Query 041099
Match_columns 361
No_of_seqs 162 out of 230
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 05:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 79.3 1 3.5E-05 32.3 2.2 38 52-89 15-55 (57)
2 1tfi_A Transcriptional elongat 77.3 1.7 5.7E-05 31.3 2.9 38 51-88 8-48 (50)
3 3h0g_I DNA-directed RNA polyme 69.7 4.5 0.00015 32.8 4.0 37 53-89 73-112 (113)
4 2fiy_A Protein FDHE homolog; F 62.6 3.1 0.00011 39.2 2.0 37 51-88 221-264 (309)
5 1twf_I B12.6, DNA-directed RNA 60.3 5.3 0.00018 32.7 2.8 40 52-91 72-114 (122)
6 3dfx_A Trans-acting T-cell-spe 59.1 9 0.00031 29.1 3.6 46 50-99 5-50 (63)
7 1k82_A Formamidopyrimidine-DNA 57.9 3.7 0.00013 37.5 1.6 33 48-85 236-268 (268)
8 1ee8_A MUTM (FPG) protein; bet 57.7 4 0.00014 37.3 1.8 33 48-85 231-263 (266)
9 1gnf_A Transcription factor GA 57.5 7.5 0.00026 27.8 2.8 42 51-96 3-44 (46)
10 3u6p_A Formamidopyrimidine-DNA 56.5 4 0.00014 37.4 1.6 32 49-85 242-273 (273)
11 2xzf_A Formamidopyrimidine-DNA 56.1 4.2 0.00014 37.1 1.6 33 48-85 238-270 (271)
12 3po3_S Transcription elongatio 54.8 5.2 0.00018 34.9 1.9 38 51-88 136-176 (178)
13 1pqv_S STP-alpha, transcriptio 51.8 6.5 0.00022 36.7 2.2 37 52-88 268-307 (309)
14 2kae_A GATA-type transcription 50.8 1.7 5.8E-05 33.7 -1.6 49 48-99 4-52 (71)
15 1k3x_A Endonuclease VIII; hydr 50.7 5.2 0.00018 36.3 1.3 32 49-85 231-262 (262)
16 3nw0_A Non-structural maintena 47.6 2.6 8.9E-05 38.0 -1.2 39 51-90 192-230 (238)
17 4gat_A Nitrogen regulatory pro 45.4 24 0.00081 26.9 4.0 45 50-98 7-51 (66)
18 3qt1_I DNA-directed RNA polyme 41.3 5.6 0.00019 33.5 0.0 38 52-89 92-132 (133)
19 3cw1_L U1 small nuclear ribonu 40.6 6.9 0.00023 30.9 0.4 17 76-92 2-18 (77)
20 2gmg_A Hypothetical protein PF 32.5 25 0.00086 29.2 2.6 15 50-64 82-96 (105)
21 4hc9_A Trans-acting T-cell-spe 32.1 35 0.0012 28.0 3.4 48 48-99 55-102 (115)
22 1pft_A TFIIB, PFTFIIBN; N-term 31.5 25 0.00085 24.1 2.1 33 51-89 4-36 (50)
23 2js4_A UPF0434 protein BB2007; 29.8 41 0.0014 25.6 3.1 37 49-92 5-42 (70)
24 2jny_A Uncharacterized BCR; st 29.2 18 0.00062 27.5 1.1 31 50-87 8-38 (67)
25 3bbn_P Ribosomal protein S16; 29.0 13 0.00046 29.8 0.3 10 325-334 32-41 (88)
26 2vut_I AREA, nitrogen regulato 28.8 24 0.00083 24.8 1.6 40 53-96 2-41 (43)
27 2k2d_A Ring finger and CHY zin 28.2 22 0.00076 27.5 1.5 13 52-64 55-67 (79)
28 3pys_P 30S ribosomal protein S 27.6 14 0.00047 29.4 0.2 10 325-334 32-41 (83)
29 2pk7_A Uncharacterized protein 27.4 24 0.00081 26.9 1.4 31 50-87 6-36 (69)
30 3r8n_P 30S ribosomal protein S 25.8 11 0.00039 29.9 -0.6 10 325-334 32-41 (82)
31 2jr6_A UPF0434 protein NMA0874 25.8 31 0.0011 26.2 1.8 31 50-87 6-36 (68)
32 3ik2_A Endoglucanase A; TIM-li 22.1 33 0.0011 35.0 1.8 32 138-169 7-38 (517)
33 2kdx_A HYPA, hydrogenase/ureas 21.4 51 0.0017 26.3 2.4 15 51-65 88-103 (119)
34 2con_A RUH-035 protein, NIN on 21.4 20 0.00069 28.3 0.0 39 48-101 11-49 (79)
35 2zjr_Z 50S ribosomal protein L 21.3 34 0.0012 25.4 1.3 27 48-86 26-52 (60)
36 4hc9_A Trans-acting T-cell-spe 20.6 75 0.0026 26.0 3.3 42 51-96 4-45 (115)
37 1wd2_A Ariadne-1 protein homol 20.2 62 0.0021 23.6 2.5 42 51-92 5-49 (60)
38 2hf1_A Tetraacyldisaccharide-1 20.2 24 0.00082 26.8 0.2 31 50-87 6-36 (68)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=79.25 E-value=1 Score=32.27 Aligned_cols=38 Identities=18% Similarity=0.589 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCceeeeecccCCCCC---cchhhhhhhcccc
Q 041099 52 PLKCPRCDSSNTKFCYYNNYSLSQP---RHFCKACKRYWTR 89 (361)
Q Consensus 52 ~l~CPRC~S~nTKFcYyNNy~~~QP---RhfCksCrRYWT~ 89 (361)
..+||+|...+..|--.+-.....| .|.|..|.--|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999984444333333333344 3899999999976
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=77.31 E-value=1.7 Score=31.32 Aligned_cols=38 Identities=21% Similarity=0.625 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCCc---chhhhhhhccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYWT 88 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYWT 88 (361)
...+||+|...+..|=-.+-.+...|- |.|..|..-|.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 457899999877766555555554453 89999998885
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.65 E-value=4.5 Score=32.76 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCCCCCCCCceeeeecccCCCCCc---chhhhhhhcccc
Q 041099 53 LKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYWTR 89 (361)
Q Consensus 53 l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYWT~ 89 (361)
.+||+|...+..|-..+-.....|- |.|..|..-|+.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 8999999876544222222222222 889999999974
No 4
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=62.57 E-value=3.1 Score=39.22 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCceeeeecccC-------CCCCcchhhhhhhccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYS-------LSQPRHFCKACKRYWT 88 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~-------~~QPRhfCksCrRYWT 88 (361)
...+||.|... .+.-|+.--. ...--+.|..|+.|+-
T Consensus 221 ~R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 56899999998 4677775433 1222389999999983
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=60.34 E-value=5.3 Score=32.69 Aligned_cols=40 Identities=20% Similarity=0.499 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCceeeeecccCCCCCc---chhhhhhhccccCc
Q 041099 52 PLKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYWTRGG 91 (361)
Q Consensus 52 ~l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYWT~GG 91 (361)
...||+|...+.-|--.+-.+...|- |.|..|.--|....
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 47899999876555444444443343 89999999998753
No 6
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=59.07 E-value=9 Score=29.06 Aligned_cols=46 Identities=17% Similarity=0.494 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccCC
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVG 99 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPVG 99 (361)
.....|-.|....|-. +-.- .....+|-+|.=||-..|..|-+.+-
T Consensus 5 ~~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~~ 50 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTMK 50 (63)
T ss_dssp CTTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGGC
T ss_pred CCCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCcC
Confidence 4567899999887742 1111 12238999999999999998877653
No 7
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=57.92 E-value=3.7 Score=37.47 Aligned_cols=33 Identities=12% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR 85 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR 85 (361)
-..++.+||||...=.|.-+ . .+.-|||..|++
T Consensus 236 ygR~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 236 YGRKGEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TTCTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cccCCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 33567899999987766544 1 355599999985
No 8
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=57.68 E-value=4 Score=37.27 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR 85 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR 85 (361)
-..++.+||||...=.|.-+ -.+.-|||..|++
T Consensus 231 ygR~g~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 231 YGREGLPCPACGRPVERRVV-----AGRGTHFCPTCQG 263 (266)
T ss_dssp TTCTTSBCTTTCCBCEEEES-----SSCEEEECTTTTT
T ss_pred cccCCCCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 33567899999987665433 1355599999997
No 9
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=57.54 E-value=7.5 Score=27.83 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNV 96 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNV 96 (361)
+...|..|...+|-. +-.- .....+|-+|.-||-..|..|-+
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRD--RTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCC--TTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--CccC--CCCCccchHHHHHHHHcCCCCCC
Confidence 567899999887642 1111 22238999999999999998744
No 10
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=56.54 E-value=4 Score=37.40 Aligned_cols=32 Identities=25% Similarity=0.626 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099 49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR 85 (361)
Q Consensus 49 ~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR 85 (361)
..++.+||||...=.|.-+ . .+.-|||..|++
T Consensus 242 gR~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 242 GRQGNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp TCTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCcCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 3567899999987665433 1 355599999985
No 11
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=56.06 E-value=4.2 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR 85 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR 85 (361)
-..++.+||||...=.|.-+ . .+.-|||..|++
T Consensus 238 ygR~G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 238 YGKTGEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TTCTTSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred ccCCCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 33567899999987766543 2 355599999996
No 12
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=54.77 E-value=5.2 Score=34.93 Aligned_cols=38 Identities=21% Similarity=0.612 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCC---cchhhhhhhccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQP---RHFCKACKRYWT 88 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QP---RhfCksCrRYWT 88 (361)
...+||+|...+..|--.+-.+..-| -|.|..|..-|.
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 35789999976544311122221222 388999999995
No 13
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=51.76 E-value=6.5 Score=36.69 Aligned_cols=37 Identities=22% Similarity=0.646 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCceeeeecccCCCCC---cchhhhhhhccc
Q 041099 52 PLKCPRCDSSNTKFCYYNNYSLSQP---RHFCKACKRYWT 88 (361)
Q Consensus 52 ~l~CPRC~S~nTKFcYyNNy~~~QP---RhfCksCrRYWT 88 (361)
...||+|...+..|-=.+...-..| -|.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 5689999955544311122222223 289999999885
No 14
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=50.77 E-value=1.7 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccCC
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVG 99 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPVG 99 (361)
++++...|-.|...+|-. +-.-..... .+|-+|.=||-..|+.|-+..-
T Consensus 4 ~~~~~~~C~nC~tt~Tp~--WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIR--WRNIRSKEG-IQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp ----CCCCSSSCCSCCSS--CCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCCCCCcCCccCCCCCCc--cccCCCCCC-ccchHHHHHHHHhCCCCCcccc
Confidence 456779999999998752 332111222 8999999999999998877654
No 15
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=50.66 E-value=5.2 Score=36.34 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099 49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR 85 (361)
Q Consensus 49 ~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR 85 (361)
...+.+||||...=.|.-+ . .+.-|||..|++
T Consensus 231 gR~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 231 HRDGEPCERCGSIIEKTTL-S----SRPFYWCPGCQH 262 (262)
T ss_dssp TCTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCcCCCCCCCCEeEEEEE-C----CCCeEECCCCCC
Confidence 3567789999987655433 2 345599999985
No 16
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.55 E-value=2.6 Score=38.00 Aligned_cols=39 Identities=21% Similarity=0.540 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccC
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRG 90 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~G 90 (361)
.+..||.|...=+..|+..=. ..+....|..|++.|+..
T Consensus 192 ~g~~C~~C~~~~H~~C~~~~~-~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 192 QGQSCETCGIRMHLPCVAKYF-QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SCEECSSSCCEECHHHHHHHT-TTCSSCBCTTTCCBCCSC
T ss_pred CCcccCccChHHHHHHHHHHH-HhCCCCCCCCCCCCCCCC
Confidence 468899998888888986543 456678899999999875
No 17
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=45.36 E-value=24 Score=26.88 Aligned_cols=45 Identities=20% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccC
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 98 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPV 98 (361)
..+..|-.|...+|-- .-. ...-+ .+|-+|.-||-.-|.+|-+..
T Consensus 7 ~~~~~C~~C~t~~Tp~--WR~-gp~G~-~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPL--WRR-NPEGQ-PLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSCCCTTTCCCCCSS--CEE-ETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCc--CCc-CCCCC-CccHHHHHHHHHcCCCCchhh
Confidence 4678999999988751 111 11222 899999999999999887654
No 18
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=41.31 E-value=5.6 Score=33.54 Aligned_cols=38 Identities=26% Similarity=0.613 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCceeeeecccCCCCC---cchhhhhhhcccc
Q 041099 52 PLKCPRCDSSNTKFCYYNNYSLSQP---RHFCKACKRYWTR 89 (361)
Q Consensus 52 ~l~CPRC~S~nTKFcYyNNy~~~QP---RhfCksCrRYWT~ 89 (361)
..+||+|...+..|=..+-.....| -|.|..|.--|..
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 3799999987654432232222222 2889999999975
No 19
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=40.55 E-value=6.9 Score=30.89 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=15.1
Q ss_pred CcchhhhhhhccccCcc
Q 041099 76 PRHFCKACKRYWTRGGT 92 (361)
Q Consensus 76 PRhfCksCrRYWT~GGt 92 (361)
|||||+-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999988754
No 20
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.53 E-value=25 Score=29.20 Aligned_cols=15 Identities=33% Similarity=0.877 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCce
Q 041099 50 QPPLKCPRCDSSNTK 64 (361)
Q Consensus 50 ~~~l~CPRC~S~nTK 64 (361)
..+-.||+|.|.+..
T Consensus 82 ~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 82 NIPSRCPKCKSEWIE 96 (105)
T ss_dssp SCCSSCSSSCCCCBC
T ss_pred CCCCCCcCCCCCccC
Confidence 466889999998755
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.10 E-value=35 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.472 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccCC
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVG 99 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPVG 99 (361)
....+..|-.|....|-- .-. -+..+.+|-+|.-||...|..|-+.+-
T Consensus 55 ~~~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~~ 102 (115)
T 4hc9_A 55 ARRAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTMK 102 (115)
T ss_dssp CCCTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGGC
T ss_pred cccccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCcccc
Confidence 345679999999988642 111 123368999999999999998887763
No 22
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.53 E-value=25 Score=24.15 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR 89 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~ 89 (361)
..+.||.|...+-.| ...+-...|+.|+.-+..
T Consensus 4 ~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 457899998854333 224556899999776543
No 23
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.81 E-value=41 Score=25.64 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccc-cCcc
Q 041099 49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWT-RGGT 92 (361)
Q Consensus 49 ~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT-~GGt 92 (361)
--+.+.||.|... .-| ........|+.|++-+- +.|.
T Consensus 5 LL~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 5 LLDILVCPVCKGR---LEF----QRAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCCCBCTTTCCB---EEE----ETTTTEEEETTTTEEEEEETTE
T ss_pred HhhheECCCCCCc---CEE----eCCCCEEEcCCCCceecCCCCe
Confidence 3478999999983 333 22356688999987553 3443
No 24
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.24 E-value=18 Score=27.47 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcc
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYW 87 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYW 87 (361)
-+.+.||.|... .-| ........|+.|++-+
T Consensus 8 LeiL~CP~ck~~---L~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 8 LEVLACPKDKGP---LRY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp TCCCBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred HHHhCCCCCCCc---CeE----eCCCCEEEcCCCCccc
Confidence 478999999983 222 2235668899998755
No 25
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.00 E-value=13 Score=29.85 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=9.0
Q ss_pred hhhhcccCCC
Q 041099 325 QMEQIGLADP 334 (361)
Q Consensus 325 q~e~~g~~dp 334 (361)
-||+||+|||
T Consensus 32 ~IE~lG~YnP 41 (88)
T 3bbn_P 32 DLQKVGFYDP 41 (88)
T ss_dssp CSSCCCCBCT
T ss_pred cEeEEEeccC
Confidence 4799999999
No 26
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=28.81 E-value=24 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=28.0
Q ss_pred CCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccc
Q 041099 53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNV 96 (361)
Q Consensus 53 l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNV 96 (361)
..|-.|...+|-. +-.- .....+|-+|.-||-..|..|-+
T Consensus 2 ~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 41 (43)
T 2vut_I 2 TTCTNCFTQTTPL--WRRN--PEGQPLCNACGLFLKLHGVVRPL 41 (43)
T ss_dssp CCCSSSCCCCCSC--CEEC--TTSCEECHHHHHHHHHHSSCCCC
T ss_pred CcCCccCCCCCCc--cccC--CCCCcccHHHHHHHHHhCCCCCC
Confidence 5688888877642 1111 12238999999999999998865
No 27
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.16 E-value=22 Score=27.54 Aligned_cols=13 Identities=46% Similarity=0.853 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCce
Q 041099 52 PLKCPRCDSSNTK 64 (361)
Q Consensus 52 ~l~CPRC~S~nTK 64 (361)
+++||.|.|.||+
T Consensus 55 g~kC~~C~SyNTr 67 (79)
T 2k2d_A 55 GMKCKICESYNTA 67 (79)
T ss_dssp CCCCTTTSCCCEE
T ss_pred cccCcCCCCcCeE
Confidence 3489999999998
No 28
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=27.62 E-value=14 Score=29.42 Aligned_cols=10 Identities=50% Similarity=0.886 Sum_probs=9.0
Q ss_pred hhhhcccCCC
Q 041099 325 QMEQIGLADP 334 (361)
Q Consensus 325 q~e~~g~~dp 334 (361)
-||+||+|||
T Consensus 32 ~IE~lG~YnP 41 (83)
T 3pys_P 32 YIEKIGYYDP 41 (83)
T ss_dssp CSEECCCBCS
T ss_pred ceeeeeEEcC
Confidence 4799999999
No 29
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.43 E-value=24 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcc
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYW 87 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYW 87 (361)
-+.+.||.|... .-| ........|+.|++-+
T Consensus 6 LeiL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 6 LDILACPICKGP---LKL----SADKTELISKGAGLAY 36 (69)
T ss_dssp GGTCCCTTTCCC---CEE----CTTSSEEEETTTTEEE
T ss_pred HhheeCCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 367999999964 222 2335668899998755
No 30
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=25.83 E-value=11 Score=29.86 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=9.0
Q ss_pred hhhhcccCCC
Q 041099 325 QMEQIGLADP 334 (361)
Q Consensus 325 q~e~~g~~dp 334 (361)
-||+||+|||
T Consensus 32 ~IE~lG~YnP 41 (82)
T 3r8n_P 32 FIERVGFFNP 41 (82)
T ss_dssp EEEEEEEECT
T ss_pred ceeeeeEEcC
Confidence 4799999999
No 31
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.78 E-value=31 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcc
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYW 87 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYW 87 (361)
-+.+.||.|... .-| ........|+.|++-+
T Consensus 6 L~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 6 LDILVCPVTKGR---LEY----HQDKQELWSRQAKLAY 36 (68)
T ss_dssp SCCCBCSSSCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hhheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 478999999963 332 2234668899998654
No 32
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}
Probab=22.11 E-value=33 Score=35.01 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=24.9
Q ss_pred ccccCcCCCcCCccccCCCCCCCCCCCcccCC
Q 041099 138 IDISSTSNHINPLFFGLSTNPSDMNLPFSTFN 169 (361)
Q Consensus 138 ~~~~s~s~h~npl~yGl~~~~s~~nlpf~rFN 169 (361)
|+..+--.-|+|.|||+.-...++++|+.|+.
T Consensus 7 vd~~~~r~~isp~iyg~n~~~~~~~~~~~R~G 38 (517)
T 3ik2_A 7 IDTNAEKQAISPYIYGTNQDFSNAKVTARRIG 38 (517)
T ss_dssp EETTSSCEECCGGGSEESSCCSSCCCSEEEEC
T ss_pred EecCCCccccChhhcccccccccCcceEEeec
Confidence 44555556799999999887778899987776
No 33
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.41 E-value=51 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=11.0
Q ss_pred CCC-CCCCCCCCCcee
Q 041099 51 PPL-KCPRCDSSNTKF 65 (361)
Q Consensus 51 ~~l-~CPRC~S~nTKF 65 (361)
... .||.|.+.+.+|
T Consensus 88 ~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 88 LDYGVCEKCHSKNVII 103 (119)
T ss_dssp STTCCCSSSSSCCCEE
T ss_pred CCCCcCccccCCCcEE
Confidence 455 788888887765
No 34
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=21.35 E-value=20 Score=28.27 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccCCCc
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGG 101 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPVGGG 101 (361)
-+.=.+.|-.|-... ...+|+||..|.. .||+.|+|--.
T Consensus 11 ~k~~iLrC~aCf~~t----------~~~~k~FCp~CGn-----~TL~Rvsvsvd 49 (79)
T 2con_A 11 ARSYILRCHGCFKTT----------SDMNRVFCGHCGN-----KTLKKVSVTIN 49 (79)
T ss_dssp CCCEEEECSSSCCEE----------SCSSCCSCSSSCC-----SCCEEEECBCC
T ss_pred eeeeeeEecccceEC----------CCcccccccccCc-----ccceEEEEEEC
Confidence 344678898886553 4578999999964 69999988543
No 35
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.31 E-value=34 Score=25.43 Aligned_cols=27 Identities=30% Similarity=0.813 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhc
Q 041099 48 QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRY 86 (361)
Q Consensus 48 ~~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRY 86 (361)
.......||.|... + .|.+.|..|.-|
T Consensus 26 ~~p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred cCCCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 34567889999875 4 899999999966
No 36
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.62 E-value=75 Score=26.04 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNV 96 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNV 96 (361)
.+..|..|...+|-+=-=. ..-.++|-+|..||-..|..|-+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~----~~g~~lCnaCgl~~Kl~G~nRP~ 45 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRD----GTGHYLCNACGLYHKMNGQNRPL 45 (115)
T ss_dssp --CCCTTTCCSCCSSCEEC----TTSCEECHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCCccCCcceEC----CCCCCcCcchhhhhhhccccccc
Confidence 4688999999888732111 22358999999999988876654
No 37
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.23 E-value=62 Score=23.61 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCceeeeecccCCCC---CcchhhhhhhccccCcc
Q 041099 51 PPLKCPRCDSSNTKFCYYNNYSLSQ---PRHFCKACKRYWTRGGT 92 (361)
Q Consensus 51 ~~l~CPRC~S~nTKFcYyNNy~~~Q---PRhfCksCrRYWT~GGt 92 (361)
...+||.|...-.|----|.-.-.. --+||-.|.+-|...|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 3468888888877754433322222 34788889888876654
No 38
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.16 E-value=24 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcc
Q 041099 50 QPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYW 87 (361)
Q Consensus 50 ~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYW 87 (361)
-+.+.||.|... .-|- .......|+.|++-+
T Consensus 6 L~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 6 LEILVCPLCKGP---LVFD----KSKDELICKGDRLAF 36 (68)
T ss_dssp EEECBCTTTCCB---CEEE----TTTTEEEETTTTEEE
T ss_pred hhheECCCCCCc---CeEe----CCCCEEEcCCCCcEe
Confidence 367899999963 3332 235668899998654
Done!