BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041101
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 274 ERNRRNKLKDGLFALRALVPKIS--KMDRAAILGDAAEYIKELLQEVDKLQ 322
ER RR+ +KD +LR VP + K RA IL A EYI+ + ++V LQ
Sbjct: 12 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQ 62
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 274 ERNRRNKLKDGLFALRALVPKIS--KMDRAAILGDAAEYIK 312
ER RR+ +KD +LR VP + K RA IL A EYI+
Sbjct: 9 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 49
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 274 ERNRRNKLKDGLFALRALVPKIS--KMDRAAILGDAAEYIK 312
ER RR+ +KD +LR VP + K RA IL A EYI+
Sbjct: 20 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 60
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 267 KAKNLITERNRRNKLKDGLFALRALVPKIS--KMDRAAILGDAAEYIK 312
+A + ER RR+ +KD +LR VP + K RA IL A EYI+
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 50
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 274 ERNRRNKLKDGLFALRALVPKIS--KMDRAAILGDAAEYIK 312
ER RR+ +KD +LR VP + K RA IL A EYI+
Sbjct: 11 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 51
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
Length = 88
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 272 ITERNRRNKLKDGLFALRALVPKISKMDRA---AILGDAAEYIKELLQEVDKL 321
+ ER RRN+LK FALR +P++ ++A IL A YI + E KL
Sbjct: 12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL 64
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 127 NSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCL 186
N R + G ++ F KH+SKD + L+L + ++ G++ G DEKCL
Sbjct: 46 NMQRTFQAITGTFLDAFLKKHLSKDFESLVLMLYKPRAQLLCELIR-GATKGAGTDEKCL 104
Query: 187 -DILL 190
D+LL
Sbjct: 105 VDVLL 109
>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
Length = 65
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 267 KAKNLITERNRRNKLKDGLFALRALVPKI------SKMDRAAILGDAAEYIKELLQ 316
+A++ ER RR+K+ + + L ++P S + IL A++YI+EL Q
Sbjct: 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 194 LQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSSRG---SNPSIEHPSFDSNYGYIAQ 250
L P +++ +VP +L A F TH GS G + P I P +G
Sbjct: 278 LGELPDNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFG---- 333
Query: 251 NAPLMQPIGNSFAKRPKAKNLITERNRRNKLKDGLFAL 288
NA ++Q +G A+ L TE + L++ AL
Sbjct: 334 NADMLQGLG-------VARKLATEEATADLLRETALAL 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,995,211
Number of Sequences: 62578
Number of extensions: 453703
Number of successful extensions: 786
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 11
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)