Query 041101
Match_columns 433
No_of_seqs 305 out of 1263
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.2E-15 4.2E-20 123.0 6.5 66 265-330 5-71 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 3E-14 1E-18 115.1 6.5 65 266-330 2-68 (83)
3 1hlo_A Protein (transcription 99.5 2.6E-14 8.8E-19 114.7 6.1 65 265-329 11-77 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.5 6.2E-14 2.1E-18 114.4 6.4 64 266-329 6-72 (88)
5 1an4_A Protein (upstream stimu 99.4 3.2E-14 1.1E-18 109.6 3.1 55 264-318 3-63 (65)
6 4h10_B Circadian locomoter out 99.4 9.3E-14 3.2E-18 108.4 5.4 58 265-322 7-65 (71)
7 4ati_A MITF, microphthalmia-as 99.4 1.8E-13 6.1E-18 117.6 7.1 64 264-327 25-92 (118)
8 1a0a_A BHLH, protein (phosphat 99.4 2.8E-14 9.6E-19 109.3 1.4 54 266-319 2-62 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 3.5E-13 1.2E-17 108.0 7.7 63 267-329 2-67 (80)
10 4h10_A ARYL hydrocarbon recept 99.3 2.8E-13 9.5E-18 106.6 2.4 52 265-316 8-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 1.3E-12 4.4E-17 103.6 3.7 59 265-323 4-66 (76)
12 2ql2_B Neurod1, neurogenic dif 99.0 2.1E-10 7.1E-15 86.8 5.2 54 266-319 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.0 1.8E-10 6E-15 89.3 4.3 55 265-319 11-67 (68)
14 4f3l_A Mclock, circadian locom 98.8 5E-09 1.7E-13 105.5 5.9 54 264-317 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3.1E-08 1.1E-12 100.8 4.4 54 264-317 11-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 3.6E-08 1.2E-12 75.7 2.8 46 271-316 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2E-06 6.9E-11 68.5 6.5 50 278-327 4-57 (83)
18 4aya_A DNA-binding protein inh 97.9 1.3E-05 4.6E-10 65.7 6.0 50 271-320 30-82 (97)
19 1zpv_A ACT domain protein; str 95.7 0.044 1.5E-06 43.1 8.2 48 385-432 4-51 (91)
20 1f5m_A GAF; CGMP binding, sign 95.0 0.0094 3.2E-07 53.8 2.4 70 92-162 93-173 (180)
21 3k2n_A Sigma-54-dependent tran 94.3 0.5 1.7E-05 40.1 11.8 122 5-165 23-163 (177)
22 2ko1_A CTR148A, GTP pyrophosph 94.1 0.14 4.8E-06 39.6 7.0 47 386-432 5-51 (88)
23 3e0y_A Conserved domain protei 93.7 0.083 2.9E-06 44.9 5.5 119 5-165 32-163 (181)
24 3dba_A CONE CGMP-specific 3',5 93.4 0.023 7.9E-07 50.3 1.4 73 92-165 82-170 (180)
25 3rfb_A Putative uncharacterize 93.4 0.051 1.7E-06 49.0 3.6 72 92-164 77-158 (171)
26 3trc_A Phosphoenolpyruvate-pro 93.3 0.22 7.4E-06 41.9 7.5 121 5-165 25-158 (171)
27 1vhm_A Protein YEBR; structura 93.3 0.065 2.2E-06 49.1 4.3 74 92-166 88-171 (195)
28 3oov_A Methyl-accepting chemot 92.5 0.2 6.7E-06 42.1 6.0 121 5-165 19-159 (169)
29 3mmh_A FRMSR, methionine-R-sul 92.0 0.11 3.7E-06 46.3 3.9 71 92-163 77-157 (167)
30 3ci6_A Phosphoenolpyruvate-pro 92.0 0.26 8.9E-06 40.9 6.0 120 5-164 27-159 (171)
31 2vjw_A GAF-B, GAF family prote 91.9 0.098 3.3E-06 45.1 3.4 65 92-162 55-128 (149)
32 2zmf_A CAMP and CAMP-inhibited 91.2 0.16 5.4E-06 43.6 4.0 126 5-165 31-173 (189)
33 3ksh_A Putative uncharacterize 91.2 0.17 5.7E-06 45.0 4.1 70 92-162 76-155 (160)
34 2nyi_A Unknown protein; protei 90.3 0.55 1.9E-05 42.6 6.9 39 385-423 92-130 (195)
35 2e4s_A CAMP and CAMP-inhibited 89.4 0.14 4.9E-06 44.1 2.1 74 92-165 85-173 (189)
36 2w3g_A DOSS, two component sen 88.1 0.47 1.6E-05 38.9 4.4 121 5-165 9-142 (153)
37 2qyb_A Membrane protein, putat 86.5 2 6.8E-05 36.6 7.7 72 95-166 70-156 (181)
38 1u8s_A Glycine cleavage system 86.1 1.5 5.2E-05 39.2 7.0 39 385-423 92-130 (192)
39 3hcy_A Putative two-component 84.3 1.2 4E-05 36.9 4.9 116 5-164 6-135 (151)
40 1ykd_A Adenylate cyclase; GAF 80.6 2 6.7E-05 42.1 5.7 98 6-146 218-331 (398)
41 1mc0_A 3',5'-cyclic nucleotide 78.4 0.68 2.3E-05 44.7 1.5 119 5-165 30-163 (368)
42 1mc0_A 3',5'-cyclic nucleotide 78.0 1.1 3.6E-05 43.3 2.7 74 92-166 245-335 (368)
43 3o1l_A Formyltetrahydrofolate 77.9 5.7 0.00019 38.7 7.9 44 384-427 20-65 (302)
44 3ibj_A CGMP-dependent 3',5'-cy 75.9 1.7 5.6E-05 46.8 3.8 73 92-165 245-334 (691)
45 3ibj_A CGMP-dependent 3',5'-cy 65.2 2.1 7.3E-05 45.9 1.7 116 5-163 31-161 (691)
46 1ykd_A Adenylate cyclase; GAF 58.7 2 6.7E-05 42.1 -0.1 54 92-145 75-143 (398)
47 2f06_A Conserved hypothetical 58.0 33 0.0011 28.6 7.7 44 389-432 75-118 (144)
48 3o5y_A Sensor protein; GAF dom 57.5 13 0.00044 32.2 5.1 73 93-166 55-141 (165)
49 2wt7_A Proto-oncogene protein 57.2 24 0.00081 26.0 5.7 43 274-329 1-43 (63)
50 3bjc_A CGMP-specific 3',5'-cyc 57.0 2.2 7.7E-05 47.3 0.0 74 92-166 225-317 (878)
51 3p01_A Two-component response 57.0 8 0.00027 33.2 3.6 70 96-165 94-176 (184)
52 2fgc_A Acetolactate synthase, 55.2 29 0.001 31.5 7.1 46 387-432 30-77 (193)
53 3bjc_A CGMP-specific 3',5'-cyc 54.2 2.7 9.1E-05 46.7 0.0 74 92-165 407-505 (878)
54 2l5g_A GPS2 protein, G protein 52.4 25 0.00085 23.4 4.4 31 298-328 4-34 (38)
55 2f06_A Conserved hypothetical 41.0 77 0.0026 26.3 7.3 35 388-422 8-42 (144)
56 3he4_B Synzip5; heterodimeric 37.5 46 0.0016 22.3 4.0 25 304-328 5-29 (46)
57 1zme_C Proline utilization tra 36.9 25 0.00085 25.6 3.1 21 309-329 44-64 (70)
58 2er8_A Regulatory protein Leu3 36.8 23 0.00079 26.1 2.9 21 309-329 49-69 (72)
59 2rrl_A FLIK, flagellar HOOK-le 36.1 1.9E+02 0.0067 25.5 9.2 47 375-422 101-153 (169)
60 2oqq_A Transcription factor HY 34.7 30 0.001 23.6 2.8 22 309-330 3-24 (42)
61 2ke4_A CDC42-interacting prote 34.4 78 0.0027 25.5 5.8 63 266-329 6-89 (98)
62 1pd7_B MAD1; PAH2, SIN3, eukar 32.5 51 0.0018 20.1 3.3 19 298-316 2-20 (26)
63 1xkm_B Distinctin chain B; por 32.4 47 0.0016 19.7 3.0 20 301-320 3-22 (26)
64 3cit_A Sensor histidine kinase 32.0 61 0.0021 28.5 5.2 57 94-165 78-144 (160)
65 3fx7_A Putative uncharacterize 29.3 1E+02 0.0035 24.7 5.6 41 277-325 46-86 (94)
66 1dh3_A Transcription factor CR 28.2 47 0.0016 23.8 3.1 21 309-329 22-42 (55)
67 2re1_A Aspartokinase, alpha an 27.5 1.6E+02 0.0055 25.1 7.3 45 384-430 101-148 (167)
68 2dtj_A Aspartokinase; protein- 27.4 1.9E+02 0.0065 25.1 7.8 38 384-421 13-51 (178)
69 1gd2_E Transcription factor PA 24.5 56 0.0019 24.7 3.1 20 308-327 28-47 (70)
70 2akf_A Coronin-1A; coiled coil 23.8 66 0.0023 20.2 2.7 14 311-324 15-28 (32)
71 2jee_A YIIU; FTSZ, septum, coi 23.8 80 0.0027 24.6 3.9 25 304-328 15-39 (81)
72 2re1_A Aspartokinase, alpha an 23.1 1.6E+02 0.0054 25.2 6.3 37 384-420 23-60 (167)
73 2lb5_A Sensor histidine kinase 21.1 1.1E+02 0.0037 26.3 4.9 72 94-165 105-194 (208)
74 2jqq_A Conserved oligomeric go 20.1 47 0.0016 30.2 2.1 45 277-322 52-96 (204)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=1.2e-15 Score=122.99 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=61.5
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPKI-SKMDRAAILGDAAEYIKELLQEVDKLQDELKENED 330 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~-~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~~ 330 (433)
..+..|+.+||+||++||++|..|+++||.. .|+||++||.+||+||++|+.+++.|+.+.+.+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999986 89999999999999999999999999999887654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=3e-14 Score=115.06 Aligned_cols=65 Identities=32% Similarity=0.490 Sum_probs=59.8
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhcCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041101 266 PKAKNLITERNRRNKLKDGLFALRALVPK--ISKMDRAAILGDAAEYIKELLQEVDKLQDELKENED 330 (433)
Q Consensus 266 ~~~~h~~~Er~RR~~~n~~~~~LrslvP~--~~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~~ 330 (433)
.+..|+..||+||.+||+.|..|+++||. ..|++|++||.+||+||+.|++++++|+.+++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999997 589999999999999999999999999988886653
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=2.6e-14 Score=114.67 Aligned_cols=65 Identities=32% Similarity=0.527 Sum_probs=60.8
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPKI--SKMDRAAILGDAAEYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~--~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
..+..|+..||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.+.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999974 6999999999999999999999999999988764
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=6.2e-14 Score=114.40 Aligned_cols=64 Identities=34% Similarity=0.494 Sum_probs=58.3
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhcCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041101 266 PKAKNLITERNRRNKLKDGLFALRALVPKI---SKMDRAAILGDAAEYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 266 ~~~~h~~~Er~RR~~~n~~~~~LrslvP~~---~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
.+..|+..||+||.+||+.|..||++||.. .|++|++||.+||+||+.|+.+.+.|..+++.+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999975 6999999999999999999999999887766543
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=3.2e-14 Score=109.63 Aligned_cols=55 Identities=31% Similarity=0.530 Sum_probs=50.2
Q ss_pred CCccccchHHHHHHHHHHHHhHHHHHhcCCCCC------CCchhhHHHHHHHHHHHHHHHH
Q 041101 264 KRPKAKNLITERNRRNKLKDGLFALRALVPKIS------KMDRAAILGDAAEYIKELLQEV 318 (433)
Q Consensus 264 ~~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~~------k~dkasil~~ai~YI~~Lq~~v 318 (433)
...+..|+.+||+||++||+.|..|++|||... |++|++||.+||+||+.||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999854 7899999999999999999764
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=9.3e-14 Score=108.44 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=53.1
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPK-ISKMDRAAILGDAAEYIKELLQEVDKLQ 322 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~-~~k~dkasil~~ai~YI~~Lq~~v~~L~ 322 (433)
..+.+|+.+||+||++||+.|..|++|||. ..|+||++||..||+||+.||+++.=|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467899999999999999999999999997 4699999999999999999999886553
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.42 E-value=1.8e-13 Score=117.58 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=53.2
Q ss_pred CCccccchHHHHHHHHHHHHhHHHHHhcCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041101 264 KRPKAKNLITERNRRNKLKDGLFALRALVPKI----SKMDRAAILGDAAEYIKELLQEVDKLQDELKE 327 (433)
Q Consensus 264 ~~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~----~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~ 327 (433)
...+..|+.+||+||++||++|..|++|||.. .|++|++||.+||+||+.||++++.|+.+..+
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999975 47889999999999999999999999886443
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.41 E-value=2.8e-14 Score=109.27 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=48.7
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhcCCCC-------CCCchhhHHHHHHHHHHHHHHHHH
Q 041101 266 PKAKNLITERNRRNKLKDGLFALRALVPKI-------SKMDRAAILGDAAEYIKELLQEVD 319 (433)
Q Consensus 266 ~~~~h~~~Er~RR~~~n~~~~~LrslvP~~-------~k~dkasil~~ai~YI~~Lq~~v~ 319 (433)
.+.+|+.+||+||++||..|..|++|||.. .|.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999953 567799999999999999998753
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=3.5e-13 Score=108.01 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhcCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041101 267 KAKNLITERNRRNKLKDGLFALRALVPKI---SKMDRAAILGDAAEYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 267 ~~~h~~~Er~RR~~~n~~~~~LrslvP~~---~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
+..|+..||+||..||..|..|+++||.. .|.+|++||..|++||+.|+++.++|+.+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999964 6888999999999999999999999999887654
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=2.8e-13 Score=106.58 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=48.2
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCCC----CCCchhhHHHHHHHHHHHHHH
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPKI----SKMDRAAILGDAAEYIKELLQ 316 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~----~k~dkasil~~ai~YI~~Lq~ 316 (433)
..+.+|+.+||+||++||+.|..|++|||.. .|+||++||..||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999964 799999999999999999873
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=1.3e-12 Score=103.57 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=48.7
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCC---CCCC-chhhHHHHHHHHHHHHHHHHHHHHH
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPK---ISKM-DRAAILGDAAEYIKELLQEVDKLQD 323 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~---~~k~-dkasil~~ai~YI~~Lq~~v~~L~~ 323 (433)
..+..|+..||+||.+||+.|..||.+||. ..|. .|++||..||+||+.||+++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999995 3455 6888999999999999999987753
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.03 E-value=2.1e-10 Score=86.82 Aligned_cols=54 Identities=31% Similarity=0.357 Sum_probs=48.8
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhcCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 041101 266 PKAKNLITERNRRNKLKDGLFALRALVPKI---SKMDRAAILGDAAEYIKELLQEVD 319 (433)
Q Consensus 266 ~~~~h~~~Er~RR~~~n~~~~~LrslvP~~---~k~dkasil~~ai~YI~~Lq~~v~ 319 (433)
.+..|+..||+|+..||+.|..||.+||.. .|++|+.+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999974 588999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.01 E-value=1.8e-10 Score=89.34 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=50.2
Q ss_pred CccccchHHHHHHHHHHHHhHHHHHhcCCC--CCCCchhhHHHHHHHHHHHHHHHHH
Q 041101 265 RPKAKNLITERNRRNKLKDGLFALRALVPK--ISKMDRAAILGDAAEYIKELLQEVD 319 (433)
Q Consensus 265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~--~~k~dkasil~~ai~YI~~Lq~~v~ 319 (433)
..+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567889999999999999999999999997 4789999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=5e-09 Score=105.45 Aligned_cols=54 Identities=19% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCccccchHHHHHHHHHHHHhHHHHHhcCC-CCCCCchhhHHHHHHHHHHHHHHH
Q 041101 264 KRPKAKNLITERNRRNKLKDGLFALRALVP-KISKMDRAAILGDAAEYIKELLQE 317 (433)
Q Consensus 264 ~~~~~~h~~~Er~RR~~~n~~~~~LrslvP-~~~k~dkasil~~ai~YI~~Lq~~ 317 (433)
+..+.+|+.+||+||++||..|..|++||| ...|+||++||..||+||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999 578999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.56 E-value=3.1e-08 Score=100.77 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=49.9
Q ss_pred CCccccchHHHHHHHHHHHHhHHHHHhcCC----CCCCCchhhHHHHHHHHHHHHHHH
Q 041101 264 KRPKAKNLITERNRRNKLKDGLFALRALVP----KISKMDRAAILGDAAEYIKELLQE 317 (433)
Q Consensus 264 ~~~~~~h~~~Er~RR~~~n~~~~~LrslvP----~~~k~dkasil~~ai~YI~~Lq~~ 317 (433)
+..+.+|+.+||+||++||..|..|++||| ...|+||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999999 579999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.52 E-value=3.6e-08 Score=75.68 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhHHHHHhcCCCC---CCCchhhHHHHHHHHHHHHHH
Q 041101 271 LITERNRRNKLKDGLFALRALVPKI---SKMDRAAILGDAAEYIKELLQ 316 (433)
Q Consensus 271 ~~~Er~RR~~~n~~~~~LrslvP~~---~k~dkasil~~ai~YI~~Lq~ 316 (433)
+..||+|+..||+-|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999974 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.23 E-value=2e-06 Score=68.53 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=44.1
Q ss_pred HHHHHHhHHHHHhcCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041101 278 RNKLKDGLFALRALVPKI----SKMDRAAILGDAAEYIKELLQEVDKLQDELKE 327 (433)
Q Consensus 278 R~~~n~~~~~LrslvP~~----~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~ 327 (433)
|..||+++..|..|||.. .|..|.+||..|++||+.||+.++.+.++..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999963 57899999999999999999988888765543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.92 E-value=1.3e-05 Score=65.68 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhHHHHHhcCCC---CCCCchhhHHHHHHHHHHHHHHHHHH
Q 041101 271 LITERNRRNKLKDGLFALRALVPK---ISKMDRAAILGDAAEYIKELLQEVDK 320 (433)
Q Consensus 271 ~~~Er~RR~~~n~~~~~LrslvP~---~~k~dkasil~~ai~YI~~Lq~~v~~ 320 (433)
...||.|-..||+-|..||.+||. ..|..|.-+|.-||+||..|++-++.
T Consensus 30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 30 VDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345688999999999999999996 46889999999999999999987743
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.65 E-value=0.044 Score=43.10 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=41.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEeeCCEEEEEEEe
Q 041101 385 RDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRV 432 (433)
Q Consensus 385 ~~~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~~~~vl~~f~v 432 (433)
..+.|.|.|+++||++.+|..+|.+.|..|.+.+..+.++...-.+.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v 51 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV 51 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE
Confidence 457899999999999999999999999999999998887766655554
No 20
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.00 E-value=0.0094 Score=53.81 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=53.2
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcccc--cccCCceEEEEeeCC------ceEeeccccc---cccChHHHHHHHH
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIA--SHQSNSTRVLIPVFG------GLIELFAAKH---ISKDQNIIELVLA 160 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~--~~~gIqTiv~IPv~~------GVveLGS~~~---i~Ed~~~v~~vk~ 160 (433)
.|++|+|+.|+|+.+|+++.|.+.... +.+ ...+++.++|||+.. |||++.+.+. -.+|..+++.+-.
T Consensus 93 ~i~~g~Gi~G~aa~~g~~v~v~Dv~~d-p~~~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la~ 171 (180)
T 1f5m_A 93 MIQFGKGVCGTAASTKETQIVPDVNKY-PGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAK 171 (180)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGS-TTCCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred eecCCCcchhhhhhcCCEEEeCCcccC-ccccccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHHH
Confidence 478999999999999999999876421 112 235788999999965 9999998754 3457777777766
Q ss_pred hc
Q 041101 161 HC 162 (433)
Q Consensus 161 ~f 162 (433)
..
T Consensus 172 ~~ 173 (180)
T 1f5m_A 172 LI 173 (180)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 21
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=94.31 E-value=0.5 Score=40.13 Aligned_cols=122 Identities=10% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.+++.-+.+++.+|-+.++...+..|..++..+... . .
T Consensus 23 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~--------------~----------~---------- 68 (177)
T 3k2n_A 23 ELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPE--------------Q----------L---------- 68 (177)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCS--------------T----------T----------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCc--------------h----------h----------
Confidence 45778888888889999999999988744454553211111000 0 0
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCc-----c------cccccCCceEEEEeeC-----CceEeecccccc
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSD-----S------IASHQSNSTRVLIPVF-----GGLIELFAAKHI 148 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~-----~------~~~~~gIqTiv~IPv~-----~GVveLGS~~~i 148 (433)
....+++++|+.|+++.++++..+ +....+ . .....|++.+++||+. -|||.+++.+.-
T Consensus 69 ----~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~ 143 (177)
T 3k2n_A 69 ----RHQTRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEK 143 (177)
T ss_dssp ----CCSEEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred ----hcccCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCC
Confidence 012366899999999999999988 443211 1 1234689999999983 299999886542
Q ss_pred ---ccChHHHHHHHHhcccc
Q 041101 149 ---SKDQNIIELVLAHCNTS 165 (433)
Q Consensus 149 ---~Ed~~~v~~vk~~f~~~ 165 (433)
.+|..+++.+-..++..
T Consensus 144 ~f~~~d~~ll~~lA~~~a~A 163 (177)
T 3k2n_A 144 LWSDGDKSLLSGVSSSIAIA 163 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35777777776666543
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.08 E-value=0.14 Score=39.61 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=39.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEeeCCEEEEEEEe
Q 041101 386 DFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRV 432 (433)
Q Consensus 386 ~~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~~~~vl~~f~v 432 (433)
.+.|+|.+.+++|.|.+|..+|.+.|+.|.++++...++....+|.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 46788999999999999999999999999999998876644444443
No 23
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=93.69 E-value=0.083 Score=44.94 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=77.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.++..-+++++.+|.+.++.. .+.-.. |... + ...
T Consensus 32 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~~~----g~~~----------------------~-~~~--------- 74 (181)
T 3e0y_A 32 EVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAATH----GFDP----------------------A-FIG--------- 74 (181)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEEEE----SSCG----------------------G-GTT---------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEEec----CCCH----------------------H-Hhc---------
Confidence 45777777788888999999999987732 221111 1100 0 000
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCcc-----cccccCCceEEEEeeC-----CceEeecccccc---ccC
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS-----IASHQSNSTRVLIPVF-----GGLIELFAAKHI---SKD 151 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~-----~~~~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed 151 (433)
...+++|+|+.|+++.+|++.++.+...... .....|++.++|||+. -|||.+++.+.- .+|
T Consensus 75 -----~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~ 149 (181)
T 3e0y_A 75 -----KIRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDE 149 (181)
T ss_dssp -----TCEEETTTSSHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHH
T ss_pred -----cccccCCCCeeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHH
Confidence 1246789999999999999999976542111 1123588999999983 289999988632 457
Q ss_pred hHHHHHHHHhcccc
Q 041101 152 QNIIELVLAHCNTS 165 (433)
Q Consensus 152 ~~~v~~vk~~f~~~ 165 (433)
..+++.+-..++..
T Consensus 150 ~~~l~~la~~~a~a 163 (181)
T 3e0y_A 150 IYFVSIIANLILTA 163 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 24
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=93.41 E-value=0.023 Score=50.32 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=54.6
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc-------ccCCceEEEEeeC--C---ceEeecccccc----ccChHHH
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS-------HQSNSTRVLIPVF--G---GLIELFAAKHI----SKDQNII 155 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~-------~~gIqTiv~IPv~--~---GVveLGS~~~i----~Ed~~~v 155 (433)
.+++|+|+.|+|+.+|+++.|.+... +..|. ...++.++|||+. + |||+|.+...- .+|..++
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~-d~~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~lL 160 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKK-NNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVF 160 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGG-CTTCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCC-CcccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHHH
Confidence 47789999999999999999986542 11121 1246899999983 2 99999876532 4688888
Q ss_pred HHHHHhcccc
Q 041101 156 ELVLAHCNTS 165 (433)
Q Consensus 156 ~~vk~~f~~~ 165 (433)
+.+-.+++..
T Consensus 161 ~~lA~~aa~~ 170 (180)
T 3dba_A 161 KKYLNFISLV 170 (180)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 25
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=93.35 E-value=0.051 Score=48.99 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=54.6
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc--ccCCceEEEEeeC--C---ceEeecccccc---ccChHHHHHHHHh
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS--HQSNSTRVLIPVF--G---GLIELFAAKHI---SKDQNIIELVLAH 161 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~--~~gIqTiv~IPv~--~---GVveLGS~~~i---~Ed~~~v~~vk~~ 161 (433)
.+++|+|+.|+|+.+|+++-|.+.+... .+. ..+.+..+|||+. + |||.+.|.+.- .+|..+++.+-..
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p-~~i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYL-NYISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCS-SCCCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCc-cccccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999998776322 232 2457899999983 2 99999985432 5688888888777
Q ss_pred ccc
Q 041101 162 CNT 164 (433)
Q Consensus 162 f~~ 164 (433)
+..
T Consensus 156 la~ 158 (171)
T 3rfb_A 156 LLE 158 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 26
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=93.34 E-value=0.22 Score=41.92 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=79.3
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.++..++.++..-+++++.+|.+.++ ...|...- +.|... . .. .
T Consensus 25 ~~l~~~~~~~~~~~~~~~~~i~l~d~~-~~~l~~~~--~~g~~~--------------~---------~~-~-------- 69 (171)
T 3trc_A 25 QALKLVVVRLCEALPADACSLFICDDV-HGEYVLMA--TQGLNS--------------K---------QV-G-------- 69 (171)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEETT-TTEEEEEE--EESSCG--------------G---------GT-T--------
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEECC-CCeEEEEE--ecCCCc--------------c---------cc-c--------
Confidence 457777888888889999999999887 32332221 111110 0 00 0
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCc-----ccccccCCceEEEEeeC-----CceEeecccccc---ccC
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSD-----SIASHQSNSTRVLIPVF-----GGLIELFAAKHI---SKD 151 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~-----~~~~~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed 151 (433)
...+++++|+.|+++.++++.++.+..... ......+++.+++||+. -|||.+++.+.- .+|
T Consensus 70 -----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d 144 (171)
T 3trc_A 70 -----KLRLKFGEGLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEE 144 (171)
T ss_dssp -----TCEEETTCHHHHHHHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHH
T ss_pred -----cEeecCCCChhhHHHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHH
Confidence 014678999999999999999997543211 11123689999999983 399999987542 457
Q ss_pred hHHHHHHHHhcccc
Q 041101 152 QNIIELVLAHCNTS 165 (433)
Q Consensus 152 ~~~v~~vk~~f~~~ 165 (433)
..+++.+-..++..
T Consensus 145 ~~~l~~la~~~a~a 158 (171)
T 3trc_A 145 EAFCVTLAIHLAAE 158 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666543
No 27
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.32 E-value=0.065 Score=49.14 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=56.7
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcccc--cccCCceEEEEeeC-C----ceEeeccccc---cccChHHHHHHHHh
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIA--SHQSNSTRVLIPVF-G----GLIELFAAKH---ISKDQNIIELVLAH 161 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~--~~~gIqTiv~IPv~-~----GVveLGS~~~---i~Ed~~~v~~vk~~ 161 (433)
.|++|+|+.|+|+.+|+++.|.+.... +.+ ...+.+..+|||+. + |||++.+.+. -.+|..+++.+-..
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~-p~~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ 166 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVF-DGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 166 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTC-TTCCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EecCCCChHHHHHhcCCEEEECCcccC-cchhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999876532 222 23567899999983 2 9999998764 34588888888877
Q ss_pred ccccc
Q 041101 162 CNTSI 166 (433)
Q Consensus 162 f~~~~ 166 (433)
.+..+
T Consensus 167 ia~al 171 (195)
T 1vhm_A 167 LEKVL 171 (195)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 28
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=92.55 E-value=0.2 Score=42.14 Aligned_cols=121 Identities=11% Similarity=0.099 Sum_probs=79.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.++..-+++++.+|.+.++. ..|...-++ |.... ...
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~~~--g~~~~-----------------------~~~--------- 63 (169)
T 3oov_A 19 EVLRLCAEGLHDVLGYERVNILMADTAR-TSLSFVAAV--GTADF-----------------------NPA--------- 63 (169)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEECTTS-SEEEEEEEE--SCSSC-----------------------CCT---------
T ss_pred HHHHHHHHHHHHhhCCceEEEEEEeCCC-CeEEEEEEe--Cchhh-----------------------hhh---------
Confidence 5578888888889999999999998773 333322111 11000 000
Q ss_pred Hhhccceeeec--CCCcceeEeecCCceeeecCCCCcc--------c-ccccCCceEEEEeeC-----CceEeeccccc-
Q 041101 85 ALAQLPSFMDL--YSGIHGEVVITNQPKWISLANSSDS--------I-ASHQSNSTRVLIPVF-----GGLIELFAAKH- 147 (433)
Q Consensus 85 ~l~~m~~~f~~--g~Gl~Gk~~~sg~h~Wi~~~~~~~~--------~-~~~~gIqTiv~IPv~-----~GVveLGS~~~- 147 (433)
...|++ +.|+.|+++.+|++.++.+...... . ....+++.++++|+. -|||.+++...
T Consensus 64 -----~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~ 138 (169)
T 3oov_A 64 -----GVVLPLDQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSR 138 (169)
T ss_dssp -----TCEEESSGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSS
T ss_pred -----cccCCcccccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccC
Confidence 012445 7899999999999999975542111 1 123578999999983 29999998642
Q ss_pred ---cccChHHHHHHHHhcccc
Q 041101 148 ---ISKDQNIIELVLAHCNTS 165 (433)
Q Consensus 148 ---i~Ed~~~v~~vk~~f~~~ 165 (433)
=.+|..+++.+-...+..
T Consensus 139 ~~f~~~d~~~l~~~a~~~a~a 159 (169)
T 3oov_A 139 RSLNDTDVDTIKLFADQASSA 159 (169)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 356778888777766543
No 29
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=92.02 E-value=0.11 Score=46.34 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=53.3
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc--ccCCceEEEEeeC-----CceEeecccccc---ccChHHHHHHHHh
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS--HQSNSTRVLIPVF-----GGLIELFAAKHI---SKDQNIIELVLAH 161 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~--~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed~~~v~~vk~~ 161 (433)
.+++|+|+.|+|+.+|+++.|.+.... +.+. ..+++..+|||+. =|||.+.+.+.- .+|..|++.+-..
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~-p~~~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAH-PDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGS-TTCCCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EeccCCChHHHHHhCCcEEEECCcccC-cchhhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999876532 2232 3578899999983 299999985432 4677787777666
Q ss_pred cc
Q 041101 162 CN 163 (433)
Q Consensus 162 f~ 163 (433)
..
T Consensus 156 la 157 (167)
T 3mmh_A 156 LE 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=91.95 E-value=0.26 Score=40.91 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.++..++.++..-+++++.+|.+.++ .+.|.+.- +.|... . ...
T Consensus 27 ~~l~~~~~~~~~~~~~~~~~i~l~~~~-~~~l~~~~--~~g~~~--------------~---------~~~--------- 71 (171)
T 3ci6_A 27 DSLDIMVNQVADAMKVDVCSIYLLDER-NQRYLLMA--SKGLNP--------------E---------SVG--------- 71 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETT-TTEEEEEE--EESSCG--------------G---------GTT---------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEeCC-CCEEEEEe--ccCCCc--------------c---------ccc---------
Confidence 446777777777788999999999876 33333221 011100 0 000
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCcc-----cccccCCceEEEEeeC-----CceEeecccccc---ccC
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS-----IASHQSNSTRVLIPVF-----GGLIELFAAKHI---SKD 151 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~-----~~~~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed 151 (433)
...+++++|+.|+++.++++.++.+...... ..-..|++++++||+. -|||.+++.+.- .+|
T Consensus 72 -----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~ 146 (171)
T 3ci6_A 72 -----HVSLQLSEGLVGLVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAA 146 (171)
T ss_dssp -----TCEEETTSHHHHHHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHH
T ss_pred -----ceeeeccCCeehhhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHH
Confidence 0136788999999999999999975431110 0123578999999983 289999987542 346
Q ss_pred hHHHHHHHHhccc
Q 041101 152 QNIIELVLAHCNT 164 (433)
Q Consensus 152 ~~~v~~vk~~f~~ 164 (433)
..+++.+-..++.
T Consensus 147 ~~~l~~la~~~a~ 159 (171)
T 3ci6_A 147 ESFLVTLCAQLSG 159 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776666644
No 31
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=91.92 E-value=0.098 Score=45.08 Aligned_cols=65 Identities=6% Similarity=0.194 Sum_probs=48.2
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcccccccCCceEEEEeeC-----CceEeeccc-ccc---ccChHHHHHHHHhc
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVF-----GGLIELFAA-KHI---SKDQNIIELVLAHC 162 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~~~gIqTiv~IPv~-----~GVveLGS~-~~i---~Ed~~~v~~vk~~f 162 (433)
.+++|+|+.|+++.+|+++++.+... +. |++.++|||+. -|||.|+.. ..- .+|..+++.+-++.
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~-d~-----~~~s~l~vPL~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~a 128 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDG-PG-----LGGPALVLPLRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQA 128 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCT-TS-----CEEEEEEEEEEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHhhcCceEEecCccc-CC-----CCCeEEEEEEccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999986542 22 78999999984 299999876 332 34556665555444
No 32
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=91.22 E-value=0.16 Score=43.59 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=77.4
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCce-E-EEcCccccCCCCCCcceeeccccccccccccccccccccCcccchh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRF-I-EWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKA 82 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~-L-~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 82 (433)
+.|+..|+.+++--+.++|.+|.+.++...+ . .+.. +.... . .... . .
T Consensus 31 ~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~----~~~~~-------~----~~~~-----~-~--------- 80 (189)
T 2zmf_A 31 SLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDI----GEEKE-------G----KPVF-----K-K--------- 80 (189)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECC----SCEET-------T----EECC-----E-E---------
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEec----ccccc-------c----cccc-----c-c---------
Confidence 3467777777777789999999998873321 1 1111 10000 0 0000 0 0
Q ss_pred hhHhhccceeeecCCCcceeEeecCCceeeecCCCCcc------cccccCCceEEEEeeC--C---ceEeeccccc----
Q 041101 83 CEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS------IASHQSNSTRVLIPVF--G---GLIELFAAKH---- 147 (433)
Q Consensus 83 ~~~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~------~~~~~gIqTiv~IPv~--~---GVveLGS~~~---- 147 (433)
.....++.+.|+.|+++.+|++.++.+...... .....+++.++|+|+. + |||.+.....
T Consensus 81 -----~~~~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f 155 (189)
T 2zmf_A 81 -----TKEIRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAF 155 (189)
T ss_dssp -----CCCCEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSC
T ss_pred -----ccccccCCCccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCc
Confidence 001247789999999999999999976542111 0123578899999983 2 7888864432
Q ss_pred cccChHHHHHHHHhcccc
Q 041101 148 ISKDQNIIELVLAHCNTS 165 (433)
Q Consensus 148 i~Ed~~~v~~vk~~f~~~ 165 (433)
=.+|..+++.+-...+..
T Consensus 156 ~~~d~~ll~~lA~q~a~A 173 (189)
T 2zmf_A 156 SKTDENNFKMFAVFCALA 173 (189)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 346788888887777554
No 33
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=91.17 E-value=0.17 Score=45.00 Aligned_cols=70 Identities=13% Similarity=0.293 Sum_probs=52.4
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc--ccCCceEEEEeeC--C---ceEeecccccc---ccChHHHHHHHHh
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS--HQSNSTRVLIPVF--G---GLIELFAAKHI---SKDQNIIELVLAH 161 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~--~~gIqTiv~IPv~--~---GVveLGS~~~i---~Ed~~~v~~vk~~ 161 (433)
.+++|+|+.|+|+.+|+++-|.+..... .+. ..+.+..+|||+. + |||.+.|.+.- .+|..+++.+-..
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~~p-~~i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 154 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQFK-GHIACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKI 154 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGST-TCCGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEECCcccCc-cccccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999998765322 232 3567899999983 2 99999985432 4677777777665
Q ss_pred c
Q 041101 162 C 162 (433)
Q Consensus 162 f 162 (433)
+
T Consensus 155 l 155 (160)
T 3ksh_A 155 I 155 (160)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=90.32 E-value=0.55 Score=42.61 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=36.6
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEeeC
Q 041101 385 RDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFN 423 (433)
Q Consensus 385 ~~~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~~ 423 (433)
..+.|.|.|++++|++.+|..+|-++|+.|..+...+.+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 458899999999999999999999999999999999876
No 35
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=89.43 E-value=0.14 Score=44.07 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=54.8
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcc------cccccCCceEEEEeeC-----CceEeecccccc----ccChHHHH
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDS------IASHQSNSTRVLIPVF-----GGLIELFAAKHI----SKDQNIIE 156 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~------~~~~~gIqTiv~IPv~-----~GVveLGS~~~i----~Ed~~~v~ 156 (433)
.+++++|+.|+++.+|+++++.+...... .....+++.++|||+. -|||.|++...- .+|..+++
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~ 164 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFK 164 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHH
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 47789999999999999999986532111 0123578899999983 299999987644 56888888
Q ss_pred HHHHhcccc
Q 041101 157 LVLAHCNTS 165 (433)
Q Consensus 157 ~vk~~f~~~ 165 (433)
.+-...+..
T Consensus 165 ~la~~~a~a 173 (189)
T 2e4s_A 165 MFAVFCALA 173 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 36
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=88.05 E-value=0.47 Score=38.87 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=76.5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.+++-.+.+++.+|.+.++ +.|.+.- ..|... . ..
T Consensus 9 ~~l~~i~~~~~~~~~~~~~~i~l~d~~--~~l~~~~--~~g~~~--------------~---------~~---------- 51 (153)
T 2w3g_A 9 ATLRAIVHSATSLVDARYGAMEVHDRQ--HRVLHFV--YEGIDE--------------E---------TV---------- 51 (153)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEECTT--CCEEEEE--EESCCH--------------H---------HH----------
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEECCC--CCEEEEE--EecCCH--------------H---------HH----------
Confidence 457777777888889999999998744 2232221 001100 0 00
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCc----ccccccCCceEEEEeeC-----CceEeeccccc----cccC
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSD----SIASHQSNSTRVLIPVF-----GGLIELFAAKH----ISKD 151 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~----~~~~~~gIqTiv~IPv~-----~GVveLGS~~~----i~Ed 151 (433)
..+ ..++.++|+.|+++.++++.++.+..... ......+++.+++||+. -|||.+++.+. -.+|
T Consensus 52 --~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~ 128 (153)
T 2w3g_A 52 --RRI-GHLPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDD 128 (153)
T ss_dssp --HHH-CSCCCSCTHHHHHHHSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHH
T ss_pred --Hhh-ccCCCCCCHHHHHHhcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHH
Confidence 000 12457899999999999999997543111 00123578999999983 29999998755 3457
Q ss_pred hHHHHHHHHhcccc
Q 041101 152 QNIIELVLAHCNTS 165 (433)
Q Consensus 152 ~~~v~~vk~~f~~~ 165 (433)
..+++.+-..++..
T Consensus 129 ~~~l~~la~~~a~a 142 (153)
T 2w3g_A 129 EVLVQALAAAAGIA 142 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666443
No 37
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=86.48 E-value=2 Score=36.55 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=52.2
Q ss_pred cCCCcceeEeecCCceeeecCCCCccc-----ccccCCceEEEEeeC------CceEeecc-ccc---cccChHHHHHHH
Q 041101 95 LYSGIHGEVVITNQPKWISLANSSDSI-----ASHQSNSTRVLIPVF------GGLIELFA-AKH---ISKDQNIIELVL 159 (433)
Q Consensus 95 ~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~-----~~~~gIqTiv~IPv~------~GVveLGS-~~~---i~Ed~~~v~~vk 159 (433)
.|+|+.|+++.+|++..+.+....... ....|++..++||+. -|||.+++ ... =.+|..+++.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la 149 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLA 149 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 478999999999999998755322211 123689999999982 38999998 443 346778888888
Q ss_pred Hhccccc
Q 041101 160 AHCNTSI 166 (433)
Q Consensus 160 ~~f~~~~ 166 (433)
..++..+
T Consensus 150 ~~~a~al 156 (181)
T 2qyb_A 150 GQLAQAV 156 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 38
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=86.15 E-value=1.5 Score=39.21 Aligned_cols=39 Identities=5% Similarity=0.054 Sum_probs=35.9
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEeeC
Q 041101 385 RDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFN 423 (433)
Q Consensus 385 ~~~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~~ 423 (433)
..+.|.|.|++++|++.+|.++|.+.|++|..+...+.+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 457799999999999999999999999999999998875
No 39
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=84.27 E-value=1.2 Score=36.92 Aligned_cols=116 Identities=6% Similarity=-0.016 Sum_probs=71.2
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.++.--+.+++.+|.+.++. .|...- ..|... .
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~--~l~~~a--~~g~~~-----------------------------------~ 46 (151)
T 3hcy_A 6 EVYEATLDAIQGALNCDRASILLFDEAG--TMRFVA--ARGLSE-----------------------------------H 46 (151)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTS--CEEEEE--EESCCH-----------------------------------H
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEcCCC--cEEEEe--eCCCCH-----------------------------------H
Confidence 4577778888888889999999997763 333221 001000 0
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCcc--c----ccccCCceEEEEeeC-----CceEeecccccc---cc
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS--I----ASHQSNSTRVLIPVF-----GGLIELFAAKHI---SK 150 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~--~----~~~~gIqTiv~IPv~-----~GVveLGS~~~i---~E 150 (433)
+.. ...|.|..|+++.+|+++++.+...... . ....|++..++||+. -|||.+.+.+.- .+
T Consensus 47 ~~~-----~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~ 121 (151)
T 3hcy_A 47 YQR-----AVDGHSPWITGANEPEPIFVENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADS 121 (151)
T ss_dssp HHH-----HTCBCCSCC---CCCCCEEESCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHH
T ss_pred HHh-----hccCCCchhhhhhcCCcEEEeChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHH
Confidence 000 0258899999999999999976542211 1 123689999999983 288888876432 34
Q ss_pred ChHHHHHHHHhccc
Q 041101 151 DQNIIELVLAHCNT 164 (433)
Q Consensus 151 d~~~v~~vk~~f~~ 164 (433)
|..+++.+-.+.+.
T Consensus 122 ~~~ll~~~a~~~a~ 135 (151)
T 3hcy_A 122 EIGMALTIARQLGF 135 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 40
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=80.64 E-value=2 Score=42.10 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhhH
Q 041101 6 KAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEA 85 (433)
Q Consensus 6 ~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 85 (433)
.|+..++.++.--+.+++.+|.+.++. +.|...-. ..+. . . .
T Consensus 218 ~l~~i~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~~-~~~~-~-------------------------~-~--------- 259 (398)
T 1ykd_A 218 TLKRVMDEAKELMNADRSTLWLIDRDR-HELWTKIT-QDNG-S-------------------------T-K--------- 259 (398)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEETTT-TEEEEEEE-CSSS-C-------------------------E-E---------
T ss_pred HHHHHHHHHHHHhCcCeEEEEEEECCC-CEEEEEEe-cCCC-c-------------------------e-e---------
Confidence 466666667777789999999998773 33322210 0000 0 0 0
Q ss_pred hhccceeeecCCCcceeEeecCCceeee-cCCCCcccc-----c----ccCCceEEEEeeCC------ceEeecccc
Q 041101 86 LAQLPSFMDLYSGIHGEVVITNQPKWIS-LANSSDSIA-----S----HQSNSTRVLIPVFG------GLIELFAAK 146 (433)
Q Consensus 86 l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~-~~~~~~~~~-----~----~~gIqTiv~IPv~~------GVveLGS~~ 146 (433)
...+++|+|+.|+++.+|++.++. +... +..+ + ...++.++|||+.. |||.+.+..
T Consensus 260 ----~~~~~~~~~~~~~v~~~~~~~~i~~d~~~-~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 260 ----ELRVPIGKGFAGIVAASGQKLNIPFDLYD-HPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp ----EEEEETTSHHHHHHHHHCCCEEECSCGGG-STTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred ----eeeccCCCchhhHHhccCCeEEecccccc-CcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 013678999999999999999997 5432 1111 1 12367899999863 999998876
No 41
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=78.44 E-value=0.68 Score=44.69 Aligned_cols=119 Identities=16% Similarity=0.100 Sum_probs=76.2
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..++.+++-.+-+++.+|.+.++. ..|...- ..|.. . .
T Consensus 30 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~--~~g~~--------------------~----~----------- 71 (368)
T 1mc0_A 30 SLQLKVLQYLQQETQATHCCLLLVSEDN-LQLSCKV--IGDKV--------------------L----G----------- 71 (368)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEEEECSSS-CEEEEEE--ETTEE--------------------E----E-----------
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEeCCC-CeEEEEe--cCCCc--------------------c----c-----------
Confidence 3466677777777788889999887763 2222210 00100 0 0
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCcc----cccccCCceEEEEee-CC------ceEeeccccc----cc
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS----IASHQSNSTRVLIPV-FG------GLIELFAAKH----IS 149 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~----~~~~~gIqTiv~IPv-~~------GVveLGS~~~----i~ 149 (433)
-...++.|+|+.|.++.+|++.++.+.....+ .....+++.+++||+ .+ |||.+.+... -.
T Consensus 72 ----~~~~~~~~~g~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~ 147 (368)
T 1mc0_A 72 ----EEVSFPLTMGRLGQVVEDKQCIQLKDLTSDDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTD 147 (368)
T ss_dssp ----EEEEEESSSSSHHHHHHHCCCEEGGGSCHHHHHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCS
T ss_pred ----cceeeccccCHHHHHHhcCCeEEecccccccccccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCH
Confidence 00236789999999999999999976542111 122346899999998 33 8999876543 34
Q ss_pred cChHHHHHHHHhcccc
Q 041101 150 KDQNIIELVLAHCNTS 165 (433)
Q Consensus 150 Ed~~~v~~vk~~f~~~ 165 (433)
+|..+++.+-..++..
T Consensus 148 ~d~~~l~~la~~~~~a 163 (368)
T 1mc0_A 148 EDEHVIQHCFHYTGTV 163 (368)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888776666543
No 42
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=78.00 E-value=1.1 Score=43.31 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=54.2
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc-----ccC--CceEEEEeeC-C-----ceEeecccccc----ccChHH
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS-----HQS--NSTRVLIPVF-G-----GLIELFAAKHI----SKDQNI 154 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~-----~~g--IqTiv~IPv~-~-----GVveLGS~~~i----~Ed~~~ 154 (433)
.+++++|+.|+++.+|++.++.+..... .+. ..| ++.++|||+. + |||.+++...- .+|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~-~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~l 323 (368)
T 1mc0_A 245 RIPADQGIAGHVATTGQILNIPDAYAHP-LFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDL 323 (368)
T ss_dssp EECTTSHHHHHHHHHCCCEEESCSTTCT-TCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHH
T ss_pred eecCCCceeeeehhhCCEEEecCcccCc-ccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHH
Confidence 4678899999999999999998654211 111 123 4899999983 3 89999987543 568888
Q ss_pred HHHHHHhccccc
Q 041101 155 IELVLAHCNTSI 166 (433)
Q Consensus 155 v~~vk~~f~~~~ 166 (433)
++.+-..++..+
T Consensus 324 l~~la~~~a~ai 335 (368)
T 1mc0_A 324 ATAFSIYCGISI 335 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776543
No 43
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=77.91 E-value=5.7 Score=38.71 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=38.0
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEee--CCEEE
Q 041101 384 DRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTF--NGKVL 427 (433)
Q Consensus 384 ~~~~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~--~~~vl 427 (433)
...+.|.|.|++++|+...|...|-+.|..|+.++-+.. .+.++
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff 65 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF 65 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE
Confidence 456889999999999999999999999999999998854 45543
No 44
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=75.89 E-value=1.7 Score=46.78 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=53.9
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCccccc-------ccCCceEEEEee--C-C---ceEeecccccc----ccChHH
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIAS-------HQSNSTRVLIPV--F-G---GLIELFAAKHI----SKDQNI 154 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~-------~~gIqTiv~IPv--~-~---GVveLGS~~~i----~Ed~~~ 154 (433)
.+++|+|+.|+|+.+|+++++.+.....+ +. ..+++.++|+|+ . + |||.+.+...- .+|..+
T Consensus 245 ~~~~~~gi~g~v~~~g~~v~i~d~~~d~~-~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~l 323 (691)
T 3ibj_A 245 RIPADQGIAGHVATTGQILNIPDAYAHPL-FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDL 323 (691)
T ss_dssp EEETTSHHHHHHHHHCSCEEESCSTTSTT-C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHH
T ss_pred eccCCCCHHHHHHHhCCEEEecCcccCcc-ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHH
Confidence 47788999999999999999986542211 11 134889999998 3 2 89999876543 579999
Q ss_pred HHHHHHhcccc
Q 041101 155 IELVLAHCNTS 165 (433)
Q Consensus 155 v~~vk~~f~~~ 165 (433)
++.+-..++..
T Consensus 324 l~~lA~~~aiA 334 (691)
T 3ibj_A 324 ATAFSIYCGIS 334 (691)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887776643
No 45
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=65.23 E-value=2.1 Score=45.90 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=75.3
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeeccccccccccccccccccccCcccchhhh
Q 041101 5 EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACE 84 (433)
Q Consensus 5 ~~Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (433)
+.|+..|+.+++.-+-+++.+|.+.++ .+.|. -. ...+ . ... .
T Consensus 31 ~ll~~il~~l~~~l~ad~~~i~L~d~~-~~~l~-~~----~~~g-~-----~~~-----------------~-------- 73 (691)
T 3ibj_A 31 SLQLKVLQYLQQETRASRCCLLLVSED-NLQLS-CK----VIGD-K-----VLG-----------------E-------- 73 (691)
T ss_dssp HHHHHHHHHHHHHTTBSCEEEEEECTT-SSEEE-EE----EETT-E-----EEE-----------------E--------
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECC-CCeEE-EE----ecCC-C-----ccc-----------------c--------
Confidence 457888888888889999999999887 33331 11 1000 0 000 0
Q ss_pred HhhccceeeecCCCcceeEeecCCceeeecCCCCcc----cccccCCceEEEEeeC-C------ceEeeccccc----cc
Q 041101 85 ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS----IASHQSNSTRVLIPVF-G------GLIELFAAKH----IS 149 (433)
Q Consensus 85 ~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~----~~~~~gIqTiv~IPv~-~------GVveLGS~~~----i~ 149 (433)
...+++| |+.|+++.+|+++++.+...... ......+++++|||+. + |||.+..... -.
T Consensus 74 -----~~~~p~~-Gi~g~v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~ 147 (691)
T 3ibj_A 74 -----EVSFPLT-GCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTD 147 (691)
T ss_dssp -----EEEEECC-SSSHHHHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCT
T ss_pred -----ceecCCc-cHHHHHHHHCCeEEeccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCH
Confidence 0236789 99999999999999976542111 1112458899999984 4 7999775432 35
Q ss_pred cChHHHHHHHHhcc
Q 041101 150 KDQNIIELVLAHCN 163 (433)
Q Consensus 150 Ed~~~v~~vk~~f~ 163 (433)
+|..+++.+-..++
T Consensus 148 ~d~~lL~~la~~~a 161 (691)
T 3ibj_A 148 EDEHVIQHCFHYTS 161 (691)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888877655554
No 46
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=58.68 E-value=2 Score=42.07 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=40.0
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcc-ccc--------ccCCceEEEEeeC---C---ceEeeccc
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDS-IAS--------HQSNSTRVLIPVF---G---GLIELFAA 145 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~-~~~--------~~gIqTiv~IPv~---~---GVveLGS~ 145 (433)
.++.|+|+.|.|+.+|++++|.+....+. ..| ..++++++|||+. + |||.+...
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 36789999999999999999986542211 111 2468899999983 2 79999876
No 47
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=58.01 E-value=33 Score=28.62 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=32.4
Q ss_pred EEEEccCCCChHHHHHHHHHcCCCeEEEEEEEeeCCEEEEEEEe
Q 041101 389 IKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRV 432 (433)
Q Consensus 389 I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~~~~vl~~f~v 432 (433)
|-+.-+.+||.+.+++++|.+.|+.|...-.+.-++...-+|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 44456789999999999999999999765544235555555554
No 48
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=57.45 E-value=13 Score=32.18 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=51.7
Q ss_pred eecCCCcceeEeecCCceeeecCCCCccc------ccccCCceEEEEeeC-----CceEeecccccc---ccChHHHHHH
Q 041101 93 MDLYSGIHGEVVITNQPKWISLANSSDSI------ASHQSNSTRVLIPVF-----GGLIELFAAKHI---SKDQNIIELV 158 (433)
Q Consensus 93 f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~------~~~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed~~~v~~v 158 (433)
++.+.++.|+++.+|++.=+ +....+.. ....|++.++|+|+. -|||-|++...- .+|..+++.+
T Consensus 55 ip~~~s~~~~v~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~l 133 (165)
T 3o5y_A 55 IPKEQSLYWSALDQRQTIFR-SLTDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQL 133 (165)
T ss_dssp ECSTTCHHHHHHHHTSCEEE-ESCCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cCCccCHHHHHHHhCCeEEE-cCcccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 56678899999999999743 32211111 234789999999982 299999987643 4678888888
Q ss_pred HHhccccc
Q 041101 159 LAHCNTSI 166 (433)
Q Consensus 159 k~~f~~~~ 166 (433)
-......+
T Consensus 134 a~~~aiai 141 (165)
T 3o5y_A 134 TDHLAVSI 141 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776554
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.16 E-value=24 Score=26.00 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041101 274 ERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 274 Er~RR~~~n~~~~~LrslvP~~~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
||++|.....+..+-++= ..-.+||..|+.+++.|+.+...+.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888771 2456778888888888877766544
No 50
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=57.02 E-value=2.2 Score=47.28 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcccc-------cccCCceEEEEeeCC------ceEeeccccc------cccCh
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDSIA-------SHQSNSTRVLIPVFG------GLIELFAAKH------ISKDQ 152 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~-------~~~gIqTiv~IPv~~------GVveLGS~~~------i~Ed~ 152 (433)
.+++|.|+.|.|+.+|++++|.+... +..+ ...++++++|||+.. |||++.+... -.+|.
T Consensus 225 ~~p~~~gi~g~v~~~g~pv~I~D~~~-dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D~ 303 (878)
T 3bjc_A 225 RLEWNKGIVGHVAALGEPLNIKDAYE-DPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDE 303 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCccHHHHHHhcCceEEeCCccc-CcccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHHH
Confidence 47789999999999999999986542 1111 123478999999843 8999986543 35688
Q ss_pred HHHHHHHHhccccc
Q 041101 153 NIIELVLAHCNTSI 166 (433)
Q Consensus 153 ~~v~~vk~~f~~~~ 166 (433)
.+++.+-..++..+
T Consensus 304 ~lL~~lA~~~a~AL 317 (878)
T 3bjc_A 304 KDFAAYLAFCGIVL 317 (878)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776654
No 51
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=57.01 E-value=8 Score=33.17 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCCcceeEeecCCceeeecCCCCc----cccc-ccCCceEEEEeeC-----CceEeecccccc---ccChHHHHHHHHhc
Q 041101 96 YSGIHGEVVITNQPKWISLANSSD----SIAS-HQSNSTRVLIPVF-----GGLIELFAAKHI---SKDQNIIELVLAHC 162 (433)
Q Consensus 96 g~Gl~Gk~~~sg~h~Wi~~~~~~~----~~~~-~~gIqTiv~IPv~-----~GVveLGS~~~i---~Ed~~~v~~vk~~f 162 (433)
+.|+.|+++.+|++..+.+..... ...+ ..|++.++|||+. -|||.+.+...- .+|..+++.+-...
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~ 173 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQLV 173 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHH
Confidence 478889999999999987543211 1112 2489999999983 299999655432 45777888777766
Q ss_pred ccc
Q 041101 163 NTS 165 (433)
Q Consensus 163 ~~~ 165 (433)
+..
T Consensus 174 aiA 176 (184)
T 3p01_A 174 AIA 176 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=55.20 E-value=29 Score=31.54 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=36.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEee-C-CEEEEEEEe
Q 041101 387 FLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTF-N-GKVLNILRV 432 (433)
Q Consensus 387 ~~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~-~-~~vl~~f~v 432 (433)
..|.|.-++++|.|.+|..+|...|+.|.+.++... + +...-+|+|
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV 77 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV 77 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEE
Confidence 457788899999999999999999999999988743 3 444444444
No 53
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=54.15 E-value=2.7 Score=46.67 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred eeecCCCcceeEeecCCceeeecCCCCcc--ccc--c-----cCCceEEEEeeC-C------ceEeeccccc--------
Q 041101 92 FMDLYSGIHGEVVITNQPKWISLANSSDS--IAS--H-----QSNSTRVLIPVF-G------GLIELFAAKH-------- 147 (433)
Q Consensus 92 ~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~--~~~--~-----~gIqTiv~IPv~-~------GVveLGS~~~-------- 147 (433)
.+++++|+.|+++.+|+++++.+.....+ ... . .+++.++|+|+. + |||+|.+...
T Consensus 407 ~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~~~~ 486 (878)
T 3bjc_A 407 ANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKP 486 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccCCCC
Confidence 46778999999999999999986532111 001 1 248899999983 2 8999977543
Q ss_pred -cccChHHHHHHHHhcccc
Q 041101 148 -ISKDQNIIELVLAHCNTS 165 (433)
Q Consensus 148 -i~Ed~~~v~~vk~~f~~~ 165 (433)
=.+|..+++.+-..++..
T Consensus 487 Ft~~d~~lL~~lA~~aaiA 505 (878)
T 3bjc_A 487 FNRNDEQFLEAFVIFCGLG 505 (878)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 345888888877777654
No 54
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.44 E-value=25 Score=23.40 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041101 298 MDRAAILGDAAEYIKELLQEVDKLQDELKEN 328 (433)
Q Consensus 298 ~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~ 328 (433)
|..+.-|+++-+-|..|+.+++.|++++..+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566779999999999999999999988753
No 55
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=40.96 E-value=77 Score=26.27 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=29.3
Q ss_pred EEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEee
Q 041101 388 LIKLLCEHERGGFLRLMEAINSLELQVIDANVTTF 422 (433)
Q Consensus 388 ~I~I~c~~r~g~L~~Il~aLe~LgL~V~~a~ist~ 422 (433)
.|.|.-++++|.+.+|..+|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 35667788999999999999999999988776543
No 56
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.52 E-value=46 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 041101 304 LGDAAEYIKELLQEVDKLQDELKEN 328 (433)
Q Consensus 304 l~~ai~YI~~Lq~~v~~L~~~~~~~ 328 (433)
+.+--+||++|+++-.+|+.-++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 5677799999999998888766543
No 57
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.92 E-value=25 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 041101 309 EYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 309 ~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
.||..|+++++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588888889988888887654
No 58
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.81 E-value=23 Score=26.09 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 041101 309 EYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 309 ~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
.||..|+++|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887653
No 59
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=36.14 E-value=1.9e+02 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=38.3
Q ss_pred ceEEEEEecCceEEEEEEccCC------CChHHHHHHHHHcCCCeEEEEEEEee
Q 041101 375 VRVEVNQINDRDFLIKLLCEHE------RGGFLRLMEAINSLELQVIDANVTTF 422 (433)
Q Consensus 375 ~~VeV~~i~~~~~~I~I~c~~r------~g~L~~Il~aLe~LgL~V~~a~ist~ 422 (433)
++|.|+. .++.+.|++...+. ..-+.+|-++|.+-||.+..++|+.-
T Consensus 101 l~V~l~~-~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKL-DDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEE-ETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEE-ECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 5666664 47789999999875 45688999999999999999999853
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.70 E-value=30 Score=23.62 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 041101 309 EYIKELLQEVDKLQDELKENED 330 (433)
Q Consensus 309 ~YI~~Lq~~v~~L~~~~~~~~~ 330 (433)
.|+.+|+.++++|+.+..++..
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877766554
No 61
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.43 E-value=78 Score=25.49 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=42.8
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhcCC--------------------CCC-CCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 041101 266 PKAKNLITERNRRNKLKDGLFALRALVP--------------------KIS-KMDRAAILGDAAEYIKELLQEVDKLQDE 324 (433)
Q Consensus 266 ~~~~h~~~Er~RR~~~n~~~~~LrslvP--------------------~~~-k~dkasil~~ai~YI~~Lq~~v~~L~~~ 324 (433)
.-.+|...|| ||++|..++..|..=+= ... ...-..-|.++..-|..|+..+..++.-
T Consensus 6 ~d~s~LPpeq-RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 6 EDFSHLPPEQ-QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp SCSSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778887 77788888888876552 211 1112334888888888888888888887
Q ss_pred Hhhhh
Q 041101 325 LKENE 329 (433)
Q Consensus 325 ~~~~~ 329 (433)
+.++.
T Consensus 85 L~e~e 89 (98)
T 2ke4_A 85 LAEAE 89 (98)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 62
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=32.55 E-value=51 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.0
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 041101 298 MDRAAILGDAAEYIKELLQ 316 (433)
Q Consensus 298 ~dkasil~~ai~YI~~Lq~ 316 (433)
+...-+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4566789999999987665
No 63
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.36 E-value=47 Score=19.72 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 041101 301 AAILGDAAEYIKELLQEVDK 320 (433)
Q Consensus 301 asil~~ai~YI~~Lq~~v~~ 320 (433)
.|-|-+|-+|+.+|+++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35577899999999888753
No 64
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=32.04 E-value=61 Score=28.47 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=40.3
Q ss_pred ecCCCcceeEeecCCceeeecCCCCcccccccCCceEEEEee--CC----ceEeecccccc----ccChHHHHHHHHhcc
Q 041101 94 DLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPV--FG----GLIELFAAKHI----SKDQNIIELVLAHCN 163 (433)
Q Consensus 94 ~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~~~gIqTiv~IPv--~~----GVveLGS~~~i----~Ed~~~v~~vk~~f~ 163 (433)
..|+|+.| +.|.... ..-.+.|+|||+ .+ ||+|+.....+ .||.++++.+-.+..
T Consensus 78 ~~~~~~~g-------pr~~~~t--------g~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a 142 (160)
T 3cit_A 78 TADPLAIG-------PQWLERP--------GTHLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLA 142 (160)
T ss_dssp CCCTTCCS-------CEEEECT--------TSSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccc-------ccccccc--------CcccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 46888888 7888311 122568999998 22 99999766665 478888888877775
Q ss_pred cc
Q 041101 164 TS 165 (433)
Q Consensus 164 ~~ 165 (433)
..
T Consensus 143 ~a 144 (160)
T 3cit_A 143 AH 144 (160)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 65
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.33 E-value=1e+02 Score=24.68 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041101 277 RRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDEL 325 (433)
Q Consensus 277 RR~~~n~~~~~LrslvP~~~k~dkasil~~ai~YI~~Lq~~v~~L~~~~ 325 (433)
.|.+..+.|..|.+.+ .--.+.|=+||..|+++++.|+...
T Consensus 46 kr~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 4455555555555543 1135578899999999999998854
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.16 E-value=47 Score=23.83 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 041101 309 EYIKELLQEVDKLQDELKENE 329 (433)
Q Consensus 309 ~YI~~Lq~~v~~L~~~~~~~~ 329 (433)
.||.+|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998877654
No 67
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=27.48 E-value=1.6e+02 Score=25.15 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=33.8
Q ss_pred CceEEEEEEccC---CCChHHHHHHHHHcCCCeEEEEEEEeeCCEEEEEE
Q 041101 384 DRDFLIKLLCEH---ERGGFLRLMEAINSLELQVIDANVTTFNGKVLNIL 430 (433)
Q Consensus 384 ~~~~~I~I~c~~---r~g~L~~Il~aLe~LgL~V~~a~ist~~~~vl~~f 430 (433)
++-..|.|.... ++|.+.+++++|.+.|+.|...+ +....+..++
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 456777887765 79999999999999999998854 4444444443
No 68
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=27.35 E-value=1.9e+02 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=29.4
Q ss_pred CceEEEEEE-ccCCCChHHHHHHHHHcCCCeEEEEEEEe
Q 041101 384 DRDFLIKLL-CEHERGGFLRLMEAINSLELQVIDANVTT 421 (433)
Q Consensus 384 ~~~~~I~I~-c~~r~g~L~~Il~aLe~LgL~V~~a~ist 421 (433)
.+.+.|.|. -++++|.+.+|++.|.+.|+.|.....++
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 566778774 47789999999999999996666555443
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.50 E-value=56 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041101 308 AEYIKELLQEVDKLQDELKE 327 (433)
Q Consensus 308 i~YI~~Lq~~v~~L~~~~~~ 327 (433)
-.||++|+.+|.+|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888875543
No 70
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.83 E-value=66 Score=20.21 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 041101 311 IKELLQEVDKLQDE 324 (433)
Q Consensus 311 I~~Lq~~v~~L~~~ 324 (433)
+++||+++.+|+..
T Consensus 15 vq~lq~r~drle~t 28 (32)
T 2akf_A 15 VQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555543
No 71
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.82 E-value=80 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 041101 304 LGDAAEYIKELLQEVDKLQDELKEN 328 (433)
Q Consensus 304 l~~ai~YI~~Lq~~v~~L~~~~~~~ 328 (433)
+..||+-|.-||.++++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999998876643
No 72
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=23.11 E-value=1.6e+02 Score=25.21 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=30.8
Q ss_pred CceEEEEEEc-cCCCChHHHHHHHHHcCCCeEEEEEEE
Q 041101 384 DRDFLIKLLC-EHERGGFLRLMEAINSLELQVIDANVT 420 (433)
Q Consensus 384 ~~~~~I~I~c-~~r~g~L~~Il~aLe~LgL~V~~a~is 420 (433)
.+...|.|.. +.++|.+.+|+++|.+.|+.|.....+
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 5678888884 788999999999999999988776543
No 73
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=21.07 E-value=1.1e+02 Score=26.29 Aligned_cols=72 Identities=8% Similarity=0.091 Sum_probs=49.0
Q ss_pred ecCCCccee----EeecCCceeeecCCCCc-----ccc-cccCCceEEEEeeC--C---ceEeeccccc---cccChHHH
Q 041101 94 DLYSGIHGE----VVITNQPKWISLANSSD-----SIA-SHQSNSTRVLIPVF--G---GLIELFAAKH---ISKDQNII 155 (433)
Q Consensus 94 ~~g~Gl~Gk----~~~sg~h~Wi~~~~~~~-----~~~-~~~gIqTiv~IPv~--~---GVveLGS~~~---i~Ed~~~v 155 (433)
.+++|..|. ++.+|+++-+.+..... ... -..|++..+|||+. + |||.+.+... -.+|..++
T Consensus 105 d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll 184 (208)
T 2lb5_A 105 DVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVV 184 (208)
T ss_dssp CGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHH
Confidence 345677776 78999998887654211 111 13689999999983 2 9999988643 23567788
Q ss_pred HHHHHhcccc
Q 041101 156 ELVLAHCNTS 165 (433)
Q Consensus 156 ~~vk~~f~~~ 165 (433)
+.+-..++..
T Consensus 185 ~~la~~~a~a 194 (208)
T 2lb5_A 185 QLLADQVSIA 194 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777554
No 74
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.05 E-value=47 Score=30.18 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHHhHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 041101 277 RRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQ 322 (433)
Q Consensus 277 RR~~~n~~~~~LrslvP~~~k~dkasil~~ai~YI~~Lq~~v~~L~ 322 (433)
=|..++.-...||-|+-. .-..-..++.+||+|++.|-+-...|+
T Consensus 52 v~~Dl~~F~~QL~qL~~~-~i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKD-DISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887622 112344689999999999987666554
Done!