Query 041097
Match_columns 391
No_of_seqs 180 out of 3334
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.3E-19 4.6E-24 169.0 14.7 223 129-364 81-310 (328)
2 4fcg_A Uncharacterized protein 99.8 4.4E-19 1.5E-23 165.5 15.8 191 151-366 81-288 (328)
3 3rgz_A Protein brassinosteroid 99.7 1.1E-17 3.7E-22 173.5 12.6 216 173-390 436-765 (768)
4 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.8E-21 149.3 17.2 201 151-366 52-274 (330)
5 1ogq_A PGIP-2, polygalacturona 99.7 1E-16 3.5E-21 148.4 14.2 214 129-366 50-279 (313)
6 3zyi_A Leucine-rich repeat-con 99.7 5.1E-16 1.8E-20 151.1 16.2 205 151-366 75-301 (452)
7 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-16 9.8E-21 146.6 13.5 208 151-366 54-305 (332)
8 3zyj_A Leucine-rich repeat-con 99.7 6.2E-16 2.1E-20 150.0 15.7 203 151-366 64-290 (440)
9 2z66_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 144.1 13.1 219 128-366 27-259 (306)
10 2id5_A Lingo-1, leucine rich r 99.7 3.7E-15 1.3E-19 146.0 20.5 232 129-366 32-331 (477)
11 1p9a_G Platelet glycoprotein I 99.7 1.3E-15 4.3E-20 139.5 15.2 178 179-375 31-222 (290)
12 3v47_A TOLL-like receptor 5B a 99.7 1.8E-15 6.3E-20 147.1 17.0 87 277-365 318-405 (455)
13 3vq2_A TLR4, TOLL-like recepto 99.7 6.6E-16 2.2E-20 155.8 14.1 204 151-366 328-556 (606)
14 3o6n_A APL1; leucine-rich repe 99.6 2E-15 7E-20 144.0 16.2 86 277-365 243-328 (390)
15 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 6.7E-20 137.8 15.3 192 151-366 32-236 (285)
16 3oja_B Anopheles plasmodium-re 99.6 2.2E-15 7.4E-20 151.9 15.6 85 277-364 249-333 (597)
17 2o6q_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 133.0 17.3 169 179-366 37-216 (270)
18 4fmz_A Internalin; leucine ric 99.6 1.3E-14 4.3E-19 136.1 19.5 84 278-366 239-322 (347)
19 4fmz_A Internalin; leucine ric 99.6 5.3E-15 1.8E-19 138.7 16.8 87 275-366 258-344 (347)
20 1ogq_A PGIP-2, polygalacturona 99.6 5.7E-16 1.9E-20 143.4 9.7 216 127-366 74-302 (313)
21 1h6u_A Internalin H; cell adhe 99.6 3.7E-15 1.3E-19 137.6 14.7 180 151-366 41-228 (308)
22 4eco_A Uncharacterized protein 99.6 5.5E-15 1.9E-19 150.0 17.3 227 128-364 248-545 (636)
23 3o6n_A APL1; leucine-rich repe 99.6 4.2E-15 1.4E-19 141.8 15.5 226 129-366 45-306 (390)
24 3rgz_A Protein brassinosteroid 99.6 1.7E-15 5.7E-20 157.1 13.4 195 171-366 310-549 (768)
25 4ecn_A Leucine-rich repeat pro 99.6 6E-15 2E-19 153.4 17.5 188 174-366 590-838 (876)
26 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.9E-20 150.0 10.3 202 151-366 34-248 (487)
27 3oja_B Anopheles plasmodium-re 99.6 6.4E-15 2.2E-19 148.4 15.9 205 151-366 75-312 (597)
28 1o6v_A Internalin A; bacterial 99.6 2.2E-14 7.6E-19 140.1 19.1 221 129-366 46-320 (466)
29 4eco_A Uncharacterized protein 99.6 3.7E-15 1.3E-19 151.2 13.7 188 174-366 348-598 (636)
30 3o53_A Protein LRIM1, AGAP0063 99.6 1.7E-15 5.9E-20 140.4 10.3 202 151-366 34-248 (317)
31 2id5_A Lingo-1, leucine rich r 99.6 2.2E-14 7.7E-19 140.4 18.5 205 151-366 32-259 (477)
32 3v47_A TOLL-like receptor 5B a 99.6 1.1E-14 3.7E-19 141.7 15.4 234 128-366 29-382 (455)
33 3g06_A SSPH2 (leucine-rich rep 99.6 5.1E-14 1.7E-18 141.7 20.1 212 129-366 61-295 (622)
34 2z80_A TOLL-like receptor 2, v 99.6 5.9E-15 2E-19 138.9 12.1 227 129-366 52-312 (353)
35 4ecn_A Leucine-rich repeat pro 99.6 3E-14 1E-18 148.2 18.0 232 128-366 490-787 (876)
36 1ozn_A Reticulon 4 receptor; N 99.6 3.7E-14 1.3E-18 129.2 16.3 170 178-366 31-212 (285)
37 2z62_A TOLL-like receptor 4, v 99.6 1.3E-14 4.6E-19 131.6 13.2 190 151-364 28-233 (276)
38 3t6q_A CD180 antigen; protein- 99.6 3.9E-14 1.3E-18 142.8 16.8 191 174-366 273-511 (606)
39 1o6v_A Internalin A; bacterial 99.6 5.4E-14 1.8E-18 137.4 17.2 200 151-366 46-276 (466)
40 1h6t_A Internalin B; cell adhe 99.6 3.5E-14 1.2E-18 130.0 14.3 162 177-366 44-211 (291)
41 3bz5_A Internalin-J, INLJ; leu 99.6 1E-13 3.4E-18 135.0 17.9 205 128-362 41-261 (457)
42 3t6q_A CD180 antigen; protein- 99.6 2.4E-14 8.1E-19 144.4 13.7 231 128-366 277-558 (606)
43 1wwl_A Monocyte differentiatio 99.6 2.1E-14 7.3E-19 132.7 12.3 182 177-366 93-307 (312)
44 2ft3_A Biglycan; proteoglycan, 99.6 5E-14 1.7E-18 131.3 14.9 226 129-366 54-331 (332)
45 3rfs_A Internalin B, repeat mo 99.6 7.7E-14 2.7E-18 126.3 15.7 173 151-365 41-215 (272)
46 2z66_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 133.8 10.6 193 151-366 28-234 (306)
47 2z80_A TOLL-like receptor 2, v 99.5 1E-14 3.5E-19 137.2 9.8 207 151-366 52-288 (353)
48 3zyi_A Leucine-rich repeat-con 99.5 5.7E-14 1.9E-18 136.7 15.0 180 179-366 75-277 (452)
49 3oja_A Leucine-rich immune mol 99.5 2.4E-14 8.4E-19 140.5 12.3 178 178-366 33-225 (487)
50 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-14 4.9E-19 134.2 10.0 185 171-366 26-225 (317)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1E-13 3.5E-18 138.6 16.9 37 329-366 471-508 (562)
52 3m19_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 122.2 16.5 166 180-366 15-190 (251)
53 1xku_A Decorin; proteoglycan, 99.5 1.7E-13 5.8E-18 127.6 16.6 179 179-366 52-251 (330)
54 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-13 3.8E-18 139.8 16.6 99 275-375 486-594 (635)
55 3j0a_A TOLL-like receptor 5; m 99.5 2E-13 6.7E-18 143.0 18.3 234 128-366 23-373 (844)
56 3zyj_A Leucine-rich repeat-con 99.5 8.8E-14 3E-18 134.9 14.4 180 179-366 64-266 (440)
57 2o6q_A Variable lymphocyte rec 99.5 2.8E-13 9.6E-18 122.5 16.4 166 179-366 16-192 (270)
58 2z81_A CD282 antigen, TOLL-lik 99.5 1.6E-13 5.4E-18 136.7 15.3 90 175-264 94-205 (549)
59 3bz5_A Internalin-J, INLJ; leu 99.5 4E-13 1.4E-17 130.8 17.4 125 127-264 62-200 (457)
60 1m9s_A Internalin B; cell inva 99.5 9.5E-14 3.3E-18 139.4 13.3 161 178-366 42-208 (605)
61 2z7x_B TOLL-like receptor 1, v 99.5 2.9E-13 9.9E-18 133.9 16.4 108 129-242 21-146 (520)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 5E-13 1.7E-17 133.6 17.2 108 129-242 52-177 (562)
63 3vq2_A TLR4, TOLL-like recepto 99.5 1.1E-13 3.8E-18 139.5 12.5 206 151-366 285-532 (606)
64 4ezg_A Putative uncharacterize 99.5 1.5E-13 5.3E-18 118.1 11.5 151 176-366 41-192 (197)
65 3rfs_A Internalin B, repeat mo 99.5 3.9E-13 1.3E-17 121.7 14.7 197 127-356 39-247 (272)
66 2xwt_C Thyrotropin receptor; s 99.5 1.7E-13 5.8E-18 121.6 12.0 188 151-366 31-237 (239)
67 1p9a_G Platelet glycoprotein I 99.5 4E-13 1.4E-17 122.8 13.8 169 175-366 6-183 (290)
68 1h6u_A Internalin H; cell adhe 99.5 5.3E-13 1.8E-17 123.1 14.4 188 128-349 40-234 (308)
69 1ziw_A TOLL-like receptor 3; i 99.5 6.2E-13 2.1E-17 135.9 16.4 235 128-366 24-340 (680)
70 2ca6_A RAN GTPase-activating p 99.5 3.8E-14 1.3E-18 135.0 6.2 179 175-366 90-314 (386)
71 1jl5_A Outer protein YOPM; leu 99.5 1.4E-13 4.9E-18 133.8 10.3 163 181-365 73-247 (454)
72 2z63_A TOLL-like receptor 4, v 99.5 4.6E-13 1.6E-17 133.8 13.9 190 173-365 276-528 (570)
73 2z7x_B TOLL-like receptor 1, v 99.5 4.9E-13 1.7E-17 132.3 13.6 178 179-366 247-479 (520)
74 3j0a_A TOLL-like receptor 5; m 99.4 1.3E-12 4.5E-17 136.7 17.1 110 151-264 24-157 (844)
75 2z63_A TOLL-like receptor 4, v 99.4 3.6E-13 1.2E-17 134.6 12.2 164 177-342 323-529 (570)
76 1wwl_A Monocyte differentiatio 99.4 1.1E-13 3.9E-18 127.8 6.2 180 181-366 65-285 (312)
77 2z81_A CD282 antigen, TOLL-lik 99.4 9.5E-13 3.3E-17 131.0 13.0 195 151-366 26-234 (549)
78 2v9t_B SLIT homolog 2 protein 99.4 2.2E-12 7.5E-17 113.0 13.7 148 182-366 14-163 (220)
79 2v70_A SLIT-2, SLIT homolog 2 99.4 2.3E-12 7.8E-17 112.8 13.8 149 182-366 14-164 (220)
80 2ast_B S-phase kinase-associat 99.4 1.8E-13 6.3E-18 127.5 6.8 175 176-365 90-282 (336)
81 3cvr_A Invasion plasmid antige 99.4 3.6E-12 1.2E-16 126.8 14.7 153 179-366 80-241 (571)
82 2z62_A TOLL-like receptor 4, v 99.4 1.7E-12 5.9E-17 117.5 10.6 194 128-342 27-235 (276)
83 1ziw_A TOLL-like receptor 3; i 99.4 9.8E-12 3.4E-16 127.0 17.4 208 151-366 381-620 (680)
84 3g06_A SSPH2 (leucine-rich rep 99.4 5E-12 1.7E-16 127.2 14.8 210 130-366 41-272 (622)
85 2o6s_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 110.8 11.6 152 179-356 28-190 (208)
86 4glp_A Monocyte differentiatio 99.4 1E-12 3.5E-17 121.2 8.8 179 178-366 90-305 (310)
87 3m19_A Variable lymphocyte rec 99.4 8.9E-12 3.1E-16 111.3 14.6 144 180-342 36-190 (251)
88 3e6j_A Variable lymphocyte rec 99.4 7.4E-12 2.5E-16 110.3 13.8 146 182-366 22-170 (229)
89 4glp_A Monocyte differentiatio 99.4 1.6E-12 5.6E-17 119.9 9.5 182 180-366 65-283 (310)
90 1h6t_A Internalin B; cell adhe 99.3 5.9E-12 2E-16 115.1 12.8 165 151-348 46-216 (291)
91 1jl5_A Outer protein YOPM; leu 99.3 1.5E-11 5.1E-16 119.5 16.1 110 129-264 91-204 (454)
92 1xeu_A Internalin C; cellular 99.3 8.2E-13 2.8E-17 119.0 6.7 147 174-348 36-188 (263)
93 3goz_A Leucine-rich repeat-con 99.3 1.5E-12 5E-17 122.9 8.3 119 246-366 157-295 (362)
94 2o6s_A Variable lymphocyte rec 99.3 1.9E-11 6.6E-16 105.8 14.5 146 182-365 10-158 (208)
95 1m9s_A Internalin B; cell inva 99.3 9E-12 3.1E-16 125.1 12.4 143 174-342 60-208 (605)
96 2xot_A Amphoterin-induced prot 99.3 8.6E-12 3E-16 117.6 11.6 164 182-366 21-200 (361)
97 2xwt_C Thyrotropin receptor; s 99.3 1.1E-11 3.9E-16 109.7 11.2 189 128-343 30-238 (239)
98 1dce_A Protein (RAB geranylger 99.3 3.8E-14 1.3E-18 141.4 -5.6 174 176-366 346-544 (567)
99 2ast_B S-phase kinase-associat 99.3 2.7E-12 9.3E-17 119.5 6.8 174 151-341 93-282 (336)
100 1xeu_A Internalin C; cellular 99.3 1.8E-11 6E-16 110.2 11.0 142 151-321 41-186 (263)
101 1z7x_W Ribonuclease inhibitor; 99.3 1.1E-12 3.6E-17 127.7 3.0 213 151-366 142-409 (461)
102 2ca6_A RAN GTPase-activating p 99.3 3.2E-12 1.1E-16 121.6 6.2 106 255-366 159-285 (386)
103 2a5y_B CED-4; apoptosis; HET: 99.3 1.5E-11 5.2E-16 122.4 10.7 89 1-89 155-253 (549)
104 1z7x_W Ribonuclease inhibitor; 99.3 2.7E-12 9.1E-17 124.9 5.1 213 151-366 28-295 (461)
105 2ell_A Acidic leucine-rich nuc 99.2 5.1E-11 1.8E-15 99.4 11.8 41 176-216 21-63 (168)
106 4g8a_A TOLL-like receptor 4; l 99.2 2.3E-11 7.8E-16 122.8 11.0 168 179-366 52-235 (635)
107 4ay9_X Follicle-stimulating ho 99.2 5.5E-11 1.9E-15 111.5 12.3 200 151-364 30-255 (350)
108 2v70_A SLIT-2, SLIT homolog 2 99.2 9.2E-11 3.1E-15 102.5 12.7 123 179-319 32-165 (220)
109 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.6E-15 100.2 12.7 146 151-341 44-191 (197)
110 3e6j_A Variable lymphocyte rec 99.2 9.4E-11 3.2E-15 103.1 12.5 122 179-319 40-171 (229)
111 2v9t_B SLIT homolog 2 protein 99.2 9E-11 3.1E-15 102.6 12.0 39 179-217 32-71 (220)
112 2xot_A Amphoterin-induced prot 99.2 9.5E-11 3.3E-15 110.4 12.3 143 204-365 20-173 (361)
113 3goz_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 113.7 8.4 204 153-366 24-264 (362)
114 4b8c_D Glucose-repressible alc 99.2 3.6E-12 1.2E-16 130.9 0.7 114 171-303 216-336 (727)
115 2je0_A Acidic leucine-rich nuc 99.1 1.4E-10 4.8E-15 94.6 8.9 122 176-315 14-148 (149)
116 1w8a_A SLIT protein; signaling 99.1 6.3E-10 2.1E-14 95.0 12.4 126 182-342 11-137 (192)
117 1a9n_A U2A', U2A'; complex (nu 99.1 3.8E-10 1.3E-14 94.9 9.7 133 175-368 15-153 (176)
118 3cvr_A Invasion plasmid antige 99.1 5.5E-10 1.9E-14 111.1 11.5 184 130-354 60-253 (571)
119 2je0_A Acidic leucine-rich nuc 99.1 2.5E-10 8.6E-15 93.1 7.2 112 246-364 33-149 (149)
120 2wfh_A SLIT homolog 2 protein 99.0 9.5E-10 3.2E-14 94.0 10.6 119 205-341 13-136 (193)
121 2wfh_A SLIT homolog 2 protein 99.0 2.1E-09 7.2E-14 91.8 12.2 119 182-320 13-139 (193)
122 2o6r_A Variable lymphocyte rec 99.0 4.9E-09 1.7E-13 88.0 13.2 123 182-342 10-135 (177)
123 4ay9_X Follicle-stimulating ho 99.0 3.9E-09 1.3E-13 98.9 13.1 212 128-352 29-267 (350)
124 3ogk_B Coronatine-insensitive 99.0 5.2E-10 1.8E-14 112.1 6.9 41 170-210 211-251 (592)
125 1dce_A Protein (RAB geranylger 99.0 1.2E-09 4.2E-14 108.8 9.3 147 172-338 402-567 (567)
126 4b8c_D Glucose-repressible alc 98.9 6.8E-10 2.3E-14 114.0 6.9 111 247-366 216-327 (727)
127 2ell_A Acidic leucine-rich nuc 98.9 3.1E-09 1.1E-13 88.4 8.4 127 151-315 24-155 (168)
128 1vt4_I APAF-1 related killer D 98.9 1.3E-09 4.4E-14 112.7 5.8 52 1-52 153-205 (1221)
129 3ogk_B Coronatine-insensitive 98.8 2.2E-09 7.5E-14 107.6 6.0 127 235-363 221-386 (592)
130 1w8a_A SLIT protein; signaling 98.8 9.7E-09 3.3E-13 87.5 8.9 108 180-321 30-140 (192)
131 1ds9_A Outer arm dynein; leuci 98.8 3.2E-11 1.1E-15 103.6 -7.4 77 283-362 93-181 (198)
132 2o6r_A Variable lymphocyte rec 98.8 3.2E-08 1.1E-12 83.0 11.1 109 178-321 27-138 (177)
133 2r9u_A Variable lymphocyte rec 98.8 2.7E-08 9.3E-13 83.4 10.3 102 182-320 15-118 (174)
134 3g39_A Variable lymphocyte rec 98.8 2.7E-08 9.4E-13 83.0 10.2 103 181-320 11-115 (170)
135 2p1m_B Transport inhibitor res 98.8 4E-09 1.4E-13 105.7 5.1 84 278-363 285-380 (594)
136 1ds9_A Outer arm dynein; leuci 98.8 2.4E-10 8.2E-15 98.1 -3.6 48 171-219 40-87 (198)
137 1a9n_A U2A', U2A'; complex (nu 98.7 1.3E-08 4.6E-13 85.3 6.8 61 151-218 19-80 (176)
138 2p1m_B Transport inhibitor res 98.7 3.8E-08 1.3E-12 98.5 9.2 99 129-229 105-221 (594)
139 2r9u_A Variable lymphocyte rec 98.5 2E-07 6.8E-12 78.0 8.5 64 277-341 52-115 (174)
140 3g39_A Variable lymphocyte rec 98.5 2.9E-07 1E-11 76.6 8.5 64 277-341 49-112 (170)
141 1z6t_A APAF-1, apoptotic prote 98.4 2.2E-07 7.6E-12 93.1 7.3 86 1-87 150-244 (591)
142 3sfz_A APAF-1, apoptotic pepti 98.4 4.1E-07 1.4E-11 98.9 9.3 87 1-87 150-244 (1249)
143 3sb4_A Hypothetical leucine ri 98.4 1.3E-06 4.5E-11 80.8 11.0 44 178-222 100-144 (329)
144 2ifg_A High affinity nerve gro 98.4 1.1E-06 3.6E-11 81.9 9.5 34 184-218 13-48 (347)
145 3e4g_A ATP synthase subunit S, 98.2 9.8E-07 3.4E-11 73.3 5.0 84 283-366 61-150 (176)
146 2ifg_A High affinity nerve gro 98.2 2.7E-06 9.1E-11 79.2 7.0 89 246-342 23-114 (347)
147 3un9_A NLR family member X1; l 98.1 1E-06 3.5E-11 83.0 2.7 36 283-318 183-222 (372)
148 2ra8_A Uncharacterized protein 98.0 1.3E-05 4.5E-10 75.0 8.1 192 147-375 102-329 (362)
149 3un9_A NLR family member X1; l 98.0 5.7E-06 2E-10 77.9 5.0 38 178-215 71-114 (372)
150 2ra8_A Uncharacterized protein 97.9 3.5E-05 1.2E-09 72.1 9.2 180 151-366 139-341 (362)
151 4fdw_A Leucine rich hypothetic 97.9 0.00036 1.2E-08 66.2 15.6 42 180-222 158-200 (401)
152 3sb4_A Hypothetical leucine ri 97.8 0.0001 3.5E-09 67.9 10.9 178 173-362 118-328 (329)
153 4fdw_A Leucine rich hypothetic 97.6 0.00083 2.8E-08 63.7 14.3 181 173-363 174-378 (401)
154 3e4g_A ATP synthase subunit S, 97.2 0.0001 3.5E-09 61.0 1.4 68 279-347 82-155 (176)
155 1io0_A Tropomodulin; LRR prote 97.1 0.00028 9.5E-09 59.2 3.7 46 170-215 27-78 (185)
156 2a5y_B CED-4; apoptosis; HET: 97.0 2.8E-05 9.6E-10 77.1 -4.2 79 23-115 377-473 (549)
157 2qby_B CDC6 homolog 3, cell di 97.0 0.0011 3.8E-08 62.1 6.7 84 1-86 48-140 (384)
158 1w5s_A Origin recognition comp 96.9 0.002 6.8E-08 61.0 8.2 50 2-53 56-111 (412)
159 1io0_A Tropomodulin; LRR prote 96.9 0.00038 1.3E-08 58.4 2.5 119 246-367 27-163 (185)
160 3rw6_A Nuclear RNA export fact 96.6 0.002 6.9E-08 57.2 5.3 82 283-366 170-262 (267)
161 3rw6_A Nuclear RNA export fact 96.5 0.0019 6.5E-08 57.4 4.4 13 37-49 32-44 (267)
162 3lw7_A Adenylate kinase relate 96.4 0.0011 3.7E-08 54.5 2.1 18 1-18 4-21 (179)
163 2v1u_A Cell division control p 96.3 0.011 3.7E-07 55.2 8.5 75 1-78 47-127 (387)
164 3ec2_A DNA replication protein 96.3 0.0011 3.7E-08 55.2 1.3 20 1-20 41-60 (180)
165 2qby_A CDC6 homolog 1, cell di 96.3 0.0063 2.2E-07 56.7 6.7 50 1-52 48-100 (386)
166 2w58_A DNAI, primosome compone 96.2 0.0015 5.3E-08 55.2 1.9 33 1-35 57-89 (202)
167 1kag_A SKI, shikimate kinase I 96.1 0.002 6.8E-08 53.0 2.1 20 1-20 7-26 (173)
168 3kb2_A SPBC2 prophage-derived 96.1 0.0021 7.3E-08 52.6 2.1 20 1-20 4-23 (173)
169 1zp6_A Hypothetical protein AT 96.0 0.002 7E-08 53.9 1.9 20 1-20 12-31 (191)
170 3vaa_A Shikimate kinase, SK; s 96.0 0.0025 8.6E-08 53.9 2.1 20 1-20 28-47 (199)
171 1qhx_A CPT, protein (chloramph 95.9 0.0026 9E-08 52.5 2.1 20 1-20 6-25 (178)
172 1ly1_A Polynucleotide kinase; 95.8 0.0032 1.1E-07 52.0 2.1 20 1-20 5-24 (181)
173 2if2_A Dephospho-COA kinase; a 95.8 0.003 1E-07 53.5 1.9 20 1-20 4-23 (204)
174 1fnn_A CDC6P, cell division co 95.8 0.0092 3.1E-07 55.8 5.4 51 1-53 47-98 (389)
175 1kgd_A CASK, peripheral plasma 95.8 0.0033 1.1E-07 52.3 2.1 20 1-20 8-27 (180)
176 4gp7_A Metallophosphoesterase; 95.8 0.0036 1.2E-07 51.6 2.2 20 1-20 12-31 (171)
177 1ye8_A Protein THEP1, hypothet 95.8 0.0035 1.2E-07 52.1 2.1 20 1-20 3-22 (178)
178 3trf_A Shikimate kinase, SK; a 95.8 0.0035 1.2E-07 52.1 2.1 20 1-20 8-27 (185)
179 1knq_A Gluconate kinase; ALFA/ 95.8 0.0036 1.2E-07 51.6 2.1 20 1-20 11-30 (175)
180 3t61_A Gluconokinase; PSI-biol 95.7 0.0036 1.2E-07 53.0 2.1 20 1-20 21-40 (202)
181 2jaq_A Deoxyguanosine kinase; 95.7 0.0037 1.3E-07 52.7 2.1 20 1-20 3-22 (205)
182 2kjq_A DNAA-related protein; s 95.7 0.0024 8.1E-08 51.4 0.7 20 1-20 39-58 (149)
183 2bdt_A BH3686; alpha-beta prot 95.7 0.004 1.4E-07 52.0 2.1 20 1-20 5-24 (189)
184 1zuh_A Shikimate kinase; alpha 95.7 0.0041 1.4E-07 50.9 2.1 20 1-20 10-29 (168)
185 3iij_A Coilin-interacting nucl 95.6 0.0041 1.4E-07 51.5 2.1 20 1-20 14-33 (180)
186 1y63_A LMAJ004144AAA protein; 95.6 0.0041 1.4E-07 51.8 2.1 20 1-20 13-32 (184)
187 4eun_A Thermoresistant glucoki 95.6 0.0042 1.4E-07 52.6 2.1 20 1-20 32-51 (200)
188 3uie_A Adenylyl-sulfate kinase 95.6 0.0042 1.4E-07 52.5 2.1 20 1-20 28-47 (200)
189 1kht_A Adenylate kinase; phosp 95.6 0.0043 1.5E-07 51.7 2.1 20 1-20 6-25 (192)
190 1jbk_A CLPB protein; beta barr 95.6 0.0038 1.3E-07 51.7 1.7 20 1-20 46-65 (195)
191 1cke_A CK, MSSA, protein (cyti 95.6 0.0042 1.4E-07 53.5 2.1 20 1-20 8-27 (227)
192 2iyv_A Shikimate kinase, SK; t 95.6 0.0044 1.5E-07 51.5 2.1 20 1-20 5-24 (184)
193 1via_A Shikimate kinase; struc 95.6 0.0044 1.5E-07 51.1 2.1 20 1-20 7-26 (175)
194 3c8u_A Fructokinase; YP_612366 95.6 0.0036 1.2E-07 53.4 1.5 20 1-20 25-44 (208)
195 1jjv_A Dephospho-COA kinase; P 95.6 0.0044 1.5E-07 52.6 2.1 20 1-20 5-24 (206)
196 2j41_A Guanylate kinase; GMP, 95.6 0.0044 1.5E-07 52.4 2.1 20 1-20 9-28 (207)
197 3tr0_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.3 2.1 20 1-20 10-29 (205)
198 2qt1_A Nicotinamide riboside k 95.6 0.0042 1.4E-07 52.8 1.9 20 1-20 24-43 (207)
199 2pt5_A Shikimate kinase, SK; a 95.5 0.0049 1.7E-07 50.3 2.1 20 1-20 3-22 (168)
200 2qor_A Guanylate kinase; phosp 95.5 0.0048 1.6E-07 52.3 2.1 20 1-20 15-34 (204)
201 3bos_A Putative DNA replicatio 95.5 0.0048 1.7E-07 53.3 2.1 35 1-37 55-89 (242)
202 2grj_A Dephospho-COA kinase; T 95.5 0.0049 1.7E-07 51.9 2.1 20 1-20 15-34 (192)
203 1nks_A Adenylate kinase; therm 95.5 0.0047 1.6E-07 51.5 1.9 20 1-20 4-23 (194)
204 3asz_A Uridine kinase; cytidin 95.5 0.0047 1.6E-07 52.6 1.9 20 1-20 9-28 (211)
205 3cm0_A Adenylate kinase; ATP-b 95.5 0.0052 1.8E-07 51.1 2.1 20 1-20 7-26 (186)
206 1e6c_A Shikimate kinase; phosp 95.4 0.0055 1.9E-07 50.2 2.1 20 1-20 5-24 (173)
207 2yvu_A Probable adenylyl-sulfa 95.4 0.0056 1.9E-07 51.0 2.1 20 1-20 16-35 (186)
208 1njg_A DNA polymerase III subu 95.4 0.0049 1.7E-07 53.1 1.8 20 1-20 48-67 (250)
209 1tev_A UMP-CMP kinase; ploop, 95.4 0.0057 1.9E-07 51.1 2.1 20 1-20 6-25 (196)
210 1lvg_A Guanylate kinase, GMP k 95.4 0.0058 2E-07 51.6 2.1 20 1-20 7-26 (198)
211 2rhm_A Putative kinase; P-loop 95.3 0.0056 1.9E-07 51.1 1.9 20 1-20 8-27 (193)
212 3a00_A Guanylate kinase, GMP k 95.3 0.0061 2.1E-07 50.9 2.1 20 1-20 4-23 (186)
213 2pbr_A DTMP kinase, thymidylat 95.3 0.0062 2.1E-07 50.9 2.1 20 1-20 3-22 (195)
214 2bbw_A Adenylate kinase 4, AK4 95.3 0.0061 2.1E-07 53.4 2.1 20 1-20 30-49 (246)
215 2bwj_A Adenylate kinase 5; pho 95.3 0.006 2.1E-07 51.2 1.9 20 1-20 15-34 (199)
216 2cdn_A Adenylate kinase; phosp 95.3 0.0064 2.2E-07 51.3 2.1 20 1-20 23-42 (201)
217 1rz3_A Hypothetical protein rb 95.3 0.0062 2.1E-07 51.6 1.9 20 1-20 25-44 (201)
218 2fna_A Conserved hypothetical 95.3 0.015 5.1E-07 53.4 4.7 32 1-37 33-64 (357)
219 1odf_A YGR205W, hypothetical 3 95.2 0.0065 2.2E-07 54.7 2.1 20 1-20 34-53 (290)
220 2c95_A Adenylate kinase 1; tra 95.2 0.0063 2.1E-07 51.0 1.9 20 1-20 12-31 (196)
221 2chg_A Replication factor C sm 95.2 0.013 4.6E-07 49.6 4.0 20 1-20 41-60 (226)
222 1uf9_A TT1252 protein; P-loop, 95.2 0.0065 2.2E-07 51.2 1.9 20 1-20 11-30 (203)
223 2p65_A Hypothetical protein PF 95.2 0.005 1.7E-07 50.8 1.1 19 2-20 47-65 (187)
224 3tau_A Guanylate kinase, GMP k 95.2 0.007 2.4E-07 51.5 2.1 20 1-20 11-30 (208)
225 1in4_A RUVB, holliday junction 95.2 0.0064 2.2E-07 56.0 1.8 20 1-20 54-73 (334)
226 2ze6_A Isopentenyl transferase 95.1 0.0074 2.5E-07 53.2 2.1 20 1-20 4-23 (253)
227 3aez_A Pantothenate kinase; tr 95.1 0.0075 2.5E-07 54.9 2.1 20 1-20 93-112 (312)
228 1ukz_A Uridylate kinase; trans 95.1 0.0078 2.7E-07 50.8 2.1 20 1-20 18-37 (203)
229 2plr_A DTMP kinase, probable t 95.1 0.0077 2.6E-07 51.1 2.1 20 1-20 7-26 (213)
230 2x8a_A Nuclear valosin-contain 95.1 0.0077 2.6E-07 53.8 2.1 20 1-20 47-66 (274)
231 4e22_A Cytidylate kinase; P-lo 95.1 0.0076 2.6E-07 53.1 2.1 20 1-20 30-49 (252)
232 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.0075 2.6E-07 53.3 2.1 20 1-20 7-26 (260)
233 2vli_A Antibiotic resistance p 95.1 0.0055 1.9E-07 50.7 1.1 20 1-20 8-27 (183)
234 3fb4_A Adenylate kinase; psych 95.1 0.0079 2.7E-07 51.4 2.1 20 1-20 3-22 (216)
235 1qf9_A UMP/CMP kinase, protein 95.1 0.0076 2.6E-07 50.2 1.9 20 1-20 9-28 (194)
236 1ixz_A ATP-dependent metallopr 95.1 0.007 2.4E-07 53.2 1.7 20 1-20 52-71 (254)
237 3dl0_A Adenylate kinase; phosp 95.1 0.008 2.8E-07 51.3 2.1 20 1-20 3-22 (216)
238 2jeo_A Uridine-cytidine kinase 95.1 0.008 2.7E-07 52.6 2.1 20 1-20 28-47 (245)
239 1uj2_A Uridine-cytidine kinase 95.1 0.008 2.7E-07 52.8 2.1 20 1-20 25-44 (252)
240 1z6g_A Guanylate kinase; struc 95.1 0.0082 2.8E-07 51.6 2.1 20 1-20 26-45 (218)
241 2i3b_A HCR-ntpase, human cance 95.1 0.0086 2.9E-07 50.2 2.2 20 1-20 4-23 (189)
242 2z0h_A DTMP kinase, thymidylat 95.0 0.0087 3E-07 50.1 2.1 20 1-20 3-22 (197)
243 1ex7_A Guanylate kinase; subst 95.0 0.0069 2.3E-07 50.6 1.4 20 1-20 4-23 (186)
244 2pez_A Bifunctional 3'-phospho 94.9 0.0093 3.2E-07 49.3 2.1 20 1-20 8-27 (179)
245 3n70_A Transport activator; si 94.9 0.0086 2.9E-07 47.7 1.8 20 2-21 28-47 (145)
246 1znw_A Guanylate kinase, GMP k 94.9 0.0093 3.2E-07 50.7 2.1 20 1-20 23-42 (207)
247 3t15_A Ribulose bisphosphate c 94.9 0.0093 3.2E-07 53.8 2.2 19 2-20 40-58 (293)
248 3nwj_A ATSK2; P loop, shikimat 94.9 0.0092 3.2E-07 52.4 2.1 20 1-20 51-70 (250)
249 2qen_A Walker-type ATPase; unk 94.9 0.0079 2.7E-07 55.2 1.7 21 1-21 34-54 (350)
250 2f6r_A COA synthase, bifunctio 94.9 0.0086 3E-07 53.6 1.9 19 1-19 78-96 (281)
251 3h4m_A Proteasome-activating n 94.9 0.01 3.5E-07 53.0 2.4 19 2-20 55-73 (285)
252 2wwf_A Thymidilate kinase, put 94.9 0.009 3.1E-07 50.7 1.9 20 1-20 13-32 (212)
253 1vht_A Dephospho-COA kinase; s 94.9 0.0096 3.3E-07 51.0 2.1 20 1-20 7-26 (218)
254 2cvh_A DNA repair and recombin 94.9 0.023 7.7E-07 48.4 4.4 42 1-47 23-64 (220)
255 1zd8_A GTP:AMP phosphotransfer 94.9 0.0092 3.1E-07 51.5 1.9 20 1-20 10-29 (227)
256 1nn5_A Similar to deoxythymidy 94.9 0.0093 3.2E-07 50.7 1.9 20 1-20 12-31 (215)
257 3te6_A Regulatory protein SIR3 94.9 0.068 2.3E-06 48.5 7.7 69 3-76 50-126 (318)
258 1htw_A HI0065; nucleotide-bind 94.8 0.011 3.7E-07 48.0 2.1 20 1-20 36-55 (158)
259 1lv7_A FTSH; alpha/beta domain 94.8 0.0089 3E-07 52.6 1.7 20 1-20 48-67 (257)
260 1aky_A Adenylate kinase; ATP:A 94.8 0.01 3.5E-07 50.9 2.1 20 1-20 7-26 (220)
261 1l8q_A Chromosomal replication 94.8 0.009 3.1E-07 54.6 1.8 19 2-20 41-59 (324)
262 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.011 3.6E-07 52.1 2.1 19 2-20 43-61 (262)
263 2v54_A DTMP kinase, thymidylat 94.8 0.011 3.7E-07 49.9 2.1 20 1-20 7-26 (204)
264 1gtv_A TMK, thymidylate kinase 94.7 0.006 2.1E-07 51.9 0.3 20 1-20 3-22 (214)
265 3cf0_A Transitional endoplasmi 94.7 0.011 3.9E-07 53.4 2.1 20 1-20 52-71 (301)
266 1iy2_A ATP-dependent metallopr 94.7 0.01 3.4E-07 53.0 1.7 20 1-20 76-95 (278)
267 2ehv_A Hypothetical protein PH 94.6 0.012 4.2E-07 51.2 2.1 19 1-19 33-51 (251)
268 1rj9_A FTSY, signal recognitio 94.6 0.012 4.2E-07 53.3 2.1 20 1-20 105-124 (304)
269 2zej_A Dardarin, leucine-rich 94.6 0.014 4.7E-07 48.4 2.2 20 1-20 5-24 (184)
270 1xjc_A MOBB protein homolog; s 94.6 0.013 4.5E-07 48.0 2.1 20 1-20 7-26 (169)
271 2wji_A Ferrous iron transport 94.6 0.014 4.8E-07 47.4 2.2 21 1-21 6-26 (165)
272 1s96_A Guanylate kinase, GMP k 94.6 0.013 4.5E-07 50.4 2.1 20 1-20 19-38 (219)
273 1n0w_A DNA repair protein RAD5 94.6 0.034 1.2E-06 48.1 4.8 45 1-45 27-75 (243)
274 3ake_A Cytidylate kinase; CMP 94.6 0.013 4.5E-07 49.4 2.1 20 1-20 5-24 (208)
275 3b9p_A CG5977-PA, isoform A; A 94.5 0.013 4.5E-07 52.7 2.2 20 1-20 57-76 (297)
276 1oix_A RAS-related protein RAB 94.5 0.013 4.4E-07 49.0 1.9 21 1-21 32-52 (191)
277 1m7g_A Adenylylsulfate kinase; 94.5 0.014 4.7E-07 49.8 2.1 20 1-20 28-47 (211)
278 1e4v_A Adenylate kinase; trans 94.5 0.013 4.4E-07 50.0 1.9 20 1-20 3-22 (214)
279 3ney_A 55 kDa erythrocyte memb 94.5 0.014 4.8E-07 49.1 2.1 20 1-20 22-41 (197)
280 2f9l_A RAB11B, member RAS onco 94.5 0.014 4.9E-07 48.9 2.1 21 1-21 8-28 (199)
281 3tif_A Uncharacterized ABC tra 94.5 0.014 4.9E-07 50.7 2.1 20 1-20 34-53 (235)
282 2pcj_A ABC transporter, lipopr 94.5 0.014 4.6E-07 50.4 1.9 20 1-20 33-52 (224)
283 4fs7_A Uncharacterized protein 94.5 0.37 1.3E-05 45.0 12.1 79 278-364 293-375 (394)
284 3fwy_A Light-independent proto 94.5 0.014 4.8E-07 53.1 2.1 19 1-19 51-69 (314)
285 3tqc_A Pantothenate kinase; bi 94.5 0.014 4.7E-07 53.2 2.1 20 1-20 95-114 (321)
286 1sq5_A Pantothenate kinase; P- 94.4 0.013 4.6E-07 53.1 1.9 20 1-20 83-102 (308)
287 1zak_A Adenylate kinase; ATP:A 94.4 0.014 4.8E-07 50.1 1.9 20 1-20 8-27 (222)
288 2cbz_A Multidrug resistance-as 94.4 0.015 5.2E-07 50.6 2.1 20 1-20 34-53 (237)
289 1sgw_A Putative ABC transporte 94.4 0.015 5.2E-07 49.7 2.1 20 1-20 38-57 (214)
290 4a74_A DNA repair and recombin 94.4 0.014 4.9E-07 50.1 1.9 44 1-44 28-75 (231)
291 2xb4_A Adenylate kinase; ATP-b 94.4 0.015 5.2E-07 50.0 2.1 20 1-20 3-22 (223)
292 2f1r_A Molybdopterin-guanine d 94.4 0.0095 3.2E-07 49.1 0.7 20 1-20 5-24 (171)
293 2onk_A Molybdate/tungstate ABC 94.4 0.015 5.3E-07 50.7 2.1 20 1-20 27-46 (240)
294 2wjg_A FEOB, ferrous iron tran 94.4 0.017 5.7E-07 47.8 2.2 21 1-21 10-30 (188)
295 2ce2_X GTPase HRAS; signaling 94.3 0.017 5.8E-07 46.3 2.2 21 1-21 6-26 (166)
296 2px0_A Flagellar biosynthesis 94.3 0.014 4.9E-07 52.6 1.9 20 1-20 108-127 (296)
297 3be4_A Adenylate kinase; malar 94.3 0.015 5.1E-07 49.8 1.9 20 1-20 8-27 (217)
298 3con_A GTPase NRAS; structural 94.3 0.018 6.2E-07 47.7 2.4 21 1-21 24-44 (190)
299 2z4s_A Chromosomal replication 94.3 0.014 4.6E-07 56.0 1.8 20 1-20 133-152 (440)
300 3co5_A Putative two-component 94.3 0.0096 3.3E-07 47.3 0.6 20 2-21 31-50 (143)
301 2r62_A Cell division protease 94.3 0.013 4.6E-07 51.7 1.6 20 1-20 47-66 (268)
302 3lnc_A Guanylate kinase, GMP k 94.3 0.011 3.6E-07 51.3 0.8 20 1-20 30-50 (231)
303 3b85_A Phosphate starvation-in 94.3 0.012 4.2E-07 50.1 1.3 20 1-20 25-44 (208)
304 3tlx_A Adenylate kinase 2; str 94.3 0.016 5.6E-07 50.6 2.1 20 1-20 32-51 (243)
305 3b9q_A Chloroplast SRP recepto 94.2 0.017 5.6E-07 52.3 2.1 20 1-20 103-122 (302)
306 1ji0_A ABC transporter; ATP bi 94.2 0.017 5.9E-07 50.3 2.1 20 1-20 35-54 (240)
307 2dyk_A GTP-binding protein; GT 94.2 0.017 5.8E-07 46.2 1.9 21 1-21 4-24 (161)
308 2nzj_A GTP-binding protein REM 94.2 0.02 6.7E-07 46.6 2.3 21 1-21 7-27 (175)
309 3gfo_A Cobalt import ATP-bindi 94.2 0.018 6E-07 51.4 2.1 20 1-20 37-56 (275)
310 1b0u_A Histidine permease; ABC 94.2 0.018 6E-07 51.0 2.1 20 1-20 35-54 (262)
311 2pze_A Cystic fibrosis transme 94.2 0.018 6.1E-07 49.9 2.1 20 1-20 37-56 (229)
312 1z2a_A RAS-related protein RAB 94.2 0.017 6E-07 46.5 2.0 21 1-21 8-28 (168)
313 1g6h_A High-affinity branched- 94.2 0.018 6.2E-07 50.8 2.1 20 1-20 36-55 (257)
314 1c1y_A RAS-related protein RAP 94.1 0.022 7.4E-07 45.9 2.4 21 1-21 6-26 (167)
315 1u8z_A RAS-related protein RAL 94.1 0.022 7.5E-07 45.8 2.4 21 1-21 7-27 (168)
316 1mv5_A LMRA, multidrug resista 94.1 0.019 6.5E-07 50.2 2.1 20 1-20 31-50 (243)
317 2olj_A Amino acid ABC transpor 94.1 0.019 6.5E-07 50.8 2.1 20 1-20 53-72 (263)
318 2d2e_A SUFC protein; ABC-ATPas 94.1 0.019 6.6E-07 50.4 2.1 20 1-20 32-51 (250)
319 2ff7_A Alpha-hemolysin translo 94.1 0.02 6.7E-07 50.2 2.1 20 1-20 38-57 (247)
320 4g1u_C Hemin import ATP-bindin 94.1 0.019 6.6E-07 50.9 2.1 20 1-20 40-59 (266)
321 2ghi_A Transport protein; mult 94.0 0.02 6.7E-07 50.6 2.1 20 1-20 49-68 (260)
322 1ak2_A Adenylate kinase isoenz 94.0 0.019 6.6E-07 49.7 2.1 20 1-20 19-38 (233)
323 2erx_A GTP-binding protein DI- 94.0 0.023 7.9E-07 45.9 2.4 21 1-21 6-26 (172)
324 2zu0_C Probable ATP-dependent 94.0 0.02 6.7E-07 50.9 2.1 20 1-20 49-68 (267)
325 1vpl_A ABC transporter, ATP-bi 94.0 0.02 6.8E-07 50.5 2.1 20 1-20 44-63 (256)
326 3tw8_B RAS-related protein RAB 94.0 0.023 7.9E-07 46.4 2.4 21 1-21 12-32 (181)
327 2qi9_C Vitamin B12 import ATP- 94.0 0.021 7.1E-07 50.1 2.1 20 1-20 29-48 (249)
328 1d2n_A N-ethylmaleimide-sensit 94.0 0.021 7E-07 50.7 2.1 19 2-20 68-86 (272)
329 1z08_A RAS-related protein RAB 94.0 0.024 8.3E-07 45.8 2.4 21 1-21 9-29 (170)
330 2yz2_A Putative ABC transporte 94.0 0.021 7.1E-07 50.7 2.1 20 1-20 36-55 (266)
331 2hf9_A Probable hydrogenase ni 93.9 0.02 6.8E-07 49.1 1.9 20 1-20 41-60 (226)
332 3q72_A GTP-binding protein RAD 93.9 0.022 7.5E-07 45.9 2.1 20 1-20 5-24 (166)
333 1hqc_A RUVB; extended AAA-ATPa 93.9 0.018 6.3E-07 52.3 1.8 20 1-20 41-60 (324)
334 2ixe_A Antigen peptide transpo 93.9 0.021 7.2E-07 50.8 2.1 20 1-20 48-67 (271)
335 1yrb_A ATP(GTP)binding protein 93.9 0.021 7.1E-07 50.2 2.1 20 1-20 17-36 (262)
336 3r20_A Cytidylate kinase; stru 93.9 0.021 7.3E-07 49.4 2.1 20 1-20 12-31 (233)
337 2ged_A SR-beta, signal recogni 93.9 0.021 7.1E-07 47.5 2.0 21 1-21 51-71 (193)
338 3d3q_A TRNA delta(2)-isopenten 93.9 0.021 7.2E-07 52.3 2.1 20 1-20 10-29 (340)
339 2gj8_A MNME, tRNA modification 93.9 0.023 7.9E-07 46.5 2.2 21 1-21 7-27 (172)
340 3sop_A Neuronal-specific septi 93.9 0.02 7E-07 50.8 1.9 20 1-20 5-24 (270)
341 3q85_A GTP-binding protein REM 93.9 0.024 8.3E-07 45.8 2.2 20 1-20 5-24 (169)
342 2ihy_A ABC transporter, ATP-bi 93.9 0.022 7.6E-07 50.9 2.1 20 1-20 50-69 (279)
343 1z0j_A RAB-22, RAS-related pro 93.9 0.022 7.6E-07 46.0 2.0 21 1-21 9-29 (170)
344 2vp4_A Deoxynucleoside kinase; 93.8 0.017 6E-07 49.9 1.4 20 1-20 23-42 (230)
345 1m7b_A RND3/RHOE small GTP-bin 93.8 0.024 8.3E-07 46.7 2.2 21 1-21 10-30 (184)
346 2nq2_C Hypothetical ABC transp 93.8 0.023 7.8E-07 50.0 2.1 20 1-20 34-53 (253)
347 1gvn_B Zeta; postsegregational 93.8 0.019 6.3E-07 51.6 1.5 20 1-20 36-55 (287)
348 1ek0_A Protein (GTP-binding pr 93.8 0.023 7.8E-07 45.8 2.0 21 1-21 6-26 (170)
349 1np6_A Molybdopterin-guanine d 93.8 0.024 8.3E-07 46.7 2.1 20 1-20 9-28 (174)
350 3t1o_A Gliding protein MGLA; G 93.8 0.021 7.3E-07 47.4 1.8 20 1-20 17-36 (198)
351 3kkq_A RAS-related protein M-R 93.8 0.027 9.3E-07 46.2 2.4 21 1-21 21-41 (183)
352 3eie_A Vacuolar protein sortin 93.8 0.025 8.4E-07 51.7 2.3 19 2-20 55-73 (322)
353 1q3t_A Cytidylate kinase; nucl 93.7 0.024 8.1E-07 49.2 2.1 20 1-20 19-38 (236)
354 2p5t_B PEZT; postsegregational 93.7 0.016 5.4E-07 51.0 0.9 20 1-20 35-54 (253)
355 1f6b_A SAR1; gtpases, N-termin 93.7 0.021 7.3E-07 47.9 1.7 21 1-21 28-48 (198)
356 1xwi_A SKD1 protein; VPS4B, AA 93.7 0.021 7.2E-07 52.2 1.8 19 2-20 49-67 (322)
357 3c5c_A RAS-like protein 12; GD 93.7 0.028 9.5E-07 46.6 2.4 21 1-21 24-44 (187)
358 2ga8_A Hypothetical 39.9 kDa p 93.7 0.024 8.3E-07 52.1 2.1 20 1-20 27-46 (359)
359 1kao_A RAP2A; GTP-binding prot 93.7 0.029 9.8E-07 45.0 2.4 21 1-21 6-26 (167)
360 1fzq_A ADP-ribosylation factor 93.7 0.026 8.8E-07 46.6 2.1 21 1-21 19-39 (181)
361 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.025 8.6E-07 48.5 2.1 20 1-20 26-45 (235)
362 2v9p_A Replication protein E1; 93.7 0.025 8.4E-07 51.1 2.1 20 1-20 129-148 (305)
363 2lkc_A Translation initiation 93.7 0.034 1.2E-06 45.3 2.8 21 1-21 11-31 (178)
364 1ky3_A GTP-binding protein YPT 93.7 0.025 8.5E-07 46.2 2.0 21 1-21 11-31 (182)
365 3t5g_A GTP-binding protein RHE 93.6 0.028 9.5E-07 46.1 2.2 21 1-21 9-29 (181)
366 2eyu_A Twitching motility prot 93.6 0.026 8.8E-07 49.9 2.1 20 1-20 28-47 (261)
367 4dsu_A GTPase KRAS, isoform 2B 93.6 0.029 1E-06 46.2 2.4 21 1-21 7-27 (189)
368 1tue_A Replication protein E1; 93.6 0.019 6.4E-07 48.5 1.1 20 1-20 61-80 (212)
369 2fn4_A P23, RAS-related protei 93.6 0.028 9.6E-07 45.9 2.2 21 1-21 12-32 (181)
370 2og2_A Putative signal recogni 93.6 0.026 8.8E-07 52.3 2.1 20 1-20 160-179 (359)
371 1z0f_A RAB14, member RAS oncog 93.6 0.031 1.1E-06 45.5 2.4 21 1-21 18-38 (179)
372 2cxx_A Probable GTP-binding pr 93.5 0.029 9.8E-07 46.3 2.2 21 1-21 4-24 (190)
373 1svi_A GTP-binding protein YSX 93.5 0.028 9.5E-07 46.7 2.1 21 1-21 26-46 (195)
374 3nh6_A ATP-binding cassette SU 93.5 0.022 7.6E-07 51.5 1.5 20 1-20 83-102 (306)
375 3syl_A Protein CBBX; photosynt 93.5 0.023 7.8E-07 51.3 1.6 19 2-20 71-89 (309)
376 3ihw_A Centg3; RAS, centaurin, 93.5 0.032 1.1E-06 46.1 2.4 21 1-21 23-43 (184)
377 2a9k_A RAS-related protein RAL 93.5 0.033 1.1E-06 45.7 2.4 21 1-21 21-41 (187)
378 2qp9_X Vacuolar protein sortin 93.5 0.026 8.9E-07 52.3 1.9 19 2-20 88-106 (355)
379 3cbq_A GTP-binding protein REM 93.5 0.026 9E-07 47.2 1.8 20 1-20 26-45 (195)
380 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.033 1.1E-06 45.7 2.4 21 1-21 8-28 (186)
381 2hxs_A RAB-26, RAS-related pro 93.5 0.03 1E-06 45.7 2.1 21 1-21 9-29 (178)
382 1r2q_A RAS-related protein RAB 93.5 0.029 9.8E-07 45.2 2.0 21 1-21 9-29 (170)
383 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.028 9.7E-07 45.8 2.0 21 1-21 10-30 (177)
384 3pqc_A Probable GTP-binding pr 93.4 0.031 1E-06 46.3 2.2 21 1-21 26-46 (195)
385 2wsm_A Hydrogenase expression/ 93.4 0.027 9.4E-07 48.0 1.9 20 1-20 33-52 (221)
386 2pjz_A Hypothetical protein ST 93.4 0.029 1E-06 49.6 2.1 20 1-20 33-52 (263)
387 1a7j_A Phosphoribulokinase; tr 93.4 0.014 4.8E-07 52.5 -0.0 20 1-20 8-27 (290)
388 3e70_C DPA, signal recognition 93.4 0.028 9.7E-07 51.4 2.1 20 1-20 132-151 (328)
389 1ltq_A Polynucleotide kinase; 93.4 0.029 9.9E-07 50.5 2.1 20 1-20 5-24 (301)
390 3llu_A RAS-related GTP-binding 93.4 0.03 1E-06 46.8 2.1 20 1-20 23-42 (196)
391 1g16_A RAS-related protein SEC 93.4 0.028 9.6E-07 45.3 1.8 21 1-21 6-26 (170)
392 2bov_A RAla, RAS-related prote 93.4 0.034 1.2E-06 46.6 2.4 21 1-21 17-37 (206)
393 1m2o_B GTP-binding protein SAR 93.3 0.029 9.8E-07 46.7 1.8 21 1-21 26-46 (190)
394 2bme_A RAB4A, RAS-related prot 93.3 0.029 9.9E-07 46.2 1.8 21 1-21 13-33 (186)
395 1upt_A ARL1, ADP-ribosylation 93.3 0.031 1.1E-06 45.1 2.0 21 1-21 10-30 (171)
396 2oil_A CATX-8, RAS-related pro 93.3 0.031 1.1E-06 46.4 2.0 21 1-21 28-48 (193)
397 2yhs_A FTSY, cell division pro 93.3 0.03 1E-06 53.8 2.1 20 1-20 296-315 (503)
398 1vma_A Cell division protein F 93.3 0.031 1.1E-06 50.6 2.1 20 1-20 107-126 (306)
399 3pfi_A Holliday junction ATP-d 93.3 0.033 1.1E-06 51.0 2.3 19 2-20 59-77 (338)
400 3d8b_A Fidgetin-like protein 1 93.3 0.031 1.1E-06 51.8 2.2 19 2-20 121-139 (357)
401 1nrj_B SR-beta, signal recogni 93.3 0.031 1.1E-06 47.5 2.0 21 1-21 15-35 (218)
402 3sfz_A APAF-1, apoptotic pepti 93.3 0.024 8.1E-07 61.4 1.5 79 18-112 371-451 (1249)
403 1ls1_A Signal recognition part 93.3 0.031 1.1E-06 50.3 2.1 20 1-20 101-120 (295)
404 2qnr_A Septin-2, protein NEDD5 93.2 0.026 9E-07 51.0 1.5 20 1-20 21-40 (301)
405 2qgz_A Helicase loader, putati 93.2 0.028 9.7E-07 50.9 1.8 19 2-20 156-174 (308)
406 3bwd_D RAC-like GTP-binding pr 93.2 0.032 1.1E-06 45.6 2.0 21 1-21 11-31 (182)
407 4fcw_A Chaperone protein CLPB; 93.2 0.028 9.7E-07 50.7 1.7 20 1-20 50-69 (311)
408 4eaq_A DTMP kinase, thymidylat 93.2 0.048 1.6E-06 47.1 3.1 20 1-20 29-48 (229)
409 1cr0_A DNA primase/helicase; R 93.2 0.031 1E-06 50.3 1.9 46 1-50 38-84 (296)
410 2b6h_A ADP-ribosylation factor 93.2 0.036 1.2E-06 46.2 2.2 21 1-21 32-52 (192)
411 2atv_A RERG, RAS-like estrogen 93.2 0.038 1.3E-06 46.1 2.4 21 1-21 31-51 (196)
412 1vg8_A RAS-related protein RAB 93.2 0.032 1.1E-06 46.8 2.0 21 1-21 11-31 (207)
413 2efe_B Small GTP-binding prote 93.2 0.033 1.1E-06 45.6 1.9 21 1-21 15-35 (181)
414 4bas_A ADP-ribosylation factor 93.2 0.038 1.3E-06 46.0 2.3 21 1-21 20-40 (199)
415 1r8s_A ADP-ribosylation factor 93.2 0.031 1.1E-06 44.9 1.8 20 1-20 3-22 (164)
416 1svm_A Large T antigen; AAA+ f 93.2 0.033 1.1E-06 52.0 2.1 20 1-20 172-191 (377)
417 1zbd_A Rabphilin-3A; G protein 93.2 0.039 1.3E-06 46.2 2.4 21 1-21 11-31 (203)
418 1ksh_A ARF-like protein 2; sma 93.2 0.04 1.4E-06 45.4 2.4 22 1-22 21-42 (186)
419 2iwr_A Centaurin gamma 1; ANK 93.2 0.027 9.1E-07 46.1 1.3 21 1-21 10-30 (178)
420 2fg5_A RAB-22B, RAS-related pr 93.1 0.031 1.1E-06 46.5 1.8 21 1-21 26-46 (192)
421 2il1_A RAB12; G-protein, GDP, 93.1 0.036 1.2E-06 46.1 2.2 21 1-21 29-49 (192)
422 2fh5_B SR-beta, signal recogni 93.1 0.039 1.3E-06 46.7 2.4 21 1-21 10-30 (214)
423 1zu4_A FTSY; GTPase, signal re 93.1 0.034 1.2E-06 50.7 2.1 20 1-20 108-127 (320)
424 3tkl_A RAS-related protein RAB 93.1 0.04 1.4E-06 45.7 2.4 21 1-21 19-39 (196)
425 1iqp_A RFCS; clamp loader, ext 93.1 0.03 1E-06 50.8 1.7 19 2-20 50-68 (327)
426 1gwn_A RHO-related GTP-binding 93.1 0.038 1.3E-06 46.7 2.2 21 1-21 31-51 (205)
427 1nlf_A Regulatory protein REPA 93.1 0.033 1.1E-06 49.6 1.9 20 1-20 33-52 (279)
428 1sxj_B Activator 1 37 kDa subu 93.1 0.031 1.1E-06 50.6 1.8 19 2-20 46-64 (323)
429 2q3h_A RAS homolog gene family 93.1 0.038 1.3E-06 46.2 2.2 21 1-21 23-43 (201)
430 1pui_A ENGB, probable GTP-bind 93.1 0.021 7.2E-07 48.2 0.6 21 1-21 29-49 (210)
431 3crm_A TRNA delta(2)-isopenten 93.1 0.035 1.2E-06 50.5 2.1 20 1-20 8-27 (323)
432 3pvs_A Replication-associated 93.1 0.038 1.3E-06 52.9 2.4 19 2-20 54-72 (447)
433 3bc1_A RAS-related protein RAB 93.0 0.036 1.2E-06 45.8 2.0 21 1-21 14-34 (195)
434 1moz_A ARL1, ADP-ribosylation 93.0 0.029 9.8E-07 46.1 1.3 21 1-21 21-41 (183)
435 2o52_A RAS-related protein RAB 93.0 0.037 1.3E-06 46.4 2.0 21 1-21 28-48 (200)
436 2bbs_A Cystic fibrosis transme 93.0 0.035 1.2E-06 49.9 2.0 20 1-20 67-86 (290)
437 2h92_A Cytidylate kinase; ross 93.0 0.037 1.3E-06 47.1 2.1 20 1-20 6-25 (219)
438 2y8e_A RAB-protein 6, GH09086P 93.0 0.035 1.2E-06 45.2 1.8 21 1-21 17-37 (179)
439 3lxx_A GTPase IMAP family memb 93.0 0.043 1.5E-06 47.6 2.4 21 1-21 32-52 (239)
440 4gzl_A RAS-related C3 botulinu 92.9 0.039 1.3E-06 46.4 2.1 21 1-21 33-53 (204)
441 2g6b_A RAS-related protein RAB 92.9 0.038 1.3E-06 45.1 2.0 21 1-21 13-33 (180)
442 1zd9_A ADP-ribosylation factor 92.9 0.038 1.3E-06 45.8 2.0 21 1-21 25-45 (188)
443 2qu8_A Putative nucleolar GTP- 92.9 0.044 1.5E-06 47.0 2.4 21 1-21 32-52 (228)
444 3reg_A RHO-like small GTPase; 92.9 0.045 1.5E-06 45.5 2.4 21 1-21 26-46 (194)
445 3oes_A GTPase rhebl1; small GT 92.9 0.042 1.4E-06 46.0 2.2 21 1-21 27-47 (201)
446 2a5j_A RAS-related protein RAB 92.9 0.039 1.3E-06 45.8 2.0 21 1-21 24-44 (191)
447 2gf9_A RAS-related protein RAB 92.9 0.039 1.3E-06 45.6 2.0 21 1-21 25-45 (189)
448 1zj6_A ADP-ribosylation factor 92.8 0.044 1.5E-06 45.3 2.2 21 1-21 19-39 (187)
449 3uk6_A RUVB-like 2; hexameric 92.8 0.037 1.3E-06 51.3 1.9 19 2-20 74-92 (368)
450 2p5s_A RAS and EF-hand domain 92.8 0.04 1.4E-06 46.1 2.0 21 1-21 31-51 (199)
451 3clv_A RAB5 protein, putative; 92.8 0.04 1.4E-06 45.9 2.0 21 1-21 10-30 (208)
452 2i1q_A DNA repair and recombin 92.8 0.11 3.7E-06 47.3 5.0 47 2-48 102-162 (322)
453 3kjh_A CO dehydrogenase/acetyl 92.8 0.032 1.1E-06 48.5 1.4 20 1-20 3-22 (254)
454 1sxj_D Activator 1 41 kDa subu 92.8 0.035 1.2E-06 51.0 1.8 19 2-20 62-80 (353)
455 2j1l_A RHO-related GTP-binding 92.8 0.041 1.4E-06 46.7 2.0 21 1-21 37-57 (214)
456 2ocp_A DGK, deoxyguanosine kin 92.8 0.034 1.2E-06 48.3 1.6 20 1-20 5-24 (241)
457 3end_A Light-independent proto 92.8 0.04 1.4E-06 49.8 2.1 20 1-20 44-63 (307)
458 1pzn_A RAD51, DNA repair and r 92.8 0.098 3.4E-06 48.3 4.7 44 1-44 134-181 (349)
459 3bh0_A DNAB-like replicative h 92.7 0.12 4.2E-06 46.8 5.3 48 1-52 71-118 (315)
460 1v5w_A DMC1, meiotic recombina 92.7 0.11 3.6E-06 47.9 4.9 47 1-47 125-175 (343)
461 4b4t_M 26S protease regulatory 92.7 0.048 1.6E-06 51.8 2.5 18 3-20 220-237 (434)
462 2ew1_A RAS-related protein RAB 92.7 0.039 1.3E-06 46.5 1.7 21 1-21 29-49 (201)
463 2z43_A DNA repair and recombin 92.7 0.1 3.5E-06 47.6 4.7 47 1-47 110-160 (324)
464 1z06_A RAS-related protein RAB 92.7 0.043 1.5E-06 45.4 2.0 21 1-21 23-43 (189)
465 1x3s_A RAS-related protein RAB 92.7 0.043 1.5E-06 45.4 2.0 21 1-21 18-38 (195)
466 2h17_A ADP-ribosylation factor 92.7 0.042 1.4E-06 45.2 1.8 21 1-21 24-44 (181)
467 1ofh_A ATP-dependent HSL prote 92.7 0.043 1.5E-06 49.3 2.1 19 2-20 54-72 (310)
468 4b4t_K 26S protease regulatory 92.6 0.049 1.7E-06 51.6 2.5 18 3-20 211-228 (428)
469 3p32_A Probable GTPase RV1496/ 92.6 0.043 1.5E-06 50.8 2.1 20 1-20 82-101 (355)
470 4b4t_J 26S protease regulatory 92.6 0.051 1.7E-06 50.9 2.5 18 3-20 187-204 (405)
471 1lw7_A Transcriptional regulat 92.6 0.041 1.4E-06 51.1 1.9 20 1-20 173-192 (365)
472 2h57_A ADP-ribosylation factor 92.6 0.04 1.4E-06 45.6 1.7 22 1-22 24-45 (190)
473 1cp2_A CP2, nitrogenase iron p 92.6 0.042 1.4E-06 48.5 1.9 20 1-20 4-23 (269)
474 2gf0_A GTP-binding protein DI- 92.6 0.042 1.5E-06 45.7 1.8 21 1-21 11-31 (199)
475 2f7s_A C25KG, RAS-related prot 92.5 0.054 1.8E-06 45.9 2.4 21 1-21 28-48 (217)
476 3dz8_A RAS-related protein RAB 92.5 0.04 1.4E-06 45.7 1.6 21 1-21 26-46 (191)
477 2bjv_A PSP operon transcriptio 92.5 0.047 1.6E-06 48.1 2.1 20 2-21 33-52 (265)
478 2fv8_A H6, RHO-related GTP-bin 92.5 0.044 1.5E-06 46.2 1.8 21 1-21 28-48 (207)
479 3tui_C Methionine import ATP-b 92.5 0.047 1.6E-06 50.5 2.1 20 1-20 57-76 (366)
480 3gmt_A Adenylate kinase; ssgci 92.5 0.056 1.9E-06 46.6 2.4 20 1-20 11-30 (230)
481 2atx_A Small GTP binding prote 92.5 0.052 1.8E-06 45.1 2.2 21 1-21 21-41 (194)
482 1um8_A ATP-dependent CLP prote 92.4 0.051 1.7E-06 50.7 2.3 19 2-20 76-94 (376)
483 3fvq_A Fe(3+) IONS import ATP- 92.4 0.046 1.6E-06 50.5 1.9 20 1-20 33-52 (359)
484 3hws_A ATP-dependent CLP prote 92.4 0.044 1.5E-06 50.8 1.8 19 2-20 55-73 (363)
485 3kta_A Chromosome segregation 92.3 0.057 1.9E-06 44.5 2.3 19 2-20 30-48 (182)
486 4edh_A DTMP kinase, thymidylat 92.3 0.11 3.8E-06 44.2 4.1 20 1-20 9-28 (213)
487 3q3j_B RHO-related GTP-binding 92.3 0.059 2E-06 45.8 2.4 21 1-21 30-50 (214)
488 2vhj_A Ntpase P4, P4; non- hyd 92.3 0.059 2E-06 48.8 2.5 19 2-20 127-145 (331)
489 2dhr_A FTSH; AAA+ protein, hex 92.3 0.058 2E-06 52.3 2.6 20 1-20 67-86 (499)
490 4b4t_L 26S protease subunit RP 92.3 0.058 2E-06 51.2 2.5 18 3-20 220-237 (437)
491 3zvl_A Bifunctional polynucleo 92.3 0.05 1.7E-06 51.6 2.1 20 1-20 261-280 (416)
492 1z47_A CYSA, putative ABC-tran 92.3 0.052 1.8E-06 50.2 2.1 20 1-20 44-63 (355)
493 1sxj_E Activator 1 40 kDa subu 92.3 0.043 1.5E-06 50.5 1.6 20 1-20 39-58 (354)
494 2ce7_A Cell division protein F 92.3 0.054 1.8E-06 52.2 2.3 20 1-20 52-71 (476)
495 2gco_A H9, RHO-related GTP-bin 92.3 0.056 1.9E-06 45.3 2.2 21 1-21 28-48 (201)
496 2gza_A Type IV secretion syste 92.3 0.05 1.7E-06 50.5 2.0 20 1-20 178-197 (361)
497 2j0v_A RAC-like GTP-binding pr 92.3 0.057 1.9E-06 45.6 2.2 21 1-21 12-32 (212)
498 2bcg_Y Protein YP2, GTP-bindin 92.3 0.049 1.7E-06 45.8 1.8 21 1-21 11-31 (206)
499 2cjw_A GTP-binding protein GEM 92.2 0.055 1.9E-06 45.1 2.1 19 1-19 9-27 (192)
500 2fu5_C RAS-related protein RAB 92.2 0.033 1.1E-06 45.7 0.7 21 1-21 11-31 (183)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.3e-19 Score=169.04 Aligned_cols=223 Identities=22% Similarity=0.171 Sum_probs=157.3
Q ss_pred CceEEEEEeccCCCcccccCCC--CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDFD--SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~~--~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
..++.|.+....... ++..+. ++++.|.+.++... .++..+..++.|++|++++|.+..+|..++++.+|++
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-----ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-----CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-----chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 456667776333332 333333 67777777665542 2345566777788888888877777777777888888
Q ss_pred EEccCC-CCCccCCCCcEEEeeCCccCcc-eeeEEecc--cccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccC
Q 041097 207 LKLNIP-SLKSLPSSRKILRLSGNSQFHF-SLASLLLY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQF 281 (391)
Q Consensus 207 L~l~~~-~i~~lp~~~~~L~l~~~~l~~L-~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l 281 (391)
|++++| ....+|..++..++.+. +..+ +|+.|+++ ....+|..++++++|++|++++.. +.. +| .++.+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~----l~~-l~~~l~~l 228 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGE-HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP----LSA-LGPAIHHL 228 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCC-EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC----CCC-CCGGGGGC
T ss_pred EECCCCCCccccChhHhhccchhh-hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC----CCc-CchhhccC
Confidence 888774 44567766542222111 0111 56666666 344889999999999999998722 000 55 77888
Q ss_pred CCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEE
Q 041097 282 PPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLE 361 (391)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 361 (391)
++|+.|++++|.+....+..++.+++|+.|+++.|...+..+...+.+++|++|++++|..+..+|.+++++++|+.++
T Consensus 229 -~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 229 -PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp -TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred -CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999999999887777667889999999999996666655444557899999999999998899999999999999998
Q ss_pred eeC
Q 041097 362 LWW 364 (391)
Q Consensus 362 l~~ 364 (391)
+..
T Consensus 308 l~~ 310 (328)
T 4fcg_A 308 VPP 310 (328)
T ss_dssp CCG
T ss_pred CCH
Confidence 753
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.4e-19 Score=165.50 Aligned_cols=191 Identities=20% Similarity=0.204 Sum_probs=144.4
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------IL 224 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L 224 (391)
.+++.|.+.++... .+++.+.+++.|++|++++|.+..+|..++++.+|++|++++|.+..+|..++ +|
T Consensus 81 ~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 55666666655443 23344556777777777777777777777777777777777777777776654 55
Q ss_pred EeeCCccCcceeeEEecccccchhHHhcC---------CCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeecc
Q 041097 225 RLSGNSQFHFSLASLLLYYQSLLSKSLCR---------LSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNI 293 (391)
Q Consensus 225 ~l~~~~l~~L~L~~L~l~~~~~lp~~i~~---------l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~ 293 (391)
++++|++. ..+|..++. +++|++|++++.. . . +| .++.+ ++|+.|++++|
T Consensus 156 ~L~~n~~~------------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~--lp~~l~~l-~~L~~L~L~~N 216 (328)
T 4fcg_A 156 SIRACPEL------------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----S--LPASIANL-QNLKSLKIRNS 216 (328)
T ss_dssp EEEEETTC------------CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC----C--CCGGGGGC-TTCCEEEEESS
T ss_pred ECCCCCCc------------cccChhHhhccchhhhccCCCCCEEECcCCCcC----c--chHhhcCC-CCCCEEEccCC
Confidence 55554322 366666554 8899999988722 1 0 67 78899 99999999999
Q ss_pred cCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 294 ELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 294 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.+...+ +.++.+++|+.|+++.|...+..+...+.+++|++|++++|.....+|.++..+++|++|++++|+
T Consensus 217 ~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 217 PLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCcCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 988755 578999999999999777766555556889999999999999889999999999999999999986
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.1e-17 Score=173.52 Aligned_cols=216 Identities=19% Similarity=0.102 Sum_probs=143.1
Q ss_pred HhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccCCCCC-ccCCCCc------EEEeeCCccCcc---------e
Q 041097 173 KICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNIPSLK-SLPSSRK------ILRLSGNSQFHF---------S 235 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~~~i~-~lp~~~~------~L~l~~~~l~~L---------~ 235 (391)
..+..++.|+.|++++|.+. ..|..++.+.+|++|++++|.+. .+|..++ .|++++|++... +
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 45566666667777666665 56666666677777777776665 4555544 677777665522 6
Q ss_pred eeEEecc---cccchhHHhcCCCCCCEEEecCCC---CCC-ch-------------------------------------
Q 041097 236 LASLLLY---YQSLLSKSLCRLSCLESLKLANES---KMP-RR------------------------------------- 271 (391)
Q Consensus 236 L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~~~---~lp-~L------------------------------------- 271 (391)
|+.|+++ -...+|..++.+++|+.|++++.. .+| .+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 7777777 223577778888888888877611 111 00
Q ss_pred ----------------------hhh---cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcccc
Q 041097 272 ----------------------SNI---IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTM 325 (391)
Q Consensus 272 ----------------------~~L---lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 325 (391)
+.+ .| .++.+ ++|+.|++++|.+....+..++.+++|+.|+++.|...+..+.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccccchhhhccccccccccccceecccCchhhhcc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 000 23 45567 7899999999998877778999999999999998888876666
Q ss_pred CCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCcH---------------------------HHHHHhhhccc
Q 041097 326 GIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPEP---------------------------ELRQQLREFED 378 (391)
Q Consensus 326 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~---------------------------~l~~~~~~~~~ 378 (391)
..+.+++|+.|++++|.--..+|..++.+++|++|++++++- .+ ..|....+
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~ 753 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 753 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCcc
Confidence 668999999999998864347899999999999999885421 12 26788999
Q ss_pred cccceeecCCCC
Q 041097 379 KEQYGIQLYPYG 390 (391)
Q Consensus 379 ~~~~~i~~~~~~ 390 (391)
++|++|+|+|.+
T Consensus 754 ~~~~~~~~~~~~ 765 (768)
T 3rgz_A 754 DGYAHHQRSHHH 765 (768)
T ss_dssp ------------
T ss_pred CCCCCCCCcccc
Confidence 999999999975
No 4
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.1e-16 Score=149.27 Aligned_cols=201 Identities=21% Similarity=0.152 Sum_probs=130.1
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCCCc----EEE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSSRK----ILR 225 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~~~----~L~ 225 (391)
+.++.|.+.++... ...+..+..++.|++|++++|.+..+ |..++++.+|++|+++++.+..+|..+. .|+
T Consensus 52 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred CCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEE
Confidence 67777777655442 12224578899999999999998865 7889999999999999999998887765 999
Q ss_pred eeCCccCcc---------eeeEEecc--cc---cchhHHhcCCCCCCEEEecCCC--CCCchhhhcc-ccccCCCCccEE
Q 041097 226 LSGNSQFHF---------SLASLLLY--YQ---SLLSKSLCRLSCLESLKLANES--KMPRRSNIIL-AEYQFPPSLTHL 288 (391)
Q Consensus 226 l~~~~l~~L---------~L~~L~l~--~~---~~lp~~i~~l~~L~~L~l~~~~--~lp~L~~Llp-~~~~l~~~L~~L 288 (391)
+++|.+..+ +|+.|+++ .. ...+..++.+++|++|++++.. . +| .+ . ++|+.|
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------l~~~~--~-~~L~~L 197 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------IPQGL--P-PSLTEL 197 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------CCSSC--C-TTCSEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------CCccc--c-ccCCEE
Confidence 999987765 78888888 12 2446678888899999888722 1 22 11 2 455555
Q ss_pred EeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 289 SFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 289 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
++++|.+...++..++.+++|+.|+++.|..........+.+++|++|++++| .+..+|.++..+++|++|++++++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 55555555444445555555555555544433211112234555555555555 345555555555555555555443
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=1e-16 Score=148.44 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=137.9
Q ss_pred CceEEEEEeccCCCc--ccccCCC--CCccEEEEEe-cCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCcccCCCC
Q 041097 129 ENVKRFTAHRKLNDF--AFLDDFD--SFLHSLLYLT-SGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLF 202 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~--~~~~~~~--~~lrsl~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~ 202 (391)
.+++.+.+....... .+...+. ++++.|.+.+ .... ...+..+.+++.|++|++++|.+. .+|..++++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 456777766333222 1333333 6777777763 3221 123355677777888888777776 6777777777
Q ss_pred cccEEEccCCCCC-ccCCCCc------EEEeeCCccCcceeeEEecccccchhHHhcCCC-CCCEEEecCCCCCCchhhh
Q 041097 203 LLRYLKLNIPSLK-SLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLS-CLESLKLANESKMPRRSNI 274 (391)
Q Consensus 203 ~L~~L~l~~~~i~-~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~-~L~~L~l~~~~~lp~L~~L 274 (391)
+|++|++++|.+. .+|..+. +|++++|.+. ..+|..++.++ +|++|++++.. +...
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------------~~~p~~l~~l~~~L~~L~L~~N~----l~~~ 189 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------------GAIPDSYGSFSKLFTSMTISRNR----LTGK 189 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------------EECCGGGGCCCTTCCEEECCSSE----EEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc------------CcCCHHHhhhhhcCcEEECcCCe----eecc
Confidence 8888888777766 5665554 6666666554 36777788887 78888887611 0001
Q ss_pred cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccc-cchHhhc
Q 041097 275 IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLK-RIHEQLW 352 (391)
Q Consensus 275 lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~lp~~~~ 352 (391)
.| .+..+ + |+.|++++|.+....+..++.+++|+.|+++.|...+. ....+.+++|++|++++|. +. .+|.++.
T Consensus 190 ~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~ 265 (313)
T 1ogq_A 190 IPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNR-IYGTLPQGLT 265 (313)
T ss_dssp CCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSC-CEECCCGGGG
T ss_pred CChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-cCcccccCCCCEEECcCCc-ccCcCChHHh
Confidence 44 56666 4 88888888777666667777788888888876655432 2224566778888888774 44 6777777
Q ss_pred CCCCCCEEEeeCCc
Q 041097 353 CLKSLNKLELWWPE 366 (391)
Q Consensus 353 ~l~~L~~L~l~~~~ 366 (391)
.+++|++|++++++
T Consensus 266 ~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 266 QLKFLHSLNVSFNN 279 (313)
T ss_dssp GCTTCCEEECCSSE
T ss_pred cCcCCCEEECcCCc
Confidence 78888888877664
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=5.1e-16 Score=151.14 Aligned_cols=205 Identities=20% Similarity=0.135 Sum_probs=152.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCCc-------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSRK------- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~~------- 222 (391)
+.++.|.+.++... ...+..+..++.|+.|++++|.+..++ ..+.++.+|++|++++|.+..+|....
T Consensus 75 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 66777766655432 122355677888888888888877444 677788888888888888887776532
Q ss_pred EEEeeCCccCcc---------eeeEEecc---cccchhH-HhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEE
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY---YQSLLSK-SLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLS 289 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~---~~~~lp~-~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~ 289 (391)
+|++++|.+..+ +|+.|+++ ....++. .+.++++|++|++++.. +.. +|.+..+ ++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~----l~~-~~~~~~l-~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN----IKD-MPNLTPL-VGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC----CSS-CCCCTTC-TTCCEEE
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc----ccc-ccccccc-ccccEEE
Confidence 788888776654 67777777 3344554 57888999999988722 000 4556778 9999999
Q ss_pred eecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hcCCCCCCEEEeeCCc
Q 041097 290 FSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELWWPE 366 (391)
Q Consensus 290 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 366 (391)
+++|.+...++..+..+++|+.|+++.|............+++|+.|++++| +++.+|.. +..+++|++|+++++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9999998887788999999999999977665433333468899999999988 57888754 5889999999999866
No 7
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=2.9e-16 Score=146.61 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=113.3
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCCCc----EEE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSSRK----ILR 225 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~~~----~L~ 225 (391)
+.++.|.+.++... ...+..+..++.|++|++++|.+..+ |..++++.+|++|+++++.+..+|..+. +|+
T Consensus 54 ~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEE
T ss_pred CCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEE
Confidence 56777766554432 11224567788888888888887754 6678888888888888888887776664 788
Q ss_pred eeCCccCcc---------eeeEEecc--cc---cchhHHhcCCCCCCEEEecCCC--CC-----Cchhhh----------
Q 041097 226 LSGNSQFHF---------SLASLLLY--YQ---SLLSKSLCRLSCLESLKLANES--KM-----PRRSNI---------- 274 (391)
Q Consensus 226 l~~~~l~~L---------~L~~L~l~--~~---~~lp~~i~~l~~L~~L~l~~~~--~l-----p~L~~L---------- 274 (391)
+++|.+..+ +|+.|+++ .. ...|..++.+ +|++|++++.. .+ +.|+.|
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 887766643 56666665 11 1234444445 55555555411 11 112211
Q ss_pred cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hc
Q 041097 275 IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LW 352 (391)
Q Consensus 275 lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~ 352 (391)
.| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|... ..+...+.+++|++|+++++ .++.+|.. +.
T Consensus 209 ~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 285 (332)
T 2ft3_A 209 ELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFC 285 (332)
T ss_dssp CTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSS
T ss_pred CHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC-CCCccChhHcc
Confidence 12 34445 55555555555555444444555555555555544332 11111244555555555554 24444321 11
Q ss_pred C------CCCCCEEEeeCCc
Q 041097 353 C------LKSLNKLELWWPE 366 (391)
Q Consensus 353 ~------l~~L~~L~l~~~~ 366 (391)
. .++|+.|++.++|
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSS
T ss_pred ccccccccccccceEeecCc
Confidence 1 2445555555555
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=6.2e-16 Score=150.02 Aligned_cols=203 Identities=21% Similarity=0.124 Sum_probs=145.3
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCC-Cc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSS-RK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-~~------ 222 (391)
+.++.|.+..+... ...+..+..++.|++|++++|.+..++ ..+.++.+|++|++++|.+..+|.. +.
T Consensus 64 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 55666655544332 112245566777777777777766444 5567777777777777777766653 22
Q ss_pred EEEeeCCccCcc---------eeeEEecc---cccchhH-HhcCCCCCCEEEecCCC--CCCchhhhccccccCCCCccE
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY---YQSLLSK-SLCRLSCLESLKLANES--KMPRRSNIILAEYQFPPSLTH 287 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~---~~~~lp~-~i~~l~~L~~L~l~~~~--~lp~L~~Llp~~~~l~~~L~~ 287 (391)
.|++++|.+..+ +|+.|+++ ....++. .+.++++|++|++++.. . +|.+..+ ++|+.
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~l-~~L~~ 211 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------IPNLTPL-IKLDE 211 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-------CCCCTTC-SSCCE
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-------ccccCCC-cccCE
Confidence 777777765543 67777776 2334544 67889999999998732 2 5556778 99999
Q ss_pred EEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 288 LSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 288 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
|+|++|.+...+...+..+++|+.|+++.|............+++|+.|++++| +++.+|. .+..+++|++|+++++|
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 999999988877788999999999999977665433333468899999999988 5788875 46889999999999866
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=3.7e-16 Score=144.09 Aligned_cols=219 Identities=22% Similarity=0.185 Sum_probs=156.9
Q ss_pred cCceEEEEEeccCCCccccc-CC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcc
Q 041097 128 RENVKRFTAHRKLNDFAFLD-DF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLL 204 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~-~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L 204 (391)
+.+++++.+..+.... +.. .. + ++++.|.+.++... .....+..+..++.|++|++++|.+..+|..+..+.+|
T Consensus 27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC--EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccC--cccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 3567777776333333 332 22 3 78888877655432 00011245556888999999998888888888888899
Q ss_pred cEEEccCCCCCccCC--CCc------EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhh-hc
Q 041097 205 RYLKLNIPSLKSLPS--SRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-II 275 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~--~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~-Ll 275 (391)
++|+++++.+..+|. .+. +|++++|.+. ...|..++.+++|++|++++.. +.. .+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~----l~~~~~ 167 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------VAFNGIFNGLSSLEVLKMAGNS----FQENFL 167 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE------------ECSTTTTTTCTTCCEEECTTCE----EGGGEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCC------------ccchhhcccCcCCCEEECCCCc----cccccc
Confidence 999998888877664 222 6666666655 3456678899999999998721 111 15
Q ss_pred c-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCC
Q 041097 276 L-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 276 p-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l 354 (391)
| .+..+ ++|+.|++++|.+...++..++.+++|+.|+++.|............+++|++|++++|.--...|..+..+
T Consensus 168 ~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 168 PDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp CSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred hhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 6 77888 999999999999888766788999999999999777655333344678999999999985334456678888
Q ss_pred C-CCCEEEeeCCc
Q 041097 355 K-SLNKLELWWPE 366 (391)
Q Consensus 355 ~-~L~~L~l~~~~ 366 (391)
+ +|++|+++++|
T Consensus 247 ~~~L~~L~L~~N~ 259 (306)
T 2z66_A 247 PSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTCC
T ss_pred hccCCEEEccCCC
Confidence 4 99999998854
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=3.7e-15 Score=146.00 Aligned_cols=232 Identities=21% Similarity=0.166 Sum_probs=129.9
Q ss_pred CceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcc-cCCCCccc
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSG-IENLFLLR 205 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~-i~~l~~L~ 205 (391)
..++.|.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..+|.. ++++.+|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 456666665332222112222 2 66666666544332 11234566677777777777777766643 56777777
Q ss_pred EEEccCCCCCccCC-CCc------EEEeeCCccCcc---------eeeEEecc--cccchh-HHhcCCCCCCEEEecCCC
Q 041097 206 YLKLNIPSLKSLPS-SRK------ILRLSGNSQFHF---------SLASLLLY--YQSLLS-KSLCRLSCLESLKLANES 266 (391)
Q Consensus 206 ~L~l~~~~i~~lp~-~~~------~L~l~~~~l~~L---------~L~~L~l~--~~~~lp-~~i~~l~~L~~L~l~~~~ 266 (391)
+|++++|.+..++. .+. .|++++|.+..+ +|+.|+++ ....+| ..+..+++|+.|++.+..
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 77777777665433 222 677776655443 56666666 333444 346666666666666511
Q ss_pred -------CC---Cchhhh----------cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCc-----
Q 041097 267 -------KM---PRRSNI----------IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYS----- 320 (391)
Q Consensus 267 -------~l---p~L~~L----------lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----- 320 (391)
.+ +.|+.| +| ..... .+|+.|++++|.+...+...++.+++|+.|+++.|...
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 11 222222 22 22233 45666666666655555455566666666666644332
Q ss_pred -------------------CccccCCCcccccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 321 -------------------EERTMGIRAMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 321 -------------------~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
...+.....+++|+.|++++| .++.+|. .+..+++|++|+++++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 111122346678888888877 4677765 45778888888887654
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.3e-15 Score=139.51 Aligned_cols=178 Identities=21% Similarity=0.164 Sum_probs=139.7
Q ss_pred CcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCCCc-----EEEeeCCccCcceeeEEecccccchhHHhc
Q 041097 179 KFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSSRK-----ILRLSGNSQFHFSLASLLLYYQSLLSKSLC 252 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~~~-----~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~ 252 (391)
+.+++|++++|.+..+ +..+..+.+|++|+++++.+..+|..-. +|++++|.+. .+|..+.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-------------~l~~~~~ 97 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-------------SLPLLGQ 97 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-------------SCCCCTT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-------------cCchhhc
Confidence 5788899999988854 4678888999999999988887765422 7777777776 8898899
Q ss_pred CCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCccc
Q 041097 253 RLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMP 331 (391)
Q Consensus 253 ~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (391)
.+++|++|++++.. +..+.| .+..+ ++|+.|++++|.+...+...+..+++|+.|+++.|.......-....++
T Consensus 98 ~l~~L~~L~l~~N~----l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 98 TLPALTVLDVSFNR----LTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp TCTTCCEEECCSSC----CCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred cCCCCCEEECCCCc----CcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 99999999999822 111123 57889 9999999999999888877889999999999997766532211125689
Q ss_pred ccceeeeccccccccchHhhcCCCCCCEEEeeCCc-------HHHHHHhhh
Q 041097 332 KLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE-------PELRQQLRE 375 (391)
Q Consensus 332 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~-------~~l~~~~~~ 375 (391)
+|+.|+++++ .++.+|.++...++|++|++.++| ..+.+|+++
T Consensus 173 ~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 173 NLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred CCCEEECCCC-cCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 9999999988 589999999999999999999765 124566654
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=1.8e-15 Score=147.12 Aligned_cols=87 Identities=25% Similarity=0.241 Sum_probs=67.1
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hcCCC
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LWCLK 355 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~ 355 (391)
.+..+ ++|+.|++++|.+...++..++.+++|+.|+++.|...+..+...+.+++|++|++++| .++.+|.. +..++
T Consensus 318 ~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 318 AFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred HhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 66777 88888888888877766677888888888888866654433334468899999999987 57788754 58899
Q ss_pred CCCEEEeeCC
Q 041097 356 SLNKLELWWP 365 (391)
Q Consensus 356 ~L~~L~l~~~ 365 (391)
+|++|+++++
T Consensus 396 ~L~~L~l~~N 405 (455)
T 3v47_A 396 SLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEEccCC
Confidence 9999999863
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=6.6e-16 Score=155.84 Aligned_cols=204 Identities=19% Similarity=0.090 Sum_probs=145.1
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC---CcccCCCCcccEEEccCCCCCccCCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY---PSGIENLFLLRYLKLNIPSLKSLPSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---p~~i~~l~~L~~L~l~~~~i~~lp~~~~----- 222 (391)
+.++.+.+..+... ....+..++.|+.|++++|.+... |..++.+.+|++|+++++.+..+|..+.
T Consensus 328 ~~L~~L~l~~n~~~------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 328 PFLKSLTLTMNKGS------ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp SSCCEEEEESCSSC------EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred CccceeeccCCcCc------cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCC
Confidence 55555555544221 011344667777777777776633 6667777777777777777776665554
Q ss_pred -EEEeeCCccCcc----------eeeEEecc---cccchhHHhcCCCCCCEEEecCCCCCCchhh-hcc-ccccCCCCcc
Q 041097 223 -ILRLSGNSQFHF----------SLASLLLY---YQSLLSKSLCRLSCLESLKLANESKMPRRSN-IIL-AEYQFPPSLT 286 (391)
Q Consensus 223 -~L~l~~~~l~~L----------~L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~-Llp-~~~~l~~~L~ 286 (391)
.|++++|.+... +|+.|+++ .....|..++.+++|++|++++.. +.. .+| .++.+ ++|+
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~~l-~~L~ 476 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS----FKDNTLSNVFANT-TNLT 476 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE----EGGGEECSCCTTC-TTCC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc----CCCcchHHhhccC-CCCC
Confidence 777777644322 67777776 122356677788888888887611 111 146 77889 9999
Q ss_pred EEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCC-CCCEEEeeCC
Q 041097 287 HLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLK-SLNKLELWWP 365 (391)
Q Consensus 287 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~ 365 (391)
.|++++|.+...++..++.+++|+.|+++.|...+..+...+.+++|+.|++++|. ++.+|.++..++ +|++|+++++
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 99999999888777789999999999999777665444445789999999999884 889999999997 5999999874
Q ss_pred c
Q 041097 366 E 366 (391)
Q Consensus 366 ~ 366 (391)
|
T Consensus 556 ~ 556 (606)
T 3vq2_A 556 S 556 (606)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=2e-15 Score=143.96 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=44.7
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCC
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKS 356 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 356 (391)
++..+ ++|+.|++++|.+...++..++.+++|+.|+++.|.... .....+.+++|++|++++| .+..+|.++..+++
T Consensus 243 ~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 243 WLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 319 (390)
T ss_dssp GGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT
T ss_pred HHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC-cceecCccccccCc
Confidence 44455 566666666665555444555566666666666443322 1112234556666666655 35555555544555
Q ss_pred CCEEEeeCC
Q 041097 357 LNKLELWWP 365 (391)
Q Consensus 357 L~~L~l~~~ 365 (391)
|++|+++++
T Consensus 320 L~~L~L~~N 328 (390)
T 3o6n_A 320 LENLYLDHN 328 (390)
T ss_dssp CSEEECCSS
T ss_pred CCEEECCCC
Confidence 555555444
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2e-15 Score=137.78 Aligned_cols=192 Identities=23% Similarity=0.214 Sum_probs=145.4
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcccEEEccCCC-CCcc-CCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPS-LKSL-PSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~-i~~l-p~~~~----- 222 (391)
+.++.|.+.+.... ...+..+..++.|++|+++++.+..+ |..++.+.+|++|+++++. +..+ |..+.
T Consensus 32 ~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 66777766554432 11224567888899999999888855 6788888999999999886 7776 33333
Q ss_pred -EEEeeCCccCcceeeEEecccccch-hHHhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCC
Q 041097 223 -ILRLSGNSQFHFSLASLLLYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDD 298 (391)
Q Consensus 223 -~L~l~~~~l~~L~L~~L~l~~~~~l-p~~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~ 298 (391)
+|++++|.+. .+ |..++++++|++|++++.. +.. +| .++.+ ++|+.|++++|.+...
T Consensus 108 ~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~----l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 108 HTLHLDRCGLQ-------------ELGPGLFRGLAALQYLYLQDNA----LQA-LPDDTFRDL-GNLTHLFLHGNRISSV 168 (285)
T ss_dssp CEEECTTSCCC-------------CCCTTTTTTCTTCCEEECCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred CEEECCCCcCC-------------EECHhHhhCCcCCCEEECCCCc----ccc-cCHhHhccC-CCccEEECCCCccccc
Confidence 6777777666 44 6678999999999998722 011 33 47788 9999999999998877
Q ss_pred ChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccch-HhhcCCCCCCEEEeeCCc
Q 041097 299 PIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 299 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 366 (391)
+...+..+++|+.|+++.|......+...+.+++|+.|++++| .++.+| ..+..+++|++|+++++|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 7667899999999999977665543334578899999999988 477776 458999999999999864
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2.2e-15 Score=151.89 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=40.4
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCC
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKS 356 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 356 (391)
+++.+ ++|+.|++++|.+...++..++.+++|+.|+++.|...+ .+...+.+++|+.|++++| .+..+|.++..+++
T Consensus 249 ~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 249 WLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 325 (597)
T ss_dssp GGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT
T ss_pred hhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC-CCCccCcccccCCC
Confidence 34445 555555555555554444455555555555555443332 1112234555555555554 24455544444444
Q ss_pred CCEEEeeC
Q 041097 357 LNKLELWW 364 (391)
Q Consensus 357 L~~L~l~~ 364 (391)
|++|++++
T Consensus 326 L~~L~L~~ 333 (597)
T 3oja_B 326 LENLYLDH 333 (597)
T ss_dssp CSEEECCS
T ss_pred CCEEECCC
Confidence 44444433
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=7.1e-15 Score=133.03 Aligned_cols=169 Identities=27% Similarity=0.272 Sum_probs=127.0
Q ss_pred CcccEEEcCCCccccCCc-ccCCCCcccEEEccCCCCCccCCCCc-------EEEeeCCccCcceeeEEecccccchhH-
Q 041097 179 KFLRVLDLGSLVLIRYPS-GIENLFLLRYLKLNIPSLKSLPSSRK-------ILRLSGNSQFHFSLASLLLYYQSLLSK- 249 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~l~~~~i~~lp~~~~-------~L~l~~~~l~~L~L~~L~l~~~~~lp~- 249 (391)
..++.|+++++.+..+|. .++++.+|++|+++++.+..+|..+. +|++++|.+. .+|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~ 103 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-------------ALPIG 103 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-------------CCCTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-------------cCCHh
Confidence 467788888888776654 67778888888888888777776542 6666666666 5553
Q ss_pred HhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC
Q 041097 250 SLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR 328 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 328 (391)
.+..+++|++|++++.. +..+.| .++.+ ++|+.|++++|.+...+...++.+++|+.|+++.|...........
T Consensus 104 ~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQ----LKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178 (270)
T ss_dssp TTTTCSSCCEEECCSSC----CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred HcccccCCCEEECCCCc----cCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence 56889999999998722 011023 56788 9999999999998887777789999999999996665543222245
Q ss_pred cccccceeeeccccccccchHh-hcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 366 (391)
.+++|++|++++| .++.+|.. +..+++|++|+++++|
T Consensus 179 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 179 KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 7889999999988 57888764 7889999999998865
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=1.3e-14 Score=136.11 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=49.5
Q ss_pred cccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCC
Q 041097 278 EYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSL 357 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L 357 (391)
+..+ ++|+.|++++|.+.. .+.+..+++|+.|+++.|..... ...+.+++|++|++++|.--...|..++.+++|
T Consensus 239 ~~~l-~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 LANL-SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp GTTC-TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred hhcC-CCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 4455 666666666665544 24556666666666664443331 223456677777777664323345566677777
Q ss_pred CEEEeeCCc
Q 041097 358 NKLELWWPE 366 (391)
Q Consensus 358 ~~L~l~~~~ 366 (391)
++|++++|+
T Consensus 314 ~~L~L~~n~ 322 (347)
T 4fmz_A 314 TTLFLSQNH 322 (347)
T ss_dssp SEEECCSSS
T ss_pred CEEEccCCc
Confidence 777777665
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=5.3e-15 Score=138.70 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=70.4
Q ss_pred ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCC
Q 041097 275 ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 275 lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l 354 (391)
++.+..+ ++|+.|++++|.+... +.+..+++|+.|+++.|......+...+.+++|++|++++|. +..++. +..+
T Consensus 258 ~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l 332 (347)
T 4fmz_A 258 INAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASL 332 (347)
T ss_dssp CGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGC
T ss_pred ChhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhh
Confidence 3456778 9999999999988774 678999999999999666544332233678999999999996 777776 8899
Q ss_pred CCCCEEEeeCCc
Q 041097 355 KSLNKLELWWPE 366 (391)
Q Consensus 355 ~~L~~L~l~~~~ 366 (391)
++|++|++++|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 999999999987
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=5.7e-16 Score=143.45 Aligned_cols=216 Identities=14% Similarity=0.044 Sum_probs=158.8
Q ss_pred ccCceEEEEEec-cCCCcccccCCC--CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCcccCCCC
Q 041097 127 LRENVKRFTAHR-KLNDFAFLDDFD--SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLF 202 (391)
Q Consensus 127 ~~~~~r~l~~~~-~~~~~~~~~~~~--~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~ 202 (391)
.....+.|.+.. +......+..+. ++++.|.+..+... ...+..+.+++.|++|++++|.+. .+|..++++.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 345678888761 332222333343 89999998876542 124467889999999999999998 8899999999
Q ss_pred cccEEEccCCCCC-ccCCCCc-------EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhh
Q 041097 203 LLRYLKLNIPSLK-SLPSSRK-------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNI 274 (391)
Q Consensus 203 ~L~~L~l~~~~i~-~lp~~~~-------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~L 274 (391)
+|++|++++|.+. .+|..++ .|++++|.+. ..+|..++.++ |++|++++.. +...
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~------------~~~~~~~~~l~-L~~L~Ls~N~----l~~~ 212 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT------------GKIPPTFANLN-LAFVDLSRNM----LEGD 212 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE------------EECCGGGGGCC-CSEEECCSSE----EEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee------------ccCChHHhCCc-ccEEECcCCc----ccCc
Confidence 9999999999988 6776554 6777777665 46778888887 9999888721 1111
Q ss_pred cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcC
Q 041097 275 IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWC 353 (391)
Q Consensus 275 lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~ 353 (391)
.| .+..+ ++|+.|++++|.+...+ +.+..+++|++|+++.|...+..+...+.+++|++|++++|.--..+|.. +.
T Consensus 213 ~~~~~~~l-~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 213 ASVLFGSD-KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CGGGCCTT-SCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred CCHHHhcC-CCCCEEECCCCceeeec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 45 67778 88999999988876544 44778889999999877665544444567888999999888532367755 78
Q ss_pred CCCCCEEEeeCCc
Q 041097 354 LKSLNKLELWWPE 366 (391)
Q Consensus 354 l~~L~~L~l~~~~ 366 (391)
+++|+.+++.++|
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 8888888888877
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=3.7e-15 Score=137.63 Aligned_cols=180 Identities=21% Similarity=0.191 Sum_probs=138.9
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------IL 224 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L 224 (391)
++++.|.+.++... .+ +.+..++.|++|++++|.+..++. +..+.+|++|+++++.+..+|. +. .|
T Consensus 41 ~~L~~L~l~~~~i~-----~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-----TI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-IAGLQSIKTL 112 (308)
T ss_dssp HTCCEEECTTSCCC-----CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEE
T ss_pred CCcCEEEeeCCCcc-----Cc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchh-hcCCCCCCEE
Confidence 66777776655443 12 356788999999999999887777 8899999999999998887763 32 77
Q ss_pred EeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCC--CCCchhhhccccccCCCCccEEEeecccCCCCChhh
Q 041097 225 RLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANES--KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPA 302 (391)
Q Consensus 225 ~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~--~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~ 302 (391)
++++|.+. .++. ++.+++|++|++++.. . +|.+..+ ++|+.|++++|.+...+ .
T Consensus 113 ~l~~n~l~-------------~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l~~l-~~L~~L~l~~n~l~~~~--~ 168 (308)
T 1h6u_A 113 DLTSTQIT-------------DVTP-LAGLSNLQVLYLDLNQITN-------ISPLAGL-TNLQYLSIGNAQVSDLT--P 168 (308)
T ss_dssp ECTTSCCC-------------CCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGC-TTCCEEECCSSCCCCCG--G
T ss_pred ECCCCCCC-------------Cchh-hcCCCCCCEEECCCCccCc-------CccccCC-CCccEEEccCCcCCCCh--h
Confidence 77777766 6654 8899999999998722 1 3346678 99999999999877644 3
Q ss_pred hcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 303 LEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 303 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+..+++|+.|+++.|..... .....+++|++|++++| .+..+| .+..+++|++|++++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcC--hhhcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe
Confidence 88999999999997765542 23567889999999988 477887 48899999999998766
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=5.5e-15 Score=149.98 Aligned_cols=227 Identities=12% Similarity=0.098 Sum_probs=138.2
Q ss_pred cCceEEEEEeccCCCcccccCCC--CCccEEEEEecC-CcCCCchhhHHhhccC------CcccEEEcCCCccccCCc--
Q 041097 128 RENVKRFTAHRKLNDFAFLDDFD--SFLHSLLYLTSG-SQYLDPTYCEKICKMF------KFLRVLDLGSLVLIRYPS-- 196 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~~--~~lrsl~~~~~~-~~~~~~~~~~~~~~~~------~~L~~L~l~~~~l~~~p~-- 196 (391)
..+.+.|.+..+.....++..+. ++++.|.+..+. .. ...++..+..+ +.|++|++++|.+..+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 45677888873332322444443 788888776654 31 21244555554 899999999999999998
Q ss_pred ccCCCCcccEEEccCCCCC-ccCCCCc------EEEeeCCccCcc--------e-eeEEecc--cccchhHHhcCCC--C
Q 041097 197 GIENLFLLRYLKLNIPSLK-SLPSSRK------ILRLSGNSQFHF--------S-LASLLLY--YQSLLSKSLCRLS--C 256 (391)
Q Consensus 197 ~i~~l~~L~~L~l~~~~i~-~lp~~~~------~L~l~~~~l~~L--------~-L~~L~l~--~~~~lp~~i~~l~--~ 256 (391)
.++++.+|++|++++|.+. .+| .++ .|++++|.+..+ + |+.|+++ ....+|..++.++ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 8999999999999999998 888 665 888888876654 5 8888888 4557777776655 7
Q ss_pred CCEEEecCCCCCCchhhhcc-ccc-------cCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcC-------
Q 041097 257 LESLKLANESKMPRRSNIIL-AEY-------QFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSE------- 321 (391)
Q Consensus 257 L~~L~l~~~~~lp~L~~Llp-~~~-------~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------- 321 (391)
|++|++++.. +....| .+. .+ ++|+.|++++|.+...+...+..+++|+.|+++.|....
T Consensus 404 L~~L~Ls~N~----l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 404 MSAIDFSYNE----IGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp EEEEECCSSC----TTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred cCEEECcCCc----CCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 8888887611 000022 222 33 455555555555444443334445555555554333220
Q ss_pred -----------------------ccccCCC--cccccceeeeccccccccchHhhcCCCCCCEEEeeC
Q 041097 322 -----------------------ERTMGIR--AMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWW 364 (391)
Q Consensus 322 -----------------------~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 364 (391)
..+.... .+++|+.|++++| .++.+|.++..+++|++|++++
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCS
T ss_pred cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCC
Confidence 1111112 4556666666655 3445565565666666666643
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=4.2e-15 Score=141.82 Aligned_cols=226 Identities=19% Similarity=0.096 Sum_probs=140.8
Q ss_pred CceEEEEEeccCCCcccccC-C-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcc
Q 041097 129 ENVKRFTAHRKLNDFAFLDD-F-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLL 204 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~-~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L 204 (391)
.+.+.+.+....... ++.. . . ++++.|.+.++... ...+..+..++.|++|++++|.+..++ ..++++.+|
T Consensus 45 ~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhh-CChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 456666666222222 2221 1 2 56666666544332 112235666777777777777777554 446777777
Q ss_pred cEEEccCCCCCccCCCC-c------EEEeeCCccCcc---------eeeEEecc--cccchhHHhcCCCCCCEEEecCCC
Q 041097 205 RYLKLNIPSLKSLPSSR-K------ILRLSGNSQFHF---------SLASLLLY--YQSLLSKSLCRLSCLESLKLANES 266 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~~~-~------~L~l~~~~l~~L---------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~ 266 (391)
++|+++++.+..+|..+ . +|++++|.+..+ +|+.|+++ ....+ .++.+++|++|++.+..
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence 77777777777777654 2 777777765533 45555555 22222 13444555555554411
Q ss_pred -----CCCchhhh---------ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccc
Q 041097 267 -----KMPRRSNI---------ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPK 332 (391)
Q Consensus 267 -----~lp~L~~L---------lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (391)
..+.++.| +| .... ++|+.|++++|.+.. .+.++.+++|+.|+++.|...+..+...+.+++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVR-GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEE-CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccCCCCcceEEECCCCeeeecc-cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 01122222 22 1123 688899998888766 367899999999999977665433334478899
Q ss_pred cceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 333 LECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 333 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
|++|++++| .++.+|..+..+++|++|+++++.
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 274 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCcccCcccCCCCCCCEEECCCCc
Confidence 999999988 588899888899999999999875
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=1.7e-15 Score=157.13 Aligned_cols=195 Identities=22% Similarity=0.192 Sum_probs=141.4
Q ss_pred hHHhhccCCcccEEEcCCCccc-cCCcc-cCCCCcccEEEccCCCCC-ccCCCCc-------EEEeeCCccCc-------
Q 041097 171 CEKICKMFKFLRVLDLGSLVLI-RYPSG-IENLFLLRYLKLNIPSLK-SLPSSRK-------ILRLSGNSQFH------- 233 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~-~~p~~-i~~l~~L~~L~l~~~~i~-~lp~~~~-------~L~l~~~~l~~------- 233 (391)
.+..+..++.|++|++++|.+. .+|.. ++++.+|++|++++|.+. .+|..+. +|++++|.+..
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 3356677888888888888876 77765 788888888888888776 5665443 78888776542
Q ss_pred ---c-eeeEEecc---cccchhHHhcCCCCCCEEEecCCC---C-------CCchhhh----------cc-ccccCCCCc
Q 041097 234 ---F-SLASLLLY---YQSLLSKSLCRLSCLESLKLANES---K-------MPRRSNI----------IL-AEYQFPPSL 285 (391)
Q Consensus 234 ---L-~L~~L~l~---~~~~lp~~i~~l~~L~~L~l~~~~---~-------lp~L~~L----------lp-~~~~l~~~L 285 (391)
+ +|+.|+++ -...+|..++++++|++|++++.. . ++.|+.| +| .++.+ ++|
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L 468 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTL 468 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCc
Confidence 1 57777777 223567777778888888777611 1 1222222 56 67777 888
Q ss_pred cEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCC
Q 041097 286 THLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 286 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 365 (391)
+.|++++|.+....+..++.+++|++|+++.|...+..+...+.+++|++|++++|.-...+|.+++.+++|++|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 88888888887666678888888999988877666554444578889999999988644478888999999999999865
Q ss_pred c
Q 041097 366 E 366 (391)
Q Consensus 366 ~ 366 (391)
+
T Consensus 549 ~ 549 (768)
T 3rgz_A 549 L 549 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=6e-15 Score=153.42 Aligned_cols=188 Identities=17% Similarity=0.118 Sum_probs=99.8
Q ss_pred hhccCCcccEEEcCCCccccCCcccCCCCc-ccEEEccCCCCCccCCCCc--------EEEeeCCccCcc----------
Q 041097 174 ICKMFKFLRVLDLGSLVLIRYPSGIENLFL-LRYLKLNIPSLKSLPSSRK--------ILRLSGNSQFHF---------- 234 (391)
Q Consensus 174 ~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~-L~~L~l~~~~i~~lp~~~~--------~L~l~~~~l~~L---------- 234 (391)
.+..++.|+.|++++|.+..+|..+.++.+ |++|++++|.+..+|..+. .|++++|.+...
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 344455555555555555555555555555 5555555555555554432 455555544211
Q ss_pred ----eeeEEecc--cccchhHHhc-CCCCCCEEEecCCC--CCC---------------chhhh---------cc-ccc-
Q 041097 235 ----SLASLLLY--YQSLLSKSLC-RLSCLESLKLANES--KMP---------------RRSNI---------IL-AEY- 279 (391)
Q Consensus 235 ----~L~~L~l~--~~~~lp~~i~-~l~~L~~L~l~~~~--~lp---------------~L~~L---------lp-~~~- 279 (391)
+|+.|+++ ....+|..+. .+++|+.|++++.. .+| +|+.| +| .+.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 46666666 4446666554 77888888887621 111 22222 44 443
Q ss_pred -cCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCC------CCcCccccCCCcccccceeeeccccccccchHhhc
Q 041097 280 -QFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQN------LYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLW 352 (391)
Q Consensus 280 -~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~------~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 352 (391)
.+ ++|+.|+|++|.+... +..++.+++|+.|+++.| ...+..+...+.+++|+.|++++|. +..+|..+.
T Consensus 750 ~~l-~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 750 TTL-PYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp TTC-TTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred ccC-CCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc
Confidence 55 5666666666655543 244556666666666532 1222212223456666666666653 466665543
Q ss_pred CCCCCCEEEeeCCc
Q 041097 353 CLKSLNKLELWWPE 366 (391)
Q Consensus 353 ~l~~L~~L~l~~~~ 366 (391)
++|+.|++++||
T Consensus 827 --~~L~~LdLs~N~ 838 (876)
T 4ecn_A 827 --PQLYILDIADNP 838 (876)
T ss_dssp --SSSCEEECCSCT
T ss_pred --CCCCEEECCCCC
Confidence 466666666665
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-15 Score=150.01 Aligned_cols=202 Identities=18% Similarity=0.113 Sum_probs=150.5
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC--CcEEEeeC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS--RKILRLSG 228 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~--~~~L~l~~ 228 (391)
++++.|.+.++.... ..+..+..++.|++|++++|.+...+. ++.+.+|++|++++|.+..+|.. +.+|++++
T Consensus 34 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCC----CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCccEEEeeCCcCCC----CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence 467777776655431 233567888889999999888875554 88888999999998888877644 33888888
Q ss_pred CccCcc------eeeEEecc--cccch-hHHhcCCCCCCEEEecCCCCCCchhhhcc-ccc-cCCCCccEEEeecccCCC
Q 041097 229 NSQFHF------SLASLLLY--YQSLL-SKSLCRLSCLESLKLANESKMPRRSNIIL-AEY-QFPPSLTHLSFSNIELMD 297 (391)
Q Consensus 229 ~~l~~L------~L~~L~l~--~~~~l-p~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~-~l~~~L~~L~l~~~~~~~ 297 (391)
|.+..+ +|+.|+++ ....+ |..++.+++|++|++++.. +....| .+. .+ ++|+.|+|++|.+..
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~~l-~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASS-DTLEHLNLQYNFIYD 183 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC----CCEEEGGGGGGGT-TTCCEEECTTSCCCE
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC----CCCcChHHHhhhC-CcccEEecCCCcccc
Confidence 877765 78888888 33344 5578889999999998722 111134 443 68 899999999998776
Q ss_pred CChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 298 DPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 298 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
. +....+++|+.|+++.|...+ .+...+.+++|+.|++++| .+..+|.++..+++|+.|++++++
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 184 V--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp E--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred c--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 4 344568999999999776654 2333567889999999987 578899999999999999998876
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=6.4e-15 Score=148.43 Aligned_cols=205 Identities=20% Similarity=0.113 Sum_probs=127.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCc-ccCCCCcccEEEccCCCCCccCCCC-c------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPS-GIENLFLLRYLKLNIPSLKSLPSSR-K------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~l~~~~i~~lp~~~-~------ 222 (391)
+.++.|.+.++... ...+..+..++.|++|++++|.+..+|. .++++.+|++|++++|.+..+|..+ +
T Consensus 75 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 55666655444322 1122355666677777777777665443 3566777777777777776666554 2
Q ss_pred EEEeeCCccCcc---------eeeEEecc--cccchhHHhcCCCCCCEEEecCCC-----CCCchhhh---------ccc
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY--YQSLLSKSLCRLSCLESLKLANES-----KMPRRSNI---------ILA 277 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~-----~lp~L~~L---------lp~ 277 (391)
+|++++|.+..+ +|+.|+++ ....++ ++.+++|++|++++.. ..+.|+.| +|
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~- 227 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR- 227 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE-
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc-
Confidence 666666655532 44444444 112221 2334444444443310 00112211 12
Q ss_pred cccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCC
Q 041097 278 EYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSL 357 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L 357 (391)
+..+++|+.|++++|.+.. ++.++.+++|+.|+++.|...+..+...+.+++|+.|++++| .+..+|..+..+++|
T Consensus 228 -~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L 303 (597)
T 3oja_B 228 -GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTL 303 (597)
T ss_dssp -CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTC
T ss_pred -cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCC
Confidence 1112678888888888766 477899999999999977766544444578999999999987 588899888889999
Q ss_pred CEEEeeCCc
Q 041097 358 NKLELWWPE 366 (391)
Q Consensus 358 ~~L~l~~~~ 366 (391)
++|++++|+
T Consensus 304 ~~L~Ls~N~ 312 (597)
T 3oja_B 304 KVLDLSHNH 312 (597)
T ss_dssp CEEECCSSC
T ss_pred cEEECCCCC
Confidence 999999875
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=2.2e-14 Score=140.11 Aligned_cols=221 Identities=22% Similarity=0.198 Sum_probs=109.9
Q ss_pred CceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYL 207 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L 207 (391)
..++.+.+....... +..... ++++.|.+.++... ..++ +..++.|++|++++|.+..++. ++++.+|++|
T Consensus 46 ~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~-----~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT-----DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccC-----Cchh-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 345566555222222 222222 56666665544432 1212 5666777777777776665554 6667777777
Q ss_pred EccCCCCCccCCCCc------EEEeeCCccCcc-------eeeEEecc-cccchhHHhcCCCCCCEEEecCCC--C----
Q 041097 208 KLNIPSLKSLPSSRK------ILRLSGNSQFHF-------SLASLLLY-YQSLLSKSLCRLSCLESLKLANES--K---- 267 (391)
Q Consensus 208 ~l~~~~i~~lp~~~~------~L~l~~~~l~~L-------~L~~L~l~-~~~~lp~~i~~l~~L~~L~l~~~~--~---- 267 (391)
+++++.+..+|. +. +|++++|.+..+ +|+.|++. ....++ .++++++|++|++++.. .
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCChhh
Confidence 777766666553 22 666666644432 44444444 111111 13444444444443311 0
Q ss_pred ------------------------CCchhhh---------ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEc
Q 041097 268 ------------------------MPRRSNI---------ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKL 314 (391)
Q Consensus 268 ------------------------lp~L~~L---------lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 314 (391)
++.|+.| ++.+..+ ++|+.|++++|.+...+ .++.+++|+.|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLA--PLSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccch--hhhcCCCCCEEEC
Confidence 0111111 2233344 45555555555444322 2455555555555
Q ss_pred CCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 315 KQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.|...+. ...+.+++|++|++++| .++.+|. +..+++|++|++++|.
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 273 GANQISNI--SPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC
T ss_pred CCCccCcc--ccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc
Confidence 54433321 11345666777777766 3555554 6667777777777664
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=3.7e-15 Score=151.20 Aligned_cols=188 Identities=19% Similarity=0.173 Sum_probs=122.8
Q ss_pred hhccCCcccEEEcCCCccccCCcccCCCCc-ccEEEccCCCCCccCCCCc--------EEEeeCCccCcc----------
Q 041097 174 ICKMFKFLRVLDLGSLVLIRYPSGIENLFL-LRYLKLNIPSLKSLPSSRK--------ILRLSGNSQFHF---------- 234 (391)
Q Consensus 174 ~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~-L~~L~l~~~~i~~lp~~~~--------~L~l~~~~l~~L---------- 234 (391)
.+..++.|++|++++|.+..+|..++.+.+ |++|++++|.+..+|..+. .|++++|.+...
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 556667777777777777777777777777 8888888888777776543 778887765431
Q ss_pred ------eeeEEecc--cccchhHHh-cCCCCCCEEEecCCC--CCC---------------chhhh---------cc-cc
Q 041097 235 ------SLASLLLY--YQSLLSKSL-CRLSCLESLKLANES--KMP---------------RRSNI---------IL-AE 278 (391)
Q Consensus 235 ------~L~~L~l~--~~~~lp~~i-~~l~~L~~L~l~~~~--~lp---------------~L~~L---------lp-~~ 278 (391)
+|+.|+++ ....+|..+ ..+++|++|++++.. .+| .|+.| +| .+
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 67888887 455677654 458888888887721 111 23333 55 44
Q ss_pred c--cCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCC------CCCcCccccCCCcccccceeeeccccccccchHh
Q 041097 279 Y--QFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQ------NLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ 350 (391)
Q Consensus 279 ~--~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 350 (391)
. .+ ++|+.|++++|.+... +..++.+++|+.|+++. |...+..+...+.+++|++|++++|. +..+|..
T Consensus 508 ~~~~l-~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 508 RATTL-PYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp STTTC-TTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred hhccC-CCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence 4 66 7777777777776663 35666777777777743 22222222233567777777777764 5777766
Q ss_pred hcCCCCCCEEEeeCCc
Q 041097 351 LWCLKSLNKLELWWPE 366 (391)
Q Consensus 351 ~~~l~~L~~L~l~~~~ 366 (391)
+. ++|++|+++++|
T Consensus 585 ~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 IT--PNISVLDIKDNP 598 (636)
T ss_dssp CC--TTCCEEECCSCT
T ss_pred Hh--CcCCEEECcCCC
Confidence 54 677777777775
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.7e-15 Score=140.42 Aligned_cols=202 Identities=18% Similarity=0.115 Sum_probs=140.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC--CcEEEeeC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS--RKILRLSG 228 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~--~~~L~l~~ 228 (391)
++++.|.+.++... ...+..+..++.|++|++++|.+...+. +..+.+|++|++++|.+..+|.. +.+|++++
T Consensus 34 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 34 WNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp GGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 45666666554432 1233567788888888888888775554 78888888888888887766533 33888888
Q ss_pred CccCcc------eeeEEecc--cccchh-HHhcCCCCCCEEEecCCCCCCchhhhcc-cc-ccCCCCccEEEeecccCCC
Q 041097 229 NSQFHF------SLASLLLY--YQSLLS-KSLCRLSCLESLKLANESKMPRRSNIIL-AE-YQFPPSLTHLSFSNIELMD 297 (391)
Q Consensus 229 ~~l~~L------~L~~L~l~--~~~~lp-~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~-~~l~~~L~~L~l~~~~~~~ 297 (391)
|.+..+ +|+.|+++ ....++ ..++.+++|++|++++.. +..+.| .+ ..+ ++|+.|++++|.+..
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~l-~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASS-DTLEHLNLQYNFIYD 183 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC----CCEEEGGGGGGGT-TTCCEEECTTSCCCE
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC----CCcccHHHHhhcc-CcCCEEECCCCcCcc
Confidence 877665 68888887 444454 367788888888888722 011122 33 467 888999998888765
Q ss_pred CChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 298 DPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 298 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
. +....+++|+.|+++.|.... .+.....+++|++|++++| .++.+|..+..+++|++|++++++
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 V--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp E--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred c--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 3 334458889999998665543 2223467788999999887 578888888888899999988776
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=140.41 Aligned_cols=205 Identities=22% Similarity=0.202 Sum_probs=147.6
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCCCc-------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSSRK------- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~~~------- 222 (391)
..++.|.+.++... ...+..+..++.|++|++++|.+..+ |..++++.+|++|+++++.+..+|....
T Consensus 32 ~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 67888877665543 12235678899999999999998855 7889999999999999999999987542
Q ss_pred EEEeeCCccCcc---------eeeEEecc--cccch-hHHhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEE
Q 041097 223 ILRLSGNSQFHF---------SLASLLLY--YQSLL-SKSLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHL 288 (391)
Q Consensus 223 ~L~l~~~~l~~L---------~L~~L~l~--~~~~l-p~~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L 288 (391)
+|++++|.+..+ +|+.|+++ ....+ |..++.+++|++|++.+.. +.. +| .+..+ ++|+.|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~-~~~~~l~~l-~~L~~L 181 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN----LTS-IPTEALSHL-HGLIVL 181 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC----CSS-CCHHHHTTC-TTCCEE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc----Ccc-cChhHhccc-CCCcEE
Confidence 899999877643 67777776 22222 3456677777777776622 000 23 45667 788888
Q ss_pred EeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccch-HhhcCCCCCCEEEeeCCc
Q 041097 289 SFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 289 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 366 (391)
++.+|.+...+...+..+++|+.|+++.|...+..........+|++|++++| +++.+| ..+..+++|++|++++++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc
Confidence 88887776665566777888888888755544433333344558899999887 477887 467889999999998875
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.60 E-value=1.1e-14 Score=141.67 Aligned_cols=234 Identities=18% Similarity=0.141 Sum_probs=150.4
Q ss_pred cCceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcc
Q 041097 128 RENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLL 204 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L 204 (391)
+..++.|.+..+.......... + ++++.|.+..+... ....+..+..++.|++|++++|.+... |..++++.+|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 4678888887443333223333 3 88888887665431 112345678899999999999998854 7889999999
Q ss_pred cEEEccCCCCCc-cCCC--Cc------EEEeeCCccCcc----------eeeEEecc--cccc-hhHHh-----------
Q 041097 205 RYLKLNIPSLKS-LPSS--RK------ILRLSGNSQFHF----------SLASLLLY--YQSL-LSKSL----------- 251 (391)
Q Consensus 205 ~~L~l~~~~i~~-lp~~--~~------~L~l~~~~l~~L----------~L~~L~l~--~~~~-lp~~i----------- 251 (391)
++|++++|.+.. .|.. +. +|++++|.+..+ +|+.|+++ .... .|..+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999999998874 3322 22 888888865543 56666666 1111 12112
Q ss_pred -----------------------cCCCCCCEEEecCCC-C--C-------------------------------------
Q 041097 252 -----------------------CRLSCLESLKLANES-K--M------------------------------------- 268 (391)
Q Consensus 252 -----------------------~~l~~L~~L~l~~~~-~--l------------------------------------- 268 (391)
..+++|++|++++.. . .
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 123455555554410 0 0
Q ss_pred ---------Cchhhh----------cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC
Q 041097 269 ---------PRRSNI----------IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR 328 (391)
Q Consensus 269 ---------p~L~~L----------lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 328 (391)
+.|+.| .| .++.+ ++|+.|++++|.+...++..++.+++|+.|+++.|..........+
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred ccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 112211 34 56677 7888888888877766666777888888888886655332222336
Q ss_pred cccccceeeeccccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
.+++|++|++++|. +..+ |.++..+++|++|+++++.
T Consensus 345 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 345 NLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCCc-ccccChhhccccccccEEECCCCc
Confidence 77888888888774 5555 6778888888888888764
No 33
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=5.1e-14 Score=141.65 Aligned_cols=212 Identities=20% Similarity=0.089 Sum_probs=137.3
Q ss_pred CceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYL 207 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L 207 (391)
.+++.|.+..+.... +.. . ++++.|.+.++... .++. .+++|++|++++|.+..+|. .+.+|++|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-----SLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCC-----cCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 456666666332222 222 4 66777766655432 1111 55677777777777766665 44566777
Q ss_pred EccCCCCCccCCCCc---EEEeeCCccCcc-----eeeEEecc--cccchhHHhcCCCCCCEEEecCCC--CC----Cch
Q 041097 208 KLNIPSLKSLPSSRK---ILRLSGNSQFHF-----SLASLLLY--YQSLLSKSLCRLSCLESLKLANES--KM----PRR 271 (391)
Q Consensus 208 ~l~~~~i~~lp~~~~---~L~l~~~~l~~L-----~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~--~l----p~L 271 (391)
++++|.+..+|..+. +|++++|.+..+ +|+.|+++ ....+| ..+++|+.|++++.. .+ ++|
T Consensus 127 ~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L 203 (622)
T 3g06_A 127 WIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSEL 203 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred ECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccchh
Confidence 777776666665444 777777766554 56666666 344455 445778888887722 11 233
Q ss_pred hhh------ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccc
Q 041097 272 SNI------ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLK 345 (391)
Q Consensus 272 ~~L------lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 345 (391)
+.| +..+...+++|+.|++++|.+...+ ..+++|+.|+++.|.... ++. .+++|+.|++++| .++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~--~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM--LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC--CCTTCCEEECCSS-CCC
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc--ccccCcEEeCCCC-CCC
Confidence 333 1111112278999999998877644 567899999999665543 222 6789999999988 588
Q ss_pred cchHhhcCCCCCCEEEeeCCc
Q 041097 346 RIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 346 ~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.+|.++..+++|+.|++++++
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCC
T ss_pred cCCHHHhhccccCEEEecCCC
Confidence 999999999999999999986
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=138.87 Aligned_cols=227 Identities=21% Similarity=0.160 Sum_probs=127.7
Q ss_pred CceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcc-cCCCCccc
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSG-IENLFLLR 205 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~-i~~l~~L~ 205 (391)
..++.+.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..+|.. ++++.+|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 356666666333332112123 3 67777766554332 11224466777788888888877777655 67777888
Q ss_pred EEEccCCCCCccCC--CCc------EEEeeCC-ccCcc---------eeeEEecc--cccc-hhHHhcCCCCCCEEEecC
Q 041097 206 YLKLNIPSLKSLPS--SRK------ILRLSGN-SQFHF---------SLASLLLY--YQSL-LSKSLCRLSCLESLKLAN 264 (391)
Q Consensus 206 ~L~l~~~~i~~lp~--~~~------~L~l~~~-~l~~L---------~L~~L~l~--~~~~-lp~~i~~l~~L~~L~l~~ 264 (391)
+|++++|.+..+|. .+. +|++++| .+..+ +|+.|+++ .... .|..++++++|++|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 88888877777776 232 6777766 34322 45555554 1122 244455555555555544
Q ss_pred CCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChh---hhcCCCCCCEEEcCCCCCcCcc---cc-CCCcccccce
Q 041097 265 ESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIP---ALEKLSVLQVLKLKQNLYSEER---TM-GIRAMPKLEC 335 (391)
Q Consensus 265 ~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~---~~-~~~~~~~L~~ 335 (391)
.. +.. +| .+..+ ++|+.|++++|.+...+.. .....+.++.+++..+...+.. .+ ..+.+++|++
T Consensus 208 n~----l~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 208 KQ----HIL-LLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp SC----STT-HHHHHHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred Cc----ccc-chhhhhhhc-ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 11 000 22 22234 5555555555555443221 1223445555555533222111 11 1246789999
Q ss_pred eeeccccccccchHhh-cCCCCCCEEEeeCCc
Q 041097 336 LIINPYAHLKRIHEQL-WCLKSLNKLELWWPE 366 (391)
Q Consensus 336 L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~ 366 (391)
|++++| .++.+|.++ ..+++|++|+++++|
T Consensus 282 L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 282 LEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 999988 588999885 899999999999864
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3e-14 Score=148.16 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=146.3
Q ss_pred cCceEEEEEeccCCCcccccCCC--CCccEEEEEecC-CcCCCchhhHHhhcc-------CCcccEEEcCCCccccCCc-
Q 041097 128 RENVKRFTAHRKLNDFAFLDDFD--SFLHSLLYLTSG-SQYLDPTYCEKICKM-------FKFLRVLDLGSLVLIRYPS- 196 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~~--~~lrsl~~~~~~-~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~l~~~p~- 196 (391)
..+.+.|.+..+.....++..+. ++++.|.+..+. .. ...++..+.. ++.|+.|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 45678888873332322444343 788888776654 21 1123344443 4599999999999998998
Q ss_pred -ccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcc--------e-eeEEecc--cccchhHHhcCCCC--
Q 041097 197 -GIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHF--------S-LASLLLY--YQSLLSKSLCRLSC-- 256 (391)
Q Consensus 197 -~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L--------~-L~~L~l~--~~~~lp~~i~~l~~-- 256 (391)
.++++.+|++|++++|.+..+| .++ .|++++|.+..+ + |+.|+++ ....+|..++.++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 8999999999999999998888 555 889999877654 5 8888888 45577777766654
Q ss_pred CCEEEecCCC---CCC------------chhhh---------cc-cc-ccCCCCccEEEeecccCCCCChhhhc------
Q 041097 257 LESLKLANES---KMP------------RRSNI---------IL-AE-YQFPPSLTHLSFSNIELMDDPIPALE------ 304 (391)
Q Consensus 257 L~~L~l~~~~---~lp------------~L~~L---------lp-~~-~~l~~~L~~L~l~~~~~~~~~~~~l~------ 304 (391)
|+.|++++.. .+| +|+.| +| .+ ..+ ++|+.|+|++|.+...+...+.
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccc
Confidence 8888887621 111 22222 44 22 245 6666666666665543322221
Q ss_pred -CCCCCCEEEcCCCCCcCccccCCC--cccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 305 -KLSVLQVLKLKQNLYSEERTMGIR--AMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 305 -~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
++++|+.|+++.|... ..+.... .+++|+.|++++| .+..+|.++..+++|+.|++++++
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 2236666666655443 1111223 5677777777766 356677777777777777776544
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=3.7e-14 Score=129.25 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=135.3
Q ss_pred CCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCcc-CCCCc------EEEeeCCc-cCcceeeEEecccccch-
Q 041097 178 FKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSL-PSSRK------ILRLSGNS-QFHFSLASLLLYYQSLL- 247 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~l-p~~~~------~L~l~~~~-l~~L~L~~L~l~~~~~l- 247 (391)
.+.|+.|+++++.+..++ ..+.++.+|++|+++++.+..+ |..+. +|++++|. +. .+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-------------~~~ 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-------------SVD 97 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-------------CCC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-------------ccC
Confidence 468999999999999766 5689999999999999998876 44443 77777775 55 55
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG 326 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 326 (391)
|..+..+++|++|++++.. +..+.| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|.........
T Consensus 98 ~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCG----LQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp TTTTTTCTTCCEEECTTSC----CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred HHHhcCCcCCCEEECCCCc----CCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 6789999999999998822 011134 67788 99999999999998877777899999999999976655322222
Q ss_pred CCcccccceeeeccccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 327 IRAMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 327 ~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
...+++|++|++++|. +..+ |.++..+++|++|+++++.
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc
Confidence 4678999999999985 5555 8889999999999998864
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.3e-14 Score=131.57 Aligned_cols=190 Identities=20% Similarity=0.121 Sum_probs=135.6
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCC-Cc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSS-RK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-~~------ 222 (391)
..++.|.+.++... . .....+..++.|++|++++|.+..++ ..+.++.+|++|+++++.+..+|.. +.
T Consensus 28 ~~l~~L~ls~n~l~---~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLR---H-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCC---E-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCccc---c-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 56777766554432 1 12235677888899999888888655 4678888899999988888876633 32
Q ss_pred EEEeeCCccCcceeeEEecccccchhH-HhcCCCCCCEEEecCCCCCCchhhh-cc-ccccCCCCccEEEeecccCCCCC
Q 041097 223 ILRLSGNSQFHFSLASLLLYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNI-IL-AEYQFPPSLTHLSFSNIELMDDP 299 (391)
Q Consensus 223 ~L~l~~~~l~~L~L~~L~l~~~~~lp~-~i~~l~~L~~L~l~~~~~lp~L~~L-lp-~~~~l~~~L~~L~l~~~~~~~~~ 299 (391)
.|++++|.+. .++. .++.+++|++|++++.. +..+ +| .++.+ ++|+.|++++|.+...+
T Consensus 104 ~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~----l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 104 KLVAVETNLA-------------SLENFPIGHLKTLKELNVAHNL----IQSFKLPEYFSNL-TNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp EEECTTSCCC-------------CSTTCCCTTCTTCCEEECCSSC----CCCCCCCGGGGGC-TTCCEEECCSSCCCEEC
T ss_pred EEECCCCCcc-------------ccCchhcccCCCCCEEECcCCc----cceecCchhhccC-CCCCEEECCCCCCCcCC
Confidence 6666666655 5544 68899999999998722 0110 46 77889 99999999999988766
Q ss_pred hhhhcCCCCCC----EEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hcCCCCCCEEEeeC
Q 041097 300 IPALEKLSVLQ----VLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELWW 364 (391)
Q Consensus 300 ~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~ 364 (391)
...+..+++|+ .|+++.|.... .........+|++|++++|. ++.+|.. +..+++|++|++++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 55666555555 88998666543 22223344589999999885 8888865 58899999999993
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=3.9e-14 Score=142.79 Aligned_cols=191 Identities=25% Similarity=0.281 Sum_probs=106.2
Q ss_pred hhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCC-CCc------EEEeeCCccC-c--------c-ee
Q 041097 174 ICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPS-SRK------ILRLSGNSQF-H--------F-SL 236 (391)
Q Consensus 174 ~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~-~~~------~L~l~~~~l~-~--------L-~L 236 (391)
.+..++.|+.|++++|.+..+|..++.+.+|++|+++++.+..+++ .+. +|++++|.+. . + +|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 3555666666666666666666666666666666666666554422 222 5555555332 1 1 45
Q ss_pred eEEecc--cccch---hHHhcCCCCCCEEEecCCC-------C---CCchhhh----------cc--ccccCCCCccEEE
Q 041097 237 ASLLLY--YQSLL---SKSLCRLSCLESLKLANES-------K---MPRRSNI----------IL--AEYQFPPSLTHLS 289 (391)
Q Consensus 237 ~~L~l~--~~~~l---p~~i~~l~~L~~L~l~~~~-------~---lp~L~~L----------lp--~~~~l~~~L~~L~ 289 (391)
+.|+++ ....+ |..++.+++|++|++++.. . ++.|+.| .| .+..+ ++|+.|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEE
Confidence 555555 11122 3445555555555555410 1 1222222 22 35667 7777777
Q ss_pred eecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC---CCcccccceeeeccccccccc-hHhhcCCCCCCEEEeeCC
Q 041097 290 FSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG---IRAMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 290 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~ 365 (391)
+++|.+...++..++.+++|+.|+++.|...+..+.. .+.+++|++|++++|. +..+ |..+..+++|++|+++++
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC
Confidence 7777776666566777777777777766554422211 2456667777777663 4443 456666677777776665
Q ss_pred c
Q 041097 366 E 366 (391)
Q Consensus 366 ~ 366 (391)
.
T Consensus 511 ~ 511 (606)
T 3t6q_A 511 R 511 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=5.4e-14 Score=137.38 Aligned_cols=200 Identities=20% Similarity=0.184 Sum_probs=132.9
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------IL 224 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L 224 (391)
.+++++.+.+.... .+ +.+..++.|++|++++|.+..+|. ++++.+|++|+++++.+..+|. +. +|
T Consensus 46 ~~l~~L~l~~~~i~-----~l-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-----SI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCC-----CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCc-----cC-cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 67788877665543 13 346789999999999999998877 9999999999999999988875 43 99
Q ss_pred EeeCCccCcc-------eeeEEecc--cccchhHHhcCCCCCCEEEecC--CC-----CCCchhhh---------ccccc
Q 041097 225 RLSGNSQFHF-------SLASLLLY--YQSLLSKSLCRLSCLESLKLAN--ES-----KMPRRSNI---------ILAEY 279 (391)
Q Consensus 225 ~l~~~~l~~L-------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~--~~-----~lp~L~~L---------lp~~~ 279 (391)
++++|.+..+ +|++|+++ ....++ .++.+++|++|++.+ .. .++.|+.| ++.+.
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 9999987765 78888888 444454 488899999998875 11 11222222 22344
Q ss_pred cCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCE
Q 041097 280 QFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNK 359 (391)
Q Consensus 280 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 359 (391)
.+ ++|+.|++++|.+...+ .++.+++|+.|+++.|.... ......+++|++|++++|. +..++. +..+++|++
T Consensus 197 ~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 197 KL-TNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTE 269 (466)
T ss_dssp GC-TTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSE
T ss_pred cC-CCCCEEEecCCcccccc--cccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCE
Confidence 45 55555555555544422 24555666666665443332 1123456677777777663 555554 667777777
Q ss_pred EEeeCCc
Q 041097 360 LELWWPE 366 (391)
Q Consensus 360 L~l~~~~ 366 (391)
|+++++.
T Consensus 270 L~l~~n~ 276 (466)
T 1o6v_A 270 LKLGANQ 276 (466)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 7776654
No 40
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=3.5e-14 Score=130.00 Aligned_cols=162 Identities=28% Similarity=0.290 Sum_probs=92.0
Q ss_pred cCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchhHH
Q 041097 177 MFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSKS 250 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~ 250 (391)
.++.|+.|+++++.+..++ .++.+.+|++|+++++.+..+|. +. .|++++|.+. .+| .
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------~~~-~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-------------DLS-S 107 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CGG-G
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-------------CCh-h
Confidence 3445555555555555443 25555555555555555555443 22 4444444444 333 3
Q ss_pred hcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcc
Q 041097 251 LCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAM 330 (391)
Q Consensus 251 i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 330 (391)
++.+++|++|++++.. +.. +|.+..+ ++|+.|++++|.+... +.++.+++|+.|+++.|...... ....+
T Consensus 108 l~~l~~L~~L~L~~n~----i~~-~~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~--~l~~l 177 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG----ISD-INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGL 177 (291)
T ss_dssp GTTCTTCCEEECTTSC----CCC-CGGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred hccCCCCCEEECCCCc----CCC-ChhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch--hhcCC
Confidence 6667777777776522 000 2344556 6777777777766553 56667777777777755544322 24566
Q ss_pred cccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 331 PKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 331 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
++|++|++++| .++.+| .+..+++|+.|++++++
T Consensus 178 ~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred CccCEEECCCC-cCCCCh-hhccCCCCCEEECcCCc
Confidence 67777777766 466665 36667777777776654
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=1e-13 Score=135.00 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=120.8
Q ss_pred cCceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 128 RENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
...++.+.+....... ...... ++++.|.+..+.... + .+..++.|++|++++|.+..++ ++++.+|++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~-----~--~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNITT-----L--DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCC-CTTGGGCTTCSEEECCSSCCSC-----C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCccc-ChhhcccCCCCEEEccCCcCCe-----E--ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 3556677766332222 222223 677777666554431 1 1567777888888888777654 777778888
Q ss_pred EEccCCCCCccCCCCc------EEEeeCCccCcc------eeeEEeccc---ccchhHHhcCCCCCCEEEecCCCCCCch
Q 041097 207 LKLNIPSLKSLPSSRK------ILRLSGNSQFHF------SLASLLLYY---QSLLSKSLCRLSCLESLKLANESKMPRR 271 (391)
Q Consensus 207 L~l~~~~i~~lp~~~~------~L~l~~~~l~~L------~L~~L~l~~---~~~lp~~i~~l~~L~~L~l~~~~~lp~L 271 (391)
|+++++.+..+| ++ .|++++|.+..+ +|+.|+++. ...+ .++.+++|++|++++.. +
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~----l 182 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK----I 182 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC----C
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc----c
Confidence 888887777665 22 777777766643 555665551 1222 35556666666665521 0
Q ss_pred hhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhh
Q 041097 272 SNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQL 351 (391)
Q Consensus 272 ~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 351 (391)
.. +| ++.+ ++|+.|++++|.+... .++.+++|+.|+++.|...+ ++.+.+++|+.|++++| .++.+| +
T Consensus 183 ~~-l~-l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~---ip~~~l~~L~~L~l~~N-~l~~~~--~ 250 (457)
T 3bz5_A 183 TE-LD-VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVN-PLTELD--V 250 (457)
T ss_dssp CC-CC-CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC---CCCTTCTTCSEEECCSS-CCSCCC--C
T ss_pred ce-ec-cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc---cCccccCCCCEEEeeCC-cCCCcC--H
Confidence 00 22 4456 6777777777766653 25667777777777665554 22566777777777766 356655 3
Q ss_pred cCCCCCCEEEe
Q 041097 352 WCLKSLNKLEL 362 (391)
Q Consensus 352 ~~l~~L~~L~l 362 (391)
+.+++|+.|++
T Consensus 251 ~~l~~L~~L~l 261 (457)
T 3bz5_A 251 STLSKLTTLHC 261 (457)
T ss_dssp TTCTTCCEEEC
T ss_pred HHCCCCCEEec
Confidence 34555544443
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=2.4e-14 Score=144.41 Aligned_cols=231 Identities=17% Similarity=0.147 Sum_probs=143.6
Q ss_pred cCceEEEEEeccCCCcccccCCC--CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCc-ccCCCCc
Q 041097 128 RENVKRFTAHRKLNDFAFLDDFD--SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPS-GIENLFL 203 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~~--~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~-~i~~l~~ 203 (391)
..+.+.+.+..+.... ++.... ++++.|.+.++... ...+..+..++.|+.|++++|.+. .+|. .++.+.+
T Consensus 277 l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFE----NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp CTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCS----BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred ccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcC----cCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3467777776333332 333333 77777777655432 122345667777777777777765 4443 3677777
Q ss_pred ccEEEccCCCCCcc---CCCCc------EEEeeCCccCcc---------eeeEEecc--ccc-chh-HHhcCCCCCCEEE
Q 041097 204 LRYLKLNIPSLKSL---PSSRK------ILRLSGNSQFHF---------SLASLLLY--YQS-LLS-KSLCRLSCLESLK 261 (391)
Q Consensus 204 L~~L~l~~~~i~~l---p~~~~------~L~l~~~~l~~L---------~L~~L~l~--~~~-~lp-~~i~~l~~L~~L~ 261 (391)
|++|+++++.+..+ |..+. .|++++|.+..+ +|+.|+++ ... ..| ..++.+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 77777777776654 33333 777777654433 56666666 111 112 2356666666666
Q ss_pred ecCCC-------C---CCchhhh-----------cc---ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCC
Q 041097 262 LANES-------K---MPRRSNI-----------IL---AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQN 317 (391)
Q Consensus 262 l~~~~-------~---lp~L~~L-----------lp---~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 317 (391)
+++.. . +|+|+.| +| .+..+ ++|+.|++++|.+...++..++.+++|+.|+++.|
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 66511 0 1222222 12 46677 88888888888877766677888888888888876
Q ss_pred CCcCccccCCCcccccceeeeccccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 318 LYSEERTMGIRAMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
...+..+.....+++| +|++++|. ++.+ |..+..+++|++|+++++|
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccCcCChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCC
Confidence 6655433344677788 88888874 5554 5567888999999998754
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=2.1e-14 Score=132.73 Aligned_cols=182 Identities=23% Similarity=0.169 Sum_probs=119.0
Q ss_pred cCCcccEEEcCCCccc-cCCccc--CCCCcccEEEccCCCCCccCC-----------CCcEEEeeCCccCcc--------
Q 041097 177 MFKFLRVLDLGSLVLI-RYPSGI--ENLFLLRYLKLNIPSLKSLPS-----------SRKILRLSGNSQFHF-------- 234 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~-~~p~~i--~~l~~L~~L~l~~~~i~~lp~-----------~~~~L~l~~~~l~~L-------- 234 (391)
.++.|++|++++|.+. ..|..+ +.+.+|++|++++|.+..+|. .+.+|++++|.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4667777777777766 566655 667777777777776665542 233667776655543
Q ss_pred -eeeEEecccc-----cchhHHh--cCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCC-hhhh
Q 041097 235 -SLASLLLYYQ-----SLLSKSL--CRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDP-IPAL 303 (391)
Q Consensus 235 -~L~~L~l~~~-----~~lp~~i--~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~-~~~l 303 (391)
+|+.|++++. ..+|..+ +.+++|++|++++.. +..+.. +| .+..+ ++|+.|++++|.+...+ .+.+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG-VCSALAAAR-VQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH-HHHHHHHTT-CCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH-HHHHHHhcC-CCCCEEECCCCcCCcccchhhh
Confidence 5666666611 1245555 788888888887722 000000 22 23467 88888888888877654 3556
Q ss_pred cCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 304 EKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 304 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
..+++|++|+++.|.... ++...+++|++|+++++ +++.+|. +..+++|++|++++++
T Consensus 250 ~~l~~L~~L~Ls~N~l~~---ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSCCSS---CCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCccCh---hhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 677888888888666541 22222378889999877 5777876 7888889999888876
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=5e-14 Score=131.31 Aligned_cols=226 Identities=17% Similarity=0.163 Sum_probs=144.5
Q ss_pred CceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
..++.+.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..+|..+. .+|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCE
Confidence 457777776333333122233 3 77888877655432 1223567788888888888888887777665 67888
Q ss_pred EEccCCCCCccCCCC-c------EEEeeCCccCcc----------eeeEEecc--cccchh-------------------
Q 041097 207 LKLNIPSLKSLPSSR-K------ILRLSGNSQFHF----------SLASLLLY--YQSLLS------------------- 248 (391)
Q Consensus 207 L~l~~~~i~~lp~~~-~------~L~l~~~~l~~L----------~L~~L~l~--~~~~lp------------------- 248 (391)
|+++++.+..+|... . .|++++|.+... +|+.|+++ ....+|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCc
Confidence 888888777776542 2 777777766421 44444444 222233
Q ss_pred ---HHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc
Q 041097 249 ---KSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT 324 (391)
Q Consensus 249 ---~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 324 (391)
..+.++++|++|++++.. +..+.| .+..+ ++|+.|++++|.+...+ ..++.+++|+.|+++.|.......
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~----l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQ----IRMIENGSLSFL-PTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSC----CCCCCTTGGGGC-TTCCEEECCSSCCCBCC-TTGGGCTTCCEEECCSSCCCBCCT
T ss_pred cCHHHhcCCCCCCEEECCCCc----CCcCChhHhhCC-CCCCEEECCCCcCeecC-hhhhcCccCCEEECCCCCCCccCh
Confidence 345555555555555411 000033 67788 99999999999988655 568999999999999776654321
Q ss_pred cCC------Ccccccceeeecccccc--ccchHhhcCCCCCCEEEeeCCc
Q 041097 325 MGI------RAMPKLECLIINPYAHL--KRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 325 ~~~------~~~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
-.. ..++.|+.|++++++.. ...|..+..+++|+.++++++.
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 111 12578999999998632 3456778899999999998865
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=7.7e-14 Score=126.34 Aligned_cols=173 Identities=23% Similarity=0.214 Sum_probs=89.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCc
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNS 230 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~ 230 (391)
..++.+.+.+.... .+ +.+..++.|++|++++|.+..+ ..++.+.+|++|++++|.+..+|..
T Consensus 41 ~~L~~L~l~~~~i~-----~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~---------- 103 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-----SV-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNG---------- 103 (272)
T ss_dssp TTCCEEECTTSCCC-----CC-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTT----------
T ss_pred cceeeeeeCCCCcc-----cc-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChh----------
Confidence 45555555444332 11 3355667777777777776654 3566677777777777766655432
Q ss_pred cCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCC
Q 041097 231 QFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVL 309 (391)
Q Consensus 231 l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L 309 (391)
.++.+++|++|++++.. +..+.| .++.+ ++|+.|++++|.+...+...++.+++|
T Consensus 104 -------------------~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 104 -------------------VFDKLTNLKELVLVENQ----LQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp -------------------TTTTCTTCCEEECTTSC----CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -------------------HhcCCcCCCEEECCCCc----CCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccC
Confidence 24555555555555411 000011 24455 556666666655555444445555666
Q ss_pred CEEEcCCCCCcCccccCCCcccccceeeeccccccccchH-hhcCCCCCCEEEeeCC
Q 041097 310 QVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWP 365 (391)
Q Consensus 310 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~ 365 (391)
+.|+++.|...+......+.+++|++|++++|. ++.+|. .+..+++|++|+++++
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 666665444332111112445566666665552 444433 2455566666665543
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=1.2e-14 Score=133.79 Aligned_cols=193 Identities=17% Similarity=0.122 Sum_probs=129.8
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC---CcccCCCCcccEEEccCCCCCccCCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY---PSGIENLFLLRYLKLNIPSLKSLPSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---p~~i~~l~~L~~L~l~~~~i~~lp~~~~----- 222 (391)
+.++.|.+.++... ......+.+++.|++|++++|.+... |..+..+.+|++|+++++.+..+|..+.
T Consensus 28 ~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 45666655544332 11112355666777777777666533 4455556677777777776666554432
Q ss_pred -EEEeeCCccCcceeeEEecccccchh--HHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCC-
Q 041097 223 -ILRLSGNSQFHFSLASLLLYYQSLLS--KSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMD- 297 (391)
Q Consensus 223 -~L~l~~~~l~~L~L~~L~l~~~~~lp--~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~- 297 (391)
+|++++|.+. .++ ..+..+++|++|++++.. +....| .+..+ ++|+.|++++|.+..
T Consensus 104 ~~L~l~~n~l~-------------~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 104 EHLDFQHSNLK-------------QMSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGL-SSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CEEECTTSEEE-------------SSTTTTTTTTCTTCCEEECTTSC----CEECSTTTTTTC-TTCCEEECTTCEEGGG
T ss_pred CEEECCCCccc-------------ccccchhhhhccCCCEEECCCCc----CCccchhhcccC-cCCCEEECCCCccccc
Confidence 4444444444 554 478899999999998722 011134 56788 999999999998765
Q ss_pred CChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 298 DPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 298 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
..+..++.+++|++|+++.|......+...+.+++|++|++++|. +..+|. .+..+++|++|++++++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 234678899999999999776654333334688999999999884 666654 67889999999999876
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=137.22 Aligned_cols=207 Identities=17% Similarity=0.085 Sum_probs=128.0
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCC-Cc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSS-RK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------ 222 (391)
+.++.|.+.++... ......+.+++.|++|++++|.+..+ |..++++.+|++|++++|.+..+|.. ++
T Consensus 52 ~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 67888877655442 12223578889999999999998855 46788999999999999999888765 22
Q ss_pred EEEeeCCccCcc----------eeeEEeccc---ccch-hHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccE
Q 041097 223 ILRLSGNSQFHF----------SLASLLLYY---QSLL-SKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTH 287 (391)
Q Consensus 223 ~L~l~~~~l~~L----------~L~~L~l~~---~~~l-p~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~ 287 (391)
+|++++|.+..+ +|+.|+++. ...+ |..++++++|++|++++.. +....| .+..+ ++|+.
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l-~~L~~ 202 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD----LQSYEPKSLKSI-QNVSH 202 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT----CCEECTTTTTTC-SEEEE
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC----cCccCHHHHhcc-ccCCe
Confidence 888888866522 455555551 2222 2345555555555555411 000024 55666 67777
Q ss_pred EEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC---CCcccccceeeecccc----ccccchHhhcCCCCCCEE
Q 041097 288 LSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG---IRAMPKLECLIINPYA----HLKRIHEQLWCLKSLNKL 360 (391)
Q Consensus 288 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~c~----~l~~lp~~~~~l~~L~~L 360 (391)
|++++|.+...+...++.+++|+.|+++.|...+..... ....+.++.++++++. .+..+|.++..+++|++|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 777776665444334455677777777755544321111 1123344455554432 234578889999999999
Q ss_pred EeeCCc
Q 041097 361 ELWWPE 366 (391)
Q Consensus 361 ~l~~~~ 366 (391)
+++++.
T Consensus 283 ~Ls~N~ 288 (353)
T 2z80_A 283 EFSRNQ 288 (353)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 999875
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=5.7e-14 Score=136.66 Aligned_cols=180 Identities=22% Similarity=0.191 Sum_probs=140.2
Q ss_pred CcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcc---------eeeEEec
Q 041097 179 KFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHF---------SLASLLL 241 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L---------~L~~L~l 241 (391)
+.+++|++++|.+..+ |..++++.+|++|++++|.+..++.. +. +|++++|.+..+ +|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5899999999999855 67899999999999999999987643 33 999999987754 7888888
Q ss_pred c--cccchhH-HhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCC
Q 041097 242 Y--YQSLLSK-SLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQ 316 (391)
Q Consensus 242 ~--~~~~lp~-~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 316 (391)
+ ....+|. .+.++++|++|++.+.+. +.. +| .+..+ ++|+.|++++|.+... +.+..+++|+.|+++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~---l~~-i~~~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKK---LEY-ISEGAFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG 227 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTT---CCE-ECTTTTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTT
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCC---ccc-cChhhccCC-CCCCEEECCCCccccc--ccccccccccEEECcC
Confidence 8 4555554 677888888888876110 010 33 56778 9999999999988764 4688899999999997
Q ss_pred CCCcCccccCCCcccccceeeeccccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 317 NLYSEERTMGIRAMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
|...+..+.....+++|+.|++++|. +..+ |..+..+++|++|+++++.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc
Confidence 76655433344788999999999885 5555 5678899999999998864
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.4e-14 Score=140.52 Aligned_cols=178 Identities=19% Similarity=0.116 Sum_probs=142.8
Q ss_pred CCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcc----eeeEEecc--cc
Q 041097 178 FKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHF----SLASLLLY--YQ 244 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L----~L~~L~l~--~~ 244 (391)
++.|+.|++++|.+..++ ..++.+.+|++|++++|.+...++ ++ +|++++|.+..+ +|+.|+++ ..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 348999999999999665 689999999999999999886554 43 999999988776 78889888 34
Q ss_pred cchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhc-CCCCCCEEEcCCCCCcCc
Q 041097 245 SLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALE-KLSVLQVLKLKQNLYSEE 322 (391)
Q Consensus 245 ~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~ 322 (391)
..++. ..+++|++|++++.. +..+.| .++.+ ++|+.|++++|.+...++..+. .+++|+.|+++.|...+.
T Consensus 112 ~~~~~--~~l~~L~~L~L~~N~----l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 112 SRVSC--SRGQGKKNIYLANNK----ITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCEEE--CCCSSCEEEECCSSC----CCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCCc--cccCCCCEEECCCCC----CCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 44443 356889999998722 111145 67888 9999999999998876666665 799999999997776543
Q ss_pred cccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 323 RTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.....+++|+.|++++| .++.+|..+..+++|+.|+++++.
T Consensus 185 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp --ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred --cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc
Confidence 34456899999999988 588998889999999999999875
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.4e-14 Score=134.23 Aligned_cols=185 Identities=18% Similarity=0.111 Sum_probs=145.5
Q ss_pred hHHhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcc----eeeEE
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHF----SLASL 239 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L----~L~~L 239 (391)
+...+..++.|+.|++++|.+..++ ..++.+.+|++|++++|.+..+++ +. +|++++|.+..+ +|+.|
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L 104 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETL 104 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEE
Confidence 3355666789999999999999666 689999999999999999886554 33 999999988876 78888
Q ss_pred ecc--cccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhh-cCCCCCCEEEcC
Q 041097 240 LLY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPAL-EKLSVLQVLKLK 315 (391)
Q Consensus 240 ~l~--~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~ 315 (391)
+++ ....++. ..+++|++|++++.. +..+.| .++.+ ++|+.|++++|.+...++..+ +.+++|++|+++
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~----l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANNK----ITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSSC----CCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCCC----CCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 888 3444443 347889999998722 111134 67778 999999999999887665555 578999999999
Q ss_pred CCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 316 QNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.|..... .....+++|++|++++| .++.+|..+..+++|++|+++++.
T Consensus 178 ~N~l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 178 YNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TSCCCEE--ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred CCcCccc--ccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence 7765542 33446899999999988 588998889999999999999876
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=1e-13 Score=138.57 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=23.8
Q ss_pred cccccceeeeccccccccchHh-hcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 366 (391)
.+++|++|++++| .++.+|.. +..+++|++|+++++|
T Consensus 471 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 4556666666665 35666665 6667777777776643
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.9e-13 Score=122.15 Aligned_cols=166 Identities=21% Similarity=0.226 Sum_probs=114.7
Q ss_pred cccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcceeeEEecccccchhHHhc
Q 041097 180 FLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLC 252 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~ 252 (391)
..+.++++++.+..+|..+. .++++|+++++.+..++.. +. +|++++|.+. ...|..+.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------TLSAGVFD 80 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC------------CCCTTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC------------ccCHhHhc
Confidence 45566777777766666655 3667777777766655442 22 5566655555 12244578
Q ss_pred CCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcc
Q 041097 253 RLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAM 330 (391)
Q Consensus 253 ~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 330 (391)
.+++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|..........+.+
T Consensus 81 ~l~~L~~L~L~~n~----l~~-~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 81 DLTELGTLGLANNQ----LAS-LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TCTTCCEEECTTSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCcCCEEECCCCc----ccc-cChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 88999999988722 011 23 56778 899999999998887776667889999999998666554222234678
Q ss_pred cccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 331 PKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 331 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
++|++|+++++ .++.+|. .+..+++|++|++++++
T Consensus 155 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 89999999987 4677764 67888999999998755
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=1.7e-13 Score=127.58 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=141.6
Q ss_pred CcccEEEcCCCccccCCc-ccCCCCcccEEEccCCCCCcc-CCCCc------EEEeeCCccCcc------eeeEEecc--
Q 041097 179 KFLRVLDLGSLVLIRYPS-GIENLFLLRYLKLNIPSLKSL-PSSRK------ILRLSGNSQFHF------SLASLLLY-- 242 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~l~~~~i~~l-p~~~~------~L~l~~~~l~~L------~L~~L~l~-- 242 (391)
+.+++|+++++.+..++. .++++.+|++|+++++.+..+ |..+. +|++++|.+..+ +|+.|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 689999999999997765 789999999999999999987 66665 999999988876 79999999
Q ss_pred cccchh-HHhcCCCCCCEEEecCCCCCCchhh--hcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCC
Q 041097 243 YQSLLS-KSLCRLSCLESLKLANESKMPRRSN--IIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNL 318 (391)
Q Consensus 243 ~~~~lp-~~i~~l~~L~~L~l~~~~~lp~L~~--Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 318 (391)
....++ ..++++++|++|++++.. +.. ..| .+..+ ++|+.|++++|.+...+. .+ .++|+.|+++.|.
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~ 203 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNP----LKSSGIENGAFQGM-KKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNK 203 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSC----CCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSC
T ss_pred cccccCHhHhcCCccccEEECCCCc----CCccCcChhhccCC-CCcCEEECCCCccccCCc-cc--cccCCEEECCCCc
Confidence 344444 568999999999998722 000 034 67788 999999999998876552 22 2899999999776
Q ss_pred CcCccccCCCcccccceeeeccccccccch-HhhcCCCCCCEEEeeCCc
Q 041097 319 YSEERTMGIRAMPKLECLIINPYAHLKRIH-EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 366 (391)
.....+...+.+++|++|++++|. ++.++ .++..+++|++|+++++.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred CCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 654333334688999999999885 66665 478899999999999875
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=1.1e-13 Score=139.75 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=74.2
Q ss_pred cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccc-hHhhc
Q 041097 275 IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRI-HEQLW 352 (391)
Q Consensus 275 lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~ 352 (391)
.| .+..+ ++|+.|+|++|.+...++..++.+++|+.|+++.|...+......+.+++|++|+++++. ++.+ |..+.
T Consensus 486 ~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~ 563 (635)
T 4g8a_A 486 LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQ 563 (635)
T ss_dssp ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTT
T ss_pred Cchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHH
Confidence 44 56677 889999999988887777788999999999999776655433334678899999999884 6665 56677
Q ss_pred CC-CCCCEEEeeCCc------H-HHHHHhhh
Q 041097 353 CL-KSLNKLELWWPE------P-ELRQQLRE 375 (391)
Q Consensus 353 ~l-~~L~~L~l~~~~------~-~l~~~~~~ 375 (391)
.+ ++|++|+++++| - .|.+|++.
T Consensus 564 ~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp CCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred hhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 77 689999998633 2 24566654
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=2e-13 Score=143.02 Aligned_cols=234 Identities=21% Similarity=0.190 Sum_probs=133.6
Q ss_pred cCceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccC-CcccCCCCcc
Q 041097 128 RENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRY-PSGIENLFLL 204 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-p~~i~~l~~L 204 (391)
+..++.|.+..+.......... + ++++.|.+..+... ....+..+..+++|++|++++|.+..+ |..++++.+|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4567777776333333222233 3 67777766554221 112235566777777777777776633 6677777777
Q ss_pred cEEEccCCCCCc-cCCC--Cc------EEEeeCCccCcc----------eeeEEecc--cc-cchhH-------------
Q 041097 205 RYLKLNIPSLKS-LPSS--RK------ILRLSGNSQFHF----------SLASLLLY--YQ-SLLSK------------- 249 (391)
Q Consensus 205 ~~L~l~~~~i~~-lp~~--~~------~L~l~~~~l~~L----------~L~~L~l~--~~-~~lp~------------- 249 (391)
++|++++|.+.. +|.. ++ +||+++|.+..+ +|+.|+++ .. ...|.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 777777776654 3433 22 677776655432 56666655 11 01111
Q ss_pred -------------HhcCCCC------CCEEEecCCC---CC---------------------------------------
Q 041097 250 -------------SLCRLSC------LESLKLANES---KM--------------------------------------- 268 (391)
Q Consensus 250 -------------~i~~l~~------L~~L~l~~~~---~l--------------------------------------- 268 (391)
.++.+++ |+.|++++.. ..
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 1222222 5555554310 00
Q ss_pred ------Cchhhh----------cc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCccc
Q 041097 269 ------PRRSNI----------IL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMP 331 (391)
Q Consensus 269 ------p~L~~L----------lp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (391)
++++.| .| .+..+ ++|+.|++++|.+...+...++.+++|++|+++.|..........+.++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 111111 23 55667 7788888888777666556677788888888876655443333346777
Q ss_pred ccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 332 KLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 332 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
+|++|++++| .+..+|. .+..+++|++|+++++.
T Consensus 339 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 339 KVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 8888888877 4666653 46778888888887765
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=8.8e-14 Score=134.85 Aligned_cols=180 Identities=22% Similarity=0.221 Sum_probs=140.2
Q ss_pred CcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcc---------eeeEEec
Q 041097 179 KFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHF---------SLASLLL 241 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L---------~L~~L~l 241 (391)
..+++|++++|.+..++ ..+.++.+|++|++++|.+..++.. +. +|++++|++..+ +|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67999999999999655 7899999999999999999887633 22 999999987755 7888888
Q ss_pred c--cccchhH-HhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCC
Q 041097 242 Y--YQSLLSK-SLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQ 316 (391)
Q Consensus 242 ~--~~~~lp~-~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 316 (391)
+ ....+|. .+.++++|++|++.+.+.+ .. +| .+..+ ++|+.|++++|.+... +.+..+++|+.|+++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l---~~-i~~~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRL---SY-ISEGAFEGL-SNLRYLNLAMCNLREI--PNLTPLIKLDELDLSG 216 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTC---CE-ECTTTTTTC-SSCCEEECTTSCCSSC--CCCTTCSSCCEEECTT
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCc---ce-eCcchhhcc-cccCeecCCCCcCccc--cccCCCcccCEEECCC
Confidence 8 4555554 6788888888888761100 00 33 56778 9999999999988764 4688999999999997
Q ss_pred CCCcCccccCCCcccccceeeeccccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 317 NLYSEERTMGIRAMPKLECLIINPYAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
|............+++|+.|+++++. ++.+ |..+..+++|++|+++++.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSC
T ss_pred CccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCC
Confidence 76654333344688999999999884 6666 4568899999999998864
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=2.8e-13 Score=122.46 Aligned_cols=166 Identities=25% Similarity=0.218 Sum_probs=132.2
Q ss_pred CcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcceeeEEecccccchhHH-
Q 041097 179 KFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHFSLASLLLYYQSLLSKS- 250 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~- 250 (391)
...+.++++++.+..+|..+. .++++|+++++.+..+|.. +. +|++++|.+. .+|..
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~i~~~~ 80 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------------TLPAGI 80 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------------CCCTTT
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------------eeChhh
Confidence 457899999999999998776 5899999999999988763 33 7777777776 77765
Q ss_pred hcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC
Q 041097 251 LCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR 328 (391)
Q Consensus 251 i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 328 (391)
+.++++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|++|+++.|..........+
T Consensus 81 ~~~l~~L~~L~l~~n~----l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK----LQA-LPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp TSSCTTCCEEECCSSC----CCC-CCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hcCCCCCCEEECCCCc----CCc-CCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 5889999999998722 000 33 45778 9999999999999888877889999999999997765542222246
Q ss_pred cccccceeeeccccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
.+++|++|++++| .++.+|. .+..+++|++|+++++.
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc
Confidence 7899999999988 4777775 47889999999998875
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=1.6e-13 Score=136.67 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=45.1
Q ss_pred hccCCcccEEEcCCCccc--cCCcccCCCCcccEEEccCCC-CCccCC-CCc------EEEeeCCccCcc---------e
Q 041097 175 CKMFKFLRVLDLGSLVLI--RYPSGIENLFLLRYLKLNIPS-LKSLPS-SRK------ILRLSGNSQFHF---------S 235 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~--~~p~~i~~l~~L~~L~l~~~~-i~~lp~-~~~------~L~l~~~~l~~L---------~ 235 (391)
+..++.|++|++++|.+. ..|..++++.+|++|+++++. +..+|. .+. .|++++|.+... +
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 444555555555555544 223444555555555555443 333432 222 455555444331 4
Q ss_pred eeEEecc--cccchhHHh-cCCCCCCEEEecC
Q 041097 236 LASLLLY--YQSLLSKSL-CRLSCLESLKLAN 264 (391)
Q Consensus 236 L~~L~l~--~~~~lp~~i-~~l~~L~~L~l~~ 264 (391)
|+.|++. ....+|..+ +.+++|++|++++
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred CceEecccCcccccchhhHhhcccccEEEccC
Confidence 5555555 333445433 5678888888876
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=4e-13 Score=130.76 Aligned_cols=125 Identities=15% Similarity=0.053 Sum_probs=92.4
Q ss_pred ccCceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCccc
Q 041097 127 LRENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLR 205 (391)
Q Consensus 127 ~~~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~ 205 (391)
.....+.+.+..+.... + .... ++++.|.+..+.... . .+..++.|++|++++|.+..+| ++.+.+|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~-~~~~l~~L~~L~Ls~N~l~~-----~--~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-L-DLSQNTNLTYLACDSNKLTN-----L--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSC-----C--CCTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCe-E-ccccCCCCCEEECcCCCCce-----e--ecCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 45678888887333333 2 2234 889999887766541 2 2778999999999999998876 89999999
Q ss_pred EEEccCCCCCccCCC----CcEEEeeCC-ccCcc------eeeEEecc--cccchhHHhcCCCCCCEEEecC
Q 041097 206 YLKLNIPSLKSLPSS----RKILRLSGN-SQFHF------SLASLLLY--YQSLLSKSLCRLSCLESLKLAN 264 (391)
Q Consensus 206 ~L~l~~~~i~~lp~~----~~~L~l~~~-~l~~L------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~ 264 (391)
+|+++++.++.+|-. +..|++++| .+..+ +|+.|+++ ....+| ++.+++|+.|++++
T Consensus 131 ~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp EEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCS
T ss_pred EEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcC
Confidence 999999999887521 118899888 33332 78888888 455565 78888888888877
No 60
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=9.5e-14 Score=139.41 Aligned_cols=161 Identities=28% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchhHHh
Q 041097 178 FKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSL 251 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i 251 (391)
+..|+.|+++++.+..++ .++.+.+|++|+|++|.+..+|. +. .|+|++|.+. .+| .+
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-------------~l~-~l 105 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-------------DLS-SL 105 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-------------CCT-TS
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-------------CCh-hh
Confidence 344444455544444433 34444455555555544444432 11 3333333333 222 35
Q ss_pred cCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCccc
Q 041097 252 CRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMP 331 (391)
Q Consensus 252 ~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (391)
+.+++|++|++++.. +.. +|.+..+ ++|+.|+|++|.+... +.++.+++|+.|+|+.|...+..+ ...++
T Consensus 106 ~~l~~L~~L~Ls~N~----l~~-l~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 175 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG----ISD-INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 175 (605)
T ss_dssp TTCTTCCEEECTTSC----CCC-CGGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred ccCCCCCEEEecCCC----CCC-CccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC
Confidence 555555555555411 000 2234445 5555555555554442 445555555555555444333211 34455
Q ss_pred ccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 332 KLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 332 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+|+.|+|++| .+..+| .+..+++|+.|++++|+
T Consensus 176 ~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 5555555555 344444 35555555555555543
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=2.9e-13 Score=133.92 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=68.6
Q ss_pred CceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
.+++.+.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..+|.. .+.+|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 567777776333332111222 3 67777777655432 12345677788888888888888777766 7788888
Q ss_pred EEccCCCCCc--cCCCCc------EEEeeCCccCcc------ee--eEEecc
Q 041097 207 LKLNIPSLKS--LPSSRK------ILRLSGNSQFHF------SL--ASLLLY 242 (391)
Q Consensus 207 L~l~~~~i~~--lp~~~~------~L~l~~~~l~~L------~L--~~L~l~ 242 (391)
|++++|.+.. +|..++ +|++++|.+... +| +.|+++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEee
Confidence 8888888775 455555 788887765432 33 777666
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=5e-13 Score=133.62 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=72.6
Q ss_pred CceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
.+++.+.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..+|.. .+.+|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCE
Confidence 567777777333333122233 3 77888777665442 12235577788888888888888888776 7888888
Q ss_pred EEccCCCCCccC--CCCc------EEEeeCCccCcc--------eeeEEecc
Q 041097 207 LKLNIPSLKSLP--SSRK------ILRLSGNSQFHF--------SLASLLLY 242 (391)
Q Consensus 207 L~l~~~~i~~lp--~~~~------~L~l~~~~l~~L--------~L~~L~l~ 242 (391)
|++++|.+..+| ..++ +|++++|.+... +|+.|+++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEee
Confidence 888888887765 4444 888888866532 44888877
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=1.1e-13 Score=139.47 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=119.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCC-CCccC----CCCcEEE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPS-LKSLP----SSRKILR 225 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~-i~~lp----~~~~~L~ 225 (391)
+.++.+.+.+.... .++ .+..++.|+.|++++|.+..+| .+ .+.+|++|+++++. +...+ +.+..|+
T Consensus 285 ~~L~~L~l~~~~~~-----~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK-----YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCCC-----CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred CCCCEEEecCccch-----hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 56666666554433 121 4455556666666666665555 33 55566666665552 21111 0111555
Q ss_pred eeCCccCcc-----------eeeEEecc--cccchhHHhcCCCCCCEEEecCCC-----------CCCchhhh-------
Q 041097 226 LSGNSQFHF-----------SLASLLLY--YQSLLSKSLCRLSCLESLKLANES-----------KMPRRSNI------- 274 (391)
Q Consensus 226 l~~~~l~~L-----------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~-----------~lp~L~~L------- 274 (391)
+++|.+..+ +|+.|+++ ....+|..++.+++|++|++++.. .++.|+.|
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 555543321 45555555 233444455555555555555410 01112111
Q ss_pred ---cc-ccccCCCCccEEEeecccCCCC-ChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccc-h
Q 041097 275 ---IL-AEYQFPPSLTHLSFSNIELMDD-PIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRI-H 348 (391)
Q Consensus 275 ---lp-~~~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p 348 (391)
.| .++.+ ++|+.|++++|.+... .+..++.+++|+.|+++.|...+..+...+.+++|++|++++|. +..+ |
T Consensus 437 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 514 (606)
T 3vq2_A 437 KIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDS 514 (606)
T ss_dssp EECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEG
T ss_pred CccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCH
Confidence 44 56777 8888888888876652 34567788888888888665544333334678889999999884 5554 7
Q ss_pred HhhcCCCCCCEEEeeCCc
Q 041097 349 EQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 349 ~~~~~l~~L~~L~l~~~~ 366 (391)
.++..+++|++|+++++.
T Consensus 515 ~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp GGTTTCTTCCEEECTTSC
T ss_pred HHccCCCcCCEEECCCCc
Confidence 888889999999988775
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.5e-13 Score=118.14 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=117.5
Q ss_pred ccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCC
Q 041097 176 KMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLS 255 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~ 255 (391)
.+++.|+.|+++++.+..+| .+..+.+|++|+++++.+..+ +.++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-------------------------------~~l~~l~ 88 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-------------------------------NPISGLS 88 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-------------------------------GGGTTCT
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-------------------------------hhhhcCC
Confidence 45667888899888888777 688888888888888755432 3577889
Q ss_pred CCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccc
Q 041097 256 CLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLE 334 (391)
Q Consensus 256 ~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 334 (391)
+|++|++++.. +....| .++.+ ++|+.|++++|.+....+..++.+++|+.|+++.|..... ....+.+++|+
T Consensus 89 ~L~~L~l~~n~----l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~ 162 (197)
T 4ezg_A 89 NLERLRIMGKD----VTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELK 162 (197)
T ss_dssp TCCEEEEECTT----CBGGGSCCCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCC
T ss_pred CCCEEEeECCc----cCcccChhhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCC
Confidence 99999998722 111134 77788 9999999999998876678899999999999996652332 23457889999
Q ss_pred eeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 335 CLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 335 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+|++++| .++.++ .+..+++|++|++++++
T Consensus 163 ~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 163 SLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 9999988 478887 78899999999999876
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=3.9e-13 Score=121.68 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=144.7
Q ss_pred ccCceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcc-cCCCCcc
Q 041097 127 LRENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSG-IENLFLL 204 (391)
Q Consensus 127 ~~~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~-i~~l~~L 204 (391)
....++.+.+....... +..... +.++.|.+.++... .+ +.+..++.|++|++++|.+..++.. ++++.+|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~-----~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLH-----DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCC-----CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCC-----Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 34567777776332222 333334 88888887766543 12 4678899999999999999977654 6899999
Q ss_pred cEEEccCCCCCccCCCC-c------EEEeeCCccCcceeeEEecccccchhH-HhcCCCCCCEEEecCCCCCCchhhhcc
Q 041097 205 RYLKLNIPSLKSLPSSR-K------ILRLSGNSQFHFSLASLLLYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNIIL 276 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~~~-~------~L~l~~~~l~~L~L~~L~l~~~~~lp~-~i~~l~~L~~L~l~~~~~lp~L~~Llp 276 (391)
++|++++|.+..+|... . +|++++|.+. .+|. .++.+++|++|++++.. +.. +|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~----l~~-~~ 173 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------SLPKGVFDKLTNLTELDLSYNQ----LQS-LP 173 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSC----CCC-CC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------------ccCHHHhccCccCCEEECCCCC----cCc-cC
Confidence 99999999999887653 2 7788777776 5554 46889999999998722 011 23
Q ss_pred --ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCC
Q 041097 277 --AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 277 --~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l 354 (391)
.++.+ ++|+.|++++|.+...+...++.+++|+.|+++.|.+. +.+|+|+.|++..+.--..+|.+++.+
T Consensus 174 ~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 174 EGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHhcCC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 45778 89999999999888877677889999999999866554 446788888888775445788887766
Q ss_pred CC
Q 041097 355 KS 356 (391)
Q Consensus 355 ~~ 356 (391)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=1.7e-13 Score=121.57 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=119.2
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCc-cccCCc-ccCCCCcccEEEccC-CCCCccCCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLV-LIRYPS-GIENLFLLRYLKLNI-PSLKSLPSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~-~i~~l~~L~~L~l~~-~~i~~lp~~~~----- 222 (391)
..++.|.+.+.... ...+..+..++.|+.|++++|. +..++. .+..+.+|++|++++ +.++.+|....
T Consensus 31 ~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 56777776655442 1122356667777777877775 665554 567777777777776 77777664331
Q ss_pred --EEEeeCCccCcceeeEEecccccchhHHhcCCCCCC---EEEecCC-CCCCchhhhcc--ccccCCCCcc-EEEeecc
Q 041097 223 --ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLE---SLKLANE-SKMPRRSNIIL--AEYQFPPSLT-HLSFSNI 293 (391)
Q Consensus 223 --~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~---~L~l~~~-~~lp~L~~Llp--~~~~l~~~L~-~L~l~~~ 293 (391)
.|++++|.+. .+|. ++.+++|+ +|++++. . +.. +| .+..+ ++|+ .|++++|
T Consensus 107 L~~L~l~~n~l~-------------~lp~-~~~l~~L~~L~~L~l~~N~~----l~~-i~~~~~~~l-~~L~~~L~l~~n 166 (239)
T 2xwt_C 107 LKFLGIFNTGLK-------------MFPD-LTKVYSTDIFFILEITDNPY----MTS-IPVNAFQGL-CNETLTLKLYNN 166 (239)
T ss_dssp CCEEEEEEECCC-------------SCCC-CTTCCBCCSEEEEEEESCTT----CCE-ECTTTTTTT-BSSEEEEECCSC
T ss_pred CCEEeCCCCCCc-------------cccc-cccccccccccEEECCCCcc----hhh-cCcccccch-hcceeEEEcCCC
Confidence 5555555555 5665 77777777 8888762 2 111 33 46667 7888 8888888
Q ss_pred cCCCCChhhhcCCCCCCEEEcCCCC-CcCccccCCCcc-cccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 294 ELMDDPIPALEKLSVLQVLKLKQNL-YSEERTMGIRAM-PKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 294 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
.+...+...+.. ++|+.|+++.|. ...........+ ++|+.|+++++ .++.+|.. .+++|++|++.+++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCcc
Confidence 776544334444 788888888553 332111122456 78888888876 47777755 67788888887765
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=4e-13 Score=122.81 Aligned_cols=169 Identities=23% Similarity=0.169 Sum_probs=134.3
Q ss_pred hccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcceeeEEecccccch
Q 041097 175 CKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHFSLASLLLYYQSLL 247 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L~L~~L~l~~~~~l 247 (391)
+.+++.++.++++++.+..+|..+. .++++|+++++.+..++.. +. .|++++|.+. .+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-------------KL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-------------EE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-------------cc
Confidence 4677889999999999999998776 5899999999998876532 32 7777777766 56
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG 326 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 326 (391)
+.. +.+++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|.........
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~----l~~-l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQ----LQS-LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp ECC-SCCTTCCEEECCSSC----CSS-CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cCC-CCCCcCCEEECCCCc----CCc-CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 554 789999999999832 000 56 67788 99999999999998887788999999999999977665422222
Q ss_pred CCcccccceeeeccccccccchHh-hcCCCCCCEEEeeCCc
Q 041097 327 IRAMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELWWPE 366 (391)
Q Consensus 327 ~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 366 (391)
...+++|+.|+++++ +++.+|.. +..+++|++|+++++.
T Consensus 144 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 144 LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 357889999999988 58899865 4789999999998765
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=5.3e-13 Score=123.12 Aligned_cols=188 Identities=18% Similarity=0.132 Sum_probs=140.2
Q ss_pred cCceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccE
Q 041097 128 RENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRY 206 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~ 206 (391)
..+++.+.+....... +..... ++++.|.+.++... .+++ +..++.|++|++++|.+..++ .+..+.+|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~-----~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQIT-----DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCC-----CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 4567888877332222 333233 88888888766543 2323 889999999999999998765 7899999999
Q ss_pred EEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcccccc
Q 041097 207 LKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQ 280 (391)
Q Consensus 207 L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~ 280 (391)
|++++|.+..+|. +. .|++++|.+. .++. ++.+++|++|++++.. +.. +|.+..
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------~~~~-l~~l~~L~~L~l~~n~----l~~-~~~l~~ 171 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-------------NISP-LAGLTNLQYLSIGNAQ----VSD-LTPLAN 171 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CCGG-GGGCTTCCEEECCSSC----CCC-CGGGTT
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccC-------------cCcc-ccCCCCccEEEccCCc----CCC-ChhhcC
Confidence 9999999988774 33 7777777776 6655 8899999999998722 000 334667
Q ss_pred CCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchH
Q 041097 281 FPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHE 349 (391)
Q Consensus 281 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 349 (391)
+ ++|+.|++++|.+...+ .+..+++|+.|+++.|...+.. +...+++|+.|++++|. +...|.
T Consensus 172 l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 172 L-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp C-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred C-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCe-eecCCe
Confidence 8 99999999999887644 3889999999999977665433 35788999999999885 666554
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=6.2e-13 Score=135.89 Aligned_cols=235 Identities=20% Similarity=0.141 Sum_probs=138.9
Q ss_pred cCceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCc-ccCCCCcc
Q 041097 128 RENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPS-GIENLFLL 204 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~-~i~~l~~L 204 (391)
+.+++.+.+..+.......... + ++++.|.+..+... ...+..+.+++.|++|++++|.+..+|. .++++.+|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 3567788777333333122223 3 77888877655432 1233567788888888888888887776 58888888
Q ss_pred cEEEccCCCCCccCC-CCc------EEEeeCCccCcc---------eeeEEecc--cccchh-HHh--cCCCCCCEEEec
Q 041097 205 RYLKLNIPSLKSLPS-SRK------ILRLSGNSQFHF---------SLASLLLY--YQSLLS-KSL--CRLSCLESLKLA 263 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~-~~~------~L~l~~~~l~~L---------~L~~L~l~--~~~~lp-~~i--~~l~~L~~L~l~ 263 (391)
++|+++++.+..+|+ .++ +|++++|.+... +|++|+++ ....++ ..+ ..+++|++|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 888888888887764 343 888888865543 67777777 233333 333 245677777776
Q ss_pred CCC--C--------CCch---------------------------hhh----------cc-ccccCC-CCccEEEeeccc
Q 041097 264 NES--K--------MPRR---------------------------SNI----------IL-AEYQFP-PSLTHLSFSNIE 294 (391)
Q Consensus 264 ~~~--~--------lp~L---------------------------~~L----------lp-~~~~l~-~~L~~L~l~~~~ 294 (391)
+.. . ++.| +.| .| ++..++ ++|+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 511 0 0111 111 12 333330 236777777666
Q ss_pred CCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecccccc-----ccchH----hhcCCCCCCEEEeeCC
Q 041097 295 LMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHL-----KRIHE----QLWCLKSLNKLELWWP 365 (391)
Q Consensus 295 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-----~~lp~----~~~~l~~L~~L~l~~~ 365 (391)
+...+...++.+++|++|+++.|...+..+...+.+++|++|+++++..- ..+|. .+..+++|++|+++++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 65555556666777777777755444322223356667777777654311 12332 5566777777777765
Q ss_pred c
Q 041097 366 E 366 (391)
Q Consensus 366 ~ 366 (391)
.
T Consensus 340 ~ 340 (680)
T 1ziw_A 340 D 340 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 70
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=3.8e-14 Score=134.96 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=116.0
Q ss_pred hccCCcccEEEcCCCcccc-----CCcccCCCCcccEEEccCCCCC-----ccC---------------CCCcEEEeeCC
Q 041097 175 CKMFKFLRVLDLGSLVLIR-----YPSGIENLFLLRYLKLNIPSLK-----SLP---------------SSRKILRLSGN 229 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~~-----~p~~i~~l~~L~~L~l~~~~i~-----~lp---------------~~~~~L~l~~~ 229 (391)
+..++.|++|++++|.+.. +|..+.++.+|++|++++|.+. .++ ..+.+|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3455666666666665543 4445555566666666665553 122 12224444444
Q ss_pred ccCcceeeEEecccccchh---HHhcCCCCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeecccCC----CCCh
Q 041097 230 SQFHFSLASLLLYYQSLLS---KSLCRLSCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNIELM----DDPI 300 (391)
Q Consensus 230 ~l~~L~L~~L~l~~~~~lp---~~i~~l~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~----~~~~ 300 (391)
.+. ...+| ..+..+++|++|++++.. .-.....+.| .+..+ ++|+.|+|++|.+. ...+
T Consensus 170 ~l~-----------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 170 RLE-----------NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCT-----------GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHH
T ss_pred CCC-----------cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHH
Confidence 432 12444 578889999999998722 1001111256 77788 99999999999875 2234
Q ss_pred hhhcCCCCCCEEEcCCCCCcCcc------ccCCCcccccceeeecccccccc-----chHhh-cCCCCCCEEEeeCCc
Q 041097 301 PALEKLSVLQVLKLKQNLYSEER------TMGIRAMPKLECLIINPYAHLKR-----IHEQL-WCLKSLNKLELWWPE 366 (391)
Q Consensus 301 ~~l~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~-~~l~~L~~L~l~~~~ 366 (391)
..+..+++|+.|+++.|...... .+..+.+++|++|++++|. +.. +|..+ .++++|++|++++|+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 67789999999999977654431 1112458999999999885 665 88888 678999999998865
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=1.4e-13 Score=133.81 Aligned_cols=163 Identities=23% Similarity=0.188 Sum_probs=104.3
Q ss_pred ccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc---EEEeeCCccCcc-----eeeEEecc--cccchhHH
Q 041097 181 LRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK---ILRLSGNSQFHF-----SLASLLLY--YQSLLSKS 250 (391)
Q Consensus 181 L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~---~L~l~~~~l~~L-----~L~~L~l~--~~~~lp~~ 250 (391)
++.|+++++.+..+|.. ..+|++|+++++.+..+|..+. .|++++|.+..+ +|+.|+++ ....+| +
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-C
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-c
Confidence 47888888887777653 3578888888888887776554 888888877665 78999998 455677 5
Q ss_pred hcCCCCCCEEEecCCC--CCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC
Q 041097 251 LCRLSCLESLKLANES--KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR 328 (391)
Q Consensus 251 i~~l~~L~~L~l~~~~--~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 328 (391)
++++++|++|++++.. . +|. .. .+|+.|++++|.+...+ .++.+++|+.|+++.|...+.. .
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-------lp~--~~-~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~----~ 212 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-------LPD--LP-PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP----D 212 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-------CCC--CC-TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----C
T ss_pred cCCCCCCCEEECCCCcCcc-------cCC--Cc-ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC----C
Confidence 9999999999998722 1 221 12 56666777666655532 4666666666666655443211 1
Q ss_pred cccccceeeeccccccccchHhhcCCCCCCEEEeeCC
Q 041097 329 AMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 365 (391)
.+++|++|++++| .++.+| .++.+++|++|+++++
T Consensus 213 ~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 213 LPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCC
Confidence 1235555555555 344555 2455555555555443
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=4.6e-13 Score=133.78 Aligned_cols=190 Identities=19% Similarity=0.136 Sum_probs=116.6
Q ss_pred HhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc----E----------------------EEe
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK----I----------------------LRL 226 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~----~----------------------L~l 226 (391)
..+..++.|+.|+++++.+..+|..+..+ +|++|+++++.+..+|.... . |++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 45566778888888888888888877777 88888888877776665321 4 444
Q ss_pred eCCccCcc-----------eeeEEecc--cccchhHHhcCCCCCCEEEecCCC-----------CCCchhhh--------
Q 041097 227 SGNSQFHF-----------SLASLLLY--YQSLLSKSLCRLSCLESLKLANES-----------KMPRRSNI-------- 274 (391)
Q Consensus 227 ~~~~l~~L-----------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~-----------~lp~L~~L-------- 274 (391)
++|.+... +|+.|+++ ....+|..++.+++|++|++.+.. .+++|+.|
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 44433321 45555555 233344445566666666665410 01222222
Q ss_pred --cc-ccccCCCCccEEEeecccCCC-CChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccch-H
Q 041097 275 --IL-AEYQFPPSLTHLSFSNIELMD-DPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIH-E 349 (391)
Q Consensus 275 --lp-~~~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~ 349 (391)
.| .+..+ ++|+.|++.+|.+.. ..+..++.+++|+.|+++.|...+..+...+.+++|++|++++| +++.+| .
T Consensus 435 ~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 435 VAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp ECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHH
Confidence 33 45556 666777776666542 22245666777777777755444322233467888999999887 466665 4
Q ss_pred hhcCCCCCCEEEeeCC
Q 041097 350 QLWCLKSLNKLELWWP 365 (391)
Q Consensus 350 ~~~~l~~L~~L~l~~~ 365 (391)
.+..+++|++|+++++
T Consensus 513 ~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhhcccCCcEEEecCC
Confidence 5788899999998874
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.9e-13 Score=132.29 Aligned_cols=178 Identities=20% Similarity=0.156 Sum_probs=109.5
Q ss_pred CcccEEEcCCCccc-cCCccc-----CCCCcccEEEccCCCCCccC----------CCCc--------------------
Q 041097 179 KFLRVLDLGSLVLI-RYPSGI-----ENLFLLRYLKLNIPSLKSLP----------SSRK-------------------- 222 (391)
Q Consensus 179 ~~L~~L~l~~~~l~-~~p~~i-----~~l~~L~~L~l~~~~i~~lp----------~~~~-------------------- 222 (391)
..|+.|++++|.+. .+|..+ +++.+|+.++++++.+ .+| ..+.
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 47888888888877 788888 7888888888877776 566 1222
Q ss_pred --EEEeeCCccCcc---------eeeEEecc--ccc---chhHHhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCC
Q 041097 223 --ILRLSGNSQFHF---------SLASLLLY--YQS---LLSKSLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPS 284 (391)
Q Consensus 223 --~L~l~~~~l~~L---------~L~~L~l~--~~~---~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~ 284 (391)
+|++++|.+... +|+.|+++ ... .+|..++.+++|++|++++.. +..-+| .+..+ ++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~----l~~~l~~~~~~~l-~~ 400 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS----VSYDEKKGDCSWT-KS 400 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC----CBCCGGGCSCCCC-TT
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc----CCcccccchhccC-cc
Confidence 455555444331 45555555 222 334455555555555555411 000033 24455 66
Q ss_pred ccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hcCCCCCCEEEee
Q 041097 285 LTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LWCLKSLNKLELW 363 (391)
Q Consensus 285 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~ 363 (391)
|+.|++++|.+....+..+. ++|+.|+++.|... ..+.....+++|++|++++| .++.+|.. +..+++|++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 77777776665432222221 57777777755444 22222357889999999988 58889876 7889999999998
Q ss_pred CCc
Q 041097 364 WPE 366 (391)
Q Consensus 364 ~~~ 366 (391)
++|
T Consensus 477 ~N~ 479 (520)
T 2z7x_B 477 TNP 479 (520)
T ss_dssp SSC
T ss_pred CCC
Confidence 755
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=1.3e-12 Score=136.72 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCc-cccC-CcccCCCCcccEEEccCCCCCcc-CCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLV-LIRY-PSGIENLFLLRYLKLNIPSLKSL-PSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~-p~~i~~l~~L~~L~l~~~~i~~l-p~~~~----- 222 (391)
+.++.|.+..+... ...+..+..++.|++|++++|. +..+ |..++++.+|++|++++|.+..+ |..++
T Consensus 24 ~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 88999998876543 1234567899999999999995 4355 78899999999999999999876 66665
Q ss_pred -EEEeeCCccCc-------c----eeeEEecc--cccch--hHHhcCCCCCCEEEecC
Q 041097 223 -ILRLSGNSQFH-------F----SLASLLLY--YQSLL--SKSLCRLSCLESLKLAN 264 (391)
Q Consensus 223 -~L~l~~~~l~~-------L----~L~~L~l~--~~~~l--p~~i~~l~~L~~L~l~~ 264 (391)
+|++++|.+.. + +|++|+++ ....+ ++.++++++|++|++++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99999997654 2 89999999 33333 46799999999999988
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=134.61 Aligned_cols=164 Identities=21% Similarity=0.155 Sum_probs=110.3
Q ss_pred cCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCcc---CC------CCcEEEeeCCccCcc--------eeeEE
Q 041097 177 MFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSL---PS------SRKILRLSGNSQFHF--------SLASL 239 (391)
Q Consensus 177 ~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~l---p~------~~~~L~l~~~~l~~L--------~L~~L 239 (391)
.++.|+.|+++++.+...... ..+.+|++|+++++.+... |. .+..|++++|.+..+ +|+.|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 401 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEE
Confidence 445555555555554422211 5677888888888877654 22 223888888765543 67777
Q ss_pred ecc--cccch-h-HHhcCCCCCCEEEecCCC----------CCCchhhh-----------cc-ccccCCCCccEEEeecc
Q 041097 240 LLY--YQSLL-S-KSLCRLSCLESLKLANES----------KMPRRSNI-----------IL-AEYQFPPSLTHLSFSNI 293 (391)
Q Consensus 240 ~l~--~~~~l-p-~~i~~l~~L~~L~l~~~~----------~lp~L~~L-----------lp-~~~~l~~~L~~L~l~~~ 293 (391)
+++ ..... | ..+..+++|++|++++.. .+++|+.| +| .++.+ ++|+.|++++|
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n 480 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQC 480 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTS
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc-cCCCEEECCCC
Confidence 777 22222 2 356677777777776611 12333333 66 78889 99999999999
Q ss_pred cCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecccc
Q 041097 294 ELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYA 342 (391)
Q Consensus 294 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 342 (391)
.+....+..++.+++|+.|+++.|...+......+.+++|+.|++++++
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9888767889999999999999776655322224688999999999885
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=1.1e-13 Score=127.80 Aligned_cols=180 Identities=23% Similarity=0.252 Sum_probs=136.9
Q ss_pred ccEEEcCCCccc--cCCcccC-------CCCcccEEEccCCCCC-ccCCCC--c------EEEeeCCccCcc--------
Q 041097 181 LRVLDLGSLVLI--RYPSGIE-------NLFLLRYLKLNIPSLK-SLPSSR--K------ILRLSGNSQFHF-------- 234 (391)
Q Consensus 181 L~~L~l~~~~l~--~~p~~i~-------~l~~L~~L~l~~~~i~-~lp~~~--~------~L~l~~~~l~~L-------- 234 (391)
|+.|+++++.+. .+|..+. ++.+|++|+++++.+. .+|..+ . +|++++|.+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 788899998885 5666665 7899999999999988 678765 3 999999987642
Q ss_pred -----eeeEEecc--cccchh-HHhcCCCCCCEEEecCCCCCCchhhhcc-cc--ccCCCCccEEEeecccCCCCC---h
Q 041097 235 -----SLASLLLY--YQSLLS-KSLCRLSCLESLKLANESKMPRRSNIIL-AE--YQFPPSLTHLSFSNIELMDDP---I 300 (391)
Q Consensus 235 -----~L~~L~l~--~~~~lp-~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~--~~l~~~L~~L~l~~~~~~~~~---~ 300 (391)
+|++|+++ ....++ ..++++++|++|++++........ +| .+ ..+ ++|+.|++++|.+...+ .
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKF-PTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--HHHHSCTTSC-TTCCEEECTTSCCCCHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--HHHHHHhccC-CCCCEEECCCCcCcchHHHHH
Confidence 68899988 444555 788899999999998721000000 23 33 788 99999999999887422 2
Q ss_pred hhhcCCCCCCEEEcCCCCCcCccccC-CCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 301 PALEKLSVLQVLKLKQNLYSEERTMG-IRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 301 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
..+..+++|+.|+++.|...+..+.. ...+++|++|++++| .++.+|.++. ++|++|+++++.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC
Confidence 34468899999999988776644223 246789999999988 4889998876 899999999875
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=9.5e-13 Score=131.00 Aligned_cols=195 Identities=19% Similarity=0.105 Sum_probs=115.6
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCC-Cc------
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSS-RK------ 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-~~------ 222 (391)
+.++.|.+.++... ...+..+..++.|++|++++|.+..++ ..++++.+|++|++++|.+..+|.. ++
T Consensus 26 ~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 45666655544432 111234566667777777777766443 5566777777777777766665543 22
Q ss_pred EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCCh
Q 041097 223 ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPI 300 (391)
Q Consensus 223 ~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~ 300 (391)
+|++++|.+. ...+|..++++++|++|++++...+ .. +| .++.+ ++|+.|++++|.+....+
T Consensus 102 ~L~Ls~n~l~-----------~~~~~~~~~~l~~L~~L~L~~n~~~---~~-~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 102 YLNLMGNPYQ-----------TLGVTSLFPNLTNLQTLRIGNVETF---SE-IRRIDFAGL-TSLNELEIKALSLRNYQS 165 (549)
T ss_dssp EEECTTCCCS-----------SSCSSCSCTTCTTCCEEEEEESSSC---CE-ECTTTTTTC-CEEEEEEEEETTCCEECT
T ss_pred EEECCCCccc-----------ccchhhhhhccCCccEEECCCCccc---cc-cCHhhhhcc-cccCeeeccCCcccccCh
Confidence 5555555444 0123566777788888877761100 00 22 56677 788888888877766555
Q ss_pred hhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccc---hHh-hcCCCCCCEEEeeCCc
Q 041097 301 PALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRI---HEQ-LWCLKSLNKLELWWPE 366 (391)
Q Consensus 301 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---p~~-~~~l~~L~~L~l~~~~ 366 (391)
..++.+++|+.|+++.|..........+.+++|++|++++|. +..+ |.. ...+++|++|++.++.
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc
Confidence 677778888888887444321111111347788888888774 5544 222 2456788888888764
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=2.2e-12 Score=112.97 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=78.2
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++++++.+..+|..+. .+++.|+++++.+..+|. ..+..+++|+.|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~-----------------------------~~~~~l~~L~~L~ 62 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPP-----------------------------GAFSPYKKLRRID 62 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECT-----------------------------TSSTTCTTCCEEE
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCH-----------------------------hHhhCCCCCCEEE
Confidence 456777777777776654 466777777776665543 2344555555555
Q ss_pred ecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecc
Q 041097 262 LANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINP 340 (391)
Q Consensus 262 l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (391)
+++.. +..+.| .+..+ ++|++|+|++|.+...+...+..+++|+.|+++.|..........+.+++|++|++++
T Consensus 63 Ls~N~----i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 63 LSNNQ----ISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCSSC----CCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCc----CCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 55411 000023 44455 5555666555555554444455556666666654444332222234555566666665
Q ss_pred ccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 341 YAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 341 c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
+ .++.+|. .+..+++|++|++.++|
T Consensus 138 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 138 N-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5 2444443 35556666666665543
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=112.82 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=106.0
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++++++.+..+|..+.. .+++|+++++.+..++. +..++.+++|++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~----------------------------~~~~~~l~~L~~L~ 63 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEA----------------------------TGIFKKLPQLRKIN 63 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECC----------------------------CCCGGGCTTCCEEE
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCc----------------------------hhhhccCCCCCEEE
Confidence 4677777777777766643 34677777766665421 12356788888888
Q ss_pred ecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecc
Q 041097 262 LANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINP 340 (391)
Q Consensus 262 l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (391)
+++.. +..+.| .+..+ ++|+.|+|++|.+...+...++.+++|++|+++.|...+..+...+.+++|+.|++++
T Consensus 64 L~~N~----i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 64 FSNNK----ITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCSSC----CCEECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCCCc----CCEECHHHhCCC-CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 87622 111123 56778 8899999998888887777788899999999987776654333446788899999987
Q ss_pred ccccccc-hHhhcCCCCCCEEEeeCCc
Q 041097 341 YAHLKRI-HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 341 c~~l~~l-p~~~~~l~~L~~L~l~~~~ 366 (391)
+ .++.+ |..+..+++|++|+++++|
T Consensus 139 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 139 N-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp S-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred C-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 7 46666 6778889999999988765
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.8e-13 Score=127.48 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=103.9
Q ss_pred ccCCcccEEEcCCCccc-c-CCcccCCCCcccEEEccCCCCC-ccCCCCc------EEEeeCC-ccCcceeeEEeccccc
Q 041097 176 KMFKFLRVLDLGSLVLI-R-YPSGIENLFLLRYLKLNIPSLK-SLPSSRK------ILRLSGN-SQFHFSLASLLLYYQS 245 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~-~-~p~~i~~l~~L~~L~l~~~~i~-~lp~~~~------~L~l~~~-~l~~L~L~~L~l~~~~ 245 (391)
..++.|+.|++++|.+. . +|..+..+.+|++|+++++.+. ..|..+. +|++++| .+. ..
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~-----------~~ 158 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS-----------EF 158 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC-----------HH
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC-----------HH
Confidence 35566667777666655 2 5556666667777777666554 2222221 4444444 333 11
Q ss_pred chhHHhcCCCCCCEEEecCC-CCCCchhhhcc-ccccCCC-CccEEEeeccc--CCC-CChhhhcCCCCCCEEEcCCCC-
Q 041097 246 LLSKSLCRLSCLESLKLANE-SKMPRRSNIIL-AEYQFPP-SLTHLSFSNIE--LMD-DPIPALEKLSVLQVLKLKQNL- 318 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~-~~lp~L~~Llp-~~~~l~~-~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~~- 318 (391)
.++..++.+++|++|++++. . +..-. +| .+..+ + +|+.|++++|. +.. .....++.+++|+.|+++.|.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~-l~~~~--~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFD-FTEKH--VQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTT-CCHHH--HHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred HHHHHHhcCCCCCEEcCCCCCC-cChHH--HHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 36666777888888888762 2 00000 34 45667 6 88888888873 332 223456678888888888665
Q ss_pred CcCccccCCCcccccceeeecccccccc-chHhhcCCCCCCEEEeeCC
Q 041097 319 YSEERTMGIRAMPKLECLIINPYAHLKR-IHEQLWCLKSLNKLELWWP 365 (391)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~ 365 (391)
.....+...+.+++|++|++++|..+.. ....+..+++|++|++++|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3333333446678888888888853221 1124677888888888876
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=3.6e-12 Score=126.76 Aligned_cols=153 Identities=23% Similarity=0.187 Sum_probs=98.7
Q ss_pred CcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecc--cccchhHHhcCCCC
Q 041097 179 KFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLY--YQSLLSKSLCRLSC 256 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~--~~~~lp~~i~~l~~ 256 (391)
+.|+.|++++|.+..+| +.+.+|++|++++|.+..+|. +. . +|+.|+++ ....+|. .+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~----------~-~L~~L~Ls~N~l~~lp~---~l~~ 141 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP----------A-SLKHLDVDNNQLTMLPE---LPAL 141 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC----------T-TCCEEECCSSCCSCCCC---CCTT
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh----------c-CCCEEECCCCcCCCCCC---cCcc
Confidence 34455555555544444 234445555555554444444 22 0 34444444 2226777 6899
Q ss_pred CCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCccccc---
Q 041097 257 LESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKL--- 333 (391)
Q Consensus 257 L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--- 333 (391)
|++|++++.. +.. +|. .+ ++|+.|++++|.+...+. +. ++|+.|+++.|.... ++.. ..+|
T Consensus 142 L~~L~Ls~N~----l~~-lp~--~l-~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~--lp~~--~~~L~~~ 205 (571)
T 3cvr_A 142 LEYINADNNQ----LTM-LPE--LP-TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES--LPAV--PVRNHHS 205 (571)
T ss_dssp CCEEECCSSC----CSC-CCC--CC-TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS--CCCC--C------
T ss_pred ccEEeCCCCc----cCc-CCC--cC-CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc--hhhH--HHhhhcc
Confidence 9999998722 000 343 35 899999999999887553 54 899999999776552 2221 1266
Q ss_pred ----ceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 334 ----ECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 334 ----~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.|++++| .++.+|.++..+++|++|++++++
T Consensus 206 ~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 206 EETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred cccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 99999987 588999999999999999999876
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.37 E-value=1.7e-12 Score=117.53 Aligned_cols=194 Identities=17% Similarity=0.041 Sum_probs=133.1
Q ss_pred cCceEEEEEeccCCCcccccCC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCC-cccCCCCcc
Q 041097 128 RENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYP-SGIENLFLL 204 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L 204 (391)
+..++.+.+..+.......... + ++++.|.+.++... ...+..+..++.|++|++++|.+..++ ..+.++.+|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 4568888877333333122233 3 78888887665432 122346788999999999999998655 678999999
Q ss_pred cEEEccCCCCCccCC-CCc------EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-
Q 041097 205 RYLKLNIPSLKSLPS-SRK------ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL- 276 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~-~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp- 276 (391)
++|+++++.+..++. .++ +|++++|.+. ...+|..++.+++|++|++++.. +..+.|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~l~~~~~~l~~L~~L~Ls~N~----l~~~~~~ 167 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SFKLPEYFSNLTNLEHLDLSSNK----IQSIYCT 167 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC-----------CCCCCGGGGGCTTCCEEECCSSC----CCEECGG
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccc-----------eecCchhhccCCCCCEEECCCCC----CCcCCHH
Confidence 999999999988765 233 7777777766 11378899999999999998722 000012
Q ss_pred ccccCCCCcc----EEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecccc
Q 041097 277 AEYQFPPSLT----HLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYA 342 (391)
Q Consensus 277 ~~~~l~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 342 (391)
.+..+ ++|+ .|++++|.+...+... ....+|+.|+++.|..........+.+++|+.|++++++
T Consensus 168 ~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 168 DLRVL-HQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GGHHH-HTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred Hhhhh-hhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 34444 4444 8999999887655333 344589999999776554221123678899999999764
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=9.8e-12 Score=126.97 Aligned_cols=208 Identities=17% Similarity=0.144 Sum_probs=144.0
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCC-cccCCCCcccEEEccCCCCCccCCC-------C
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYP-SGIENLFLLRYLKLNIPSLKSLPSS-------R 221 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p-~~i~~l~~L~~L~l~~~~i~~lp~~-------~ 221 (391)
+.++.+.+..+... ...+..+..++.|+.|++++|.+. .+| ..+..+.+|++|++++|.+..++.. +
T Consensus 381 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 381 SPLHILNLTKNKIS----KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp SCCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred CcCceEECCCCCCC----eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 45666655444332 122355677888888888888876 455 5778888888888888876654332 2
Q ss_pred cEEEeeCCccCcc-----------eeeEEecc--cccchhH-HhcCCCCCCEEEecCCC--CCCchhhhcc-----cccc
Q 041097 222 KILRLSGNSQFHF-----------SLASLLLY--YQSLLSK-SLCRLSCLESLKLANES--KMPRRSNIIL-----AEYQ 280 (391)
Q Consensus 222 ~~L~l~~~~l~~L-----------~L~~L~l~--~~~~lp~-~i~~l~~L~~L~l~~~~--~lp~L~~Llp-----~~~~ 280 (391)
..|++++|.+..+ +|+.|+++ ....+|+ .++.+++|++|++++.. .++.-. +| .+..
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~~~~~ 534 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA--NPGGPIYFLKG 534 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT--STTSCCCTTTT
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh--ccCCcchhhcC
Confidence 2777777755421 67777777 3445554 57888999999888721 100000 11 3678
Q ss_pred CCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHh-hc-CCCCCC
Q 041097 281 FPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQ-LW-CLKSLN 358 (391)
Q Consensus 281 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~-~l~~L~ 358 (391)
+ ++|+.|++++|.+...+...++.+++|+.|+++.|.......-....+++|+.|++++| .++.+|.. +. .+++|+
T Consensus 535 l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 535 L-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp C-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCS
T ss_pred C-CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccC
Confidence 8 99999999999988777677899999999999977665322112357789999999988 57777654 45 689999
Q ss_pred EEEeeCCc
Q 041097 359 KLELWWPE 366 (391)
Q Consensus 359 ~L~l~~~~ 366 (391)
+|+++++|
T Consensus 613 ~l~l~~N~ 620 (680)
T 1ziw_A 613 ELDMRFNP 620 (680)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99999865
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.37 E-value=5e-12 Score=127.19 Aligned_cols=210 Identities=18% Similarity=0.107 Sum_probs=140.1
Q ss_pred ceEEEEEeccCCCcccccCCCCCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEc
Q 041097 130 NVKRFTAHRKLNDFAFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKL 209 (391)
Q Consensus 130 ~~r~l~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l 209 (391)
+.+.+.+....... ++....++++.|.+.++... .++. .++.|++|++++|.+..+|. .+.+|++|++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCCTTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCc-cChhhCCCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 35566665332222 33322278999988877653 1222 57899999999999998887 6789999999
Q ss_pred cCCCCCccCCCCc---EEEeeCCccCcc-----eeeEEecc--cccchhHHhcCCCCCCEEEecCCC--CC----Cchhh
Q 041097 210 NIPSLKSLPSSRK---ILRLSGNSQFHF-----SLASLLLY--YQSLLSKSLCRLSCLESLKLANES--KM----PRRSN 273 (391)
Q Consensus 210 ~~~~i~~lp~~~~---~L~l~~~~l~~L-----~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~--~l----p~L~~ 273 (391)
++|.+..+|.... .|++++|.+..+ +|+.|+++ ....+|. .+++|+.|++.+.. .+ ++|+.
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~ 185 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPMLPSGLQE 185 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCcccCCCCcE
Confidence 9999998877444 999999988765 78888888 4445554 35678888887722 22 22322
Q ss_pred h------ccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccc
Q 041097 274 I------ILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRI 347 (391)
Q Consensus 274 L------lp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 347 (391)
| +..+...+++|+.|++.+|.+...+ ..+++|+.|+++.|...+ ++ ..+++|+.|++++| +++.+
T Consensus 186 L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~---lp-~~l~~L~~L~Ls~N-~L~~l 256 (622)
T 3g06_A 186 LSVSDNQLASLPTLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTS---LP-VLPSELKELMVSGN-RLTSL 256 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSC---CC-CCCTTCCEEECCSS-CCSCC
T ss_pred EECCCCCCCCCCCccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCc---CC-CCCCcCcEEECCCC-CCCcC
Confidence 2 1111111255666666666554433 124778888888665543 11 56688999999987 57888
Q ss_pred hHhhcCCCCCCEEEeeCCc
Q 041097 348 HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 348 p~~~~~l~~L~~L~l~~~~ 366 (391)
|. .+++|++|++++|.
T Consensus 257 p~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CC---CCTTCCEEECCSSC
T ss_pred Cc---ccccCcEEeCCCCC
Confidence 86 67889999998875
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.2e-12 Score=110.76 Aligned_cols=152 Identities=23% Similarity=0.240 Sum_probs=108.4
Q ss_pred CcccEEEcCCCccccCCcc-cCCCCcccEEEccCCCCCccCCCCc-------EEEeeCCccCcceeeEEecccccchhH-
Q 041097 179 KFLRVLDLGSLVLIRYPSG-IENLFLLRYLKLNIPSLKSLPSSRK-------ILRLSGNSQFHFSLASLLLYYQSLLSK- 249 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~~-i~~l~~L~~L~l~~~~i~~lp~~~~-------~L~l~~~~l~~L~L~~L~l~~~~~lp~- 249 (391)
+.|+.|+++++.+..++.. ++.+.+|++|+++++.+..+|.... +|++++|.+. .+|.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-------------SLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------CCCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-------------ccCHh
Confidence 4667777777776655543 5667777777777777766665431 5666666555 4444
Q ss_pred HhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCC
Q 041097 250 SLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGI 327 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 327 (391)
.++++++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|.+.
T Consensus 95 ~~~~l~~L~~L~L~~N~----l~~-~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ----LQS-LPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp TTTTCTTCCEEECCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred HhcCccCCCEEEcCCCc----Ccc-cCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 46889999999998722 011 33 46778 99999999999888777667889999999999966543
Q ss_pred CcccccceeeeccccccccchHhhcCCCC
Q 041097 328 RAMPKLECLIINPYAHLKRIHEQLWCLKS 356 (391)
Q Consensus 328 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 356 (391)
+.+++|+.|+++.+.--..+|.+++.++.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45688999999887655578888877665
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=121.24 Aligned_cols=179 Identities=21% Similarity=0.150 Sum_probs=100.3
Q ss_pred CCcccEEEcCCCccc-cCCccc--CCCCcccEEEccCCCCCccC-----------CCCcEEEeeCCccCcc---------
Q 041097 178 FKFLRVLDLGSLVLI-RYPSGI--ENLFLLRYLKLNIPSLKSLP-----------SSRKILRLSGNSQFHF--------- 234 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~-~~p~~i--~~l~~L~~L~l~~~~i~~lp-----------~~~~~L~l~~~~l~~L--------- 234 (391)
+..|+.|++++|.+. ..|..+ +.+.+|++|++++|.+.... ..+.+|++++|.+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 355777888777766 555665 77777888888777766421 1223777777766522
Q ss_pred eeeEEecccc--cc---hhHH--hcCCCCCCEEEecCCC--CCCchhhhcc-c-cccCCCCccEEEeecccCCCCChhhh
Q 041097 235 SLASLLLYYQ--SL---LSKS--LCRLSCLESLKLANES--KMPRRSNIIL-A-EYQFPPSLTHLSFSNIELMDDPIPAL 303 (391)
Q Consensus 235 ~L~~L~l~~~--~~---lp~~--i~~l~~L~~L~l~~~~--~lp~L~~Llp-~-~~~l~~~L~~L~l~~~~~~~~~~~~l 303 (391)
+|+.|+++.. .. ++.. ++.+++|++|++++.. .++. .+ + ++.+ ++|+.|++++|.+....++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAALAAAG-VQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHHHHHHT-CCCSSEECTTSCCCCCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHHHHhcC-CCCCEEECCCCCCCccchhhH
Confidence 4444444411 11 2222 2456666666665521 0000 11 1 3456 677777777776665433344
Q ss_pred cCC---CCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 304 EKL---SVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 304 ~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+.+ ++|++|+++.|.... ++.+.+++|++|++++| +++.+|. +..+++|++|++++++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~---lp~~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQ---VPKGLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCS---CCSCCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred HhccCcCcCCEEECCCCCCCc---hhhhhcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 444 577777776555441 12233467777777766 3566654 5666777777776665
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=8.9e-12 Score=111.26 Aligned_cols=144 Identities=23% Similarity=0.249 Sum_probs=84.5
Q ss_pred cccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCC-c------EEEeeCCccCcceeeEEecccccchh-HH
Q 041097 180 FLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSR-K------ILRLSGNSQFHFSLASLLLYYQSLLS-KS 250 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~-~------~L~l~~~~l~~L~L~~L~l~~~~~lp-~~ 250 (391)
.++.|+++++.+..++ ..++++.+|++|+++++.+..++... . +|++++|.+. .+| ..
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~ 102 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-------------SLPLGV 102 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------CCCTTT
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-------------ccChhH
Confidence 4555555555555333 34555555555555555555444322 1 4444444444 333 34
Q ss_pred hcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCC
Q 041097 251 LCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIR 328 (391)
Q Consensus 251 i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 328 (391)
++.+++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|+.|+++.|...........
T Consensus 103 ~~~l~~L~~L~L~~N~----l~~-~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQ----LKS-LPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp TTTCTTCCEEECCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hcccCCCCEEEcCCCc----CCC-cChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 5677788888777622 000 23 34667 7888888888877766655677788888888876655542222235
Q ss_pred cccccceeeecccc
Q 041097 329 AMPKLECLIINPYA 342 (391)
Q Consensus 329 ~~~~L~~L~l~~c~ 342 (391)
.+++|+.|++++++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 67778888887664
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=7.4e-12 Score=110.25 Aligned_cols=146 Identities=23% Similarity=0.210 Sum_probs=88.7
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++.+++.+..+|..+. .+|++|+++++.+..++ |..++.+++|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~-----------------------------~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLE-----------------------------PGVFDSLINLKELY 70 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCC-----------------------------TTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccC-----------------------------HHHhhCccCCcEEE
Confidence 356666666666666554 46666666666555432 34455666666666
Q ss_pred ecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeec
Q 041097 262 LANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIIN 339 (391)
Q Consensus 262 l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (391)
+++.. +.. +| .+..+ ++|+.|+|++|.+...+...++.+++|+.|+++.|.... .+...+.+++|++|+++
T Consensus 71 L~~N~----l~~-i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 71 LGSNQ----LGA-LPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD 143 (229)
T ss_dssp CCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECC
T ss_pred CCCCC----CCC-cChhhcccC-CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECC
Confidence 66521 000 22 34566 777777777777766655556777777777777555441 12223566777777777
Q ss_pred cccccccchH-hhcCCCCCCEEEeeCCc
Q 041097 340 PYAHLKRIHE-QLWCLKSLNKLELWWPE 366 (391)
Q Consensus 340 ~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 366 (391)
++ .++.+|. .+..+++|++|++.++|
T Consensus 144 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 144 QN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66 4666663 45677777777777654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=119.85 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=128.3
Q ss_pred cccEEEcCCCccc--cCCc--ccCCCCcccEEEccCCCCC-ccCCCC--c------EEEeeCCccCc------------c
Q 041097 180 FLRVLDLGSLVLI--RYPS--GIENLFLLRYLKLNIPSLK-SLPSSR--K------ILRLSGNSQFH------------F 234 (391)
Q Consensus 180 ~L~~L~l~~~~l~--~~p~--~i~~l~~L~~L~l~~~~i~-~lp~~~--~------~L~l~~~~l~~------------L 234 (391)
.++.+.+.++.+. .+.. ....+.+|++|+++++.+. ..|..+ . +|++++|.+.. +
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4667777777654 1111 1223456999999999887 455554 3 99999998775 2
Q ss_pred -eeeEEecc--cccch-hHHhcCCCCCCEEEecCCCCCCchhhh-cc-ccccCCCCccEEEeecccCCCCCh--h-hhcC
Q 041097 235 -SLASLLLY--YQSLL-SKSLCRLSCLESLKLANESKMPRRSNI-IL-AEYQFPPSLTHLSFSNIELMDDPI--P-ALEK 305 (391)
Q Consensus 235 -~L~~L~l~--~~~~l-p~~i~~l~~L~~L~l~~~~~lp~L~~L-lp-~~~~l~~~L~~L~l~~~~~~~~~~--~-~l~~ 305 (391)
+|+.|+++ ....+ |..++.+++|++|++++.... ....+ .+ .++.+ ++|++|++++|.+...+. . .++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhc
Confidence 89999998 34444 467889999999999872100 00001 12 34678 999999999998864321 1 3578
Q ss_pred CCCCCEEEcCCCCCcCccccCCCc---ccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 306 LSVLQVLKLKQNLYSEERTMGIRA---MPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 306 l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
+++|++|+++.|...+..+...+. +++|++|++++| .++.+|.++. ++|++|+++++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc
Confidence 899999999988776543333344 379999999988 5889998774 899999999876
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=5.9e-12 Score=115.09 Aligned_cols=165 Identities=24% Similarity=0.207 Sum_probs=115.7
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EE
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------IL 224 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L 224 (391)
++++.+.+.++... .+ +.+..++.|+.|++++|.+..++. ++++.+|++|++++|.+..+|. +. +|
T Consensus 46 ~~L~~L~l~~~~i~-----~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-----SV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTTSCCC-----CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred CcccEEEccCCCcc-----cC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45555555444332 12 346678888888888888887766 8888888888888888877664 22 67
Q ss_pred EeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhc
Q 041097 225 RLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALE 304 (391)
Q Consensus 225 ~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~ 304 (391)
++++|.+. .+ +.++.+++|++|++++.. +.. ++.+..+ ++|+.|++++|.+...+. +.
T Consensus 118 ~L~~n~i~-------------~~-~~l~~l~~L~~L~l~~n~----l~~-~~~l~~l-~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 118 SLEHNGIS-------------DI-NGLVHLPQLESLYLGNNK----ITD-ITVLSRL-TKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp ECTTSCCC-------------CC-GGGGGCTTCCEEECCSSC----CCC-CGGGGGC-TTCSEEECCSSCCCCCGG--GT
T ss_pred ECCCCcCC-------------CC-hhhcCCCCCCEEEccCCc----CCc-chhhccC-CCCCEEEccCCccccchh--hc
Confidence 77777666 44 457888999999988722 000 2356678 899999999988776543 88
Q ss_pred CCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccch
Q 041097 305 KLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIH 348 (391)
Q Consensus 305 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 348 (391)
.+++|+.|+++.|.... ......+++|+.|+++++. +...|
T Consensus 176 ~l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred CCCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCc-ccCCc
Confidence 88999999998666554 2234678889999998774 44444
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.35 E-value=1.5e-11 Score=119.54 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=75.3
Q ss_pred CceEEEEEeccCCCcccccCCC-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEE
Q 041097 129 ENVKRFTAHRKLNDFAFLDDFD-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYL 207 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L 207 (391)
...+.+.+..+.... +.. . ..++.|.+..+.... ++ .-.+.|++|++++|.+..+| .++++.+|++|
T Consensus 91 ~~L~~L~l~~n~l~~-lp~--~~~~L~~L~l~~n~l~~-----l~---~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE--LPQSLKSLLVDNNNLKA-----LS---DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC--CCTTCCEEECCSSCCSC-----CC---SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEEccCCcCCc-ccc--ccCCCcEEECCCCccCc-----cc---CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 456777766332222 211 2 677777776554321 11 11268999999999998888 59999999999
Q ss_pred EccCCCCCccCCCCc---EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecC
Q 041097 208 KLNIPSLKSLPSSRK---ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLAN 264 (391)
Q Consensus 208 ~l~~~~i~~lp~~~~---~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~ 264 (391)
+++++.+..+|..+. +|++++|.+. .+| .++++++|++|++.+
T Consensus 159 ~l~~N~l~~lp~~~~~L~~L~L~~n~l~-------------~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 159 DVDNNSLKKLPDLPPSLEFIAAGNNQLE-------------ELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCS-------------SCC-CCTTCTTCCEEECCS
T ss_pred ECCCCcCcccCCCcccccEEECcCCcCC-------------cCc-cccCCCCCCEEECCC
Confidence 999999888876655 8888888777 455 466677777776665
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=8.2e-13 Score=118.96 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=92.5
Q ss_pred hhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccch
Q 041097 174 ICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLL 247 (391)
Q Consensus 174 ~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~l 247 (391)
.+..++.|++|+++++.+..++ .++.+.+|++|++++|.+..+|. +. .|++++|.+. .+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-------------~l 100 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-------------NL 100 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-------------CC
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-------------Cc
Confidence 3566778888888888887776 67788888888888888777664 32 5566665555 44
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCC
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGI 327 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 327 (391)
|... . ++|++|++++.. +.. +|.+..+ ++|+.|++++|.+... +.++.+++|+.|+++.|...+. ...
T Consensus 101 ~~~~-~-~~L~~L~L~~N~----l~~-~~~l~~l-~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 101 NGIP-S-ACLSRLFLDNNE----LRD-TDSLIHL-KNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp TTCC-C-SSCCEEECCSSC----CSB-SGGGTTC-TTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred Cccc-c-CcccEEEccCCc----cCC-ChhhcCc-ccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHh
Confidence 4322 2 667777776622 000 2345566 7777777777766553 3566777777777775555442 233
Q ss_pred Ccccccceeeeccccccccch
Q 041097 328 RAMPKLECLIINPYAHLKRIH 348 (391)
Q Consensus 328 ~~~~~L~~L~l~~c~~l~~lp 348 (391)
..+++|+.|+++++. +...|
T Consensus 169 ~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp TTCCCCCEEEEEEEE-EECCC
T ss_pred ccCCCCCEEeCCCCc-ccCCc
Confidence 566677777777663 33333
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=1.5e-12 Score=122.93 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=72.8
Q ss_pred chhHHhcCCC-CCCEEEecCCC--CCCchhhhcc-ccccCCCCccEEEeecccCCCCCh----hhhcCC-CCCCEEEcCC
Q 041097 246 LLSKSLCRLS-CLESLKLANES--KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPI----PALEKL-SVLQVLKLKQ 316 (391)
Q Consensus 246 ~lp~~i~~l~-~L~~L~l~~~~--~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~ 316 (391)
.++..+..++ +|++|++++.. .... .. +. .+...|++|+.|+|++|.+..... ..+..+ ++|+.|+++.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~-l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNC-AE-LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCH-HH-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhH-HH-HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 4566667766 88888887722 0000 00 11 233443488888888888766442 334443 5888888886
Q ss_pred CCCcCccc----cCCCcccccceeeecccc-------ccccchHhhcCCCCCCEEEeeCCc
Q 041097 317 NLYSEERT----MGIRAMPKLECLIINPYA-------HLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 317 ~~~~~~~~----~~~~~~~~L~~L~l~~c~-------~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
|....... .....+++|++|++++|. .+..++..+..+++|++|++++++
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 66544321 112567788888888875 133455566778888888887754
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=1.9e-11 Score=105.77 Aligned_cols=146 Identities=26% Similarity=0.258 Sum_probs=79.4
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++.+++.+..+|..+. .+|++|+++++.+..+|.. .++.+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~-----------------------------~~~~l~~L~~L~ 58 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNG-----------------------------VFDELTSLTQLY 58 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-----------------------------TTTTCTTCSEEE
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChh-----------------------------hhcccccCcEEE
Confidence 456777777777776654 4788888888887766543 234555555555
Q ss_pred ecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeec
Q 041097 262 LANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIIN 339 (391)
Q Consensus 262 l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (391)
+++.. +.. +| .+..+ ++|++|++++|.+...+...++.+++|++|+++.|..........+.+++|++|+++
T Consensus 59 l~~n~----l~~-~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 59 LGGNK----LQS-LPNGVFNKL-TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCc----cCc-cChhhcCCC-CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 55411 000 22 23445 566666666555554444445555666666665444332111112445566666665
Q ss_pred cccccccchHh-hcCCCCCCEEEeeCC
Q 041097 340 PYAHLKRIHEQ-LWCLKSLNKLELWWP 365 (391)
Q Consensus 340 ~c~~l~~lp~~-~~~l~~L~~L~l~~~ 365 (391)
++ .++.+|.. +..+++|++|+++++
T Consensus 133 ~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 133 QN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CC-ccceeCHHHhccCCCccEEEecCC
Confidence 55 34444433 455566666666553
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=9e-12 Score=125.06 Aligned_cols=143 Identities=27% Similarity=0.246 Sum_probs=91.5
Q ss_pred hhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccch
Q 041097 174 ICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLL 247 (391)
Q Consensus 174 ~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~l 247 (391)
.+..++.|+.|++++|.+..++. ++.+.+|++|+|++|.+..+| .+. .|+|++|.+. .+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-------------~l 124 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-------------DI 124 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-------------CC
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-------------CC
Confidence 45667777777777777776655 777777777777777777655 232 5666665555 44
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCC
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGI 327 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 327 (391)
+.++.|++|+.|++++.. +.. ++.+..+ ++|+.|+|++|.+...++ +..+++|+.|+|+.|.... ....
T Consensus 125 -~~l~~l~~L~~L~Ls~N~----l~~-l~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--l~~l 193 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNK----ITD-ITVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRAL 193 (605)
T ss_dssp -GGGGGCTTCSEEECCSSC----CCC-CGGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--CGGG
T ss_pred -ccccCCCccCEEECCCCc----cCC-chhhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--ChHH
Confidence 346777777777777622 000 2345566 777777777777665432 6777777777777555443 2334
Q ss_pred Ccccccceeeecccc
Q 041097 328 RAMPKLECLIINPYA 342 (391)
Q Consensus 328 ~~~~~L~~L~l~~c~ 342 (391)
..+++|+.|++++|.
T Consensus 194 ~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 194 AGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCSEEECCSEE
T ss_pred ccCCCCCEEEccCCc
Confidence 567777777777664
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=8.6e-12 Score=117.58 Aligned_cols=164 Identities=23% Similarity=0.214 Sum_probs=105.0
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCC---c-----EEEeeCCccCcceeeEEecccccchh-HHhc
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSR---K-----ILRLSGNSQFHFSLASLLLYYQSLLS-KSLC 252 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~---~-----~L~l~~~~l~~L~L~~L~l~~~~~lp-~~i~ 252 (391)
++++++++.+..+|..+.. .+++|++++|.+..+|... . .|++++|.+. .++ ..+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-------------~i~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-------------FISSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-------------EECTTTTT
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-------------ccChhhcc
Confidence 3455555555555554432 3555555555555544322 1 4444444444 443 4578
Q ss_pred CCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc--cCC-C
Q 041097 253 RLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT--MGI-R 328 (391)
Q Consensus 253 ~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~-~ 328 (391)
++++|++|++++.. +..+.| .+..+ ++|+.|+|++|.+...+...+..+++|+.|+++.|....... +.. +
T Consensus 86 ~l~~L~~L~Ls~N~----l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 86 PVPNLRYLDLSSNH----LHTLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp TCTTCCEEECCSSC----CCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred CCCCCCEEECCCCc----CCcCCHHHhCCC-cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 88899999988722 111122 56778 899999999998887666788899999999999776554211 111 4
Q ss_pred cccccceeeeccccccccch-HhhcCCCC--CCEEEeeCCc
Q 041097 329 AMPKLECLIINPYAHLKRIH-EQLWCLKS--LNKLELWWPE 366 (391)
Q Consensus 329 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~--L~~L~l~~~~ 366 (391)
.+++|+.|+++++ .++.+| ..+..++. |+.|++.++|
T Consensus 161 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 161 KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 6889999999977 577877 45677776 4889998754
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=1.1e-11 Score=109.68 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=139.4
Q ss_pred cCceEEEEEeccCCCcccccCC-C-CCccEEEEEecC-CcCCCchhhHHhhccCCcccEEEcCC-CccccCC-cccCCCC
Q 041097 128 RENVKRFTAHRKLNDFAFLDDF-D-SFLHSLLYLTSG-SQYLDPTYCEKICKMFKFLRVLDLGS-LVLIRYP-SGIENLF 202 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~~~-~-~~lrsl~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~p-~~i~~l~ 202 (391)
+..++.+.+............. + ++++.|.+.++. .. ...+..+..++.|++|++++ +.+..+| ..+..+.
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 4468888887444443222234 4 899999998775 32 12224678899999999998 8998776 5678999
Q ss_pred cccEEEccCCCCCccCCCCc---------EEEeeCC-ccCcceeeEEecccccchhH-HhcCCCCCC-EEEecCCCCCCc
Q 041097 203 LLRYLKLNIPSLKSLPSSRK---------ILRLSGN-SQFHFSLASLLLYYQSLLSK-SLCRLSCLE-SLKLANESKMPR 270 (391)
Q Consensus 203 ~L~~L~l~~~~i~~lp~~~~---------~L~l~~~-~l~~L~L~~L~l~~~~~lp~-~i~~l~~L~-~L~l~~~~~lp~ 270 (391)
+|++|+++++.+..+|. +. .|++++| .+. .+|. .+..+++|+ +|++++..
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~-------------~i~~~~~~~l~~L~~~L~l~~n~---- 167 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT-------------SIPVNAFQGLCNETLTLKLYNNG---- 167 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-------------EECTTTTTTTBSSEEEEECCSCC----
T ss_pred CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh-------------hcCcccccchhcceeEEEcCCCC----
Confidence 99999999999998886 32 6677777 666 6665 588999999 99998722
Q ss_pred hhhhcc-ccccCCCCccEEEeeccc-CCCCChhhhcCC-CCCCEEEcCCCCCcCccccCCCcccccceeeeccccc
Q 041097 271 RSNIIL-AEYQFPPSLTHLSFSNIE-LMDDPIPALEKL-SVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAH 343 (391)
Q Consensus 271 L~~Llp-~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 343 (391)
+.. +| ..... ++|+.|++++|. +...+...+..+ ++|+.|+++.|.... ++...+++|+.|.++++..
T Consensus 168 l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~---l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 168 FTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA---LPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC---CCCTTCTTCSEEECTTC--
T ss_pred Ccc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc---CChhHhccCceeeccCccC
Confidence 000 45 44455 799999999994 877666778899 999999999766543 3334899999999998754
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=3.8e-14 Score=141.35 Aligned_cols=174 Identities=21% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCC--------------CCccCCCCc------EEE-eeCCccCcc
Q 041097 176 KMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPS--------------LKSLPSSRK------ILR-LSGNSQFHF 234 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~--------------i~~lp~~~~------~L~-l~~~~l~~L 234 (391)
...+.|+.|+++++.+..+|+.|+++.+|+.|+++++. ....|..++ .|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 44677888888888888888888888888888875542 111222222 333 22222111
Q ss_pred eeeEEecc--cccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEE
Q 041097 235 SLASLLLY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVL 312 (391)
Q Consensus 235 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 312 (391)
|+.+.+. ....+|. ..|+.|++++.. +.. +|.++.+ ++|+.|+|++|.+...| ..++.+++|+.|
T Consensus 425 -L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~----l~~-lp~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L 491 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEY-----ADVRVLHLAHKD----LTV-LCHLEQL-LLVTHLDLSHNRLRALP-PALAALRCLEVL 491 (567)
T ss_dssp -HHHHHHHHHHHHHHHH-----TTCSEEECTTSC----CSS-CCCGGGG-TTCCEEECCSSCCCCCC-GGGGGCTTCCEE
T ss_pred -hhhhhhhcccccccCc-----cCceEEEecCCC----CCC-CcCcccc-ccCcEeecCcccccccc-hhhhcCCCCCEE
Confidence 1111111 0111111 135555555411 000 3334445 55555555555555332 455555555555
Q ss_pred EcCCCCCcCccccCCCcccccceeeeccccccccc--hHhhcCCCCCCEEEeeCCc
Q 041097 313 KLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRI--HEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~ 366 (391)
+++.|...+ ++..+.+++|+.|++++| .++.+ |..++.+++|++|++++++
T Consensus 492 ~Ls~N~l~~--lp~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 492 QASDNALEN--VDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ECCSSCCCC--CGGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ECCCCCCCC--CcccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 555444433 223345555555555554 34444 5555555555555555544
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=2.7e-12 Score=119.50 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=124.1
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCCcccCCCCcccEEEccCC-CCCc--cCCCC-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYPSGIENLFLLRYLKLNIP-SLKS--LPSSR----- 221 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~i~~l~~L~~L~l~~~-~i~~--lp~~~----- 221 (391)
++++.|.+.++.. ....++..+..++.|+.|++++|.+. ..|..++++.+|++|++++| .+.. +|..+
T Consensus 93 ~~L~~L~L~~~~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 93 FRVQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp BCCCEEECTTCEE---CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCEEEccCCCc---CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 7788887765442 23336677889999999999999987 67788899999999999998 5662 44322
Q ss_pred -cEEEeeCC-ccCcceeeEEecccccchhHHhcCCC-CCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEeeccc-C
Q 041097 222 -KILRLSGN-SQFHFSLASLLLYYQSLLSKSLCRLS-CLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSFSNIE-L 295 (391)
Q Consensus 222 -~~L~l~~~-~l~~L~L~~L~l~~~~~lp~~i~~l~-~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~-~ 295 (391)
..|++++| .+.. ..++..++.++ +|++|++++.. .+..-. +| .+..+ ++|+.|++++|. +
T Consensus 170 L~~L~l~~~~~l~~-----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~--l~~~~~~~-~~L~~L~l~~~~~l 235 (336)
T 2ast_B 170 LDELNLSWCFDFTE-----------KHVQVAVAHVSETITQLNLSGYRKNLQKSD--LSTLVRRC-PNLVHLDLSDSVML 235 (336)
T ss_dssp CCEEECCCCTTCCH-----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHHHHHHC-TTCSEEECTTCTTC
T ss_pred CCEEcCCCCCCcCh-----------HHHHHHHHhcccCCCEEEeCCCcccCCHHH--HHHHHhhC-CCCCEEeCCCCCcC
Confidence 27777777 6651 12677788899 99999998721 010001 45 56678 899999999987 5
Q ss_pred CCCChhhhcCCCCCCEEEcCCCCCcCcc-ccCCCcccccceeeeccc
Q 041097 296 MDDPIPALEKLSVLQVLKLKQNLYSEER-TMGIRAMPKLECLIINPY 341 (391)
Q Consensus 296 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c 341 (391)
....+..++++++|+.|+++.|...... ....+.+++|++|++++|
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555678888999999999865422111 212356889999999988
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=1.8e-11 Score=110.22 Aligned_cols=142 Identities=22% Similarity=0.172 Sum_probs=104.9
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc----EEEe
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK----ILRL 226 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~----~L~l 226 (391)
++++.|.+.++... .+ +.+..++.|+.|++++|.+..++. ++++.+|++|++++|.++.+|.... .|++
T Consensus 41 ~~L~~L~l~~n~i~-----~l-~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-----SL-AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-----CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEEC
T ss_pred CcCcEEECcCCCcc-----cc-hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEc
Confidence 67777777655443 12 256778899999999998887776 8888999999999988887765332 7777
Q ss_pred eCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCC
Q 041097 227 SGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKL 306 (391)
Q Consensus 227 ~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l 306 (391)
++|.+. .++ .++.+++|++|++++.. +.. +|.++.+ ++|+.|++++|.+... ..+..+
T Consensus 114 ~~N~l~-------------~~~-~l~~l~~L~~L~Ls~N~----i~~-~~~l~~l-~~L~~L~L~~N~i~~~--~~l~~l 171 (263)
T 1xeu_A 114 DNNELR-------------DTD-SLIHLKNLEILSIRNNK----LKS-IVMLGFL-SKLEVLDLHGNEITNT--GGLTRL 171 (263)
T ss_dssp CSSCCS-------------BSG-GGTTCTTCCEEECTTSC----CCB-CGGGGGC-TTCCEEECTTSCCCBC--TTSTTC
T ss_pred cCCccC-------------CCh-hhcCcccccEEECCCCc----CCC-ChHHccC-CCCCEEECCCCcCcch--HHhccC
Confidence 777766 554 58889999999988722 000 3456678 8999999999887764 677888
Q ss_pred CCCCEEEcCCCCCcC
Q 041097 307 SVLQVLKLKQNLYSE 321 (391)
Q Consensus 307 ~~L~~L~l~~~~~~~ 321 (391)
++|+.|++++|....
T Consensus 172 ~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCCEEEEEEEEEEC
T ss_pred CCCCEEeCCCCcccC
Confidence 999999998665543
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.27 E-value=1.1e-12 Score=127.72 Aligned_cols=213 Identities=15% Similarity=0.057 Sum_probs=132.4
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCcccc-CCcccC-----CCCcccEEEccCCCCCc-----cCC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIR-YPSGIE-----NLFLLRYLKLNIPSLKS-----LPS 219 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~p~~i~-----~l~~L~~L~l~~~~i~~-----lp~ 219 (391)
++++.|.+..+.........+...+..++.|+.|++++|.+.. .+..+. ...+|++|+++++.+.. +|.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 3566666544433211111334556667777777777777652 122222 24477777777777664 333
Q ss_pred C------CcEEEeeCCccCcc--------------eeeEEecc--ccc-----chhHHhcCCCCCCEEEecCCC-CCCch
Q 041097 220 S------RKILRLSGNSQFHF--------------SLASLLLY--YQS-----LLSKSLCRLSCLESLKLANES-KMPRR 271 (391)
Q Consensus 220 ~------~~~L~l~~~~l~~L--------------~L~~L~l~--~~~-----~lp~~i~~l~~L~~L~l~~~~-~lp~L 271 (391)
. +..|++++|.+... +|+.|+++ ... .++..+..+++|++|++++.. .-...
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 2 23777777765431 67777777 222 267778888888888887621 00000
Q ss_pred hhhcc-ccc-cCCCCccEEEeecccCCCCC----hhhhcCCCCCCEEEcCCCCCcCccccCC-----Ccccccceeeecc
Q 041097 272 SNIIL-AEY-QFPPSLTHLSFSNIELMDDP----IPALEKLSVLQVLKLKQNLYSEERTMGI-----RAMPKLECLIINP 340 (391)
Q Consensus 272 ~~Llp-~~~-~l~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~ 340 (391)
.. ++ .+. .. ++|+.|++++|.+.... ...+..+++|+.|+++.|......+... ...++|++|++++
T Consensus 302 ~~-l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 302 RL-LCETLLEPG-CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HH-HHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HH-HHHHhccCC-ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 00 22 121 23 69999999999876643 3556778999999999665443221111 1267999999999
Q ss_pred ccccc-----cchHhhcCCCCCCEEEeeCCc
Q 041097 341 YAHLK-----RIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 341 c~~l~-----~lp~~~~~l~~L~~L~l~~~~ 366 (391)
|. +. .+|.++..+++|++|++++++
T Consensus 380 n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 380 CD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 84 66 688889899999999999886
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=3.2e-12 Score=121.58 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=74.3
Q ss_pred CCCCEEEecCCC----CCCchhhhcc-ccccCCCCccEEEeecccCCCC----Chh-hhcCCCCCCEEEcCCCCCcC---
Q 041097 255 SCLESLKLANES----KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDD----PIP-ALEKLSVLQVLKLKQNLYSE--- 321 (391)
Q Consensus 255 ~~L~~L~l~~~~----~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~----~~~-~l~~l~~L~~L~l~~~~~~~--- 321 (391)
++|++|++++.. .+|. +. .+..+ ++|+.|++++|.+... ..+ .+..+++|+.|+++.|....
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~----l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKE----WAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHH----HHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHH----HHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 899999998721 1111 11 44567 8999999999987632 133 67889999999999766531
Q ss_pred -ccccCCCcccccceeeecccccccc-----chHhhc--CCCCCCEEEeeCCc
Q 041097 322 -ERTMGIRAMPKLECLIINPYAHLKR-----IHEQLW--CLKSLNKLELWWPE 366 (391)
Q Consensus 322 -~~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~--~l~~L~~L~l~~~~ 366 (391)
..+.....+++|++|++++|. +.. +|.++. .+++|++|++++|.
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 111123577899999999885 543 477774 48999999999876
No 103
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.26 E-value=1.5e-11 Score=122.37 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=69.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC--CccccccccEEEEEEcCCCc--ChHHHHHHHHHhhcCCCC--CC---CCCChHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYS--SNYVKHYFDCHAWVQESLPY--DADQILYDIIKFVMPSPE--GF---IPDNNEATVEK 71 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~--~~~lk~~F~~~~~~~vs~~~--~~~~i~~~~~~~~~~~~e--g~---~~~~~~~~~~~ 71 (391)
|+||||||+||||||+.+|+ |..++.+|+.++|+++++.+ +...+++.++........ .. .....++....
T Consensus 155 v~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 234 (549)
T 2a5y_B 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRM 234 (549)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHH
Confidence 68999999999999999998 77899999999999999885 888999988887653211 11 11124556777
Q ss_pred HHHHHHcC-ccEEeeeccC
Q 041097 72 YLEQLING-GFVGAGKRSD 89 (391)
Q Consensus 72 ~~~~L~~k-~~l~~~~~~~ 89 (391)
+...|.++ +++.+.++.+
T Consensus 235 l~~~L~~~kr~LlVLDdv~ 253 (549)
T 2a5y_B 235 ICNALIDRPNTLFVFDDVV 253 (549)
T ss_dssp HHHHHTTSTTEEEEEEEEC
T ss_pred HHHHHcCCCcEEEEEECCC
Confidence 88888886 8888877643
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=2.7e-12 Score=124.86 Aligned_cols=213 Identities=18% Similarity=0.079 Sum_probs=122.0
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCcccc-CCcccC-CCC----cccEEEccCCCCC-----ccCC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIR-YPSGIE-NLF----LLRYLKLNIPSLK-----SLPS 219 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~p~~i~-~l~----~L~~L~l~~~~i~-----~lp~ 219 (391)
++++.+.+.++.........++..+..++.|++|++++|.+.. .+..+. .+. +|++|++++|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 5666666665543210011344556666777777777776552 122221 233 5777777777665 2333
Q ss_pred CCc------EEEeeCCccCcc--------------eeeEEecc-------cccchhHHhcCCCCCCEEEecCCC-CCCch
Q 041097 220 SRK------ILRLSGNSQFHF--------------SLASLLLY-------YQSLLSKSLCRLSCLESLKLANES-KMPRR 271 (391)
Q Consensus 220 ~~~------~L~l~~~~l~~L--------------~L~~L~l~-------~~~~lp~~i~~l~~L~~L~l~~~~-~lp~L 271 (391)
.+. +|++++|.+... +|++|+++ ....++..+..+++|++|++++.. .-...
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 332 777777765431 37777777 112456777788888888887611 00000
Q ss_pred hhhcc-ccc-cCCCCccEEEeecccCCCCC----hhhhcCCCCCCEEEcCCCCCcCccc--c-C--CCcccccceeeecc
Q 041097 272 SNIIL-AEY-QFPPSLTHLSFSNIELMDDP----IPALEKLSVLQVLKLKQNLYSEERT--M-G--IRAMPKLECLIINP 340 (391)
Q Consensus 272 ~~Llp-~~~-~l~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~--~-~--~~~~~~L~~L~l~~ 340 (391)
.. +. .+. .. ++|+.|++++|.+.... ...+..+++|+.|+++.|....... + + ...+++|++|++++
T Consensus 188 ~~-l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 188 RV-LCQGLKDSP-CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HH-HHHHHHHSC-CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HH-HHHHHhcCC-CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 00 11 111 24 68888888888766543 3456677888888888554432211 0 0 12467788888887
Q ss_pred cccccc-----chHhhcCCCCCCEEEeeCCc
Q 041097 341 YAHLKR-----IHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 341 c~~l~~-----lp~~~~~l~~L~~L~l~~~~ 366 (391)
| .+.. +|..+..+++|++|+++++.
T Consensus 266 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 266 C-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp S-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred C-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 7 4554 66677777778888777765
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=5.1e-11 Score=99.38 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=33.0
Q ss_pred ccCCcccEEEcCCCccc--cCCcccCCCCcccEEEccCCCCCc
Q 041097 176 KMFKFLRVLDLGSLVLI--RYPSGIENLFLLRYLKLNIPSLKS 216 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~--~~p~~i~~l~~L~~L~l~~~~i~~ 216 (391)
...+.|+.|++++|.+. .+|..+..+.+|++|++++|.+..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~ 63 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC
Confidence 34578889999999887 788888888888888888886654
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.24 E-value=2.3e-11 Score=122.78 Aligned_cols=168 Identities=18% Similarity=0.132 Sum_probs=121.4
Q ss_pred CcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCC-c------EEEeeCCccCcceeeEEecccccchhH-
Q 041097 179 KFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSR-K------ILRLSGNSQFHFSLASLLLYYQSLLSK- 249 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~-~------~L~l~~~~l~~L~L~~L~l~~~~~lp~- 249 (391)
..+++|+|++|.|..+| ..|.++.+|++|+|++|.++.+|+.. . +|+|++|++. .+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-------------~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------------SLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------EECGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-------------CCCHH
Confidence 36888999999888776 46888999999999998888887643 2 7777777776 6664
Q ss_pred HhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCC-hhhhcCCCCCCEEEcCCCCCcCccccC
Q 041097 250 SLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDP-IPALEKLSVLQVLKLKQNLYSEERTMG 326 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~ 326 (391)
.++++++|++|++++.. +.. +| .++.+ ++|+.|++++|.+.... +..++.+++|++|+++.|...+.....
T Consensus 119 ~f~~L~~L~~L~Ls~N~----l~~-l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN----LAS-LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp GGTTCTTCCEEECTTSC----CCC-STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred HhcCCCCCCEEECCCCc----CCC-CChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 68999999999998722 111 33 57889 99999999999887643 467789999999999977655432222
Q ss_pred CCccccc----ceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 327 IRAMPKL----ECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 327 ~~~~~~L----~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
...+.++ ..++++.+ .+..++........++.+++.+..
T Consensus 193 l~~L~~l~~~~~~~~ls~n-~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp GHHHHTCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccchhhhhhhhhhhhcccC-cccccCcccccchhhhhhhhhccc
Confidence 2333333 34556654 467777666666677888887764
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=5.5e-11 Score=111.53 Aligned_cols=200 Identities=16% Similarity=0.091 Sum_probs=135.2
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccc-cCC-cccCCCCcccE-EEccCCCCCccCCCCc-----
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLI-RYP-SGIENLFLLRY-LKLNIPSLKSLPSSRK----- 222 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p-~~i~~l~~L~~-L~l~~~~i~~lp~~~~----- 222 (391)
..++.|.+..+... ......|.+++.|++|++++|.+. .+| ..+.++.+++. +.+..+++..+|+...
T Consensus 30 ~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 56777777665442 112235677888888888888764 454 34567777664 4556677777755432
Q ss_pred --EEEeeCCccCcc---------eeeEEecc---cccchhH-HhcCC-CCCCEEEecCCCCCCchhhhcc-ccccCCCCc
Q 041097 223 --ILRLSGNSQFHF---------SLASLLLY---YQSLLSK-SLCRL-SCLESLKLANESKMPRRSNIIL-AEYQFPPSL 285 (391)
Q Consensus 223 --~L~l~~~~l~~L---------~L~~L~l~---~~~~lp~-~i~~l-~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L 285 (391)
+|++++|.+..+ ++..|++. ....+|. .+..+ ..++.|++++.. ++. +| ..... .+|
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~----i~~-i~~~~f~~-~~L 179 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG----IQE-IHNSAFNG-TQL 179 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC----CCE-ECTTSSTT-EEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc----ccC-CChhhccc-cch
Confidence 778887766543 45555554 3344443 33444 356777776521 010 44 44556 788
Q ss_pred cEEEeec-ccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCCCCCCEEEeeC
Q 041097 286 THLSFSN-IELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWW 364 (391)
Q Consensus 286 ~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 364 (391)
+.|.+.+ +.+...+...++.+++|+.|+++.|... .++.+.+.+|+.|.+.++.+++.+| .+..+++|+.+++.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~---~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC---CCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC---ccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 9999875 6666666677899999999999966654 3345678899999999999999999 588999999999964
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=9.2e-11 Score=102.55 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=76.8
Q ss_pred CcccEEEcCCCccccCC--cccCCCCcccEEEccCCCCCccCCC-Cc------EEEeeCCccCcceeeEEecccccchh-
Q 041097 179 KFLRVLDLGSLVLIRYP--SGIENLFLLRYLKLNIPSLKSLPSS-RK------ILRLSGNSQFHFSLASLLLYYQSLLS- 248 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p--~~i~~l~~L~~L~l~~~~i~~lp~~-~~------~L~l~~~~l~~L~L~~L~l~~~~~lp- 248 (391)
..++.|++++|.+..++ ..+..+.+|++|+++++.+..+|.. +. .|++++|.+. .++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-------------~~~~ 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-------------NVQH 98 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------CCCG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-------------ccCH
Confidence 45789999999999764 3478999999999999999877642 22 5555555554 333
Q ss_pred HHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCC
Q 041097 249 KSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLY 319 (391)
Q Consensus 249 ~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 319 (391)
..++.+++|++|++++.. +..+.| .+..+ ++|+.|+|++|.+...++..+..+++|+.|+++.|.+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNR----ITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGGTTCSSCCEEECTTSC----CCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred hHhcCCcCCCEEECCCCc----CCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 335566666666665511 000023 44555 6666666666665555445555666666666665443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=1.1e-10 Score=100.23 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCc
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNS 230 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~ 230 (391)
++++.+.+.++... .++ .+..++.|++|++++|.+..+ ..+..+.+|++|++++|.+..
T Consensus 44 ~~L~~L~l~~n~i~-----~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~-------------- 102 (197)
T 4ezg_A 44 NSLTYITLANINVT-----DLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTS-------------- 102 (197)
T ss_dssp HTCCEEEEESSCCS-----CCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBG--------------
T ss_pred CCccEEeccCCCcc-----ChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCc--------------
Confidence 55666666554432 122 467778888888888876544 477788888888888887764
Q ss_pred cCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeeccc-CCCCChhhhcCCCC
Q 041097 231 QFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIE-LMDDPIPALEKLSV 308 (391)
Q Consensus 231 l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l~~ 308 (391)
..|..++.+++|++|++++.. +....| .++.+ ++|+.|++++|. +... +.++.+++
T Consensus 103 ---------------~~~~~l~~l~~L~~L~Ls~n~----i~~~~~~~l~~l-~~L~~L~L~~n~~i~~~--~~l~~l~~ 160 (197)
T 4ezg_A 103 ---------------DKIPNLSGLTSLTLLDISHSA----HDDSILTKINTL-PKVNSIDLSYNGAITDI--MPLKTLPE 160 (197)
T ss_dssp ---------------GGSCCCTTCTTCCEEECCSSB----CBGGGHHHHTTC-SSCCEEECCSCTBCCCC--GGGGGCSS
T ss_pred ---------------ccChhhcCCCCCCEEEecCCc----cCcHhHHHHhhC-CCCCEEEccCCCCcccc--HhhcCCCC
Confidence 112334445555555554411 000022 34455 555555555554 3332 24555566
Q ss_pred CCEEEcCCCCCcCccccCCCcccccceeeeccc
Q 041097 309 LQVLKLKQNLYSEERTMGIRAMPKLECLIINPY 341 (391)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 341 (391)
|+.|+++.|.... ......+++|++|+++++
T Consensus 161 L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTBCCCC--CTTGGGCSSCCEEEECBC
T ss_pred CCEEECCCCCCcC--hHHhccCCCCCEEEeeCc
Confidence 6666665444332 113345555666665544
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=9.4e-11 Score=103.14 Aligned_cols=122 Identities=25% Similarity=0.286 Sum_probs=75.8
Q ss_pred CcccEEEcCCCccccC-CcccCCCCcccEEEccCCCCCccCCCCc-------EEEeeCCccCcceeeEEecccccchhH-
Q 041097 179 KFLRVLDLGSLVLIRY-PSGIENLFLLRYLKLNIPSLKSLPSSRK-------ILRLSGNSQFHFSLASLLLYYQSLLSK- 249 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~-p~~i~~l~~L~~L~l~~~~i~~lp~~~~-------~L~l~~~~l~~L~L~~L~l~~~~~lp~- 249 (391)
..|++|++++|.+..+ |..+..+.+|++|++++|.+..+|.... +|++++|.+. .+|.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-------------~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-------------VLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------CCCTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-------------ccChh
Confidence 6788888888887755 5667788888888888888777764431 4555555444 3333
Q ss_pred HhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCC
Q 041097 250 SLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLY 319 (391)
Q Consensus 250 ~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 319 (391)
.++.+++|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...+..+++|+.|++..|.+
T Consensus 107 ~~~~l~~L~~L~Ls~N~----l~~-lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK----LTE-LPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC----CCS-CCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc----ccc-cCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 34566666666666522 000 44 55566 6666666666666655545566666666666665544
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=9e-11 Score=102.61 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=28.0
Q ss_pred CcccEEEcCCCccccCCc-ccCCCCcccEEEccCCCCCcc
Q 041097 179 KFLRVLDLGSLVLIRYPS-GIENLFLLRYLKLNIPSLKSL 217 (391)
Q Consensus 179 ~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~l~~~~i~~l 217 (391)
+.++.|+++++.+..++. .+..+.+|++|++++|.+..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 467777888877775554 667777788888777777654
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=9.5e-11 Score=110.41 Aligned_cols=143 Identities=26% Similarity=0.207 Sum_probs=113.3
Q ss_pred ccEEEccCCCCCccCCCCc----EEEeeCCccCcceeeEEecccccchhHH-hc-CCCCCCEEEecCCCCCCchhhhcc-
Q 041097 204 LRYLKLNIPSLKSLPSSRK----ILRLSGNSQFHFSLASLLLYYQSLLSKS-LC-RLSCLESLKLANESKMPRRSNIIL- 276 (391)
Q Consensus 204 L~~L~l~~~~i~~lp~~~~----~L~l~~~~l~~L~L~~L~l~~~~~lp~~-i~-~l~~L~~L~l~~~~~lp~L~~Llp- 276 (391)
-+.++++++.+..+|..+. .|++++|.+. .++.. +. ++++|++|++++.. +..+.|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~-------------~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~ 82 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-------------RLRAEWTPTRLTNLHSLLLSHNH----LNFISSE 82 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC-------------EECTTSSSSCCTTCCEEECCSSC----CCEECTT
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCC-------------ccChhhhhhcccccCEEECCCCc----CCccChh
Confidence 3688999999998888776 9999999988 66554 55 89999999998722 111123
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhh----c
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQL----W 352 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~----~ 352 (391)
.+..+ ++|+.|+|++|.+...+...+..+++|+.|+++.|............+++|++|+++++ .++.+|..+ .
T Consensus 83 ~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 83 AFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGN 160 (361)
T ss_dssp TTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC---
T ss_pred hccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcc
Confidence 57789 99999999999988877678899999999999977765433334478899999999988 588998775 5
Q ss_pred CCCCCCEEEeeCC
Q 041097 353 CLKSLNKLELWWP 365 (391)
Q Consensus 353 ~l~~L~~L~l~~~ 365 (391)
.+++|++|+++++
T Consensus 161 ~l~~L~~L~L~~N 173 (361)
T 2xot_A 161 KLPKLMLLDLSSN 173 (361)
T ss_dssp -CTTCCEEECCSS
T ss_pred cCCcCCEEECCCC
Confidence 7999999999875
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=3.2e-11 Score=113.66 Aligned_cols=204 Identities=15% Similarity=0.082 Sum_probs=114.1
Q ss_pred ccEEEEEecCCcCCCchhhHHhhccCC-cccEEEcCCCccccC-CcccCCC-----CcccEEEccCCCCCccC-------
Q 041097 153 LHSLLYLTSGSQYLDPTYCEKICKMFK-FLRVLDLGSLVLIRY-PSGIENL-----FLLRYLKLNIPSLKSLP------- 218 (391)
Q Consensus 153 lrsl~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~-p~~i~~l-----~~L~~L~l~~~~i~~lp------- 218 (391)
++.|.+.++.........+...+..++ .|+.|++++|.+... +..+..+ .+|++|++++|.+...+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 555555444332111112224445555 566666666655522 3333332 55666666665554322
Q ss_pred -----CCCcEEEeeCCccCcceeeEEecccccchhHHhcCC-CCCCEEEecCCC-CCCchhhhcc-ccccCCCCccEEEe
Q 041097 219 -----SSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRL-SCLESLKLANES-KMPRRSNIIL-AEYQFPPSLTHLSF 290 (391)
Q Consensus 219 -----~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l-~~L~~L~l~~~~-~lp~L~~Llp-~~~~l~~~L~~L~l 290 (391)
..+.+|++++|.+... ....+...+..+ ++|++|++++.. .-..... ++ .+..+|++|+.|++
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSK--------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE-LIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGS--------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-HHHHHHTSCTTCCEEEC
T ss_pred HHhCCCCccEEECcCCcCCcH--------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-HHHHHhcCCccccEeee
Confidence 2233555555544400 011222345554 699999998722 0000000 33 45566359999999
Q ss_pred ecccCCCCChh----hhcCC-CCCCEEEcCCCCCcCcccc--C--CCc-ccccceeeeccccccccc-----hHhhcCCC
Q 041097 291 SNIELMDDPIP----ALEKL-SVLQVLKLKQNLYSEERTM--G--IRA-MPKLECLIINPYAHLKRI-----HEQLWCLK 355 (391)
Q Consensus 291 ~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~--~--~~~-~~~L~~L~l~~c~~l~~l-----p~~~~~l~ 355 (391)
++|.+...... .+..+ ++|+.|+++.|........ . ... .++|++|++++|. +... ...+..++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLK 253 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCC
Confidence 99998776644 34555 5999999997765442211 1 112 3589999999884 5543 34457889
Q ss_pred CCCEEEeeCCc
Q 041097 356 SLNKLELWWPE 366 (391)
Q Consensus 356 ~L~~L~l~~~~ 366 (391)
+|++|++++|.
T Consensus 254 ~L~~L~L~~n~ 264 (362)
T 3goz_A 254 HLQTVYLDYDI 264 (362)
T ss_dssp TCSEEEEEHHH
T ss_pred CccEEEeccCC
Confidence 99999999875
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=3.6e-12 Score=130.93 Aligned_cols=114 Identities=22% Similarity=0.153 Sum_probs=81.3
Q ss_pred hHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccc
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQ 244 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~ 244 (391)
.+..+..+..|++|+|++|.+..+|..+.++.+|++|+|++|.+..+|..++ +|+|++|.+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------------ 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT------------ 283 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS------------
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC------------
Confidence 4567788899999999999999999888899999999999999888887665 6666666666
Q ss_pred cchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhh
Q 041097 245 SLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPAL 303 (391)
Q Consensus 245 ~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l 303 (391)
.+|.+++.|++|++|++++.. +.. +| .++.+ ++|+.|+|++|.+...++..+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~----l~~-lp~~~~~l-~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNM----VTT-LPWEFGNL-CNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSC----CCC-CCSSTTSC-TTCCCEECTTSCCCSHHHHHH
T ss_pred -ccChhhcCCCCCCEEECCCCC----CCc-cChhhhcC-CCccEEeCCCCccCCCChHHH
Confidence 677777777777777777622 000 56 66777 777777777777665444444
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=1.4e-10 Score=94.64 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=73.4
Q ss_pred ccCCcccEEEcCCCccc--cCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccch
Q 041097 176 KMFKFLRVLDLGSLVLI--RYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLL 247 (391)
Q Consensus 176 ~~~~~L~~L~l~~~~l~--~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~l 247 (391)
...+.|+.|++++|.+. .+|..++.+.+|++|++++|.+..+ ..++ +|++++|.+. ..+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~------------~~~ 80 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS------------GGL 80 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCC------------SCT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCccc------------chH
Confidence 34578999999999988 8888889999999999999988765 2222 5555555444 125
Q ss_pred hHHhcCCCCCCEEEecCCCCCCchhhh-cc-ccccCCCCccEEEeecccCCCCCh---hhhcCCCCCCEEEcC
Q 041097 248 SKSLCRLSCLESLKLANESKMPRRSNI-IL-AEYQFPPSLTHLSFSNIELMDDPI---PALEKLSVLQVLKLK 315 (391)
Q Consensus 248 p~~i~~l~~L~~L~l~~~~~lp~L~~L-lp-~~~~l~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 315 (391)
|..++.+++|++|++++.. +..+ .| .++.+ ++|+.|++++|.+...+. ..++.+++|+.|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~----i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK----IKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC----CCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCc----CCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555556665555411 0000 11 34455 555555555555544432 345555555555543
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=6.3e-10 Score=95.02 Aligned_cols=126 Identities=20% Similarity=0.127 Sum_probs=76.9
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
++++++++.+..+|..+.. ++++|+++++.+..+|.. ..++.+++|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~----------------------------~~~~~l~~L~~L~ 60 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSD----------------------------GLFGRLPHLVKLE 60 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCS----------------------------CSGGGCTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCc----------------------------cccccCCCCCEEE
Confidence 5677777777777776654 677777777766654421 1255666777777
Q ss_pred ecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecc
Q 041097 262 LANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINP 340 (391)
Q Consensus 262 l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (391)
+++.. +..+.| .+..+ ++|+.|+|++|.+...+...++.+++|++|+++.|...+..+...+.+++|++|++++
T Consensus 61 Ls~N~----l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 61 LKRNQ----LTGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSC----CCCBCTTTTTTC-TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCC----CCCcCHhHcCCc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 76521 011134 55666 7777777777776665555566777777777775555443222335566667777665
Q ss_pred cc
Q 041097 341 YA 342 (391)
Q Consensus 341 c~ 342 (391)
++
T Consensus 136 N~ 137 (192)
T 1w8a_A 136 NP 137 (192)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=3.8e-10 Score=94.91 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=78.7
Q ss_pred hccCCcccEEEcCCCccccCCcccCCCC-cccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcC
Q 041097 175 CKMFKFLRVLDLGSLVLIRYPSGIENLF-LLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCR 253 (391)
Q Consensus 175 ~~~~~~L~~L~l~~~~l~~~p~~i~~l~-~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~ 253 (391)
+..+..|+.|++++|.+..+|. +..+. +|++|++++|.+..+ +
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-------------------------------~---- 58 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-------------------------------D---- 58 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-------------------------------C----
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-------------------------------c----
Confidence 3456677777777777776543 44444 677777666655432 1
Q ss_pred CCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcccc-CCCcccc
Q 041097 254 LSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTM-GIRAMPK 332 (391)
Q Consensus 254 l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 332 (391)
.++.+ ++|+.|++++|.+...+...++.+++|++|+++.|.......+ ..+.+++
T Consensus 59 -----------------------~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 59 -----------------------GFPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114 (176)
T ss_dssp -----------------------CCCCC-SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred -----------------------ccccC-CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCC
Confidence 22334 5555555555555544333345666666666665544221111 2245667
Q ss_pred cceeeeccccccccchHh----hcCCCCCCEEEeeCCcHH
Q 041097 333 LECLIINPYAHLKRIHEQ----LWCLKSLNKLELWWPEPE 368 (391)
Q Consensus 333 L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l~~~~~~ 368 (391)
|++|++++|. +..+|.. +..+++|++|++++++.+
T Consensus 115 L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 115 LTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777664 5666664 788889999998888754
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=5.5e-10 Score=111.08 Aligned_cols=184 Identities=18% Similarity=0.156 Sum_probs=123.2
Q ss_pred ceEEEEEeccCCCcccccCCCCCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEc
Q 041097 130 NVKRFTAHRKLNDFAFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKL 209 (391)
Q Consensus 130 ~~r~l~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l 209 (391)
+++.|.+..+.... ++....++++.|.+.++... .++ ..++.|++|++++|.+..+|. +++ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~-----~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALI-----SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCS-----CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCc-----ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 56667766332222 33222277888888776553 232 457899999999999998888 766 9999999
Q ss_pred cCCCCCccCCCCc---EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCcc
Q 041097 210 NIPSLKSLPSSRK---ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLT 286 (391)
Q Consensus 210 ~~~~i~~lp~~~~---~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~ 286 (391)
++|.++.+|..+. .|++++|.+. .+|. .+++|++|++++.. +.. +|. ++++|+
T Consensus 128 s~N~l~~lp~~l~~L~~L~Ls~N~l~-------------~lp~---~l~~L~~L~Ls~N~----L~~-lp~---l~~~L~ 183 (571)
T 3cvr_A 128 DNNQLTMLPELPALLEYINADNNQLT-------------MLPE---LPTSLEVLSVRNNQ----LTF-LPE---LPESLE 183 (571)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCS-------------CCCC---CCTTCCEEECCSSC----CSC-CCC---CCTTCC
T ss_pred CCCcCCCCCCcCccccEEeCCCCccC-------------cCCC---cCCCcCEEECCCCC----CCC-cch---hhCCCC
Confidence 9999999987332 8899998888 5665 57788888887722 000 333 226888
Q ss_pred EEEeecccCCCCChhhhcCCCCC-------CEEEcCCCCCcCccccCCCcccccceeeeccccccccchHhhcCC
Q 041097 287 HLSFSNIELMDDPIPALEKLSVL-------QVLKLKQNLYSEERTMGIRAMPKLECLIINPYAHLKRIHEQLWCL 354 (391)
Q Consensus 287 ~L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l 354 (391)
.|+|++|.+...+. +.. +| +.|+++.|.... .+.....+++|+.|++++|+--..+|..+..+
T Consensus 184 ~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 184 ALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEECCSSCCSSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EEECcCCCCCchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 88888888775443 333 56 888888665542 22223568888888888876434567666554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=2.5e-10 Score=93.12 Aligned_cols=112 Identities=19% Similarity=0.133 Sum_probs=86.2
Q ss_pred chhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc-
Q 041097 246 LLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT- 324 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 324 (391)
.+|..++.+++|++|++++.. +.. ++.++.+ ++|+.|++++|.+....+..++.+++|++|+++.|...+...
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~----l~~-~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~ 106 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVG----LTS-IANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSC----CCC-CTTCCCC-TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHH
T ss_pred HHHHHHhhcCCCcEEECcCCC----CCC-chhhhcC-CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHH
Confidence 345566788999999998722 000 2356778 999999999999887666777889999999999777655322
Q ss_pred cCCCcccccceeeeccccccccchH----hhcCCCCCCEEEeeC
Q 041097 325 MGIRAMPKLECLIINPYAHLKRIHE----QLWCLKSLNKLELWW 364 (391)
Q Consensus 325 ~~~~~~~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~ 364 (391)
...+.+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 107 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 34478999999999988 4777775 678999999998864
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=9.5e-10 Score=94.00 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=69.0
Q ss_pred cEEEccCCCCCccCCCCc----EEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccc
Q 041097 205 RYLKLNIPSLKSLPSSRK----ILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIIL-AEY 279 (391)
Q Consensus 205 ~~L~l~~~~i~~lp~~~~----~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~ 279 (391)
++++++++.+..+|..+. .|++++|.+. .+|..+..+++|++|++++.. +..+.| .+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-------------~ip~~~~~l~~L~~L~Ls~N~----i~~i~~~~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-------------LVPKELSNYKHLTLIDLSNNR----ISTLSNQSFS 75 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-------------SCCGGGGGCTTCCEEECCSSC----CCCCCTTTTT
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-------------hhHHHhhcccCCCEEECCCCc----CCEeCHhHcc
Confidence 567788888887776554 6777777666 666666677777777766521 000012 355
Q ss_pred cCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccc
Q 041097 280 QFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPY 341 (391)
Q Consensus 280 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 341 (391)
.+ ++|+.|+|++|.+...+...++.+++|+.|+++.|.......-....+++|+.|+++++
T Consensus 76 ~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 76 NM-TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CC-CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 56 66666666666666555555666666666666644443211111234555566655544
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=2.1e-09 Score=91.81 Aligned_cols=119 Identities=24% Similarity=0.201 Sum_probs=95.2
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc------EEEeeCCccCcceeeEEecccccchh-HHhcCC
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSLASLLLYYQSLLS-KSLCRL 254 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L~~L~l~~~~~lp-~~i~~l 254 (391)
++++++++.+..+|..+. .+|++|+++++.+..+|..+. .|++++|.+. .++ ..+..+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-------------~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-------------TLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-------------CCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-------------EeCHhHccCC
Confidence 578999999998998775 489999999999999986665 8888888777 555 568999
Q ss_pred CCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCc
Q 041097 255 SCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYS 320 (391)
Q Consensus 255 ~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 320 (391)
++|++|++++.. +..+.| .+..+ ++|+.|+|++|.+...+...+..+++|+.|++..|.+.
T Consensus 78 ~~L~~L~Ls~N~----l~~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNR----LRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSC----CCBCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCc----cCEeCHHHhCCC-CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999998722 111133 57788 99999999999988877677889999999999977654
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=4.9e-09 Score=88.05 Aligned_cols=123 Identities=23% Similarity=0.267 Sum_probs=66.6
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++++++.+..+|..+. .+|++|+++++.+..+| +..++.+++|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~-----------------------------~~~~~~l~~L~~L~ 58 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLP-----------------------------HGVFDKLTQLTKLS 58 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCC-----------------------------TTTTTTCTTCSEEE
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeC-----------------------------HHHhcCcccccEEE
Confidence 456666666666665443 35666666666555443 22345666666666
Q ss_pred ecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC-CCcccccceeee
Q 041097 262 LANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG-IRAMPKLECLII 338 (391)
Q Consensus 262 l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 338 (391)
+++.. +.. +| .+..+ ++|+.|++++|.+...+...++.+++|++|+++.|..... +.. ...+++|++|++
T Consensus 59 l~~n~----l~~-~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 59 LSQNQ----IQS-LPDGVFDKL-TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEEC
T ss_pred CCCCc----ceE-eChhHccCC-CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEe
Confidence 66511 000 22 34556 6666666666666655545556666666666665544321 111 134556666666
Q ss_pred cccc
Q 041097 339 NPYA 342 (391)
Q Consensus 339 ~~c~ 342 (391)
++++
T Consensus 132 ~~N~ 135 (177)
T 2o6r_A 132 HTNP 135 (177)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6553
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.98 E-value=3.9e-09 Score=98.87 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=142.6
Q ss_pred cCceEEEEEeccCCCccccc-CC-C-CCccEEEEEecCCcCCCchhhHHhhccCCcccE-EEcCCCccccC-CcccCCCC
Q 041097 128 RENVKRFTAHRKLNDFAFLD-DF-D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRV-LDLGSLVLIRY-PSGIENLF 202 (391)
Q Consensus 128 ~~~~r~l~~~~~~~~~~~~~-~~-~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~l~~~-p~~i~~l~ 202 (391)
+.+++.|.+..+.... +.. .. + ++++.|.+..+... .......|..+..++. +.+.++++..+ |..+..+.
T Consensus 29 ~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~---~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVL---EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTC---CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCC---CccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 4567888887444444 333 33 4 88999988877542 1112245667776664 66777888866 46678999
Q ss_pred cccEEEccCCCCCccCCCCc-------EEEeeC-CccCcc----------eeeEEecc--cccchhHHhcCCCCCCEEEe
Q 041097 203 LLRYLKLNIPSLKSLPSSRK-------ILRLSG-NSQFHF----------SLASLLLY--YQSLLSKSLCRLSCLESLKL 262 (391)
Q Consensus 203 ~L~~L~l~~~~i~~lp~~~~-------~L~l~~-~~l~~L----------~L~~L~l~--~~~~lp~~i~~l~~L~~L~l 262 (391)
+|++|+++++.+..+|.... .|++.+ +.+..+ .++.|+++ ....+|..+....+|++|.+
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 99999999999988876543 677765 345443 58888888 67788888888889999999
Q ss_pred cCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeecc
Q 041097 263 ANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINP 340 (391)
Q Consensus 263 ~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (391)
.+.+. +.. +| .+..+ ++|+.|++++|.+...+.. .+.+|+.|.+. +.......+....+++|+.+++.+
T Consensus 185 ~~~n~---l~~-i~~~~f~~l-~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l-~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNN---LEE-LPNDVFHGA-SGPVILDISRTRIHSLPSY---GLENLKKLRAR-STYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTCTT---CCC-CCTTTTTTE-ECCSEEECTTSCCCCCCSS---SCTTCCEEECT-TCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccCCc---ccC-CCHHHhccC-cccchhhcCCCCcCccChh---hhccchHhhhc-cCCCcCcCCCchhCcChhhCcCCC
Confidence 75210 000 45 45778 9999999999998876643 45667777766 233333455567899999999975
Q ss_pred ccccccchHhhc
Q 041097 341 YAHLKRIHEQLW 352 (391)
Q Consensus 341 c~~l~~lp~~~~ 352 (391)
...-..+..|..
T Consensus 256 ~~~c~~~~~~~~ 267 (350)
T 4ay9_X 256 PSHCCAFANWRR 267 (350)
T ss_dssp HHHHHHHHHSCC
T ss_pred Cccccchhhhhh
Confidence 432223333433
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.97 E-value=5.2e-10 Score=112.13 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=24.5
Q ss_pred hhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEcc
Q 041097 170 YCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLN 210 (391)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~ 210 (391)
.+...+..++.|+.|++++|.+..+|..+.++.+|++|+++
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 34455566677777777776665555555555555555554
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=1.2e-09 Score=108.84 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=102.0
Q ss_pred HHhhccCCcccEEE-cCCCccccCCc------ccCC--CCcccEEEccCCCCCccCCCCc------EEEeeCCccCccee
Q 041097 172 EKICKMFKFLRVLD-LGSLVLIRYPS------GIEN--LFLLRYLKLNIPSLKSLPSSRK------ILRLSGNSQFHFSL 236 (391)
Q Consensus 172 ~~~~~~~~~L~~L~-l~~~~l~~~p~------~i~~--l~~L~~L~l~~~~i~~lp~~~~------~L~l~~~~l~~L~L 236 (391)
+..+..++.|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++ .|++++|.+.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~---- 476 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR---- 476 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC----
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc----
Confidence 34556667777777 44443222221 1111 1247888888888888876 54 7777777777
Q ss_pred eEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhccccccCCCCccEEEeecccCCCCC-hhhhcCCCCCCEEEcC
Q 041097 237 ASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDP-IPALEKLSVLQVLKLK 315 (391)
Q Consensus 237 ~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~ 315 (391)
.+|..++.|++|++|++++.. +.. +|.++.+ ++|+.|+|++|.+.... +..++.+++|+.|+++
T Consensus 477 ---------~lp~~~~~l~~L~~L~Ls~N~----l~~-lp~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 477 ---------ALPPALAALRCLEVLQASDNA----LEN-VDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSC----CCC-CGGGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred ---------ccchhhhcCCCCCEEECCCCC----CCC-CcccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 888899999999999998732 000 5667788 99999999999988875 6889999999999999
Q ss_pred CCCCcCccccCC---Ccccccceeee
Q 041097 316 QNLYSEERTMGI---RAMPKLECLII 338 (391)
Q Consensus 316 ~~~~~~~~~~~~---~~~~~L~~L~l 338 (391)
.|...+...... ..+|+|+.|++
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcCCCCccHHHHHHHHCcccCccCC
Confidence 777655322111 24788888853
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=6.8e-10 Score=113.99 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=61.7
Q ss_pred hhHHhcCCCCCCEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcccc
Q 041097 247 LSKSLCRLSCLESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTM 325 (391)
Q Consensus 247 lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 325 (391)
.|..+..+++|+.|++++.. +.. +| .+..+ ++|+.|+|++|.+...| ..++.|++|++|+|+.|... ..+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~----l~~-l~~~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ----IFN-ISANIFKY-DFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSC----CSC-CCGGGGGC-CSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred ChhhhccCCCCcEEECCCCC----CCC-CChhhcCC-CCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 34556666666666666521 000 34 44556 66667776666666333 55666667777777655544 2222
Q ss_pred CCCcccccceeeeccccccccchHhhcCCCCCCEEEeeCCc
Q 041097 326 GIRAMPKLECLIINPYAHLKRIHEQLWCLKSLNKLELWWPE 366 (391)
Q Consensus 326 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 366 (391)
..+.+++|++|+|++| .++.+|.+++.+++|++|+|++++
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 2356666777777666 456666666666777777666544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=3.1e-09 Score=88.42 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=79.1
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCc
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNS 230 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~ 230 (391)
+.++.|.+.++... ...++..+..++.|++|++++|.+..+ ..++.+.+|++|++++|.+...
T Consensus 24 ~~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG------------- 86 (168)
T ss_dssp TSCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-------------
T ss_pred ccCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-------------
Confidence 56667766554432 112334567889999999999999877 7889999999999999877652
Q ss_pred cCcceeeEEecccccchhHHhcCCCCCCEEEecCCC--CCCchhhhccccccCCCCccEEEeecccCCCCCh---hhhcC
Q 041097 231 QFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANES--KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPI---PALEK 305 (391)
Q Consensus 231 l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~--~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~~~~~---~~l~~ 305 (391)
+|..++.+++|++|++++.. .+|. ++.+..+ ++|+.|++++|.+...+. ..+..
T Consensus 87 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 87 ----------------LDMLAEKLPNLTHLNLSGNKLKDIST----LEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp ----------------CCHHHHHCTTCCEEECBSSSCCSSGG----GGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred ----------------HHHHHhhCCCCCEEeccCCccCcchh----HHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 34445556666666666511 1100 0134455 566666666665554443 34555
Q ss_pred CCCCCEEEcC
Q 041097 306 LSVLQVLKLK 315 (391)
Q Consensus 306 l~~L~~L~l~ 315 (391)
+++|++|+++
T Consensus 146 l~~L~~L~l~ 155 (168)
T 2ell_A 146 LPQLTYLDGY 155 (168)
T ss_dssp CSSCCEETTE
T ss_pred CccCcEecCC
Confidence 5666666555
No 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.88 E-value=1.3e-09 Score=112.69 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=46.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccE-EEEEEcCCCcChHHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDC-HAWVQESLPYDADQILYDIIKF 52 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~-~~~~~vs~~~~~~~i~~~~~~~ 52 (391)
|+||||||+||||||+.+|++.+++..|+. ++|+++++.++...+...+...
T Consensus 153 V~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp EEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999998788999996 9999999999988887776654
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.84 E-value=2.2e-09 Score=107.59 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=76.2
Q ss_pred eeeEEecc--cccchhHHhcCCCCCCEEEecC-CC---------C---CCchhhh---------cc-ccccCCCCccEEE
Q 041097 235 SLASLLLY--YQSLLSKSLCRLSCLESLKLAN-ES---------K---MPRRSNI---------IL-AEYQFPPSLTHLS 289 (391)
Q Consensus 235 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~l~~-~~---------~---lp~L~~L---------lp-~~~~l~~~L~~L~ 289 (391)
+|+.|++. ....+|..++++++|++|.+.. .. . +++|+.+ +| .+..+ ++|+.|+
T Consensus 221 ~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-~~L~~L~ 299 (592)
T 3ogk_B 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA-AQIRKLD 299 (592)
T ss_dssp TCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG-GGCCEEE
T ss_pred CCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc-CCCcEEe
Confidence 45555554 2334666666666677666653 00 0 0111111 45 55667 8889999
Q ss_pred eecccCCCCCh-hhhcCCCCCCEEEcCCCCCcCccccCC-Ccccccceeeecc----------cccccc--chHhhcCCC
Q 041097 290 FSNIELMDDPI-PALEKLSVLQVLKLKQNLYSEERTMGI-RAMPKLECLIINP----------YAHLKR--IHEQLWCLK 355 (391)
Q Consensus 290 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~----------c~~l~~--lp~~~~~l~ 355 (391)
+++|.+..... ..++.+++|+.|++. ++......... ..+++|++|++++ |..+.. ++.....++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 98887544333 346788899999887 44332222211 3578899999995 766653 344446688
Q ss_pred CCCEEEee
Q 041097 356 SLNKLELW 363 (391)
Q Consensus 356 ~L~~L~l~ 363 (391)
+|++|++.
T Consensus 379 ~L~~L~l~ 386 (592)
T 3ogk_B 379 ELEYMAVY 386 (592)
T ss_dssp TCSEEEEE
T ss_pred cCeEEEee
Confidence 99999983
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.83 E-value=9.7e-09 Score=87.54 Aligned_cols=108 Identities=20% Similarity=0.159 Sum_probs=83.2
Q ss_pred cccEEEcCCCccccCCcc--cCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCC
Q 041097 180 FLRVLDLGSLVLIRYPSG--IENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCL 257 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p~~--i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L 257 (391)
.++.|+++++.+..++.. ++.+.+|++|++++|.+..++ |..++.+++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------------~~~~~~l~~L 80 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-----------------------------PNAFEGASHI 80 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-----------------------------TTTTTTCTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-----------------------------HhHcCCcccC
Confidence 789999999999877753 889999999999998887643 4566778888
Q ss_pred CEEEecCCCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcC
Q 041097 258 ESLKLANESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSE 321 (391)
Q Consensus 258 ~~L~l~~~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 321 (391)
++|++++.. +..+.| .+..+ ++|+.|++++|.+...++..++.+++|++|+++.|.+..
T Consensus 81 ~~L~Ls~N~----l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 81 QELQLGENK----IKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSCC----CCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CEEECCCCc----CCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888887722 111123 46778 899999999988877666778888999999998777654
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=3.2e-11 Score=103.60 Aligned_cols=77 Identities=27% Similarity=0.280 Sum_probs=41.4
Q ss_pred CCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccc-cCCCcccccceeeeccccccccc-hH----------h
Q 041097 283 PSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERT-MGIRAMPKLECLIINPYAHLKRI-HE----------Q 350 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l-p~----------~ 350 (391)
++|+.|++++|.+.. ++.++.+++|+.|+++.|....... .....+++|++|++++|. +... |. .
T Consensus 93 ~~L~~L~L~~N~l~~--l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 DTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCSEEEEEEEECCC--HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHH
T ss_pred CcCCEEECcCCcCCc--CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHH
Confidence 556666666665544 3355566666666666444332111 112455666666666553 3222 21 2
Q ss_pred hcCCCCCCEEEe
Q 041097 351 LWCLKSLNKLEL 362 (391)
Q Consensus 351 ~~~l~~L~~L~l 362 (391)
+..+++|++|+-
T Consensus 170 ~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 170 VKRLPNLKKLDG 181 (198)
T ss_dssp HHHCSSCSEECC
T ss_pred HHhCCCcEEECC
Confidence 677888888873
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.80 E-value=3.2e-08 Score=82.97 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=84.3
Q ss_pred CCcccEEEcCCCccccCCc-ccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCC
Q 041097 178 FKFLRVLDLGSLVLIRYPS-GIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSC 256 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p~-~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~ 256 (391)
.+.|+.|+++++.+..+|. .++.+.+|++|+++++.+..+|. ..++.+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~~~l~~ 77 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-----------------------------GVFDKLTK 77 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------------------TTTTTCTT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----------------------------hHccCCCc
Confidence 3689999999999987775 46889999999999998877653 33567888
Q ss_pred CCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcC
Q 041097 257 LESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSE 321 (391)
Q Consensus 257 L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 321 (391)
|++|++++.. +.. +| .+..+ ++|+.|++++|.+...+...+..+++|+.|+++.|.+.+
T Consensus 78 L~~L~l~~N~----l~~-~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 78 LTILYLHENK----LQS-LPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCC----ccc-cCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888887722 011 33 45778 899999999998887776667889999999999776543
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=2.7e-08 Score=83.36 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=71.2
Q ss_pred cEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEE
Q 041097 182 RVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLK 261 (391)
Q Consensus 182 ~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~ 261 (391)
+.++++++.+..+|..+. .+|++|+++++.+..+| |..++.+++|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~-----------------------------~~~~~~l~~L~~L~ 63 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLE-----------------------------PGVFDHLVNLQQLY 63 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCC-----------------------------TTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccC-----------------------------HHHhcCCcCCCEEE
Confidence 567888888877777665 57777777777766543 44567778888888
Q ss_pred ecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCc
Q 041097 262 LANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYS 320 (391)
Q Consensus 262 l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 320 (391)
+++.. +.. +| .+..+ ++|+.|+|++|.+...+...++.+++|+.|+++.|.+.
T Consensus 64 Ls~N~----l~~-i~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 64 FNSNK----LTA-IPTGVFDKL-TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCC----CCc-cChhHhCCc-chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 87622 000 34 34677 88888888888877766556788888888888866544
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=2.7e-08 Score=82.97 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=72.7
Q ss_pred ccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEE
Q 041097 181 LRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESL 260 (391)
Q Consensus 181 L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L 260 (391)
.+.++++++.+..+|..+. .+|++|++++|.++.++ |..++.+++|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~-----------------------------~~~~~~l~~L~~L 59 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLE-----------------------------PGVFDRLTQLTRL 59 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCC-----------------------------TTTTTTCTTCSEE
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccC-----------------------------hhhhcCcccCCEE
Confidence 4677888888887777664 57777777777766553 4456778888888
Q ss_pred EecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCc
Q 041097 261 KLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYS 320 (391)
Q Consensus 261 ~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 320 (391)
++++.. +.. +| .+..+ ++|+.|+|++|.+...+...++.+++|++|+++.|.+.
T Consensus 60 ~Ls~N~----l~~-l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 60 DLDNNQ----LTV-LPAGVFDKL-TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCC----cCc-cChhhccCC-CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 887622 011 33 35677 88888888888887776666788888888888866543
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=4e-09 Score=105.69 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=49.7
Q ss_pred cccCCCCccEEEeecccCCCCCh-hhhcCCCCCCEEEcCCCCCcCccccCC-Ccccccceeeecc--------cccccc-
Q 041097 278 EYQFPPSLTHLSFSNIELMDDPI-PALEKLSVLQVLKLKQNLYSEERTMGI-RAMPKLECLIINP--------YAHLKR- 346 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~--------c~~l~~- 346 (391)
+..+ ++|+.|++++|.+....+ ..+..+++|+.|++..| ......... ..+++|++|++.+ |..+..
T Consensus 285 ~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 285 YSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 3456 888888888887543322 33567888898888844 221111111 2478888888843 334432
Q ss_pred -chHhhcCCCCCCEEEee
Q 041097 347 -IHEQLWCLKSLNKLELW 363 (391)
Q Consensus 347 -lp~~~~~l~~L~~L~l~ 363 (391)
+......+++|++|.+.
T Consensus 363 ~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp HHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhchhHHHHHHh
Confidence 12222347888888664
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=2.4e-10 Score=98.09 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=36.3
Q ss_pred hHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCC
Q 041097 171 CEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPS 219 (391)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~ 219 (391)
++..+..++.|++|++++|.+..+| .++.+.+|++|++++|.+..+|.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~ 87 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN 87 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc
Confidence 3446777888888888888887777 77778888888888877766664
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=1.3e-08 Score=85.32 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=44.1
Q ss_pred CCccEEEEEecCCcCCCchhhHHhhcc-CCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccC
Q 041097 151 SFLHSLLYLTSGSQYLDPTYCEKICKM-FKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLP 218 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp 218 (391)
..++.|.+.++... .+ +.+.. .+.|++|++++|.+..+ ..++.+.+|++|++++|.+..+|
T Consensus 19 ~~L~~L~l~~n~l~-----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-----VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp TSCEEEECTTSCCC-----SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred CCceEEEeeCCCCc-----hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC
Confidence 45666655554432 12 22333 34899999999999877 68899999999999999887765
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.68 E-value=3.8e-08 Score=98.50 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=55.0
Q ss_pred CceEEEEEeccCCCcccccCC--C-CCccEEEEEecCCcCCCchhhHHhhccCCcccEEEcCCCcccc-----CCcccCC
Q 041097 129 ENVKRFTAHRKLNDFAFLDDF--D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLDLGSLVLIR-----YPSGIEN 200 (391)
Q Consensus 129 ~~~r~l~~~~~~~~~~~~~~~--~-~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~p~~i~~ 200 (391)
.+.+.|.+............+ . ++++.|.+.++... ....+......++.|++|++++|.+.. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 356677766322221111112 3 67788877655321 122344555678888888888887552 2233346
Q ss_pred CCcccEEEccCCC--CC--ccC------CCCcEEEeeCC
Q 041097 201 LFLLRYLKLNIPS--LK--SLP------SSRKILRLSGN 229 (391)
Q Consensus 201 l~~L~~L~l~~~~--i~--~lp------~~~~~L~l~~~ 229 (391)
+.+|++|+++++. +. .++ +.+..|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6788888888775 21 111 23347888776
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.55 E-value=2e-07 Score=78.00 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=29.3
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccc
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPY 341 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 341 (391)
.++.+ ++|+.|+|++|.+...+...++.+++|++|+++.|.......-..+.+++|++|+++++
T Consensus 52 ~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 52 VFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred HhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 34445 55555555555555444334455555555555544333211111234445555555444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.51 E-value=2.9e-07 Score=76.64 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=29.7
Q ss_pred ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCcccccceeeeccc
Q 041097 277 AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRAMPKLECLIINPY 341 (391)
Q Consensus 277 ~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 341 (391)
.+..+ ++|++|+|++|.+...+...+..+++|++|+++.|..........+.+++|++|+++++
T Consensus 49 ~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 49 VFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 34445 55555555555555444444455555555555544333211111234445555555443
No 141
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.45 E-value=2.2e-07 Score=93.14 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=55.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccc-cccc-cEEEEEEcCCCcChHHHHHHHHH---hhcC--CCCCCCCCChHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYV-KHYF-DCHAWVQESLPYDADQILYDIIK---FVMP--SPEGFIPDNNEATVEKYL 73 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~l-k~~F-~~~~~~~vs~~~~~~~i~~~~~~---~~~~--~~eg~~~~~~~~~~~~~~ 73 (391)
|+|+||||+||||||+.+|++..+ +.+| +.++|++++.. +...+...+.. .... ...+......+.....+.
T Consensus 150 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 228 (591)
T 1z6t_A 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLR 228 (591)
T ss_dssp EEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHH
Confidence 589999999999999999997666 7889 58999999865 44444444322 2111 000111222455666666
Q ss_pred HHHHc--CccEEeeec
Q 041097 74 EQLIN--GGFVGAGKR 87 (391)
Q Consensus 74 ~~L~~--k~~l~~~~~ 87 (391)
..+.+ +.++.+.++
T Consensus 229 ~~l~~~~~~~LLVLDd 244 (591)
T 1z6t_A 229 ILMLRKHPRSLLILDD 244 (591)
T ss_dssp HHHHHTCTTCEEEEEE
T ss_pred HHHccCCCCeEEEEeC
Confidence 66665 457777665
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.43 E-value=4.1e-07 Score=98.87 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccc-cccc-cEEEEEEcCCCcChHH--HHHHHHHhhcCCC--CCCCCCChHHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYV-KHYF-DCHAWVQESLPYDADQ--ILYDIIKFVMPSP--EGFIPDNNEATVEKYLE 74 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~l-k~~F-~~~~~~~vs~~~~~~~--i~~~~~~~~~~~~--eg~~~~~~~~~~~~~~~ 74 (391)
|+|+||||+||||||+.+|++... +.+| +.+.|+.+++..+... .+..+...+.... ..-.....++....+..
T Consensus 150 v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 229 (1249)
T 3sfz_A 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRV 229 (1249)
T ss_dssp EEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHH
Confidence 689999999999999999997543 5566 5888999998654332 2333333332211 11122235666666666
Q ss_pred HHHcC--ccEEeeec
Q 041097 75 QLING--GFVGAGKR 87 (391)
Q Consensus 75 ~L~~k--~~l~~~~~ 87 (391)
.|..+ +++.+.++
T Consensus 230 ~l~~~~~~~LlvlDd 244 (1249)
T 3sfz_A 230 LMLRKHPRSLLILDD 244 (1249)
T ss_dssp HTSSSSCSCEEEEES
T ss_pred HHhccCCCEEEEEec
Confidence 66665 77777665
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.3e-06 Score=80.78 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=28.1
Q ss_pred CCcccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCCc
Q 041097 178 FKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSRK 222 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~~ 222 (391)
+..|+.+++.+ .+..++ ..|..+.+|+.+.+.++.+..++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF 144 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL 144 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhh
Confidence 67777777766 665444 346677777777777776666555443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=1.1e-06 Score=81.93 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=19.5
Q ss_pred EEcCCC-ccccCCcccCCCCcccEEEccC-CCCCccC
Q 041097 184 LDLGSL-VLIRYPSGIENLFLLRYLKLNI-PSLKSLP 218 (391)
Q Consensus 184 L~l~~~-~l~~~p~~i~~l~~L~~L~l~~-~~i~~lp 218 (391)
++++++ .+..+|. ++.+.+|++|+|++ |.+..+|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~ 48 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLE 48 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEEC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcC
Confidence 355555 5555666 66666666666654 5555544
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=9.8e-07 Score=73.29 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=64.9
Q ss_pred CCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccC-CCc----ccccceeeeccccccccch-HhhcCCCC
Q 041097 283 PSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMG-IRA----MPKLECLIINPYAHLKRIH-EQLWCLKS 356 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~----~~~L~~L~l~~c~~l~~lp-~~~~~l~~ 356 (391)
.+|+.|++++|.++...+..+..+++|+.|+++.|......-+. ... .++|++|+|++|.+++.-- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 48999999999988777788899999999999965543322111 122 3589999999998776422 34678999
Q ss_pred CCEEEeeCCc
Q 041097 357 LNKLELWWPE 366 (391)
Q Consensus 357 L~~L~l~~~~ 366 (391)
|++|++++||
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999998
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.16 E-value=2.7e-06 Score=79.20 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=63.3
Q ss_pred chhHHhcCCCCCCEEEecC-CCCCCchhhhcc-ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCcc
Q 041097 246 LLSKSLCRLSCLESLKLAN-ESKMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEER 323 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~-~~~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 323 (391)
.+|. +..+++|++|++++ .. +..+.| .++.+ ++|+.|+|++|.+...+...++.|++|+.|+|+.|......
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~----l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQH----LQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSS----CCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred ccCC-CCCCCCeeEEEccCCCC----CCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 8888 99999999999974 22 111123 67788 89999999998888777778888999999999877665421
Q ss_pred ccCC-Ccccccceeeecccc
Q 041097 324 TMGI-RAMPKLECLIINPYA 342 (391)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~ 342 (391)
... ..+ .|+.|++.++.
T Consensus 97 -~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 -WKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp -STTTCSC-CCCEEECCSSC
T ss_pred -HHHcccC-CceEEEeeCCC
Confidence 111 223 38888887663
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.09 E-value=1e-06 Score=82.99 Aligned_cols=36 Identities=33% Similarity=0.349 Sum_probs=17.3
Q ss_pred CCccEEEeecccCCCCC----hhhhcCCCCCCEEEcCCCC
Q 041097 283 PSLTHLSFSNIELMDDP----IPALEKLSVLQVLKLKQNL 318 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 318 (391)
++|++|+|++|.+.... ...+...++|+.|+++.|.
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 55555555555543322 1233444555555555443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=1.3e-05 Score=74.95 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=107.8
Q ss_pred cCCC-CCccEEEEEecCCcCCCch----hhHHhhccCCcccEEEcCCCccc----------cCCcccCCCCcccEEEccC
Q 041097 147 DDFD-SFLHSLLYLTSGSQYLDPT----YCEKICKMFKFLRVLDLGSLVLI----------RYPSGIENLFLLRYLKLNI 211 (391)
Q Consensus 147 ~~~~-~~lrsl~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~----------~~p~~i~~l~~L~~L~l~~ 211 (391)
.... ..++.|.+..........+ .+..+..++++|+.|.+.+...+ .+...+..+++|+.|.+++
T Consensus 102 ~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 102 KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp HCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred cCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 3445 6677787654332100111 22334556778888887654322 1222234456666666655
Q ss_pred CCCCccCCCCcEEEeeCCccCcceeeEEecccccchhHHhcCCCCCCEEEecCCCCCCchhhhcccc--ccCCCCccEEE
Q 041097 212 PSLKSLPSSRKILRLSGNSQFHFSLASLLLYYQSLLSKSLCRLSCLESLKLANESKMPRRSNIILAE--YQFPPSLTHLS 289 (391)
Q Consensus 212 ~~i~~lp~~~~~L~l~~~~l~~L~L~~L~l~~~~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp~~--~~l~~~L~~L~ 289 (391)
+.-. .++. + .+++|++|.+.... ++. .. +..+ ..+ ++|+.|+
T Consensus 182 ~~~l------------------------------~l~~-~-~~~~L~~L~L~~~~-l~~-~~-l~~l~~~~l-p~L~~L~ 225 (362)
T 2ra8_A 182 TNNL------------------------------SIGK-K-PRPNLKSLEIISGG-LPD-SV-VEDILGSDL-PNLEKLV 225 (362)
T ss_dssp CBTC------------------------------BCCS-C-BCTTCSEEEEECSB-CCH-HH-HHHHHHSBC-TTCCEEE
T ss_pred CCCc------------------------------eecc-c-cCCCCcEEEEecCC-CCh-HH-HHHHHHccC-CCCcEEE
Confidence 4101 2222 3 37899999997521 000 00 1112 368 9999999
Q ss_pred eecc--cCCCC-Ch----hhh--cCCCCCCEEEcCCCCCcCc---cccCCCcccccceeeecccccccc-----chHhhc
Q 041097 290 FSNI--ELMDD-PI----PAL--EKLSVLQVLKLKQNLYSEE---RTMGIRAMPKLECLIINPYAHLKR-----IHEQLW 352 (391)
Q Consensus 290 l~~~--~~~~~-~~----~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~ 352 (391)
|+.+ ..... .+ +.+ +.+|+|++|++..|..... ...+.+.+|+|++|+|+.| .+.. ++.++.
T Consensus 226 L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD 304 (362)
T ss_dssp EECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH
T ss_pred EeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc
Confidence 9642 11111 11 122 3579999999985544321 1233467899999999866 4554 566667
Q ss_pred CCCCCCEEEeeCCc--HHHHHHhhh
Q 041097 353 CLKSLNKLELWWPE--PELRQQLRE 375 (391)
Q Consensus 353 ~l~~L~~L~l~~~~--~~l~~~~~~ 375 (391)
++++|+.|++++|+ ++..+.+.+
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred cCCcceEEECCCCcCCHHHHHHHHH
Confidence 88999999998775 344444443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.95 E-value=5.7e-06 Score=77.86 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=26.2
Q ss_pred CCcccEEEcCCCcccc-----CCcccC-CCCcccEEEccCCCCC
Q 041097 178 FKFLRVLDLGSLVLIR-----YPSGIE-NLFLLRYLKLNIPSLK 215 (391)
Q Consensus 178 ~~~L~~L~l~~~~l~~-----~p~~i~-~l~~L~~L~l~~~~i~ 215 (391)
++.|+.|++++|.+.. +...+. ...+|++|++++|.+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 4678899999998762 222222 2368888888888765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=3.5e-05 Score=72.08 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=106.9
Q ss_pred CCccEEEEEecCCcCCCc-h----hhHHhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCcEEE
Q 041097 151 SFLHSLLYLTSGSQYLDP-T----YCEKICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRKILR 225 (391)
Q Consensus 151 ~~lrsl~~~~~~~~~~~~-~----~~~~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~~L~ 225 (391)
+++++|.+.+........ | .+...+..++.|+.|.++++.-..++. +. +.+|+.|.+..+.+..
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~--------- 207 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPD--------- 207 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCH---------
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCCh---------
Confidence 789999886543211001 1 255677888999999998874223443 33 6788888877654321
Q ss_pred eeCCccCcceeeEEecccccchhHHhc--CCCCCCEEEecC------CC-CCCchhhhccccccCCCCccEEEeecccCC
Q 041097 226 LSGNSQFHFSLASLLLYYQSLLSKSLC--RLSCLESLKLAN------ES-KMPRRSNIILAEYQFPPSLTHLSFSNIELM 296 (391)
Q Consensus 226 l~~~~l~~L~L~~L~l~~~~~lp~~i~--~l~~L~~L~l~~------~~-~lp~L~~Llp~~~~l~~~L~~L~l~~~~~~ 296 (391)
.....++ .+++|++|+++. .+ .+..+..++ ....+ ++|+.|+|.+|.+.
T Consensus 208 --------------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l-~~~~~-p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 208 --------------------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF-SKDRF-PNLKWLGIVDAEEQ 265 (362)
T ss_dssp --------------------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS-CTTTC-TTCCEEEEESCTTH
T ss_pred --------------------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH-hcCCC-CCcCEEeCCCCCCc
Confidence 2223343 789999999853 11 111111101 12357 89999999998765
Q ss_pred CCChhhh---cCCCCCCEEEcCCCCCcCcc---ccCC-CcccccceeeeccccccccchHhhcCCCC--CCEEEeeCCc
Q 041097 297 DDPIPAL---EKLSVLQVLKLKQNLYSEER---TMGI-RAMPKLECLIINPYAHLKRIHEQLWCLKS--LNKLELWWPE 366 (391)
Q Consensus 297 ~~~~~~l---~~l~~L~~L~l~~~~~~~~~---~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~--L~~L~l~~~~ 366 (391)
......+ ..+++|++|+++.|...... .... ..+++|+.|++++|. +.. .....+.. ...+++++..
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d--~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD--EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH--HHHHHHHHHCCSEEECCSBC
T ss_pred hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCH--HHHHHHHHHcCCEEEecCCc
Confidence 4222222 35799999999966544321 1222 467899999999884 432 22222222 3567776644
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.86 E-value=0.00036 Score=66.18 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=25.6
Q ss_pred cccEEEcCCCccccCC-cccCCCCcccEEEccCCCCCccCCCCc
Q 041097 180 FLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPSLKSLPSSRK 222 (391)
Q Consensus 180 ~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~i~~lp~~~~ 222 (391)
.|+.+.+.. .+..++ ..+..+.+|+.+.+..+++..+|....
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 466666654 444333 456667777777777776766665543
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0001 Score=67.87 Aligned_cols=178 Identities=8% Similarity=-0.003 Sum_probs=107.8
Q ss_pred HhhccCCcccEEEcCCCccccCC-cccCCCCcccEEEccCCC----CCccCCCCc--------EEEeeCC-ccCc-----
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYP-SGIENLFLLRYLKLNIPS----LKSLPSSRK--------ILRLSGN-SQFH----- 233 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p-~~i~~l~~L~~L~l~~~~----i~~lp~~~~--------~L~l~~~-~l~~----- 233 (391)
..|..+..|+.++++++.+..++ ..+..+.++.++...... ...+..... ++++... .+..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 56788999999999999876444 556666677776654421 111111111 1222111 0000
Q ss_pred ----ceeeEEeccc-c--cchhHHhcCCCCCCEEEecCCCCCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhc
Q 041097 234 ----FSLASLLLYY-Q--SLLSKSLCRLSCLESLKLANESKMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALE 304 (391)
Q Consensus 234 ----L~L~~L~l~~-~--~~lp~~i~~l~~L~~L~l~~~~~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~ 304 (391)
-+++.+.+.. . .........+++|+.+++.+.. +.. +| .+..+ ++|+.|.+..+ +...+...+.
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~----i~~-I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN----ATT-IPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC----CCE-ECTTTTTTC-TTCCEEECCTT-CCEECTTTTT
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC----cce-ecHhhhhCC-CCCCEEECCcc-cceehHHHhh
Confidence 0233333330 0 0111111237899999998622 011 44 46678 99999999887 5666667889
Q ss_pred CCCCCC-EEEcCCCCCcCccccCC---CcccccceeeeccccccccchH-hhcCCCCCCEEEe
Q 041097 305 KLSVLQ-VLKLKQNLYSEERTMGI---RAMPKLECLIINPYAHLKRIHE-QLWCLKSLNKLEL 362 (391)
Q Consensus 305 ~l~~L~-~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 362 (391)
.+++|+ .+.+. +... .++. ..+++|+.+++.+. +++.++. .+.++++|++++.
T Consensus 271 ~~~~L~~~l~l~-~~l~---~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELP-ASVT---AIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCEEEEEC-TTCC---EECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred CChhccEEEEEc-ccce---EEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 999999 99998 3221 2333 45678999998755 5788875 6789999999874
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.63 E-value=0.00083 Score=63.66 Aligned_cols=181 Identities=10% Similarity=0.075 Sum_probs=95.8
Q ss_pred HhhccCCcccEEEcCCCccccCCcccCCCCcccEEEccCCCCCccCCCCc-------EEEeeCCccCcc--------eee
Q 041097 173 KICKMFKFLRVLDLGSLVLIRYPSGIENLFLLRYLKLNIPSLKSLPSSRK-------ILRLSGNSQFHF--------SLA 237 (391)
Q Consensus 173 ~~~~~~~~L~~L~l~~~~l~~~p~~i~~l~~L~~L~l~~~~i~~lp~~~~-------~L~l~~~~l~~L--------~L~ 237 (391)
..|..+..|+.+++.++.+..++...-...+|+.+.+..+ ++.++.... .+++..+ +..+ +|+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGIT 251 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCS
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCcc
Confidence 5678899999999999888877765544678888888744 666655443 4444432 2211 455
Q ss_pred EEecc-cccchh-HHhcCCCCCCEEEecCCC-CCCchhhhcc--ccccCCCCccEEEeecccCCCCChhhhcCCCCCCEE
Q 041097 238 SLLLY-YQSLLS-KSLCRLSCLESLKLANES-KMPRRSNIIL--AEYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVL 312 (391)
Q Consensus 238 ~L~l~-~~~~lp-~~i~~l~~L~~L~l~~~~-~lp~L~~Llp--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 312 (391)
.+.+. ....++ ..+.++++|+.+.+.+.. .-..... ++ .+..+ ++|+.+.+.++ +.......+..+++|+.+
T Consensus 252 ~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~-I~~~aF~~c-~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 252 TVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM-IHPYCLEGC-PKLARFEIPES-IRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE-ECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCCSCCEE
T ss_pred EEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccE-ECHHHhhCC-ccCCeEEeCCc-eEEEhhhhhcCCCCccEE
Confidence 55544 333342 345566666666665410 0000000 22 33445 66666666532 333334455666667776
Q ss_pred EcCCCCCcCccccCCCccc--ccceeeeccccccccch-HhhcCCC-CCCEEEee
Q 041097 313 KLKQNLYSEERTMGIRAMP--KLECLIINPYAHLKRIH-EQLWCLK-SLNKLELW 363 (391)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~lp-~~~~~l~-~L~~L~l~ 363 (391)
.+. +... .++.++|. +|+.+.+.++. ...++ ..+..++ +++.|++-
T Consensus 329 ~lp-~~l~---~I~~~aF~~~~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 329 TIP-ANVT---QINFSAFNNTGIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp EEC-TTCC---EECTTSSSSSCCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEC-cccc---EEcHHhCCCCCCCEEEEcCCC-CcccccccccCCCCCccEEEeC
Confidence 665 2211 12222221 67777776552 34443 2334443 56666663
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.16 E-value=0.0001 Score=61.04 Aligned_cols=68 Identities=9% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccCCCCccEEEeeccc-CCCCChhhhcCC----CCCCEEEcCCCCCcCc-cccCCCcccccceeeeccccccccc
Q 041097 279 YQFPPSLTHLSFSNIE-LMDDPIPALEKL----SVLQVLKLKQNLYSEE-RTMGIRAMPKLECLIINPYAHLKRI 347 (391)
Q Consensus 279 ~~l~~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l 347 (391)
..+ ++|+.|+|++|. ++...+..+..+ ++|++|+++.|.-... .......+++|++|++++|++++..
T Consensus 82 ~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 456 777777777774 444445666664 3688888874432222 1222245788888888888777653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00028 Score=59.25 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=32.5
Q ss_pred hhHHhhccCCcccEEEcCCC-ccc-----cCCcccCCCCcccEEEccCCCCC
Q 041097 170 YCEKICKMFKFLRVLDLGSL-VLI-----RYPSGIENLFLLRYLKLNIPSLK 215 (391)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~-~l~-----~~p~~i~~l~~L~~L~l~~~~i~ 215 (391)
.+...+...+.|+.|++++| .+. .+.+.+....+|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34566777888999999888 765 34455566677888887777654
No 156
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.00 E-value=2.8e-05 Score=77.07 Aligned_cols=79 Identities=18% Similarity=0.089 Sum_probs=57.3
Q ss_pred ccccccc-----------EEEEEEcCCCcChHHHHHHHHHhhcCCCC--CCCCCC-----hHHHHHHHHHHHHcCccEEe
Q 041097 23 YVKHYFD-----------CHAWVQESLPYDADQILYDIIKFVMPSPE--GFIPDN-----NEATVEKYLEQLINGGFVGA 84 (391)
Q Consensus 23 ~lk~~F~-----------~~~~~~vs~~~~~~~i~~~~~~~~~~~~e--g~~~~~-----~~~~~~~~~~~L~~k~~l~~ 84 (391)
.++.||. +|+.||.++.++ ...|+++ ||+... .++.++ ++.+|+++++++.
T Consensus 377 ~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----------i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----------VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----------HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred HHHHHHhccchhhhhHhhheeeeCCCCeee----------eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 4577887 999999887766 2246677 776532 466666 9999999999987
Q ss_pred eeccCCCceeeEEcCcchHHHHHhhccccCc
Q 041097 85 GKRSDIGRINTCSIPGRCSPALLTVVFEGEF 115 (391)
Q Consensus 85 ~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~~ 115 (391)
...+ ...+|+|||++|++|..++.++.+
T Consensus 446 ~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 446 GKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7643 445899999999999998876543
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0011 Score=62.10 Aligned_cols=84 Identities=12% Similarity=-0.077 Sum_probs=48.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc--------ccEEEEEEcCCCc-ChHHHHHHHHHhhcCCCCCCCCCChHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY--------FDCHAWVQESLPY-DADQILYDIIKFVMPSPEGFIPDNNEATVEK 71 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~--------F~~~~~~~vs~~~-~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~ 71 (391)
|-|+|++|+||||+|+.+++. +... ...++++..+... +...+...+...+.....+.......+....
T Consensus 48 vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 458999999999999999873 3221 2345566554444 6666666666554322222222223555555
Q ss_pred HHHHHHcCccEEeee
Q 041097 72 YLEQLINGGFVGAGK 86 (391)
Q Consensus 72 ~~~~L~~k~~l~~~~ 86 (391)
+...+..+..+.+.+
T Consensus 126 l~~~l~~~~~vlilD 140 (384)
T 2qby_B 126 IKNGTRNIRAIIYLD 140 (384)
T ss_dssp HHHHHSSSCEEEEEE
T ss_pred HHHHhccCCCEEEEE
Confidence 666665555333333
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.92 E-value=0.002 Score=60.96 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=35.8
Q ss_pred cEEcCCCCcHHHHHHHHhCCcccccc-----cc-EEEEEEcCCCcChHHHHHHHHHhh
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKHY-----FD-CHAWVQESLPYDADQILYDIIKFV 53 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~~-----F~-~~~~~~vs~~~~~~~i~~~~~~~~ 53 (391)
||+|++|+||||||+.+++. +... |. .++|+......+...+...+....
T Consensus 56 ~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 56 GSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 111 (412)
T ss_dssp ECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH
T ss_pred eCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56999999999999999973 3321 23 356666555667777777776655
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.90 E-value=0.00038 Score=58.42 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=79.3
Q ss_pred chhHHhcCCCCCCEEEecCC-C-CCCchhhhcc-ccccCCCCccEEEeecccCCCCC----hhhhcCCCCCCEEEcCCCC
Q 041097 246 LLSKSLCRLSCLESLKLANE-S-KMPRRSNIIL-AEYQFPPSLTHLSFSNIELMDDP----IPALEKLSVLQVLKLKQNL 318 (391)
Q Consensus 246 ~lp~~i~~l~~L~~L~l~~~-~-~lp~L~~Llp-~~~~l~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 318 (391)
.+...+...++|++|++++. . .-..... +. .+... ++|+.|+|++|.+.... ...+...++|++|+++.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~-l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKA-CAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHH-HHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHH-HHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 45567788999999999873 2 0000011 22 44556 89999999999876543 2345566899999999766
Q ss_pred CcCccc---c-CCCcccccceeee--ccccccc-----cchHhhcCCCCCCEEEeeCCcH
Q 041097 319 YSEERT---M-GIRAMPKLECLII--NPYAHLK-----RIHEQLWCLKSLNKLELWWPEP 367 (391)
Q Consensus 319 ~~~~~~---~-~~~~~~~L~~L~l--~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~ 367 (391)
...... . .....++|++|++ ++| .+. .+...+...++|++|+++++.-
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 543221 1 1134568999999 555 343 2556667789999999998874
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.63 E-value=0.002 Score=57.20 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCccEEEeecccCCCCC--hhhhcCCCCCCEEEcCCCCCcCccccCCCccc--ccceeeeccccccccch-------Hhh
Q 041097 283 PSLTHLSFSNIELMDDP--IPALEKLSVLQVLKLKQNLYSEERTMGIRAMP--KLECLIINPYAHLKRIH-------EQL 351 (391)
Q Consensus 283 ~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~lp-------~~~ 351 (391)
++|+.|+|++|.+.... ...++.+++|+.|+|+.|...+...+ +.+. +|++|.+++++--..+| ..+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l--~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL--DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG--GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh--hhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 55555555555554422 13344566666666665554432111 1222 66666666654222232 235
Q ss_pred cCCCCCCEEEeeCCc
Q 041097 352 WCLKSLNKLELWWPE 366 (391)
Q Consensus 352 ~~l~~L~~L~l~~~~ 366 (391)
..+++|+.|+=...+
T Consensus 248 ~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 248 ERFPKLLRLDGHELP 262 (267)
T ss_dssp HHCTTCCEESSCBCC
T ss_pred HHCcccCeECCcCCC
Confidence 677788777654443
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.51 E-value=0.0019 Score=57.35 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=6.4
Q ss_pred CCCcChHHHHHHH
Q 041097 37 SLPYDADQILYDI 49 (391)
Q Consensus 37 s~~~~~~~i~~~~ 49 (391)
.+.++.+.++..+
T Consensus 32 g~ky~k~~ll~~i 44 (267)
T 3rw6_A 32 GRKYDKAWLLSMI 44 (267)
T ss_dssp GGGSCHHHHHHHH
T ss_pred ccccCHHHHHHHH
Confidence 4445555555443
No 162
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0011 Score=54.51 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEA 18 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~v 18 (391)
|+|+|+.|+||||+|+.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999998
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.011 Score=55.16 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=43.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccc------cEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYF------DCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYLE 74 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F------~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~~~~ 74 (391)
|.|+|++|+||||+|+.+++. +...+ -.++++......+...+...+...+.. ..........+....+..
T Consensus 47 vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~ 123 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGV-RVPFTGLSVGEVYERLVK 123 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSC-CCCSSCCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHH
Confidence 458999999999999999873 32211 244556555556666777776665522 111111123444555555
Q ss_pred HHHc
Q 041097 75 QLIN 78 (391)
Q Consensus 75 ~L~~ 78 (391)
.+..
T Consensus 124 ~l~~ 127 (387)
T 2v1u_A 124 RLSR 127 (387)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 5543
No 164
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.29 E-value=0.0011 Score=55.17 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+||||||+.+++
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999987
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0063 Score=56.69 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=32.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccc---cEEEEEEcCCCcChHHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYF---DCHAWVQESLPYDADQILYDIIKF 52 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F---~~~~~~~vs~~~~~~~i~~~~~~~ 52 (391)
|.|+|++|+||||||+.+++ .++..+ ..++++......+...+...+...
T Consensus 48 vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999987 343332 245565544444555555555443
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.21 E-value=0.0015 Score=55.24 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=23.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEE
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQ 35 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~ 35 (391)
|-|+|.+|+||||||+.+++. +......+.++.
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~ 89 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVY 89 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 358999999999999999983 333333444544
No 167
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.11 E-value=0.002 Score=53.00 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 7 i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999876
No 168
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.08 E-value=0.0021 Score=52.64 Aligned_cols=20 Identities=15% Similarity=-0.034 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.05 E-value=0.002 Score=53.86 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 12 i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999986
No 170
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.96 E-value=0.0025 Score=53.89 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 28 i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 171
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.94 E-value=0.0026 Score=52.49 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+.+
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999876
No 172
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.82 E-value=0.0032 Score=52.01 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 57899999999999999875
No 173
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.82 E-value=0.003 Score=53.54 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 68999999999999999865
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.80 E-value=0.0092 Score=55.76 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccc-cEEEEEEcCCCcChHHHHHHHHHhh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYF-DCHAWVQESLPYDADQILYDIIKFV 53 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F-~~~~~~~vs~~~~~~~i~~~~~~~~ 53 (391)
|.|+|..|+||||+|+.+.+. +.... ..++++..+...+...+...+...+
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 468999999999999999873 33221 2455666566666667777666554
No 175
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.0033 Score=52.26 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+|||||++.+..
T Consensus 8 i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999876
No 176
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.77 E-value=0.0036 Score=51.55 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++..+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEECCTTSCHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 58999999999999998665
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.77 E-value=0.0035 Score=52.09 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999876
No 178
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.0035 Score=52.13 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 8 i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999865
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.75 E-value=0.0036 Score=51.59 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 11 i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 180
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.74 E-value=0.0036 Score=53.01 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 21 I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 181
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.71 E-value=0.0037 Score=52.75 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 68999999999999999876
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.67 E-value=0.0024 Score=51.44 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+++
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987
No 183
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.67 E-value=0.004 Score=52.05 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 57999999999999999864
No 184
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.66 E-value=0.0041 Score=50.90 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 10 i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 185
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.65 E-value=0.0041 Score=51.50 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 14 i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 56999999999999999875
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.64 E-value=0.0041 Score=51.83 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+.+
T Consensus 13 I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999875
No 187
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.63 E-value=0.0042 Score=52.56 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 32 i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.62 E-value=0.0042 Score=52.51 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 28 i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.61 E-value=0.0043 Score=51.73 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 6 I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.61 E-value=0.0038 Score=51.71 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|..|+||||+|+.+.+
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999877
No 191
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.60 E-value=0.0042 Score=53.48 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 8 i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 192
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.60 E-value=0.0044 Score=51.52 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999865
No 193
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.60 E-value=0.0044 Score=51.11 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.60 E-value=0.0036 Score=53.36 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|.|||||++.+..
T Consensus 25 v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.59 E-value=0.0044 Score=52.59 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|+.|+||||+++.+..
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999864
No 196
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.0044 Score=52.43 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 9 i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999876
No 197
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.58 E-value=0.0045 Score=52.33 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+|||||++.+..
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 58999999999999999876
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.58 E-value=0.0042 Score=52.78 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||+|+.+..
T Consensus 24 i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 199
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.53 E-value=0.0049 Score=50.30 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.52 E-value=0.0048 Score=52.34 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+++.+..
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 201
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.51 E-value=0.0048 Score=53.35 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=23.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|-|+|..|+||||+|+.+.+. +......+.++..+
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 358999999999999999873 32222334555543
No 202
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.51 E-value=0.0049 Score=51.85 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|+.|+||||+|+.+-.
T Consensus 15 IgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999764
No 203
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.49 E-value=0.0047 Score=51.55 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 204
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.49 E-value=0.0047 Score=52.59 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+|||||++.+..
T Consensus 9 i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 205
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.46 E-value=0.0052 Score=51.06 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 7 I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 206
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.43 E-value=0.0055 Score=50.22 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.41 E-value=0.0056 Score=51.02 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+++.+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 208
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.40 E-value=0.0049 Score=53.12 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+||||+|+.+++
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999986
No 209
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.0057 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999765
No 210
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.37 E-value=0.0058 Score=51.64 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 7 i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999865
No 211
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.35 E-value=0.0056 Score=51.13 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 8 I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 212
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.34 E-value=0.0061 Score=50.89 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+|||||++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999886
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.32 E-value=0.0062 Score=50.87 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.32 E-value=0.0061 Score=53.38 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+|||||++.+..
T Consensus 30 i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999883
No 215
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.28 E-value=0.006 Score=51.23 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 15 I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 216
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.28 E-value=0.0064 Score=51.34 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 23 I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.26 E-value=0.0062 Score=51.56 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+++.+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 218
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.26 E-value=0.015 Score=53.44 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=23.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQES 37 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs 37 (391)
|.|+|++|+|||||++.+.+. ... ...|+...
T Consensus 33 v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~ 64 (357)
T 2fna_A 33 TLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLR 64 (357)
T ss_dssp EEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEch
Confidence 469999999999999999873 322 24566544
No 219
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.25 E-value=0.0065 Score=54.71 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+||||||+.+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999765
No 220
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.25 E-value=0.0063 Score=50.97 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 12 I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999865
No 221
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.013 Score=49.61 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|.+|+||||+|+.+++
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999887
No 222
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.22 E-value=0.0065 Score=51.20 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+|+.+..
T Consensus 11 I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 223
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.21 E-value=0.005 Score=50.84 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=17.5
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 47 ll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEESCGGGCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999876
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.20 E-value=0.007 Score=51.53 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+|||||++.+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57999999999999999876
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.15 E-value=0.0064 Score=55.97 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+.++|..|+||||||+.+.+
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987
No 226
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.13 E-value=0.0074 Score=53.16 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||||+.+..
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 47999999999999999875
No 227
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.12 E-value=0.0075 Score=54.92 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||+|..|+|||||++.+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHh
Confidence 68999999999999999876
No 228
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.11 E-value=0.0078 Score=50.83 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 18 I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.0077 Score=51.08 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.11 E-value=0.0077 Score=53.75 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+++|..|+||||||+.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 47899999999999999987
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.11 E-value=0.0076 Score=53.05 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 30 I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 232
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.11 E-value=0.0075 Score=53.33 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|++|+||||+|+.+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 233
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.10 E-value=0.0055 Score=50.72 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=14.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 8 I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEECCC----CHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999865
No 234
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.10 E-value=0.0079 Score=51.36 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 235
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.08 E-value=0.0076 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.08 E-value=0.007 Score=53.20 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||||+.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987
No 237
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.07 E-value=0.008 Score=51.33 Aligned_cols=20 Identities=10% Similarity=0.131 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999764
No 238
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.07 E-value=0.008 Score=52.60 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+|||||++.+..
T Consensus 28 igI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 239
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.06 E-value=0.008 Score=52.84 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|+.|+||||+|+.+..
T Consensus 25 I~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 240
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.06 E-value=0.0082 Score=51.58 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999875
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.0086 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 4 i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHh
Confidence 58999999999999999876
No 242
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.01 E-value=0.0087 Score=50.12 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+++.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.01 E-value=0.0069 Score=50.64 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+|||||++.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 244
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.95 E-value=0.0093 Score=49.29 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+++.+..
T Consensus 8 i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 245
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.94 E-value=0.0086 Score=47.74 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=18.3
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-|+|..|+|||++|+.+++.
T Consensus 28 ll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999874
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.94 E-value=0.0093 Score=50.69 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999875
No 247
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.94 E-value=0.0093 Score=53.78 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-+||.+|+|||+||+.+.+
T Consensus 40 Ll~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.94 E-value=0.0092 Score=52.42 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 51 i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 249
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.93 E-value=0.0079 Score=55.23 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|++|+|||||++.+.+.
T Consensus 34 v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 34 TLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHH
Confidence 469999999999999999873
No 250
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.91 E-value=0.0086 Score=53.64 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|+|.|+.|+||||+|+.+-
T Consensus 78 I~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999976
No 251
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.01 Score=53.00 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=17.8
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|.+|+||||+|+.+.+
T Consensus 55 ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 55 LLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEESSSSSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4899999999999999987
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.91 E-value=0.009 Score=50.73 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 13 I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.89 E-value=0.0096 Score=50.95 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+++.+..
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999853
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.87 E-value=0.023 Score=48.40 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=29.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILY 47 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~ 47 (391)
++|+|.+|+||||||+.+.. + .=..++|+.....++.+.+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~----~-~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL----L-SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH----H-HCSEEEEEESSCCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH----H-cCCcEEEEECCCCCCHHHHHH
Confidence 47999999999999999875 1 113677777665556665443
No 255
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.87 E-value=0.0092 Score=51.49 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 10 I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.86 E-value=0.0093 Score=50.70 Aligned_cols=20 Identities=5% Similarity=-0.045 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 12 I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 257
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.068 Score=48.54 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=39.7
Q ss_pred EEcCCCCcHHHHHHHHhCCccccc--------cccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHHHHHHHH
Q 041097 3 VLDSIGLDKTAFAAEAYSSNYVKH--------YFDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYLE 74 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~~~~lk~--------~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~~~~ 74 (391)
|+|.+|+|||++|+.|.+. ++. .|.++ ++.-....+...+...++..+.. +........+..+.++.
T Consensus 50 i~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v-~INc~~~~t~~~~~~~I~~~L~g--~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 50 ITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYI-HIDALELAGMDALYEKIWFAISK--ENLCGDISLEALNFYIT 124 (318)
T ss_dssp EECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEE-EEETTCCC--HHHHHHHHHHHSC--CC--CCCCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEE-EEeccccCCHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHH
Confidence 8999999999999999883 321 24333 33322334556677777766532 22222224555666776
Q ss_pred HH
Q 041097 75 QL 76 (391)
Q Consensus 75 ~L 76 (391)
.+
T Consensus 125 ~~ 126 (318)
T 3te6_A 125 NV 126 (318)
T ss_dssp HS
T ss_pred Hh
Confidence 65
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.85 E-value=0.011 Score=48.05 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|.-|.|||||+|.+..
T Consensus 36 v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.84 E-value=0.0089 Score=52.62 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||+|+.+.+
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 35899999999999999987
No 260
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.83 E-value=0.01 Score=50.90 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 7 I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 261
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.81 E-value=0.009 Score=54.58 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=17.9
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|||..|+||||||+.+.+
T Consensus 41 ll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp EEECSSSSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4899999999999999987
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.79 E-value=0.011 Score=52.10 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|.+|+||||+|+.+.+
T Consensus 43 ll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEESCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.78 E-value=0.011 Score=49.89 Aligned_cols=20 Identities=10% Similarity=-0.087 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+++.+.+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 264
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.72 E-value=0.006 Score=51.92 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|..|+||||+|+.+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 265
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.70 E-value=0.011 Score=53.36 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.++|..|+||||||+.+.+
T Consensus 52 vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 35899999999999999997
No 266
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.70 E-value=0.01 Score=53.01 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||||+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 47999999999999999987
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.63 E-value=0.012 Score=51.23 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.5
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
++|+|..|+|||||++.+.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5799999999999999877
No 268
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.63 E-value=0.012 Score=53.26 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||+++.+..
T Consensus 105 i~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999875
No 269
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.60 E-value=0.014 Score=48.39 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+|||||++.+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999876
No 270
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.59 E-value=0.013 Score=48.00 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||+..+..
T Consensus 7 i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 271
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.59 E-value=0.014 Score=47.36 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||.+.+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999998764
No 272
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.58 E-value=0.013 Score=50.35 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 19 i~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999876
No 273
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.57 E-value=0.034 Score=48.11 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=30.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccc----cccEEEEEEcCCCcChHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQESLPYDADQI 45 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~----~F~~~~~~~vs~~~~~~~i 45 (391)
++|+|..|+|||||++.+..+...+. .-..++|+.-...++.+.+
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 47999999999999999875322221 1246777776555565554
No 274
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.55 E-value=0.013 Score=49.44 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 5 i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 275
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.54 E-value=0.013 Score=52.65 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|..|+||||+|+.+.+
T Consensus 57 vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 35899999999999999987
No 276
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.52 E-value=0.013 Score=48.96 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||++.+...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 589999999999999998764
No 277
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.52 E-value=0.014 Score=49.76 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 278
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.51 E-value=0.013 Score=50.03 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.51 E-value=0.014 Score=49.15 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57999999999999999875
No 280
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.48 E-value=0.014 Score=48.93 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||.+.+...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 589999999999999998764
No 281
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.47 E-value=0.014 Score=50.70 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 34 ~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 58999999999999999875
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.46 E-value=0.014 Score=50.45 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 283
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.46 E-value=0.37 Score=45.00 Aligned_cols=79 Identities=23% Similarity=0.191 Sum_probs=51.1
Q ss_pred cccCCCCccEEEeecccCCCCChhhhcCCCCCCEEEcCCCCCcCccccCCCc---ccccceeeeccccccccch-HhhcC
Q 041097 278 EYQFPPSLTHLSFSNIELMDDPIPALEKLSVLQVLKLKQNLYSEERTMGIRA---MPKLECLIINPYAHLKRIH-EQLWC 353 (391)
Q Consensus 278 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~lp-~~~~~ 353 (391)
+... .+|+.+.+..+ +.......+..+.+|+.+.+. +.. ..++.++ +.+|+.+.+... ++.++ ..+..
T Consensus 293 F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp-~~v---~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 293 FYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP-YLV---EEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCC-TTC---CEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred cccc-ccccccccccc-cceechhhhcCCCCCCEEEeC-Ccc---cEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 3445 77888877553 333334566778888888886 222 1233343 457888888643 66775 35788
Q ss_pred CCCCCEEEeeC
Q 041097 354 LKSLNKLELWW 364 (391)
Q Consensus 354 l~~L~~L~l~~ 364 (391)
+++|+.+++.+
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 99999998854
No 284
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.45 E-value=0.014 Score=53.15 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.3
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|+|+|-|||||||.|-.+-
T Consensus 51 IAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 51 FAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHH
Confidence 6899999999999887753
No 285
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.45 E-value=0.014 Score=53.24 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+..
T Consensus 95 igI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999854
No 286
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.41 E-value=0.013 Score=53.13 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+|||||++.+..
T Consensus 83 igI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 287
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.40 E-value=0.014 Score=50.09 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 8 I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 288
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.40 E-value=0.015 Score=50.60 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 289
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.40 E-value=0.015 Score=49.71 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 290
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.39 E-value=0.014 Score=50.07 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=27.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccc---c-cccEEEEEEcCCCcChHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVK---H-YFDCHAWVQESLPYDADQ 44 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk---~-~F~~~~~~~vs~~~~~~~ 44 (391)
++|+|..|+|||||++.+.-..... . .-...+|+.-...++.+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 4799999999999999986421111 1 123566666444444443
No 291
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.38 E-value=0.015 Score=50.01 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 292
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.37 E-value=0.0095 Score=49.07 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 5 v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999865
No 293
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.37 E-value=0.015 Score=50.66 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|+|||||++.+.-
T Consensus 27 ~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999876
No 294
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.35 E-value=0.017 Score=47.80 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||.+.+.++
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999998874
No 295
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.34 E-value=0.017 Score=46.28 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+..+
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.34 E-value=0.014 Score=52.59 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+||||++..+..
T Consensus 108 i~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999764
No 297
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.32 E-value=0.015 Score=49.79 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 8 I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999865
No 298
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.31 E-value=0.018 Score=47.68 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 299
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.31 E-value=0.014 Score=55.96 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+-|||..|+||||||+.+.+
T Consensus 133 lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999988
No 300
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.30 E-value=0.0096 Score=47.34 Aligned_cols=20 Identities=10% Similarity=-0.091 Sum_probs=18.2
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-|+|..|+|||++|+.+++.
T Consensus 31 ll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 31 FLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEETTCCHHHHHGGGCCT
T ss_pred EEECCCCccHHHHHHHHHHh
Confidence 48999999999999999874
No 301
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.29 E-value=0.013 Score=51.74 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++|..|+||||+|+.+.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999987
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.28 E-value=0.011 Score=51.25 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=14.0
Q ss_pred CcEEcCCCCcHHHHHHHHh-C
Q 041097 1 MAVLDSIGLDKTAFAAEAY-S 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy-~ 20 (391)
|||+|..|+|||||++.+. .
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp EEEECSCC----CHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999988 5
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.27 E-value=0.012 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 25 ~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999875
No 304
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.26 E-value=0.016 Score=50.56 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+.+
T Consensus 32 I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.25 E-value=0.017 Score=52.34 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||+++.+..
T Consensus 103 i~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 306
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.23 E-value=0.017 Score=50.33 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 35 ~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999976
No 307
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.21 E-value=0.017 Score=46.22 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998764
No 308
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.20 E-value=0.02 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 579999999999999998764
No 309
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.19 E-value=0.018 Score=51.40 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|+|||||++.+.-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999999999875
No 310
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.19 E-value=0.018 Score=51.03 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 35 ~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999876
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.19 E-value=0.018 Score=49.87 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 37 ~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 312
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.19 E-value=0.017 Score=46.49 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 313
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.15 E-value=0.018 Score=50.76 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 36 ~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999876
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.11 E-value=0.022 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||.+.+.++
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.11 E-value=0.022 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 316
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.10 E-value=0.019 Score=50.19 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999875
No 317
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.08 E-value=0.019 Score=50.80 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 53 ~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCCcHHHHHHHHHc
Confidence 58999999999999999876
No 318
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.07 E-value=0.019 Score=50.36 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 32 ~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.07 E-value=0.02 Score=50.24 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 38 ~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 320
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.06 E-value=0.019 Score=50.87 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|.|||||++.+..
T Consensus 40 ~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 58999999999999999876
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.05 E-value=0.02 Score=50.64 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 49 ~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.04 E-value=0.019 Score=49.66 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+.+
T Consensus 19 I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 323
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.023 Score=45.90 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 324
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.02 E-value=0.02 Score=50.86 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 49 ~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999987
No 325
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.02 E-value=0.02 Score=50.46 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|+|||||++.+.-
T Consensus 44 ~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999986
No 326
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.00 E-value=0.023 Score=46.40 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.98 E-value=0.021 Score=50.14 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 29 ~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 58999999999999999986
No 328
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.97 E-value=0.021 Score=50.72 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 68 Ll~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4899999999999999987
No 329
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.96 E-value=0.024 Score=45.77 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||.+.+.++
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.96 E-value=0.021 Score=50.66 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+.-
T Consensus 36 ~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 58999999999999999876
No 331
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.95 E-value=0.02 Score=49.07 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+..+..
T Consensus 41 i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999775
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.95 E-value=0.022 Score=45.90 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||.+.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 57999999999999999865
No 333
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.94 E-value=0.018 Score=52.30 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|+|..|+||||+|+.+++
T Consensus 41 vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999987
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.94 E-value=0.021 Score=50.77 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 48 ~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999976
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.94 E-value=0.021 Score=50.24 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+.+.|.||+||||++..+..
T Consensus 17 ~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 36899999999999999864
No 336
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.93 E-value=0.021 Score=49.44 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+|+.+..
T Consensus 12 i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 337
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.021 Score=47.48 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 51 i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 338
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.92 E-value=0.021 Score=52.30 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||||+.+..
T Consensus 10 I~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCcCcHHHHHHHHHH
Confidence 68999999999999999876
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.91 E-value=0.023 Score=46.49 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||.+.+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998764
No 340
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.89 E-value=0.02 Score=50.85 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||.+.++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 341
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.86 E-value=0.024 Score=45.76 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||+..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999864
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.86 E-value=0.022 Score=50.86 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 50 ~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 58999999999999999876
No 343
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.85 E-value=0.022 Score=45.96 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.85 E-value=0.017 Score=49.88 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|.-|+||||+++.+..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999876
No 345
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.84 E-value=0.024 Score=46.75 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.83 E-value=0.023 Score=50.00 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.82 E-value=0.019 Score=51.62 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-|.|+.|+||||+|+.+..
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999875
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.81 E-value=0.023 Score=45.81 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 349
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.80 E-value=0.024 Score=46.72 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 9 i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999886
No 350
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.78 E-value=0.021 Score=47.40 Aligned_cols=20 Identities=20% Similarity=-0.037 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||++.+.+
T Consensus 17 i~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999988765
No 351
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.77 E-value=0.027 Score=46.23 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 352
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.76 E-value=0.025 Score=51.67 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|.+|+|||++|+++.+
T Consensus 55 Ll~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 55 LLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp EEECSSSSCHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4799999999999999987
No 353
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.74 E-value=0.024 Score=49.19 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|+.|+||||+++.+..
T Consensus 19 i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999765
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.73 E-value=0.016 Score=50.97 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 35 i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999865
No 355
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.73 E-value=0.021 Score=47.89 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||++.+.++
T Consensus 28 i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998763
No 356
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.73 E-value=0.021 Score=52.16 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+|||+||+++.+
T Consensus 49 LL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp EEESSSSSCHHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHHH
Confidence 4799999999999999987
No 357
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.72 E-value=0.028 Score=46.64 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 579999999999999887654
No 358
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.71 E-value=0.024 Score=52.14 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+++.+..
T Consensus 27 i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57899999999999999886
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.70 E-value=0.029 Score=45.00 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999887654
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.70 E-value=0.026 Score=46.57 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||.+.+.++
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998774
No 361
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.69 E-value=0.025 Score=48.50 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999875
No 362
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.69 E-value=0.025 Score=51.14 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.|||||++.+..
T Consensus 129 vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhh
Confidence 58999999999999999865
No 363
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.67 E-value=0.034 Score=45.28 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998764
No 364
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.66 E-value=0.025 Score=46.23 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999988664
No 365
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.64 E-value=0.028 Score=46.09 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 9 i~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 366
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.63 E-value=0.026 Score=49.90 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 28 v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 57999999999999999865
No 367
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.63 E-value=0.029 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.62 E-value=0.019 Score=48.51 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=17.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+-|+|.+|.||||+|..+.+
T Consensus 61 ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999988876
No 369
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.61 E-value=0.028 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||.+.+.++
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 370
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.60 E-value=0.026 Score=52.32 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||+++.+..
T Consensus 160 i~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999876
No 371
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.56 E-value=0.031 Score=45.48 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 372
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.55 E-value=0.029 Score=46.32 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.++
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 579999999999999998774
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.52 E-value=0.028 Score=46.72 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998775
No 374
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.49 E-value=0.022 Score=51.52 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.|||||++.+.-
T Consensus 83 vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT
T ss_pred EEEECCCCchHHHHHHHHHc
Confidence 58999999999999999865
No 375
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.49 E-value=0.023 Score=51.32 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=17.0
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 71 ll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999998766
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.48 E-value=0.032 Score=46.15 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999876553
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.48 E-value=0.033 Score=45.73 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 579999999999999998764
No 378
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.48 E-value=0.026 Score=52.33 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=17.8
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+||||||+++.+
T Consensus 88 LL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4799999999999999988
No 379
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.48 E-value=0.026 Score=47.23 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||++.+.+
T Consensus 26 i~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999753
No 380
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.47 E-value=0.033 Score=45.73 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999988654
No 381
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.47 E-value=0.03 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 382
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.47 E-value=0.029 Score=45.23 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998753
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.46 E-value=0.028 Score=45.75 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 384
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.43 E-value=0.031 Score=46.32 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998775
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.43 E-value=0.027 Score=47.98 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+|||||+..+..
T Consensus 33 i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999998765
No 386
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.42 E-value=0.029 Score=49.58 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 33 ~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999986
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.42 E-value=0.014 Score=52.52 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|||.|..|+||||+|+.+.+
T Consensus 8 IgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEESCC---CCTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999765
No 388
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.42 E-value=0.028 Score=51.40 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+||||+++.+..
T Consensus 132 i~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999875
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.38 E-value=0.029 Score=50.51 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+|+.+..
T Consensus 5 I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.38 E-value=0.03 Score=46.75 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|.+|+|||||++.+.+
T Consensus 23 i~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999998776
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.37 E-value=0.028 Score=45.33 Aligned_cols=21 Identities=10% Similarity=0.271 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999998754
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.36 E-value=0.034 Score=46.56 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998654
No 393
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.33 E-value=0.029 Score=46.73 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||.+.+.++
T Consensus 26 i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998763
No 394
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.32 E-value=0.029 Score=46.17 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 13 i~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.32 E-value=0.031 Score=45.15 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998654
No 396
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.30 E-value=0.031 Score=46.41 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||+..+.++
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.28 E-value=0.03 Score=53.84 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 296 I~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHH
Confidence 58999999999999999875
No 398
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.28 E-value=0.031 Score=50.60 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.9
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+||||++..+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHH
Confidence 57999999999999999865
No 399
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.28 E-value=0.033 Score=50.99 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=17.6
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 59 ll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHH
Confidence 4899999999999999977
No 400
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.031 Score=51.79 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 121 Ll~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 121 LLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 401
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.27 E-value=0.031 Score=47.47 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 402
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.26 E-value=0.024 Score=61.39 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=61.2
Q ss_pred HhC--CccccccccEEEEEEcCCCcChHHHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHcCccEEeeeccCCCceee
Q 041097 18 AYS--SNYVKHYFDCHAWVQESLPYDADQILYDIIKFVMPSPEGFIPDNNEATVEKYLEQLINGGFVGAGKRSDIGRINT 95 (391)
Q Consensus 18 vy~--~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~L~~k~~l~~~~~~~~~~~~~ 95 (391)
.|+ +++.+.||.+++.|+.+..++.+.++. .|.++ ++.++.++.+|++++++.... .+...+
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~------~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~ 434 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCV------LWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFC 434 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHH------HHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEE
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHH------HhCCC-------HHHHHHHHHHHHhccceEEec---CCCceE
Confidence 355 357789999999999888888877655 34332 577899999999999998654 344457
Q ss_pred EEcCcchHHHHHhhccc
Q 041097 96 CSIPGRCSPALLTVVFE 112 (391)
Q Consensus 96 ~~~hdl~~~~~~~~~~~ 112 (391)
|+||+++|+++...+.+
T Consensus 435 ~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 435 YYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp EECCHHHHHHHHHHTGG
T ss_pred EEecHHHHHHHHhhhhH
Confidence 99999999999887654
No 403
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.25 E-value=0.031 Score=50.31 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+||||+++.+..
T Consensus 101 i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 404
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.25 E-value=0.026 Score=50.99 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 47999999999999999886
No 405
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.24 E-value=0.028 Score=50.94 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=17.8
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-+||..|+|||+||+++++
T Consensus 156 ll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.24 E-value=0.032 Score=45.62 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||.+.+.++
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 407
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.22 E-value=0.028 Score=50.70 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.++|..|+||||+|+.+.+
T Consensus 50 ~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 35899999999999999887
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.22 E-value=0.048 Score=47.11 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+++.+.+
T Consensus 29 i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.21 E-value=0.031 Score=50.28 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=28.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccccc-EEEEEEcCCCcChHHHHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFD-CHAWVQESLPYDADQILYDII 50 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~-~~~~~~vs~~~~~~~i~~~~~ 50 (391)
++|+|..|+|||||++.+... +...-. .+.|+.. +.+.+.+.+++.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~--e~~~~~~~~r~~ 84 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAML--EESVEETAEDLI 84 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEES--SSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeC--cCCHHHHHHHHH
Confidence 479999999999999998763 221112 3555543 334445544443
No 410
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.21 E-value=0.036 Score=46.22 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 32 i~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEESTTSSHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 411
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.20 E-value=0.038 Score=46.10 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 31 i~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 412
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.20 E-value=0.032 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|.+|+|||||+..+.++
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 413
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.20 E-value=0.033 Score=45.56 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+..+
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.19 E-value=0.038 Score=46.02 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 20 i~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998774
No 415
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.19 E-value=0.031 Score=44.85 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+|||||+..+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57999999999999999865
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.18 E-value=0.033 Score=51.97 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|+|||||++.+..
T Consensus 172 i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999886
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.18 E-value=0.039 Score=46.24 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.16 E-value=0.04 Score=45.40 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|..|+|||||...+.++.
T Consensus 21 i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999988653
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.16 E-value=0.027 Score=46.06 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 420
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.031 Score=46.48 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||+..+.++
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999998764
No 421
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.15 E-value=0.036 Score=46.12 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 422
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.14 E-value=0.039 Score=46.70 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.++
T Consensus 10 i~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998764
No 423
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.12 E-value=0.034 Score=50.70 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+||||++..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999998765
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.11 E-value=0.04 Score=45.72 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 19 i~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 425
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.11 E-value=0.03 Score=50.78 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=17.6
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+++
T Consensus 50 ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 50 LFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEESCTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.09 E-value=0.038 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 427
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.08 E-value=0.033 Score=49.61 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999998764
No 428
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.08 E-value=0.031 Score=50.61 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=17.6
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|.+|+||||+|+.+.+
T Consensus 46 ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 46 IISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.08 E-value=0.038 Score=46.19 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 23 i~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 430
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.07 E-value=0.021 Score=48.20 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||.+.+...
T Consensus 29 v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEECTTSSHHHHHTTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999998764
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.07 E-value=0.035 Score=50.48 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||||+.+..
T Consensus 8 i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 432
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.07 E-value=0.038 Score=52.94 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=17.8
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-+||..|+||||+|+.+.+
T Consensus 54 LL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 54 ILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 4899999999999999987
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.04 E-value=0.036 Score=45.77 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 434
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.03 E-value=0.029 Score=46.05 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||...+.++
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999997753
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.03 E-value=0.037 Score=46.44 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 436
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.01 E-value=0.035 Score=49.85 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||++.+..
T Consensus 67 ~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 58999999999999999976
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.99 E-value=0.037 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|+.|+||||+++.+..
T Consensus 6 i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999764
No 438
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.97 E-value=0.035 Score=45.16 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998653
No 439
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.95 E-value=0.043 Score=47.57 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=19.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||...+...
T Consensus 32 i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 689999999999999998874
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.95 E-value=0.039 Score=46.45 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 33 i~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999887754
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.94 E-value=0.038 Score=45.09 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.+.
T Consensus 13 i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 442
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.93 E-value=0.038 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998754
No 443
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.91 E-value=0.044 Score=47.03 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 32 I~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999998774
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.89 E-value=0.045 Score=45.48 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 445
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.89 E-value=0.042 Score=46.04 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 27 i~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 579999999999999998764
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.89 E-value=0.039 Score=45.78 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 447
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.87 E-value=0.039 Score=45.63 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 448
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.84 E-value=0.044 Score=45.26 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||.+.+.++
T Consensus 19 i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998864
No 449
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.83 E-value=0.037 Score=51.30 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|..|+||||+|+.+.+
T Consensus 74 Ll~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 74 LIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987
No 450
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.82 E-value=0.04 Score=46.10 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 31 i~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 451
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.81 E-value=0.04 Score=45.87 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|+|+|..|+|||||+..+..+
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998765
No 452
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.81 E-value=0.11 Score=47.32 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.6
Q ss_pred cEEcCCCCcHHHHHHHHhCCccccc---------cc-----cEEEEEEcCCCcChHHHHHH
Q 041097 2 AVLDSIGLDKTAFAAEAYSSNYVKH---------YF-----DCHAWVQESLPYDADQILYD 48 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~~~lk~---------~F-----~~~~~~~vs~~~~~~~i~~~ 48 (391)
-|+|.+|+||||||..+.-+..+.. .. ..++|+.....|+.+.+.+.
T Consensus 102 ~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 5899999999999998765322221 11 47888888877887776643
No 453
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.81 E-value=0.032 Score=48.46 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=17.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-||+||||+|..+-.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 57899999999999998754
No 454
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.81 E-value=0.035 Score=50.99 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=17.6
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+||||+|+.+.+
T Consensus 62 ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 5899999999999999887
No 455
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.80 E-value=0.041 Score=46.74 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.034 Score=48.30 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|..|+||||+++.+.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 457
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.78 E-value=0.04 Score=49.76 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|-||+||||+|-.+..
T Consensus 44 I~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 57889999999999988654
No 458
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.77 E-value=0.098 Score=48.26 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=28.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccc----cEEEEEEcCCCcChHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYF----DCHAWVQESLPYDADQ 44 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F----~~~~~~~vs~~~~~~~ 44 (391)
++|+|..|+|||||++.+.-....+... ..++|+.-...+..+.
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 4799999999999999987632222222 2557776554454444
No 459
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.74 E-value=0.12 Score=46.83 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=32.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccccccEEEEEEcCCCcChHHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQESLPYDADQILYDIIKF 52 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~F~~~~~~~vs~~~~~~~i~~~~~~~ 52 (391)
+-|.|.+|+||||||..+..+.-.+. ..++||.. +.+.+.+..++...
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~sl--E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSL--EMGKKENIKRLIVT 118 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEES--SSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEEC--CCCHHHHHHHHHHH
Confidence 35899999999999999765322222 46777653 36677777766543
No 460
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.71 E-value=0.11 Score=47.89 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=33.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCCccccc----cccEEEEEEcCCCcChHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQESLPYDADQILY 47 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~----~F~~~~~~~vs~~~~~~~i~~ 47 (391)
+.|+|..|+||||||..+..+..... .=..++||.-...|+.+.+.+
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 35899999999999999875422221 123788888877788777654
No 461
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.048 Score=51.77 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=17.2
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 041097 3 VLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~ 20 (391)
.||++|.|||+||+++.+
T Consensus 220 LyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 699999999999999988
No 462
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.70 E-value=0.039 Score=46.50 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 579999999999999987653
No 463
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.70 E-value=0.1 Score=47.56 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCcccccc----ccEEEEEEcCCCcChHHHHH
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSNYVKHY----FDCHAWVQESLPYDADQILY 47 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~~lk~~----F~~~~~~~vs~~~~~~~i~~ 47 (391)
+.|+|.+|+||||||..+..+...... =..++|+.....|+.+.+.+
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 358999999999999998653222211 13788888877787777654
No 464
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.68 E-value=0.043 Score=45.40 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998653
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.043 Score=45.41 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999998764
No 466
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.66 E-value=0.042 Score=45.16 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=18.9
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||...+.++
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.65 E-value=0.043 Score=49.33 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=17.5
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+||||+|+.+.+
T Consensus 54 ll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4799999999999999987
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.049 Score=51.61 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=17.1
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 041097 3 VLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~ 20 (391)
.||++|+|||+||+++.+
T Consensus 211 L~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EESCTTTTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 699999999999999988
No 469
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.62 E-value=0.043 Score=50.83 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=17.8
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|.+|+|||||+..+..
T Consensus 82 I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998754
No 470
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.051 Score=50.90 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=17.1
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 041097 3 VLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~ 20 (391)
.||++|.|||+||+++.+
T Consensus 187 L~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp EESCSSSSHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 589999999999999988
No 471
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.58 E-value=0.041 Score=51.14 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|.|||||++.+..
T Consensus 173 ~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999764
No 472
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.58 E-value=0.04 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.3
Q ss_pred CcEEcCCCCcHHHHHHHHhCCc
Q 041097 1 MAVLDSIGLDKTAFAAEAYSSN 22 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~~ 22 (391)
|.|+|..|+|||||.+.+.++.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999987653
No 473
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.57 E-value=0.042 Score=48.47 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.1
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|.|-||+||||+|..+..
T Consensus 4 I~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHHHH
Confidence 56789999999999988754
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.042 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||...+.++
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 579999999999999998653
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.54 E-value=0.054 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998765
No 476
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.04 Score=45.71 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 579999999999999998764
No 477
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.52 E-value=0.047 Score=48.10 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=18.1
Q ss_pred cEEcCCCCcHHHHHHHHhCC
Q 041097 2 AVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~~ 21 (391)
-|+|..|+|||++|+.+++.
T Consensus 33 ll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHh
Confidence 48999999999999999873
No 478
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.48 E-value=0.044 Score=46.21 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 479
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.48 E-value=0.047 Score=50.55 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.4
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+||+|..|+|||||++.+.-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCchHHHHHHHHhc
Confidence 58999999999999999875
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.47 E-value=0.056 Score=46.58 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
.||.|+.|+||||+|+.+.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHH
Confidence 48999999999999999865
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.052 Score=45.07 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.8
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||++.+.++
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 482
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.42 E-value=0.051 Score=50.67 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.5
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+||||+|+.+.+
T Consensus 76 ll~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 76 LLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4799999999999999987
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.42 E-value=0.046 Score=50.54 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||.+.+.-
T Consensus 33 ~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHhc
Confidence 47999999999999999865
No 484
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.38 E-value=0.044 Score=50.83 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=17.7
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-++|..|+||||+|+.+.+
T Consensus 55 ll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4799999999999999987
No 485
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.33 E-value=0.057 Score=44.46 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=17.3
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
+|+|..|.|||||+++++-
T Consensus 30 ~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6999999999999999863
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.33 E-value=0.11 Score=44.24 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|.|+.|+||||+++.+.+
T Consensus 9 i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56889999999999999876
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.32 E-value=0.059 Score=45.78 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999998764
No 488
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.32 E-value=0.059 Score=48.84 Aligned_cols=19 Identities=16% Similarity=-0.038 Sum_probs=17.4
Q ss_pred cEEcCCCCcHHHHHHHHhC
Q 041097 2 AVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 2 gI~GmgGvGKTTLa~~vy~ 20 (391)
-|+|++|+||||||.++..
T Consensus 127 LI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEECSCSSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999876
No 489
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.31 E-value=0.058 Score=52.29 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|..|+||||||+.+.+
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 490
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.058 Score=51.25 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=17.2
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 041097 3 VLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 3 I~GmgGvGKTTLa~~vy~ 20 (391)
.||++|.|||+||+++.+
T Consensus 220 L~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 699999999999999988
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.30 E-value=0.05 Score=51.57 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.0
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|.|+|+.|+||||+|+.+..
T Consensus 261 Iil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876
No 492
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.30 E-value=0.052 Score=50.16 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=18.2
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
++|+|..|+|||||.+.+.-
T Consensus 44 ~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 47999999999999999865
No 493
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.29 E-value=0.043 Score=50.55 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=17.5
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
+.|+|..|+||||+|+.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998765
No 494
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.29 E-value=0.054 Score=52.15 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|-++|..|+||||||+.+.+
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999987
No 495
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.28 E-value=0.056 Score=45.26 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.7
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998764
No 496
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.27 E-value=0.05 Score=50.49 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.3
Q ss_pred CcEEcCCCCcHHHHHHHHhC
Q 041097 1 MAVLDSIGLDKTAFAAEAYS 20 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~ 20 (391)
|+|+|..|.|||||++.+..
T Consensus 178 i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999876
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.27 E-value=0.057 Score=45.59 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.5
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||++.+.++
T Consensus 12 i~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998754
No 498
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.25 E-value=0.049 Score=45.77 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=18.6
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|.+|+|||||+..+.++
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998754
No 499
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.24 E-value=0.055 Score=45.09 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=17.3
Q ss_pred CcEEcCCCCcHHHHHHHHh
Q 041097 1 MAVLDSIGLDKTAFAAEAY 19 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy 19 (391)
|.|+|-+|+|||||...+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999999875
No 500
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.22 E-value=0.033 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=8.2
Q ss_pred CcEEcCCCCcHHHHHHHHhCC
Q 041097 1 MAVLDSIGLDKTAFAAEAYSS 21 (391)
Q Consensus 1 igI~GmgGvGKTTLa~~vy~~ 21 (391)
|.|+|..|+|||||+..+.++
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999997654
Done!