ ++.
T Consensus 3 IaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvV-DaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVV-DADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred EEEecCCCccHHHHHHHHHHH-HHhcCCceEEEE-eCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 689999999999998884331 11222 333332 2233444332 333222221111222 332
Q ss_pred CC--hHHHHHHHHHHHHcCccEEeeeccCCCceeeEEcCcchHHHHHhhccc
Q 041097 63 DN--NEATVEKYLEQLINGGFVGAGKRSDIGRINTCSIPGRCSPALLTVVFE 112 (391)
Q Consensus 63 ~~--~~~~~~~~~~~L~~k~~l~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~ 112 (391)
.. ..++-+.+..+--+-.++..-+....|.--+|-|-.++|.+...+..+
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~ 132 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILN 132 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcc
Confidence 22 344444555444443444333333233334788888999988877655
No 75
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.24 E-value=0.0051 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=20.5
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKH 26 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~ 26 (391)
-.||.+|+||||||+.+.+...-..
T Consensus 166 IlWGppG~GKTtlArlia~tsk~~S 190 (554)
T KOG2028|consen 166 ILWGPPGTGKTTLARLIASTSKKHS 190 (554)
T ss_pred EEecCCCCchHHHHHHHHhhcCCCc
Confidence 4799999999999999998644333
No 76
>PRK06762 hypothetical protein; Provisional
Probab=96.24 E-value=0.0023 Score=53.73 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 77
>PRK03839 putative kinase; Provisional
Probab=96.23 E-value=0.0022 Score=54.59 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.||.|+||||+|+.+.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 78
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.16 E-value=0.003 Score=53.54 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWV 34 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~ 34 (391)
|.++|+.|+||||+|+.+++ .+...+....++
T Consensus 10 I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 57899999999999999987 455555544444
No 79
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.14 E-value=0.035 Score=53.58 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=42.2
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc--cEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHcC
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF--DCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYLEQLING 79 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F--~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~L~~k 79 (391)
-|+|..|+||||+++.++++ ++... -.++++..........++..+...+............++....+...+..+
T Consensus 59 lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999984 33222 234444444444556666666665532111111112344555555555433
No 80
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0033 Score=56.48 Aligned_cols=154 Identities=15% Similarity=0.074 Sum_probs=84.4
Q ss_pred CcccEEEcCCCccccCC--cccC-CCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCC
Q 041097 179 KFLRVLDLGSLVLIRYP--SGIE-NLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLS 255 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p--~~i~-~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~ 255 (391)
..+..|.+.++.+...- ..|+ ...+++.++|.+|.|+.. .++-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW---------------------------seI~~ile~lP 97 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW---------------------------SEIGAILEQLP 97 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH---------------------------HHHHHHHhcCc
Confidence 34445666666665222 2232 244566666666655533 25566678899
Q ss_pred CCCEEEecCCCCCCchhhhccccccCC---CCccEEEeecccCCCCCh-hhhcCCCCCCEEEcCCCCCcCcccc---CCC
Q 041097 256 CLESLKLANESKMPRRSNIILAEYQFP---PSLTHLSFSNIELMDDPI-PALEKLSVLQVLKLKQNLYSEERTM---GIR 328 (391)
Q Consensus 256 ~L~~L~l~~~~~lp~L~~Llp~~~~l~---~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~~ 328 (391)
.|++|+++... |-|.|..+| .+|+.|.|.++.+...-. ..+..+|.++.|.++.|++.....- .+.
T Consensus 98 ~l~~LNls~N~-------L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~ 170 (418)
T KOG2982|consen 98 ALTTLNLSCNS-------LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED 170 (418)
T ss_pred cceEeeccCCc-------CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc
Confidence 99999998721 111233331 699999999888776443 4567888888888887754321111 112
Q ss_pred cccccceeeecccccc--ccchHhhcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHL--KRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.-+.++.|....|... ..+..--.-++++..+.+..||
T Consensus 171 ~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 171 WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 3334555555555311 1111111234555555555555
No 81
>PRK06696 uridine kinase; Validated
Probab=96.10 E-value=0.0053 Score=54.26 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|.+|+||||+|+.+..
T Consensus 25 I~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 25 VAIDGITASGKTTFADELAE 44 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999887
No 82
>PRK04040 adenylate kinase; Provisional
Probab=96.10 E-value=0.003 Score=54.14 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 5 i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.10 E-value=0.025 Score=45.02 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
+.|+|.+|+||||+|+.+...
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 468999999999999998873
No 84
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.03 E-value=0.0036 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||||+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999866
No 85
>PRK00625 shikimate kinase; Provisional
Probab=96.01 E-value=0.0035 Score=52.95 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++||.|+||||+++.+-+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999876
No 86
>PRK06217 hypothetical protein; Validated
Probab=95.97 E-value=0.0039 Score=53.27 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|.|+.|+||||+|+.+...
T Consensus 4 I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998874
No 87
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.97 E-value=0.0038 Score=53.35 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+..
T Consensus 2 i~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999887
No 88
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0035 Score=53.65 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|=||-|+||||||+.+.+
T Consensus 7 IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 7 IVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred EEEecccccCHHHHHHHHHH
Confidence 68999999999999999887
No 89
>PRK06547 hypothetical protein; Provisional
Probab=95.96 E-value=0.0041 Score=52.50 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+.+
T Consensus 18 i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 90
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.011 Score=53.30 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCccEEEeecccCCCCC-hhhhcCCCCCCEEEcCCCCCcCccccC-CCcccccceeeeccccccccchH------hhcCC
Q 041097 283 PSLTHLSFSNIELMDDP-IPALEKLSVLQVLKLKQNLYSEERTMG-IRAMPKLECLIINPYAHLKRIHE------QLWCL 354 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~------~~~~l 354 (391)
+|+..+.+..|.+.... -.....+|.+..|++..+....-.-++ ...||.|+.|.+++.+-+..+-. -++.|
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 56666666555332211 123344555556666534333221222 24667777777766653333321 23667
Q ss_pred CCCCEEEeeCC
Q 041097 355 KSLNKLELWWP 365 (391)
Q Consensus 355 ~~L~~L~l~~~ 365 (391)
++++.|+=+..
T Consensus 279 ~~v~vLNGskI 289 (418)
T KOG2982|consen 279 TKVQVLNGSKI 289 (418)
T ss_pred cceEEecCccc
Confidence 77777765443
No 91
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.95 E-value=0.0043 Score=52.81 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||||+.+..
T Consensus 2 i~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999876
No 92
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0053 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY 27 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~ 27 (391)
|||-|-+|.||||+|+.+++ .++..
T Consensus 11 IgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 79999999999999999988 45433
No 93
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.94 E-value=0.0038 Score=55.03 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 79999999999999999876
No 94
>PF05729 NACHT: NACHT domain
Probab=95.94 E-value=0.0048 Score=51.30 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=25.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc----ccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY----FDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~----F~~~~~~~vs 37 (391)
+-|+|.+|+||||+++.++++-.-... +.+.+|+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLR 43 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeeh
Confidence 458999999999999998874211221 4556665544
No 95
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.0044 Score=53.45 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|.+|+||||+|+.+..
T Consensus 20 IgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999886
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.89 E-value=0.04 Score=52.51 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.9
Q ss_pred cEEcCCCCcHHHHHHHHhCCcccccc-------ccEEEEEEcCCCcChHHHHHHHHHhh
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHY-------FDCHAWVQESLPYDADQILYDIIKFV 53 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~-------F~~~~~~~vs~~~~~~~i~~~~~~~~ 53 (391)
-|+|++|+||||+++.++++ +... |. .+++..........+...+...+
T Consensus 44 ~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~-~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 44 FIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVV-TVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHHhhccCCceE-EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999873 2211 22 33444333345566777766665
No 97
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.87 E-value=0.0045 Score=50.31 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++|++|+||||+|+.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999874
No 98
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.86 E-value=0.018 Score=49.00 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred cCCCCccEEEeecccCCCCC---hhhhcCCCCCCEEEcC
Q 041097 280 QFPPSLTHLSFSNIELMDDP---IPALEKLSVLQVLKLK 315 (391)
Q Consensus 280 ~l~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~ 315 (391)
.+ +.|++|.+-+|..+... .-.+.++|+|+.|+..
T Consensus 111 ~~-p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 111 SC-PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cC-CccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 45 56666666665443322 2345566666666665
No 99
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.83 E-value=0.0056 Score=53.71 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|++|+|||||+..+..+
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcC
Confidence 689999999999999998875
No 100
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.82 E-value=0.0045 Score=49.37 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|=|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 348999999999999999983
No 101
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.81 E-value=0.0053 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 5799999999999999988743
No 102
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.81 E-value=0.0062 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|+++|.+|+|||||++.+.++.
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999988653
No 103
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.79 E-value=0.0083 Score=53.13 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=29.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|+|+|..|.|||||++.+.. .+.++|.++.+++..
T Consensus 16 ~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred EEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 57999999999999999886 488899888877653
No 104
>PRK13949 shikimate kinase; Provisional
Probab=95.76 E-value=0.0053 Score=51.70 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+||.|+||||+++.+..
T Consensus 4 I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999886
No 105
>PRK13947 shikimate kinase; Provisional
Probab=95.75 E-value=0.0052 Score=51.77 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+||.|+||||+|+.+-+
T Consensus 4 I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999876
No 106
>PHA00729 NTP-binding motif containing protein
Probab=95.70 E-value=0.006 Score=53.42 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+||||||..+.+
T Consensus 20 IlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 107
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.69 E-value=0.0072 Score=50.48 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 108
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0015 Score=55.24 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC--CCcccccceeeeccccccccch-HhhcCCCCCCE
Q 041097 283 PSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG--IRAMPKLECLIINPYAHLKRIH-EQLWCLKSLNK 359 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~ 359 (391)
..++.++-+++.+..+...-+..++.++.|.+..|.+-..-.++ .+..|+|+.|+|++|+.+++-- .++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 46788888888887777788889999999999844443322221 1478899999999999887543 47789999999
Q ss_pred EEeeCCcH
Q 041097 360 LELWWPEP 367 (391)
Q Consensus 360 L~l~~~~~ 367 (391)
|.|.++|.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 99998874
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.68 E-value=0.0027 Score=61.75 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=81.6
Q ss_pred cCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCC
Q 041097 177 MFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSC 256 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~ 256 (391)
.+..++.+.+..+.+......++.+.+|.+|++.++.|+.+. ..+..|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~------------------------------~~l~~~~~ 119 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE------------------------------NLLSSLVN 119 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcc------------------------------cchhhhhc
Confidence 344555555666776665556777888888888888776543 12556777
Q ss_pred CCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc-cCCCcccccce
Q 041097 257 LESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT-MGIRAMPKLEC 335 (391)
Q Consensus 257 L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 335 (391)
|++|++++.. +.. +..+..+ +.|+.|++.+|.+.. ...+..+++|+.+++.+|....... + ...+.+|+.
T Consensus 120 L~~L~ls~N~-I~~----i~~l~~l-~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 120 LQVLDLSFNK-ITK----LEGLSTL-TLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred chheeccccc-ccc----ccchhhc-cchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 8888887621 000 1244566 778888888887765 3455557888888888555443211 1 367778888
Q ss_pred eeecccc
Q 041097 336 LIINPYA 342 (391)
Q Consensus 336 L~l~~c~ 342 (391)
+.+.++.
T Consensus 191 l~l~~n~ 197 (414)
T KOG0531|consen 191 LDLGGNS 197 (414)
T ss_pred HhccCCc
Confidence 8888774
No 110
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.68 E-value=0.0072 Score=53.86 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=20.6
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccccEEEEE
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWV 34 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~ 34 (391)
|+||+|+||||+++.+.+ .+...-..++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~--~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE--WLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHH--HHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHH--HHHhccCCceEE
Confidence 799999999999999987 344443444444
No 111
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.66 E-value=0.0059 Score=51.45 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|++|+||||+|+.+..
T Consensus 7 i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999886
No 112
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.65 E-value=0.006 Score=53.91 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=24.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|-|+|..|+||||||+.+++. .......+.++..+
T Consensus 41 lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 348999999999999999873 22223344555443
No 113
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.65 E-value=0.0067 Score=49.99 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 114
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.64 E-value=0.0079 Score=50.52 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=24.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccc-cccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKH-YFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~-~F~~~~~~~ 35 (391)
|-|.|..|+|||||++.+++ .++. -+....|++
T Consensus 2 i~iTG~pG~GKTTll~k~i~--~l~~~~~~v~Gf~t 35 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE--ELKKKGLPVGGFYT 35 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH--HHHHTCGGEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHH--HhhccCCccceEEe
Confidence 46899999999999999987 4543 456666665
No 115
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.007 Score=50.11 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|.|.|-+|+||||.++.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 6899999999999999974
No 116
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.61 E-value=0.017 Score=46.70 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=29.8
Q ss_pred cEEcCCCCcHHHHHHHHhCCcccccccc-EEEEEEcCCCcChHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFD-CHAWVQESLPYDADQILY 47 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~-~~~~~~vs~~~~~~~i~~ 47 (391)
=++|..|+|||+||+.+.. .+ . .+..+.++...+.++++.
T Consensus 3 lL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHH--Hh----hcceEEEEecccccccccee
Confidence 4799999999999999886 22 3 444567788788887655
No 117
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.52 E-value=0.0077 Score=51.18 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|+.|+||||+++.+...
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998763
No 118
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.49 E-value=0.01 Score=48.12 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999987
No 119
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.46 E-value=0.008 Score=51.94 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|||+|+.|+||||.|+.+-
T Consensus 5 IglTG~igsGKStva~~~~ 23 (201)
T COG0237 5 IGLTGGIGSGKSTVAKILA 23 (201)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 7999999999999999854
No 120
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.43 E-value=0.011 Score=45.60 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|=|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999765
No 121
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.42 E-value=0.009 Score=49.09 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 46899999999999999876
No 122
>PRK13946 shikimate kinase; Provisional
Probab=95.40 E-value=0.0088 Score=51.16 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.++||.|+||||+++.+.+
T Consensus 13 I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999886
No 123
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.40 E-value=0.0087 Score=51.15 Aligned_cols=20 Identities=10% Similarity=0.131 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||+|+.+..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 124
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.39 E-value=0.0092 Score=50.53 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 7 i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999886
No 125
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.37 E-value=0.0097 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||+|+.+-.
T Consensus 2 I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 126
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.36 E-value=0.0098 Score=46.47 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=19.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|.|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
No 127
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.35 E-value=0.009 Score=54.71 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+-.
T Consensus 65 IGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999987643
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=95.33 E-value=0.0093 Score=52.96 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=24.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
-+||..|+|||+||+++.+. +......+.|++.+
T Consensus 43 ~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 48999999999999999984 32222344566553
No 129
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.32 E-value=0.0075 Score=53.50 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-|+||+|.||||+.|.++..
T Consensus 22 ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 22 ILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred EEEEecCCCCchhHHHHHHHH
Confidence 458999999999999999873
No 130
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.31 E-value=0.01 Score=50.40 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||||+.+..
T Consensus 4 i~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57999999999999999987
No 131
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.30 E-value=0.01 Score=50.48 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|+.|+||||+++.+-+
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999764
No 132
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.30 E-value=0.0085 Score=47.35 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=17.0
Q ss_pred cEEcCCCCcHHHHHHHHhCCcccccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFD 29 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~ 29 (391)
=++|.+|+||||+|+.+.. .+...|.
T Consensus 3 Lleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEES---HHHHHHHHHHHH--HTT--EE
T ss_pred eeECCCccHHHHHHHHHHH--HcCCcee
Confidence 3799999999999999887 4555564
No 133
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.29 E-value=0.01 Score=51.43 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 27 i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 27 LWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 134
>PRK13695 putative NTPase; Provisional
Probab=95.27 E-value=0.012 Score=49.88 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=24.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccc-ccccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVK-HYFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk-~~F~~~~~~~ 35 (391)
|+|+|.+|+|||||++.+++. ++ .-|..+.|++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~--l~~~G~~~~g~~~ 36 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL--LKEEGYKVGGFYT 36 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEc
Confidence 589999999999999998873 33 2344455554
No 135
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.26 E-value=0.017 Score=51.33 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|.|||||++.+..
T Consensus 36 igi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999886
No 136
>PF13173 AAA_14: AAA domain
Probab=95.22 E-value=0.0094 Score=47.63 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
+.|.|.-|+||||+++.++.+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998863
No 137
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.22 E-value=0.015 Score=47.24 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=25.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccc-ccccEEEEEEcCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVK-HYFDCHAWVQESL 38 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk-~~F~~~~~~~vs~ 38 (391)
|+|+|.-|+|||||++.+.+ +++ .-....++.....
T Consensus 3 v~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred EEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 58999999999999999998 454 4444554555443
No 138
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.22 E-value=0.011 Score=49.95 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+.+
T Consensus 7 I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 57999999999999999876
No 139
>PRK14530 adenylate kinase; Provisional
Probab=95.21 E-value=0.011 Score=51.97 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|++|+||||+|+.+..
T Consensus 6 I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999865
No 140
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0093 Score=31.49 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.6
Q ss_pred ccceeeeccccccccchHhhcCC
Q 041097 332 KLECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 332 ~L~~L~l~~c~~l~~lp~~~~~l 354 (391)
+|++|++++| +++.+|.++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 788999887653
No 141
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.18 E-value=0.012 Score=50.43 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|+.|+|||||++.+...
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 579999999999999999763
No 142
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.16 E-value=0.016 Score=48.02 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999987
No 143
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.15 E-value=0.018 Score=47.62 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=26.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLP 39 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~ 39 (391)
+.|+|..|+||||+++.+... ....-..+.|+.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcc
Confidence 469999999999999998762 3322346677665544
No 144
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.14 E-value=0.011 Score=51.29 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||||+.+..
T Consensus 8 i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999987
No 145
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.14 E-value=0.012 Score=50.07 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|++|+||||+|+.+..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 146
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.13 E-value=0.012 Score=53.80 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-|||||||++..+..
T Consensus 3 ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHH
Confidence 68999999999998877643
No 147
>PRK13975 thymidylate kinase; Provisional
Probab=95.12 E-value=0.011 Score=50.97 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+.+
T Consensus 5 I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999887
No 148
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.12 E-value=0.028 Score=49.01 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=31.3
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILY 47 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~ 47 (391)
-|+|.+|+||||++..+..+ ....-..++|+.... |+.+++.+
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 58999999999999987653 222345788887654 77776555
No 149
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.09 E-value=0.034 Score=51.68 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=44.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHH-HhhcCCCCCCCCC--ChHHHHHHHHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDII-KFVMPSPEGFIPD--NNEATVEKYLEQLI 77 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~-~~~~~~~eg~~~~--~~~~~~~~~~~~L~ 77 (391)
-+.|.|||||||.|-+.-- .+-........+.++...+..+++...+ ..-..+++.+... +.+...++++.++.
T Consensus 6 ~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 6 FFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 3689999999999998322 1223335677888887777777666411 1112333332221 25666667776665
No 150
>PRK06620 hypothetical protein; Validated
Probab=95.08 E-value=0.014 Score=51.20 Aligned_cols=20 Identities=10% Similarity=-0.107 Sum_probs=18.0
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
=|||..|+|||+|++.+.+.
T Consensus 48 ~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 48 LIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 38999999999999998874
No 151
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.07 E-value=0.015 Score=48.19 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999984
No 152
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.05 E-value=0.014 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||++.+.++
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998764
No 153
>PRK13948 shikimate kinase; Provisional
Probab=95.03 E-value=0.013 Score=49.87 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.++||.|+||||+++.+-+
T Consensus 13 I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999876
No 154
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.03 E-value=0.017 Score=47.98 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|.+|+|||||+..+.++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 5799999999999999987753
No 155
>PRK06761 hypothetical protein; Provisional
Probab=95.02 E-value=0.029 Score=51.09 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|.|+.|+||||+++.+.+.
T Consensus 6 IvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 6 IIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999983
No 156
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.00 E-value=0.014 Score=47.08 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||.+.+..
T Consensus 14 ~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEESTTSSHHHHHHHHTT
T ss_pred EEEEccCCCccccceeeecc
Confidence 58999999999999999987
No 157
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.99 E-value=0.03 Score=50.61 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=29.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccc-cEEEEEEcCCCcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYF-DCHAWVQESLPYD 41 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F-~~~~~~~vs~~~~ 41 (391)
++|.|-.|+||||||+.++++ ++..| +.|+++-+.+...
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred EEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcH
Confidence 589999999999999999984 55455 4666766665433
No 158
>PRK12377 putative replication protein; Provisional
Probab=94.97 E-value=0.013 Score=52.52 Aligned_cols=35 Identities=14% Similarity=-0.049 Sum_probs=25.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
+.++|..|+|||+||.++.+ .+.....-+.++++.
T Consensus 104 l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP 138 (248)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH
Confidence 35899999999999999998 344333445665543
No 159
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.96 E-value=0.015 Score=48.85 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||++.+.+.
T Consensus 17 v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 17 ILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEccCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 160
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.95 E-value=0.015 Score=48.91 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 9 i~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred EEEECCCCChHHHHHHHHHH
Confidence 58999999999999999886
No 161
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.003 Score=56.21 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=61.0
Q ss_pred ccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-ccCCCcccccceeeeccccccccchH-----hhc
Q 041097 279 YQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER-TMGIRAMPKLECLIINPYAHLKRIHE-----QLW 352 (391)
Q Consensus 279 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-----~~~ 352 (391)
.++ +.|+.|.|+-|++.. +..+..+++|+.|+|..|+..... ......+|+|+.|-|..++--..-+. .+.
T Consensus 38 ~kM-p~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKM-PLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred Hhc-ccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 356 778888888877665 556677788888888777765322 22235788888888876543333332 346
Q ss_pred CCCCCCEEEeeCCcHH-HHHHhhh
Q 041097 353 CLKSLNKLELWWPEPE-LRQQLRE 375 (391)
Q Consensus 353 ~l~~L~~L~l~~~~~~-l~~~~~~ 375 (391)
.||+|++|+=....++ +++-++.
T Consensus 115 ~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 115 VLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred HcccchhccCccccHHHHHHHHhc
Confidence 7888888887666655 4444443
No 162
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.93 E-value=0.018 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 163
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.92 E-value=0.017 Score=46.99 Aligned_cols=22 Identities=5% Similarity=0.228 Sum_probs=19.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|+|+|..|+|||||+..+..+.
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999987754
No 164
>PRK05439 pantothenate kinase; Provisional
Probab=94.91 E-value=0.014 Score=53.81 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+..
T Consensus 89 IgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999865
No 165
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.90 E-value=0.016 Score=51.72 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=24.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
-|||..|+|||+|++++++. +...-..+.|++++
T Consensus 49 ~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 49 YLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 58999999999999999873 22222345566654
No 166
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.90 E-value=0.017 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|+|+|..|+|||||++.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 167
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.89 E-value=0.011 Score=52.05 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.8
Q ss_pred ccCCCCccEEEeecc--cCCCCChhhhcCCCCCCEEEcCCCCCcCc-cccCCCcccccceeeeccccccccch----Hhh
Q 041097 279 YQFPPSLTHLSFSNI--ELMDDPIPALEKLSVLQVLKLKQNLYSEE-RTMGIRAMPKLECLIINPYAHLKRIH----EQL 351 (391)
Q Consensus 279 ~~l~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~lp----~~~ 351 (391)
..+ ++|++|.++.| +..........++|+|++|+++.|..... ...+...+++|..|++.+|.-.. +- .-+
T Consensus 62 P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 62 PKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 346 78999999888 44433334445669999999996655422 22233577788899999886332 21 234
Q ss_pred cCCCCCCEEEeeCC
Q 041097 352 WCLKSLNKLELWWP 365 (391)
Q Consensus 352 ~~l~~L~~L~l~~~ 365 (391)
.-+++|++|+-..+
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 56788888875543
No 168
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.026 Score=49.47 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|-.|+|||||++.+.-
T Consensus 36 lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 48999999999999999854
No 169
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.86 E-value=0.017 Score=47.47 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|++.|.+|+||||+++.+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999865
No 170
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.066 Score=43.25 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|=|.|-+|+||||+++.+..
T Consensus 10 ILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred EEEeCCCCCCchhHHHHHHH
Confidence 45899999999999999875
No 171
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.016 Score=49.04 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQ 44 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~ 44 (391)
|||-|+.-.||||||+.+. ..|..|..+..+.=|-.+.
T Consensus 7 vgiSG~TnsGKTTLak~l~------~~f~~~~lIhqDDFyKp~~ 44 (225)
T KOG3308|consen 7 VGISGCTNSGKTTLAKSLH------RFFPGCSLIHQDDFYKPEN 44 (225)
T ss_pred EEeecccCCCHhHHHHHHH------HHccCCeeeccccccCchh
Confidence 6888888899999999944 5787777666554444444
No 172
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.82 E-value=0.021 Score=46.71 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998875
No 173
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.81 E-value=0.018 Score=47.04 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.++|..|+|||||+..+.++
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998775
No 174
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.81 E-value=0.017 Score=48.66 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+-.
T Consensus 5 i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999876
No 175
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.80 E-value=0.039 Score=49.06 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=35.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc----ccEEEEEEcCCCcChHHHHHHHHHhhcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY----FDCHAWVQESLPYDADQILYDIIKFVMP 55 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~----F~~~~~~~vs~~~~~~~i~~~~~~~~~~ 55 (391)
+.|+|.+|+||||||..+.-+...+.. -..++|+.-...|+.+++.+ +.....+
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~ 79 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGL 79 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhcc
Confidence 368999999999999998643222221 35788888777787766544 3333333
No 176
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.78 E-value=0.02 Score=47.16 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998753
No 177
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.76 E-value=0.02 Score=47.46 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998764
No 178
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.76 E-value=0.018 Score=48.82 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.+.|+.|+||||+|+.+.+
T Consensus 5 i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 5 IILNGGSSAGKSSIARALQS 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999876
No 179
>PRK13768 GTPase; Provisional
Probab=94.75 E-value=0.017 Score=52.13 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.||+||||++..+..
T Consensus 5 i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 57899999999998888654
No 180
>PLN02796 D-glycerate 3-kinase
Probab=94.73 E-value=0.017 Score=53.77 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+|||||++.+..
T Consensus 103 IGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 69999999999999999886
No 181
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.73 E-value=0.018 Score=55.04 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.5
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF 28 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F 28 (391)
-+||.+|+||||+|+++++ ++...|
T Consensus 160 LL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 160 LLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred EEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 4799999999999999998 344443
No 182
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.73 E-value=0.02 Score=42.70 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|.+|+||||++..+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998866
No 183
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.71 E-value=0.016 Score=48.35 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=16.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-.|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 184
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.71 E-value=0.019 Score=44.03 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.3
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
++|.|..|+|||||++.+.
T Consensus 18 v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh
Confidence 4799999999999999975
No 185
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.70 E-value=0.043 Score=47.13 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+-|+||||+++.+.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 186
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.019 Score=48.73 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-|.|.+|+||||+|+.+-+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999874
No 187
>PRK09087 hypothetical protein; Validated
Probab=94.67 E-value=0.019 Score=50.83 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
+.|||..|+|||+|++.++++
T Consensus 47 l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999998874
No 188
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.67 E-value=0.024 Score=46.78 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=46.9
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHH---HHHHHHHHHc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEAT---VEKYLEQLIN 78 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~---~~~~~~~L~~ 78 (391)
=+.|+.|.||||||+.+.. .+...=..+.++. .+.+- ......-||-.++-++. ....-..|.+
T Consensus 6 wltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD------gD~lR-----~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~ 72 (156)
T PF01583_consen 6 WLTGLSGSGKTTLARALER--RLFARGIKVYLLD------GDNLR-----HGLNADLGFSKEDREENIRRIAEVAKLLAD 72 (156)
T ss_dssp EEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE------HHHHC-----TTTTTT--SSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec------Ccchh-----hccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999987 4544433444433 22210 00111223322111111 2223455666
Q ss_pred CccEEeeeccCCCceeeEEcCcchHHHHHhhccccCcee
Q 041097 79 GGFVGAGKRSDIGRINTCSIPGRCSPALLTVVFEGEFLI 117 (391)
Q Consensus 79 k~~l~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~~~~ 117 (391)
.+.+.+.. .+.+-.-.|+.+.....+..|..
T Consensus 73 ~G~ivIva--------~isp~~~~R~~~R~~~~~~~f~e 103 (156)
T PF01583_consen 73 QGIIVIVA--------FISPYREDREWARELIPNERFIE 103 (156)
T ss_dssp TTSEEEEE------------SHHHHHHHHHHHHTTEEEE
T ss_pred CCCeEEEe--------eccCchHHHHHHHHhCCcCceEE
Confidence 66665544 22344556777776666544554
No 189
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.67 E-value=0.021 Score=48.84 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||++.+.++
T Consensus 22 i~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 22 ILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 190
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.66 E-value=0.018 Score=45.08 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.+.|.||+||||++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 191
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.66 E-value=0.019 Score=51.63 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 192
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.64 E-value=0.025 Score=46.86 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 193
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.63 E-value=0.024 Score=46.77 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999998764
No 194
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.02 Score=47.16 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+||||+.+.+-.
T Consensus 7 vvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 7 VVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred EEEEcCCCCChHHHHHHHHH
Confidence 46999999999999988665
No 195
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.62 E-value=0.044 Score=47.44 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|.|||||++.+..
T Consensus 4 i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 4 IGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 196
>PRK08356 hypothetical protein; Provisional
Probab=94.62 E-value=0.02 Score=49.47 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=17.0
Q ss_pred CcEEcCCCCcHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEA 18 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~v 18 (391)
|+|+|+.|+||||+|+.+
T Consensus 8 i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 579999999999999998
No 197
>PRK04182 cytidylate kinase; Provisional
Probab=94.59 E-value=0.02 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+.+
T Consensus 3 I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999886
No 198
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.019 Score=30.25 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=10.4
Q ss_pred ccEEEcCCCccccCCcccC
Q 041097 181 LRVLDLGSLVLIRYPSGIE 199 (391)
Q Consensus 181 L~~L~l~~~~l~~~p~~i~ 199 (391)
|++|++++|.+..+|+.++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555444
No 199
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.57 E-value=0.025 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999997654
No 200
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.53 E-value=0.023 Score=46.77 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|..|+||||+|+.+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999765
No 201
>PRK01184 hypothetical protein; Provisional
Probab=94.53 E-value=0.021 Score=48.67 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=15.5
Q ss_pred CcEEcCCCCcHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAE 17 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~ 17 (391)
|+|+|+.|+||||+|+.
T Consensus 4 i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999999984
No 202
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.53 E-value=0.018 Score=52.16 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=17.2
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|.+|+||||+|+.+.+
T Consensus 46 ll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGK 64 (261)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999875
No 203
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.03 Score=47.09 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=19.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
+.|.|+.|+||+||++.++++.
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999853
No 204
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.51 E-value=0.022 Score=48.91 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 205
>PRK08727 hypothetical protein; Validated
Probab=94.51 E-value=0.024 Score=50.49 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=24.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|.|||..|+|||.|++++++. +........|++..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQ 78 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHH
Confidence 468999999999999999873 33333345565543
No 206
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.49 E-value=0.022 Score=47.76 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+-+
T Consensus 3 I~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 207
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.47 E-value=0.017 Score=47.23 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=28.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFV 53 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~ 53 (391)
|.|-|.+|+||||+|+.+.+...++. +....++++++...
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~ 42 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARER 42 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHc
Confidence 57899999999999999887433332 23446666666544
No 208
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.44 E-value=0.029 Score=46.72 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+..+..
T Consensus 6 v~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 57999999999999999754
No 209
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.43 E-value=0.022 Score=52.21 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=16.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-|||||||+|-.+-.
T Consensus 4 i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57899999999998877543
No 210
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.41 E-value=0.021 Score=53.02 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.8
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|+.|+||||||+.+.+
T Consensus 34 ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 34 LLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 211
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.41 E-value=0.026 Score=47.09 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999875
No 212
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.38 E-value=0.036 Score=52.11 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.2
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-|+|+.|+||||+|+.+.+.
T Consensus 55 ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 55 LLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred EEECCCCccHHHHHHHHHHH
Confidence 48999999999999999883
No 213
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.37 E-value=0.022 Score=48.37 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.2
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-|+|.+|+|||||++.++..
T Consensus 28 ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 28 LLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp EE-B-TTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 58999999999999998874
No 214
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.37 E-value=0.024 Score=49.79 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|+|||||++.+..
T Consensus 33 ~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EEEEcCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 215
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.025 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=20.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF 28 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F 28 (391)
=.+|++|.||||||.-+.| ++...+
T Consensus 56 Ll~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 56 LLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred EeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 3689999999999999998 444433
No 216
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.36 E-value=0.029 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-++|..|+|||||+|.+-..
T Consensus 4 imliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999998764
No 217
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.025 Score=49.86 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||.+.+.-
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999864
No 218
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.33 E-value=0.033 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 219
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.31 E-value=0.022 Score=50.44 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999865
No 220
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.30 E-value=0.024 Score=48.90 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 6 i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877
No 221
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.28 E-value=0.027 Score=54.71 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=18.1
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-++|.+|+||||+|+.+.+.
T Consensus 40 lL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 40 ILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999883
No 222
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.27 E-value=0.027 Score=47.73 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.||||+++.+..
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987
No 223
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=94.27 E-value=0.029 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.++
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 579999999999999998775
No 224
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.25 E-value=0.03 Score=46.38 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=19.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|.+|+|||||++.+.++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5799999999999999987753
No 225
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.24 E-value=0.03 Score=45.29 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 579999999999999998764
No 226
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.24 E-value=0.024 Score=50.18 Aligned_cols=21 Identities=5% Similarity=0.128 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-|+|..|+|||+||+.+++.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999873
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.24 E-value=0.055 Score=48.33 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=23.2
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQE 36 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~v 36 (391)
-++|.+|+|||+||.++.+. +...=..++++++
T Consensus 103 ~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 103 IFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 47999999999999999883 3322234455443
No 228
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.21 E-value=0.034 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999887653
No 229
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.17 E-value=0.063 Score=47.42 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=30.3
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQIL 46 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~ 46 (391)
-|+|.+|+||||+|.++..+ ....-..++||... .++.+++.
T Consensus 27 ~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 27 QIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 58999999999999998753 22223577888766 66666643
No 230
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.17 E-value=0.032 Score=46.31 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+..+.+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999998754
No 231
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.16 E-value=0.029 Score=49.04 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 232
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.14 E-value=0.029 Score=49.22 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 233
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.14 E-value=0.029 Score=48.91 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+||.|+||+|.|+.+-.
T Consensus 3 I~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 3 IAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEeCCCCCCHHHHHHHHHh
Confidence 79999999999999999743
No 234
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.13 E-value=0.03 Score=51.05 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+++.+..
T Consensus 2 igI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999875
No 235
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.12 E-value=0.033 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.++
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999988765
No 236
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.12 E-value=0.032 Score=46.33 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999887654
No 237
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.11 E-value=0.033 Score=46.34 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.++
T Consensus 5 i~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 238
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.11 E-value=0.028 Score=51.28 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-|||||||+|-.+-.
T Consensus 4 iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57889999999998887643
No 239
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.031 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 240
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.08 E-value=0.03 Score=49.06 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=16.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-||+||||.+-.+-.
T Consensus 3 iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred EEEECCCcCcHHHHHHHHHH
Confidence 67999999999997777543
No 241
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.08 E-value=0.026 Score=54.29 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.||||||+++..
T Consensus 222 IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 242
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.08 E-value=0.033 Score=44.63 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.+.|.-|+||||++|.+...
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999873
No 243
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.06 E-value=0.029 Score=51.07 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.0
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|+|.|-|||||||++-.+-
T Consensus 3 i~~~gKGGVGKTT~~~nLA 21 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLS 21 (268)
T ss_pred EEEEcCCcCcHHHHHHHHH
Confidence 6788999999999777753
No 244
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.05 E-value=0.032 Score=48.37 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=19.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|+|+|.+|+|||||.+.+.++.
T Consensus 44 I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 44 VALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred EEEECCCCCCHHHHHHHHhcch
Confidence 6899999999999999988753
No 245
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.05 E-value=0.031 Score=46.56 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 67999999999999998754
No 246
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=94.05 E-value=0.029 Score=45.65 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=17.3
Q ss_pred EEcCCCCcHHHHHHHHhCC
Q 041097 3 VLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~ 21 (391)
|+|.+|+|||||++.+++.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 6899999999999999874
No 247
>PLN02348 phosphoribulokinase
Probab=94.05 E-value=0.027 Score=53.34 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|-.|+||||+|+.+.+
T Consensus 52 IGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 52 IGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999876
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.04 E-value=0.037 Score=51.88 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=19.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|||..|+|||.+|+++++.
T Consensus 151 llL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 589999999999999999983
No 249
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.04 E-value=0.039 Score=45.99 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||.+.+.++
T Consensus 4 v~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999987653
No 250
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=94.03 E-value=0.032 Score=46.33 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.++|.+|+|||||++.+..
T Consensus 3 v~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999743
No 251
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.02 E-value=0.032 Score=47.86 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 252
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.00 E-value=0.033 Score=47.18 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||.+.+..
T Consensus 24 ~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 58999999999999999853
No 253
>PRK10536 hypothetical protein; Provisional
Probab=93.98 E-value=0.12 Score=46.19 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|.|.+|.|||+||.++..+
T Consensus 77 V~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 77 IFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999997653
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.031 Score=53.00 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+++|.+|+||||++.++..
T Consensus 244 I~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 58999999999999998865
No 255
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.98 E-value=0.02 Score=50.88 Aligned_cols=45 Identities=27% Similarity=0.138 Sum_probs=30.3
Q ss_pred hHHhhccCCcccEEEcCCCccc-cCCc----ccCCCCcccEEEccCCCCC
Q 041097 171 CEKICKMFKFLRVLDLGSLVLI-RYPS----GIENLFLLRYLKLNIPSLK 215 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~-~~p~----~i~~l~~L~~L~l~~~~i~ 215 (391)
+.+.+-+++.|+..+|+.|.+. ..|+ -|+.-..|.+|.+.+|.+.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3456677788888888888765 3443 3456667777777777654
No 256
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.97 E-value=0.033 Score=48.08 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|+.|+||||+|+.+.+
T Consensus 4 i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999764
No 257
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.97 E-value=0.037 Score=46.37 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998653
No 258
>PRK14527 adenylate kinase; Provisional
Probab=93.96 E-value=0.032 Score=47.92 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+||||+|+.+.+
T Consensus 9 i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 259
>PRK02496 adk adenylate kinase; Provisional
Probab=93.96 E-value=0.033 Score=47.52 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999865
No 260
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.95 E-value=0.034 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+.++|++|+||||+++.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999875
No 261
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.95 E-value=0.036 Score=46.25 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 569999999999999998765
No 262
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.95 E-value=0.033 Score=49.79 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|+|||||.|.++.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999987
No 263
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.034 Score=48.98 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 264
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.93 E-value=0.046 Score=52.27 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=22.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY 27 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~ 27 (391)
|+|+|..|+|||||+..+.. .++..
T Consensus 8 i~i~G~~gsGKTTl~~~l~~--~l~~~ 32 (369)
T PRK14490 8 IAFCGYSGSGKTTLITALVR--RLSER 32 (369)
T ss_pred EEEEeCCCCCHHHHHHHHHH--HHhhC
Confidence 68999999999999999988 56666
No 265
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.93 E-value=0.034 Score=47.94 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999873
No 266
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=93.92 E-value=0.042 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+....+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999977654
No 267
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.92 E-value=0.15 Score=42.62 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=56.0
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHH---HHHHHHHHHcC
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEAT---VEKYLEQLING 79 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~---~~~~~~~L~~k 79 (391)
..|+.|.||||+|.+++. .+... .+.+++- |-+.+=. -..-.-||..++-.+. ...+-..+.+.
T Consensus 28 ~TGLSGsGKSTiA~ale~--~L~~~-G~~~y~L-----DGDnvR~-----gL~~dLgFs~edR~eniRRvaevAkll~da 94 (197)
T COG0529 28 FTGLSGSGKSTIANALEE--KLFAK-GYHVYLL-----DGDNVRH-----GLNRDLGFSREDRIENIRRVAEVAKLLADA 94 (197)
T ss_pred eecCCCCCHHHHHHHHHH--HHHHc-CCeEEEe-----cChhHhh-----cccCCCCCChHHHHHHHHHHHHHHHHHHHC
Confidence 359999999999999987 22211 1333332 2222111 1112345544331111 22344567777
Q ss_pred ccEEeeeccCCCceeeEEcCcchHHHHHhhccccCceeecccCC
Q 041097 80 GFVGAGKRSDIGRINTCSIPGRCSPALLTVVFEGEFLISPIMDQ 123 (391)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~~~~~~~~~~ 123 (391)
+++..+. ....+.-.|+++.....+..|.. ++-+.
T Consensus 95 G~iviva--------~ISP~r~~R~~aR~~~~~~~FiE-VyV~~ 129 (197)
T COG0529 95 GLIVIVA--------FISPYREDRQMARELLGEGEFIE-VYVDT 129 (197)
T ss_pred CeEEEEE--------eeCccHHHHHHHHHHhCcCceEE-EEeCC
Confidence 7776554 34466677889988888777776 55444
No 268
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.034 Score=49.52 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 269
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.92 E-value=0.034 Score=48.66 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 31 ~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 270
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=93.91 E-value=0.042 Score=45.62 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=17.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+|||||.+....
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999987543
No 271
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.90 E-value=0.039 Score=45.46 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+++|..|+|||||+..+...
T Consensus 6 i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 6 VAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998663
No 272
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.90 E-value=0.032 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+-|+||||+++.+.+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~ 21 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAE 21 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 273
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.88 E-value=0.042 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||+..+.++
T Consensus 4 i~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999887653
No 274
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.88 E-value=0.035 Score=48.37 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||++.+.+
T Consensus 16 ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 16 VVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999876
No 275
>PRK15453 phosphoribulokinase; Provisional
Probab=93.88 E-value=0.035 Score=50.26 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|-.|+||||+|+.+.+
T Consensus 8 I~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 8 IAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999998764
No 276
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.035 Score=48.55 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 277
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.86 E-value=0.035 Score=48.80 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 278
>PLN02200 adenylate kinase family protein
Probab=93.84 E-value=0.035 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.121 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 46 i~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999765
No 279
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=93.84 E-value=0.037 Score=47.53 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=19.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||.+.+.++
T Consensus 27 v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 27 IAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.84 E-value=0.052 Score=46.95 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|.||||+++.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999998765
No 281
>PRK14532 adenylate kinase; Provisional
Probab=93.84 E-value=0.036 Score=47.48 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999875
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.84 E-value=0.036 Score=46.99 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred EEEECCCCChHHHHHHHHHc
Confidence 58999999999999999876
No 283
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.84 E-value=0.034 Score=52.56 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=26.6
Q ss_pred CcEEcCCCCcHH-HHHHHHhCCccccccccEEEEEEcCCCcChHH
Q 041097 1 MAVLDSIGLDKT-AFAAEAYSSNYVKHYFDCHAWVQESLPYDADQ 44 (391)
Q Consensus 1 igI~GmgGvGKT-TLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~ 44 (391)
|..||+.||||| ||||...--.. ...=..+++++.+ +|.+..
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtD-tYRIGA 248 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTD-TYRIGA 248 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEec-cchhhH
Confidence 468999999996 89988754211 1222467777765 345444
No 284
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.83 E-value=0.035 Score=46.34 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|..+||-|+||||+.|.+.+
T Consensus 5 IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHH
Confidence 45789999999999999876
No 285
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.037 Score=48.34 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 286
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.82 E-value=0.058 Score=45.99 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=26.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~ 35 (391)
|.++|..|+|||||++.+.. ..+..|..++.-+
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999988 5667776555444
No 287
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.82 E-value=0.035 Score=57.45 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.2
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF 28 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F 28 (391)
-+||++|+||||+|+.+++. .+..|
T Consensus 56 LL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 56 ILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred EEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 37999999999999999973 44444
No 288
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.82 E-value=0.035 Score=51.17 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|-|||||||.+-.+-.
T Consensus 3 ia~~gKGGVGKTTta~nLA~ 22 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISI 22 (290)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57899999999998887543
No 289
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.037 Score=48.36 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 28 ~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 290
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.79 E-value=0.037 Score=48.11 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 291
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.79 E-value=0.035 Score=50.88 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+||||++..+..
T Consensus 197 i~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999988765
No 292
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.79 E-value=0.038 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998653
No 293
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.78 E-value=0.088 Score=44.89 Aligned_cols=83 Identities=24% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc-ccCCCcccccceeeeccccccccch----HhhcCCCCC
Q 041097 283 PSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER-TMGIRAMPKLECLIINPYAHLKRIH----EQLWCLKSL 357 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~lp----~~~~~l~~L 357 (391)
+.|.+|.+.+|.+....+.....+|+|..|.+..|+..... .-+.-++|+|++|.+-+++ .+..+ -.+..+|+|
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcc
Confidence 55555555555554433222233455555555544332211 1112345555555555443 11111 123456666
Q ss_pred CEEEeeCCc
Q 041097 358 NKLELWWPE 366 (391)
Q Consensus 358 ~~L~l~~~~ 366 (391)
+.|+..+..
T Consensus 143 ~~LDF~kVt 151 (233)
T KOG1644|consen 143 RTLDFQKVT 151 (233)
T ss_pred eEeehhhhh
Confidence 666666554
No 294
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.78 E-value=0.083 Score=46.60 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=31.5
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc------cEEEEEEcCCCcChHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF------DCHAWVQESLPYDADQILY 47 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F------~~~~~~~vs~~~~~~~i~~ 47 (391)
.|+|.+|+||||||..+.-+. ...- ..++|+.-...|+.+++.+
T Consensus 23 ~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 23 EIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred EEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 589999999999999875421 1122 4667887777788776544
No 295
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.77 E-value=0.038 Score=48.37 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 296
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.76 E-value=0.084 Score=45.36 Aligned_cols=20 Identities=20% Similarity=0.048 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|..|+||||+++.+.+
T Consensus 6 IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999886
No 297
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.76 E-value=0.038 Score=48.90 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999976
No 298
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.76 E-value=0.037 Score=50.74 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|.|.|+.|+||||+++.+-
T Consensus 9 i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 9 VIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5799999999999999984
No 299
>PTZ00202 tuzin; Provisional
Probab=93.75 E-value=0.27 Score=47.42 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=33.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhhc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFVM 54 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~ 54 (391)
+.|.|++|+|||||++.+... +. ...+++.++ ..+++...++..+.
T Consensus 289 vvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eElLr~LL~ALG 334 (550)
T PTZ00202 289 VVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDTLRSVVKALG 334 (550)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHHHHHHHHHcC
Confidence 368999999999999998863 32 336666665 55777777776654
No 300
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.75 E-value=0.037 Score=50.33 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=23.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWV 34 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~ 34 (391)
|+|+|..|+|||||+..+.. .++..- .++.+
T Consensus 4 i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~I 34 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVD--RLSGRG-RVGTV 34 (274)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEE
Confidence 68999999999999999887 455544 34443
No 301
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.74 E-value=0.038 Score=48.38 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999999999976
No 302
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.74 E-value=0.047 Score=47.41 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|||||||++...++
T Consensus 3 vvvlG~~gVGKTSli~r~~~~ 23 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDD 23 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 578999999999999887654
No 303
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.73 E-value=0.038 Score=49.45 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 31 ~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 304
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.038 Score=49.35 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 305
>PRK08181 transposase; Validated
Probab=93.73 E-value=0.056 Score=49.07 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=23.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~ 35 (391)
|-++|..|+|||.||.++.+ ++-.....+.|++
T Consensus 109 lll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred EEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 35899999999999999876 2322333445544
No 306
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.72 E-value=0.039 Score=47.06 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|..|.||||+|+.+..
T Consensus 21 i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 21 IWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 307
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.71 E-value=0.046 Score=52.64 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|.+|+|||++|+++.+
T Consensus 169 LL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 169 LLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred EEECCCCCChHHHHHHHHH
Confidence 4799999999999999988
No 308
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.70 E-value=0.036 Score=50.40 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-|||||||++-.+..
T Consensus 4 iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHH
Confidence 57889999999998888654
No 309
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.70 E-value=0.043 Score=45.92 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||.+.+.+
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999998764
No 310
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.69 E-value=0.038 Score=52.75 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|.|||||++.+..
T Consensus 215 IGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 215 IGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999854
No 311
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=93.69 E-value=0.039 Score=47.94 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEA 18 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~v 18 (391)
|||+|..|.|||||++.+
T Consensus 3 i~~~g~~~~GKttL~~~l 20 (203)
T cd01888 3 IGTIGHVAHGKSTLVKAL 20 (203)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999987
No 312
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.68 E-value=0.05 Score=47.08 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 3 ivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999987654
No 313
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.68 E-value=0.05 Score=45.62 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+...
T Consensus 5 i~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998654
No 314
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.67 E-value=0.04 Score=48.79 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 39 ~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999999999986
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=93.67 E-value=0.035 Score=50.20 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||+||..+.+
T Consensus 105 v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999865
No 316
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.66 E-value=0.041 Score=47.84 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 317
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.64 E-value=0.042 Score=49.34 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|-.|+||||+|+.+..
T Consensus 2 IgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999998765
No 318
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.63 E-value=0.042 Score=48.04 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999865
No 319
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.041 Score=48.17 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 26 ~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 320
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.61 E-value=0.098 Score=48.89 Aligned_cols=52 Identities=8% Similarity=0.018 Sum_probs=36.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccc----cEEEEEEcCCCcChHHHHHHHHHhhcC
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYF----DCHAWVQESLPYDADQILYDIIKFVMP 55 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F----~~~~~~~vs~~~~~~~i~~~~~~~~~~ 55 (391)
|+|.+|+|||+++..+.-+...+... ..++|+.....|+.+++.+. +..+.|
T Consensus 107 i~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~ 162 (317)
T PRK04301 107 FYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGL 162 (317)
T ss_pred EECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCC
Confidence 89999999999999986532222111 37889988888998886553 333334
No 321
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.61 E-value=0.041 Score=48.99 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+.-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 322
>PRK14531 adenylate kinase; Provisional
Probab=93.60 E-value=0.042 Score=46.88 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|++|.||||+++.+..
T Consensus 5 i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999865
No 323
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=93.60 E-value=0.054 Score=45.12 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||.+.+.+.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999997664
No 324
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.58 E-value=0.042 Score=48.23 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|++|+||||+|+.+..
T Consensus 3 I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999765
No 325
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.042 Score=49.06 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 326
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.57 E-value=0.079 Score=46.52 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=26.3
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcC
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYD 41 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~ 41 (391)
.|+|.+|+||||+|..+... ....=..++|+.....++
T Consensus 23 ~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 23 QVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 58999999999999997652 211223667776655554
No 327
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.57 E-value=0.042 Score=48.57 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 34 LGLVGESGSGKSTLARAILG 53 (228)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 328
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.56 E-value=0.043 Score=47.98 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|.|||||++.+..
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 329
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.56 E-value=0.043 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 38 ~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 330
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.56 E-value=0.0096 Score=47.48 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=36.7
Q ss_pred cCCcccEEEcCCCccccCCcccCCC-CcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchhH
Q 041097 177 MFKFLRVLDLGSLVLIRYPSGIENL-FLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSK 249 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~~~p~~i~~l-~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~ 249 (391)
+...|...++++|.+..+|+.+... +.+..|++.+|.++.+|.++- .++++.|.+. ..|.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-------------~~p~ 117 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-------------AEPR 117 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-------------cchH
Confidence 3344444455555555555444322 244455555555555554433 4444444444 4555
Q ss_pred HhcCCCCCCEEEecC
Q 041097 250 SLCRLSCLESLKLAN 264 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~ 264 (391)
-+.+|.+|-.|+..+
T Consensus 118 vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPE 132 (177)
T ss_pred HHHHHHhHHHhcCCC
Confidence 555566666665544
No 331
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.043 Score=48.27 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 332
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=93.55 E-value=0.048 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 333
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.54 E-value=0.045 Score=45.47 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 4 i~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999886
No 334
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.54 E-value=0.036 Score=48.81 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||++.+.+
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCcCCHHHHHHHHHH
Confidence 46899999999999999887
No 335
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.54 E-value=0.043 Score=48.27 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 336
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.54 E-value=0.044 Score=48.47 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999873
No 337
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=93.53 E-value=0.055 Score=45.38 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999887554
No 338
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.52 E-value=0.042 Score=48.15 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.6
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|||.+|+||||+|+.+-+
T Consensus 16 liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 16 LIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEECCCCCCHHHHHHhcCC
Confidence 4899999999999998743
No 339
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.52 E-value=0.043 Score=48.67 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|.|..|.|||||++.+.-.
T Consensus 15 ~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 15 LALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999873
No 340
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=93.51 E-value=0.057 Score=44.84 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.+.
T Consensus 3 i~vvG~~~~GKTsli~~~~~~ 23 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDN 23 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999887553
No 341
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.51 E-value=0.042 Score=48.98 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|||-||+||+|.+..+--
T Consensus 3 IAiYGKGGIGKST~~~Nlsa 22 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSA 22 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCcccChhhhHHHH
Confidence 68999999999999988643
No 342
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.51 E-value=0.044 Score=47.60 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999987
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.51 E-value=0.044 Score=48.01 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 16 ~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 344
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.044 Score=49.00 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|.|||||++.+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 345
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.044 Score=49.48 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 346
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=93.50 E-value=0.046 Score=47.20 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=17.3
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|||+|..|+||||+++.+-
T Consensus 2 i~itG~~gsGKst~~~~l~ 20 (196)
T PRK14732 2 IGITGMIGGGKSTALKILE 20 (196)
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 6999999999999999754
No 347
>PTZ00369 Ras-like protein; Provisional
Probab=93.48 E-value=0.057 Score=46.24 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||+..+.++
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999987664
No 348
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=93.47 E-value=0.046 Score=47.41 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+||||+++.+..
T Consensus 9 IglTG~iGsGKStv~~~l~~ 28 (204)
T PRK14733 9 IGITGGIASGKSTATRILKE 28 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999764
No 349
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=93.46 E-value=0.05 Score=47.03 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999987653
No 350
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=93.45 E-value=0.05 Score=46.15 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=19.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|+|+|..|+|||||...+..+.
T Consensus 21 i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 21 IAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998753
No 351
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.44 E-value=0.052 Score=45.06 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||.+.+.++
T Consensus 6 i~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998754
No 352
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.43 E-value=0.046 Score=48.49 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 14 ~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 353
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.42 E-value=0.047 Score=48.52 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 354
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.40 E-value=0.054 Score=44.67 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 355
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.40 E-value=0.048 Score=46.64 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||++.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999987
No 356
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.39 E-value=0.048 Score=46.67 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.||||+++.+..
T Consensus 28 i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999875
No 357
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.39 E-value=0.051 Score=46.99 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||+++++.
T Consensus 25 ~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999873
No 358
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.38 E-value=0.05 Score=45.94 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 31 ~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999986
No 359
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.35 E-value=0.063 Score=45.11 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.++
T Consensus 3 i~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998765
No 360
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.35 E-value=0.049 Score=48.55 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|+.|.|||||.|.+..
T Consensus 33 ~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 361
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=93.34 E-value=0.072 Score=44.66 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||...+.++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999987653
No 362
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.34 E-value=0.048 Score=47.99 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999876
No 363
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=93.33 E-value=0.054 Score=46.41 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.++
T Consensus 2 i~ivG~~~vGKTsli~~l~~~ 22 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLN 22 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999997653
No 364
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.33 E-value=0.049 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|+|||||++.+...
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999773
No 365
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.33 E-value=0.049 Score=47.81 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 366
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=93.32 E-value=0.064 Score=44.28 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 367
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.32 E-value=0.05 Score=47.11 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 30 ~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 368
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.32 E-value=0.048 Score=48.53 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999999999986
No 369
>PRK08116 hypothetical protein; Validated
Probab=93.32 E-value=0.05 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.053 Sum_probs=23.4
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEE
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQ 35 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~ 35 (391)
-+||-.|+|||.||.++++ ++...-..+++++
T Consensus 118 ~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~ 149 (268)
T PRK08116 118 LLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN 149 (268)
T ss_pred EEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 4899999999999999998 3433323455544
No 370
>PRK05642 DNA replication initiation factor; Validated
Probab=93.32 E-value=0.061 Score=47.87 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=23.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQE 36 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~v 36 (391)
-|||..|+|||.|++++.+. +...=..+.|++.
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred EEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 48999999999999999872 2221134556554
No 371
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.32 E-value=0.051 Score=46.09 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|.|..|.|||||++.+.-.
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999873
No 372
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.31 E-value=0.056 Score=44.59 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||...+...
T Consensus 3 i~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999997654
No 373
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.31 E-value=0.049 Score=48.51 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 374
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.31 E-value=0.047 Score=49.64 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.1
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|+|.|-||+||||.|-.+-
T Consensus 3 i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 6789999999999877754
No 375
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=93.30 E-value=0.053 Score=46.45 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 376
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=93.30 E-value=0.062 Score=45.26 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|-+|+|||||++....
T Consensus 5 i~vvG~~~vGKTsL~~~~~~ 24 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFIS 24 (172)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 57999999999999988654
No 377
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.28 E-value=0.047 Score=50.78 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+++||.|+||||+++.+..
T Consensus 136 I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 136 IALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 378
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=93.28 E-value=0.064 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 7 i~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998664
No 379
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.27 E-value=0.052 Score=45.25 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||.+.+..
T Consensus 10 v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999764
No 380
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.26 E-value=0.054 Score=45.30 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 7 i~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 381
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.26 E-value=0.046 Score=47.38 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+-|+||||+++.+.+
T Consensus 6 I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 382
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.26 E-value=0.045 Score=51.38 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++++|..|+||||||+.+.+
T Consensus 81 l~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999877
No 383
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=93.25 E-value=0.059 Score=44.88 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|.+|+|||||+..+.++.
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999987653
No 384
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.25 E-value=0.051 Score=48.61 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999873
No 385
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.054 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999987
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.053 Score=46.67 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 36 ~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 387
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.23 E-value=0.059 Score=46.03 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~vGKSsli~~~~~~ 23 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTED 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 388
>PRK14526 adenylate kinase; Provisional
Probab=93.22 E-value=0.053 Score=47.41 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999765
No 389
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.22 E-value=0.049 Score=49.72 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.9
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|+|+|-|||||||.+-.+-
T Consensus 4 iav~~KGGVGKTT~~~nLA 22 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTV 22 (274)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 5788999999999877653
No 390
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.21 E-value=0.054 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 29 LQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999873
No 391
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.20 E-value=0.05 Score=54.22 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|.||||||+.+..
T Consensus 68 IGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 68 VGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 79999999999999999876
No 392
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.19 E-value=0.053 Score=48.11 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 393
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.19 E-value=0.06 Score=45.84 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+..+
T Consensus 20 v~lvG~~~vGKTsli~~~~~~ 40 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLG 40 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 578999999999999998553
No 394
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.19 E-value=0.056 Score=44.15 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 479999999999999999773
No 395
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.19 E-value=0.054 Score=47.43 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|.|..|.|||||++.++-.
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 27 VAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999873
No 396
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.19 E-value=0.056 Score=45.33 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+.--
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 489999999999999999773
No 397
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=93.18 E-value=0.064 Score=45.81 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||.+.+..
T Consensus 4 i~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999864
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.17 E-value=0.052 Score=50.59 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=17.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+++|..|+||||++.++..
T Consensus 117 i~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999998865
No 399
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.17 E-value=0.051 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=20.7
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF 28 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F 28 (391)
-++|..|+|||++|+++.+ +....|
T Consensus 221 LL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 221 ILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred EEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 4799999999999999998 444444
No 400
>PRK06526 transposase; Provisional
Probab=93.17 E-value=0.051 Score=48.94 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++|.+|+|||+||+.+.+
T Consensus 101 lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred EEEEeCCCCchHHHHHHHHH
Confidence 35899999999999999876
No 401
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=93.16 E-value=0.06 Score=44.82 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 3 i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 579999999999999998774
No 402
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=93.16 E-value=0.056 Score=44.63 Aligned_cols=20 Identities=15% Similarity=0.022 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+..+..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~ 21 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQL 21 (158)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 57999999999999999854
No 403
>PRK04213 GTP-binding protein; Provisional
Probab=93.16 E-value=0.061 Score=46.47 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||...+.++
T Consensus 12 i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 12 IVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998764
No 404
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.15 E-value=0.05 Score=49.69 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-|||||||.|-.+-.
T Consensus 5 Iav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 5 IAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 56789999999998887543
No 405
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.13 E-value=0.055 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999873
No 406
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.13 E-value=0.12 Score=46.74 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=35.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHhhcCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPS 56 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~ 56 (391)
+-|+|-+|+|||++|.+.-. +.......|.|+..+. +.+.+.+.... +.|.
T Consensus 26 ~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~~~~~-~g~d 76 (260)
T COG0467 26 VLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLENARS-FGWD 76 (260)
T ss_pred EEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHHHHHH-cCCC
Confidence 35899999999999998755 2334478899998874 45555554433 5553
No 407
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.12 E-value=0.06 Score=45.88 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+..+
T Consensus 20 i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 20 ILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 408
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.12 E-value=0.061 Score=44.57 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+++|+.|+||+||...+..+
T Consensus 105 v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 105 VGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred EEEEeCCCCChHHHHHHHhcC
Confidence 478999999999999998864
No 409
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=93.11 E-value=0.058 Score=44.64 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-+|+|||||+..+.+
T Consensus 5 i~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 57999999999999988654
No 410
>PF13479 AAA_24: AAA domain
Probab=93.11 E-value=0.045 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=16.5
Q ss_pred CcEEcCCCCcHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEA 18 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~v 18 (391)
|.|||-+|+||||+|..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 469999999999999996
No 411
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.11 E-value=0.057 Score=47.44 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+..
T Consensus 5 i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 412
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.055 Score=48.72 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 35 ~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 35 TALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999974
No 413
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.10 E-value=0.054 Score=48.42 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+|++|-.|+||||++|.+.-
T Consensus 42 ~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 42 LGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred EEEEecCCCCHHHHHHHHHc
Confidence 58999999999999999986
No 414
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.10 E-value=0.056 Score=47.68 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 37 ~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 415
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.09 E-value=0.056 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=16.9
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 041097 3 VLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~ 20 (391)
|.|.+|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 789999999999999886
No 416
>PRK07429 phosphoribulokinase; Provisional
Probab=93.09 E-value=0.054 Score=50.63 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+..
T Consensus 11 IgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 11 LGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999999876
No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.09 E-value=0.059 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|.|||||.+.+.-
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 29 HALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999987
No 418
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.08 E-value=0.056 Score=48.61 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
+||+|..|.|||||++.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 32 VAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5899999999999999985
No 419
>CHL00181 cbbX CbbX; Provisional
Probab=93.08 E-value=0.05 Score=49.98 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=17.1
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|.+|+||||+|+.+.+
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3689999999999999965
No 420
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.07 E-value=0.057 Score=47.19 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 421
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=93.07 E-value=0.07 Score=45.41 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||.+.+.++
T Consensus 3 i~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998765
No 422
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.07 E-value=0.05 Score=55.50 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+||||+|+.+++.
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 423
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.06 E-value=0.058 Score=45.94 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999987
No 424
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.055 Score=49.15 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 40 ~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999999999986
No 425
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.06 E-value=0.077 Score=45.29 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|+.|+||+|+++.+...
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999998873
No 426
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.06 E-value=0.057 Score=48.82 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 41 ~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 427
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.057 Score=48.29 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 428
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.04 E-value=0.056 Score=50.53 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|.+|+|||||+..+..
T Consensus 59 igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 59 IGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999998755
No 429
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.04 E-value=0.059 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.1
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999873
No 430
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.03 E-value=0.059 Score=46.96 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999986
No 431
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.057 Score=48.53 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 32 TALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 432
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.02 E-value=0.058 Score=47.01 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+++|..|+|||||.+.+..
T Consensus 25 i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 25 LNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999876
No 433
>PRK10908 cell division protein FtsE; Provisional
Probab=93.01 E-value=0.059 Score=47.49 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 434
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.01 E-value=0.061 Score=44.72 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||+..+.+.
T Consensus 5 i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCc
Confidence 689999999999999998764
No 435
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.01 E-value=0.061 Score=41.01 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=15.8
Q ss_pred CcEEc-CCCCcHHHHHHHHhC
Q 041097 1 MAVLD-SIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~G-mgGvGKTTLa~~vy~ 20 (391)
|+|+| -||+||||+|..+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~ 22 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAA 22 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHH
Confidence 45666 799999999888654
No 436
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.01 E-value=0.15 Score=47.49 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=33.7
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccc----cEEEEEEcCCCcChHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYF----DCHAWVQESLPYDADQILY 47 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F----~~~~~~~vs~~~~~~~i~~ 47 (391)
-|+|.+|+||||++..++-+....... ..++|+.....|+.+++.+
T Consensus 99 ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 99 EVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 489999999999999986543332111 2788998888888887654
No 437
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.99 E-value=0.058 Score=49.15 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=22.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|+++|.+|+||||.+.++.. .+...=..+.++..+
T Consensus 75 i~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D 109 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD 109 (272)
T ss_pred EEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC
Confidence 56899999999998877754 233222345555543
No 438
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.99 E-value=0.062 Score=49.84 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=14.5
Q ss_pred cEEcCCCCcHHHHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEA 18 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~v 18 (391)
-+.|-|||||||+|-+.
T Consensus 5 ~~~GKGGVGKTT~aaA~ 21 (305)
T PF02374_consen 5 FFGGKGGVGKTTVAAAL 21 (305)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHH
Confidence 37899999999999664
No 439
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=92.99 E-value=0.076 Score=44.85 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||+..+.++
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~ 24 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTN 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999997654
No 440
>PRK14528 adenylate kinase; Provisional
Probab=92.99 E-value=0.06 Score=46.08 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|.+|+||||+|+.+..
T Consensus 4 i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999865
No 441
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.98 E-value=0.06 Score=48.00 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 50 ~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 50 VGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 442
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.063 Score=45.23 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 31 ~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 31 VAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 48999999999999999987
No 443
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.96 E-value=0.12 Score=46.90 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=25.8
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQIL 46 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~ 46 (391)
-++|.+|+||||+|+.+.+ .... ....++.+.+.+..+++
T Consensus 25 LL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 25 HLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred EEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 4789999999999999875 2222 23344444445555544
No 444
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.94 E-value=0.061 Score=48.46 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 33 ~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 445
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=92.94 E-value=0.063 Score=47.00 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.6
Q ss_pred CcEEcCCCCcHHHHHH-HHhC
Q 041097 1 MAVLDSIGLDKTAFAA-EAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~-~vy~ 20 (391)
|+|+|.+|+|||||+. .+..
T Consensus 12 v~liG~~g~GKTtLi~~~~~~ 32 (215)
T PTZ00132 12 LILVGDGGVGKTTFVKRHLTG 32 (215)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999995 5443
No 446
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.06 Score=48.11 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999977
No 447
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=92.92 E-value=0.079 Score=44.47 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-.|+|||||++.+.++
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 448
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.92 E-value=0.061 Score=48.33 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 449
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=92.91 E-value=0.061 Score=48.29 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999975
No 450
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=92.91 E-value=0.067 Score=44.63 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 579999999999999998664
No 451
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.90 E-value=0.14 Score=46.22 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=34.9
Q ss_pred EEcCCCCcHHHHHHHHhCCcccccc---c-cEEEEEEcCCCcChHHHHHHHHH
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHY---F-DCHAWVQESLPYDADQILYDIIK 51 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~---F-~~~~~~~vs~~~~~~~i~~~~~~ 51 (391)
|+|.+|+|||.|+..++-+.++... . ..++|+.-...|+.+++.+ +.+
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~ 94 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAE 94 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhh
Confidence 8999999999999877644344322 2 3789999888999999765 443
No 452
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.062 Score=48.04 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 32 YTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 453
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.89 E-value=0.11 Score=48.99 Aligned_cols=54 Identities=6% Similarity=0.030 Sum_probs=38.2
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccc----cEEEEEEcCCCcChHHHHHHHHHhhcCCC
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYF----DCHAWVQESLPYDADQILYDIIKFVMPSP 57 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F----~~~~~~~vs~~~~~~~i~~~~~~~~~~~~ 57 (391)
|+|.+|+|||+|+..++-+..+.... ..++|+.-...|+.+++.+ ++..+.|..
T Consensus 128 i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~~~~~ 185 (342)
T PLN03186 128 IYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERFGLNG 185 (342)
T ss_pred EECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHcCCCh
Confidence 89999999999998877533332221 2789999888899998654 455444433
No 454
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.061 Score=48.51 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 455
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.86 E-value=0.061 Score=49.84 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|.+|+|||||+..+..
T Consensus 37 i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 37 VGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999765
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.85 E-value=0.083 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||+..+.+
T Consensus 107 v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 107 LNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999887
No 457
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.85 E-value=0.069 Score=44.87 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+...
T Consensus 17 v~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 17 ILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHccC
Confidence 568999999999999997653
No 458
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.85 E-value=0.061 Score=46.41 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=36.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHH--HHHHHHhhcCCC-CC-CCCCChHHHHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQI--LYDIIKFVMPSP-EG-FIPDNNEATVEKYLEQL 76 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i--~~~~~~~~~~~~-eg-~~~~~~~~~~~~~~~~L 76 (391)
|.++|..|+||||.+-++.. +.+..=..+++++.+ .|..... ++....... ++ .. ....+..+.+.+.++..
T Consensus 4 i~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D-~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISAD-TYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEES-TSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHH--HHhhccccceeecCC-CCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHH
Confidence 46899999999855444433 233333356666654 3444432 122222221 11 00 11112456666677777
Q ss_pred HcCc
Q 041097 77 INGG 80 (391)
Q Consensus 77 ~~k~ 80 (391)
.+++
T Consensus 80 ~~~~ 83 (196)
T PF00448_consen 80 RKKG 83 (196)
T ss_dssp HHTT
T ss_pred hhcC
Confidence 6644
No 459
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.065 Score=46.84 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.|||||.|.+--
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999754
No 460
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.83 E-value=0.066 Score=46.42 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||.+.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 461
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=92.83 E-value=0.064 Score=44.98 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=17.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||++.+..
T Consensus 12 v~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 12 ILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred EEEECcCCCCHHHHHHHHcc
Confidence 57999999999999998754
No 462
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.063 Score=46.58 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred EEEECCCCCCHHHHHHHhcc
Confidence 58999999999999999876
No 463
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.81 E-value=0.065 Score=47.36 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|+|||||++.+..
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 464
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.79 E-value=0.068 Score=47.33 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|.|.+|.||||+.+.++.+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 579999999999999999885
No 465
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.79 E-value=0.067 Score=46.87 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||...+..
T Consensus 34 vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999875
No 466
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=92.78 E-value=0.078 Score=44.66 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+...
T Consensus 18 v~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 18 VIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred EEEECCCCCCHHHHHHHHccC
Confidence 579999999999999998653
No 467
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.78 E-value=0.065 Score=48.24 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 33 TAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999976
No 468
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.78 E-value=0.068 Score=45.42 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 28 ~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999987
No 469
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=92.78 E-value=0.067 Score=44.16 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-.|+|||||...+.+
T Consensus 3 i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEecCCCCHHHHHHHHhC
Confidence 68999999999999999875
No 470
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.77 E-value=0.064 Score=48.66 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-||+||||++..+..
T Consensus 5 iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 5 IAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 56889999999999999765
No 471
>PLN02165 adenylate isopentenyltransferase
Probab=92.75 E-value=0.065 Score=49.81 Aligned_cols=20 Identities=10% Similarity=0.350 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||||..+..
T Consensus 46 ivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999876
No 472
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.75 E-value=0.065 Score=48.38 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
++|+|..|.|||||++.+...
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 30 TGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 589999999999999999863
No 473
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=92.75 E-value=0.086 Score=45.24 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.++
T Consensus 9 ivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 474
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.066 Score=48.18 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 34 TALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999964
No 475
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.74 E-value=0.067 Score=48.37 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 33 ~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 33 TAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 476
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.73 E-value=0.068 Score=47.74 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 30 VVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 477
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.71 E-value=0.063 Score=48.78 Aligned_cols=20 Identities=20% Similarity=-0.016 Sum_probs=16.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|.+|+||||+|+.+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 46899999999999999776
No 478
>PRK06921 hypothetical protein; Provisional
Probab=92.70 E-value=0.093 Score=47.64 Aligned_cols=33 Identities=18% Similarity=0.000 Sum_probs=24.1
Q ss_pred cEEcCCCCcHHHHHHHHhCCcccccc-ccEEEEEEc
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHY-FDCHAWVQE 36 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~-F~~~~~~~v 36 (391)
-++|..|+|||.||.++.+ ++... -..++|++.
T Consensus 121 ~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 121 ALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred EEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 5899999999999999988 34332 234556654
No 479
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.70 E-value=0.067 Score=48.71 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 36 TAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 480
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=92.70 E-value=0.076 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||+..+..+
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~ 23 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSG 23 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 679999999999999998543
No 481
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.70 E-value=0.14 Score=48.22 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=39.0
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccc----cEEEEEEcCCCcChHHHHHHHHHhhcCCCC
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKHYF----DCHAWVQESLPYDADQILYDIIKFVMPSPE 58 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~~F----~~~~~~~vs~~~~~~~i~~~~~~~~~~~~e 58 (391)
|+|..|+|||+|+..++-+.+++... ..++|+.--..|+.+++.+ ++..+.|..+
T Consensus 131 I~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~ 189 (344)
T PLN03187 131 AFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDAD 189 (344)
T ss_pred EecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChh
Confidence 89999999999999876433343221 4788998888899998765 4555555433
No 482
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.69 E-value=0.067 Score=48.78 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999999999876
No 483
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=92.69 E-value=0.086 Score=45.47 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.5
Q ss_pred CcEEcCCCCcHHHHHH-HHhC
Q 041097 1 MAVLDSIGLDKTAFAA-EAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~-~vy~ 20 (391)
|.|+|-+|||||+|+. ..++
T Consensus 5 iv~vG~~~vGKTsLi~~~~~~ 25 (195)
T cd01873 5 CVVVGDNAVGKTRLICARACN 25 (195)
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999994 5544
No 484
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=92.66 E-value=0.074 Score=45.96 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-+|+|||||...+..
T Consensus 4 I~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 4 IAVTGESGAGKSSFINALRG 23 (197)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999976
No 485
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.65 E-value=0.07 Score=48.29 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+.-
T Consensus 41 ~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 41 TAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999974
No 486
>COG4240 Predicted kinase [General function prediction only]
Probab=92.63 E-value=0.058 Score=46.74 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=19.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|.-|.||||++-++++
T Consensus 53 ~gisGpQGSGKStls~~i~~ 72 (300)
T COG4240 53 VGISGPQGSGKSTLSALIVR 72 (300)
T ss_pred EEeecCCCCchhhHHHHHHH
Confidence 69999999999999999998
No 487
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.63 E-value=0.071 Score=47.37 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 488
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.62 E-value=0.089 Score=45.02 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|-+|+|||||++.+.+.
T Consensus 3 ivivG~~~vGKTsli~~~~~~ 23 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRG 23 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999987653
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.61 E-value=0.071 Score=51.32 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|-++|..|+|||++|+++.+.
T Consensus 182 vLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999883
No 490
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=92.60 E-value=0.072 Score=46.47 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+++.+-.
T Consensus 8 igitG~igsGKSt~~~~l~~ 27 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAE 27 (208)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999764
No 491
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=92.59 E-value=0.081 Score=44.74 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|.|+.|+||||+.+.+.+.
T Consensus 17 ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 17 ILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp EEEEESTTSSHHHHHHHHHSS
T ss_pred EEEECCCccchHHHHHHhhhc
Confidence 468999999999999998764
No 492
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.59 E-value=0.099 Score=51.75 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=18.2
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-+||.+|+|||++|+++++.
T Consensus 220 LLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 220 LLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred EEECCCCCcHHHHHHHHHHh
Confidence 47999999999999999983
No 493
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.071 Score=48.62 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 53 ~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 53 TAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999975
No 494
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.59 E-value=0.078 Score=43.90 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||+||.|.|++
T Consensus 32 iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred EEEeCCCCccHHHHHHHHHh
Confidence 57999999999999999998
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.59 E-value=0.075 Score=45.87 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|.|||||.|-+..
T Consensus 31 v~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 57999999999999999754
No 496
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.58 E-value=0.072 Score=47.39 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 30 ~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 497
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=92.57 E-value=0.096 Score=43.74 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 8 i~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999987653
No 498
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.57 E-value=0.072 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 499
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.57 E-value=0.072 Score=48.15 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|.|..|.|||||++.++.
T Consensus 35 ~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 35 LGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 500
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=92.57 E-value=0.072 Score=47.96 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 29 VALIGPSGSGKSTILRILMT 48 (252)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
Done!