BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041103
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 114/443 (25%), Positives = 168/443 (37%), Gaps = 127/443 (28%)
Query: 157 PQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI 216
P+ ++ + LW L+R S + ++ +LL LP P V+P RFREVYYWDSY+ +
Sbjct: 80 PEGQSLREHIDGLWPVLTR----STENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTM 135
Query: 217 ----------------------------------------SQPPILSAMVYDIYNRTGDF 236
SQPP + MV + GD
Sbjct: 136 LGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDA 195
Query: 237 DFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHT--------LSRYYAMWNKPRPESST 288
+K+ LP + KE+ +W + N+Q Q L+RY+ + PRPES
Sbjct: 196 -ALKQYLPQMQKEYAYWMDGVE--NLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWV 252
Query: 289 IDKAHSSKLLNASDKE---------------------NTSDFTTLAITSILPIDLNIFIL 327
D A + N E N TL TSI+P+DLN +
Sbjct: 253 EDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMF 312
Query: 328 KMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECR 387
KME +A ++ GDN A + A AR++ I WN+++G + DY S + R
Sbjct: 313 KMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADY----DLKSHKVR 368
Query: 388 RWKXXXXXXXXXXXXXVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ- 446
P++++ D K+ ++ LL G+ T+ +SG+Q
Sbjct: 369 N--------QLTAAALFPLYVNAAAKDRA--NKMATATKTH-LLQPGGLNTTSVKSGQQW 417
Query: 447 --------CNYVA---------------------------YKETGAMHEKYDVEKCRDIG 471
+VA Y + EKYDV G
Sbjct: 418 DAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGG 477
Query: 472 GGGEYIPQTGFSWSNGAVLAFLE 494
GGGEY Q GF W+NG L L+
Sbjct: 478 GGGEYPLQDGFGWTNGVTLKMLD 500
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 160/443 (36%), Gaps = 127/443 (28%)
Query: 157 PQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI 216
P+ ++ + LW L+R S + ++ +LL LP P V+P RFREVYYWDSY+
Sbjct: 80 PEGQSLREHIDGLWPVLTR----STENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTX 135
Query: 217 ----------------------------------------SQPPILSAMVYDIYNRTGDF 236
SQPP + V + GD
Sbjct: 136 LGLAESGHWDKVADXVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALXVELLAQHEGDA 195
Query: 237 DFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHT--------LSRYYAMWNKPRPESST 288
+K+ LP KE+ +W + N+Q Q L+RY+ + PRPES
Sbjct: 196 -ALKQYLPQXQKEYAYWXDGVE--NLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWV 252
Query: 289 IDKAHSSKLLNASDKE---------------------NTSDFTTLAITSILPIDLNIFIL 327
D A + N E N TL TSI+P+DLN
Sbjct: 253 EDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWXDNPQQLNTLRTTSIVPVDLNSLXF 312
Query: 328 KMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECR 387
K E +A ++ GDN A + A AR++ I WN+++G + DY S + R
Sbjct: 313 KXEKILARASKAAGDNAXANQYETLANARQKGIEKYLWNDQQGWYADY----DLKSHKVR 368
Query: 388 RWKXXXXXXXXXXXXXVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ- 446
P++++ D + LL G+ T+ +SG+Q
Sbjct: 369 N--------QLTAAALFPLYVNAAAKDRANKXATAT---KTHLLQPGGLNTTSVKSGQQW 417
Query: 447 --------CNYVA---------------------------YKETGAMHEKYDVEKCRDIG 471
+VA Y + EKYDV G
Sbjct: 418 DAPNGWAPLQWVATEGLQNYGQKEVAXDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGG 477
Query: 472 GGGEYIPQTGFSWSNGAVLAFLE 494
GGGEY Q GF W+NG L L+
Sbjct: 478 GGGEYPLQDGFGWTNGVTLKXLD 500
>pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific Cysteine Proteinase
Gingipain R (Rgpb)
Length = 435
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 80 KKDFDPKLYVDLSLKSGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYA- 138
K + D K +VD + GL T V K+ + + V+A ++F+ + ++ G+DL Y
Sbjct: 19 KYEGDIKDFVDWKNQRGLRTEV----KVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVL 74
Query: 139 EPPDFVPEPDGFLPKVKNPQV 159
D P P +K+ QV
Sbjct: 75 LVGDHKDIPAKITPGIKSDQV 95
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 323 NIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTS 382
N+F++K D ++A G A++F A + IN+V W+EEK ++D ++G
Sbjct: 699 NLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDCIHADGRR 758
Query: 383 S 383
S
Sbjct: 759 S 759
>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
Bacteroides Thetaiotaomicron
Length = 739
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 318 LPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEK 369
L + +F +E A A +VGD + + K A A K + FWN +K
Sbjct: 453 LSFEQVLFCRSLET-XALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQK 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,021,542
Number of Sequences: 62578
Number of extensions: 684188
Number of successful extensions: 1426
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 17
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)