Query 041103
Match_columns 516
No_of_seqs 274 out of 1105
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02567 alpha,alpha-trehalase 100.0 7E-125 1E-129 1022.5 38.0 450 57-506 1-554 (554)
2 PRK13272 treA trehalase; Provi 100.0 3E-109 5E-114 889.8 35.7 389 67-500 45-540 (542)
3 PRK13271 treA trehalase; Provi 100.0 9E-109 2E-113 892.2 36.0 387 67-499 44-539 (569)
4 PRK13270 treF trehalase; Provi 100.0 1E-108 3E-113 886.5 33.2 387 67-499 55-549 (549)
5 PF01204 Trehalase: Trehalase; 100.0 4E-108 9E-113 890.0 14.0 401 83-497 3-512 (512)
6 KOG0602 Neutral trehalase [Car 100.0 4E-100 9E-105 813.0 24.9 426 61-503 36-571 (600)
7 COG1626 TreA Neutral trehalase 100.0 7.2E-76 1.6E-80 615.5 29.8 390 69-500 56-556 (558)
8 PRK10137 alpha-glucosidase; Pr 100.0 1.1E-38 2.4E-43 354.7 24.1 292 187-497 322-784 (786)
9 PF03200 Glyco_hydro_63: Manno 99.9 7.1E-26 1.5E-30 256.4 20.0 250 217-496 461-801 (801)
10 KOG2161 Glucosidase I [Carbohy 99.9 1E-21 2.2E-26 211.9 19.1 283 191-496 422-847 (849)
11 PF06202 GDE_C: Amylo-alpha-1, 99.5 7.7E-12 1.7E-16 131.9 23.2 233 213-499 80-316 (370)
12 TIGR01561 gde_arch glycogen de 99.3 7.4E-11 1.6E-15 130.1 20.0 225 215-492 346-573 (575)
13 COG3408 GDB1 Glycogen debranch 99.0 3.3E-09 7.1E-14 118.7 15.9 216 217-500 339-555 (641)
14 PF05592 Bac_rhamnosid: Bacter 99.0 1.2E-09 2.6E-14 119.7 10.9 154 197-413 190-345 (509)
15 PF04685 DUF608: Protein of un 98.5 4.4E-07 9.4E-12 95.7 11.1 139 199-376 81-221 (365)
16 TIGR01577 oligosac_amyl oligos 98.0 0.00015 3.3E-09 81.7 17.4 150 221-426 357-507 (616)
17 TIGR01531 glyc_debranch glycog 97.7 0.0011 2.3E-08 79.3 17.4 167 314-498 1217-1399(1464)
18 COG4354 Predicted bile acid be 95.7 0.22 4.7E-06 54.8 14.2 170 217-440 434-629 (721)
19 PF06824 DUF1237: Protein of u 94.9 1.1 2.4E-05 48.2 16.2 259 208-493 119-422 (424)
20 COG3387 SGA1 Glucoamylase and 94.0 0.52 1.1E-05 53.3 12.2 158 320-499 416-607 (612)
21 TIGR01535 glucan_glucosid gluc 93.5 0.56 1.2E-05 53.4 11.3 103 324-426 406-517 (648)
22 COG3459 Cellobiose phosphoryla 89.6 1.6 3.4E-05 51.0 9.3 108 320-437 757-865 (1056)
23 KOG2119 Predicted bile acid be 87.9 2.3 5.1E-05 48.1 8.9 55 323-380 627-681 (879)
24 COG3538 Uncharacterized conser 86.4 48 0.001 35.1 16.9 254 210-496 128-422 (434)
25 PLN03005 beta-fructofuranosida 80.5 40 0.00086 37.3 14.1 158 221-426 208-406 (550)
26 PLN02973 beta-fructofuranosida 79.9 45 0.00098 37.0 14.2 33 221-255 229-261 (571)
27 cd00249 AGE AGE domain; N-acyl 65.0 1.1E+02 0.0025 31.7 13.1 41 332-376 247-287 (384)
28 PF00723 Glyco_hydro_15: Glyco 55.9 63 0.0014 35.0 9.4 53 323-376 187-245 (448)
29 PLN02703 beta-fructofuranosida 54.2 3.7E+02 0.008 30.4 15.4 36 221-256 261-298 (618)
30 PF03475 3-alpha: 3-alpha doma 53.5 25 0.00054 25.8 4.1 40 320-359 5-44 (47)
31 PF12899 Glyco_hydro_100: Alka 47.8 2.5E+02 0.0055 30.5 11.9 30 397-428 291-320 (436)
32 COG3537 Putative alpha-1,2-man 43.0 28 0.0006 39.6 4.1 37 331-372 491-527 (768)
33 PRK11097 endo-1,4-D-glucanase; 42.2 2.7E+02 0.0059 29.8 11.3 130 330-499 185-316 (376)
34 PF13374 TPR_10: Tetratricopep 40.5 65 0.0014 21.6 4.4 33 328-360 3-35 (42)
35 PF07971 Glyco_hydro_92: Glyco 39.7 13 0.00027 41.4 0.9 42 329-375 243-284 (502)
36 PF03632 Glyco_hydro_65m: Glyc 37.0 84 0.0018 33.6 6.5 38 221-258 109-147 (370)
37 cd00249 AGE AGE domain; N-acyl 33.5 92 0.002 32.5 6.2 46 332-381 310-355 (384)
38 PF13202 EF-hand_5: EF hand; P 32.4 25 0.00054 22.3 1.0 24 101-124 2-25 (25)
39 PF13181 TPR_8: Tetratricopept 29.1 1.4E+02 0.0031 19.1 4.5 30 328-357 2-31 (34)
40 PF08760 DUF1793: Domain of un 29.0 1.3E+02 0.0028 28.7 5.6 45 331-376 4-48 (171)
41 PF14716 HHH_8: Helix-hairpin- 28.8 1.4E+02 0.0029 23.6 5.0 36 323-358 1-37 (68)
42 COG1331 Highly conserved prote 28.0 2.1E+02 0.0046 32.9 8.0 31 347-378 487-517 (667)
43 PF13176 TPR_7: Tetratricopept 27.9 1.3E+02 0.0029 20.2 4.2 30 330-359 2-31 (36)
44 PF09061 Stirrup: Stirrup; In 26.4 1.1E+02 0.0023 24.5 3.8 27 219-246 52-78 (79)
45 COG0124 HisS Histidyl-tRNA syn 23.9 82 0.0018 34.3 3.8 44 455-498 272-328 (429)
46 PF00036 EF-hand_1: EF hand; 23.1 58 0.0012 21.4 1.5 28 99-126 1-28 (29)
47 cd02029 PRK_like Phosphoribulo 22.1 59 0.0013 33.3 2.1 104 76-203 133-260 (277)
48 PF07221 GlcNAc_2-epim: N-acyl 21.2 1.2E+02 0.0025 31.5 4.2 43 331-378 88-130 (346)
49 PF13424 TPR_12: Tetratricopep 20.8 2.3E+02 0.0049 21.9 5.0 36 324-359 43-78 (78)
50 PF12652 CotJB: CotJB protein; 20.5 75 0.0016 26.3 2.0 69 72-147 2-74 (78)
51 PRK15453 phosphoribulokinase; 20.1 88 0.0019 32.3 2.9 17 187-203 250-266 (290)
No 1
>PLN02567 alpha,alpha-trehalase
Probab=100.00 E-value=6.9e-125 Score=1022.49 Aligned_cols=450 Identities=63% Similarity=1.081 Sum_probs=419.9
Q ss_pred CCCCCCchhhHHhhchhHHhhhhcCCC-CCCCcCCCCCCCCHHHHHHHHhcCCccC-CCCCChHHHHHHHHhhcCCCCCC
Q 041103 57 VVPTTPLVTFLERVQEIALATFGKKDF-DPKLYVDLSLKSGLSTTVTAFHKLPRNA-SESVSAPDFKEFLHEYFDGAGDD 134 (516)
Q Consensus 57 ~~~~~~~~~~~~~~~g~ll~~vq~~~f-DsKtFvD~~~k~~~~~il~~f~~l~~~~-~~~~~~~~l~~Fv~~~F~~~g~e 134 (516)
+.+++++.+||+||||++|++||+++| ||||||||+||++|++||++|++++... ++++++++|++||++||+.||.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~v~~~~f~DsKtfvD~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~l~~Fv~~~F~~~g~~ 80 (554)
T PLN02567 1 VVPTTPLLTFLVRVQSTALASFGGEDTFDPKLYVDLPLKFSLSETEKAFDALPRSNINGSVPVEELEEFVAEYFDVAGSD 80 (554)
T ss_pred CCCccchHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCCHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCCcc
Confidence 357899999999999999999999998 9999999999999999999999998655 56789999999999999999999
Q ss_pred cccCCCCCCCCCCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeeccccc
Q 041103 135 LVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYW 214 (516)
Q Consensus 135 l~~~~p~d~~~~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYf 214 (516)
|+.|+|+||+++|+.||++|+|+++|+||++||+||+.|+|+++++|.++|+++||||||||||||||||||+|||||||
T Consensus 81 l~~~~~~d~~~~p~~~l~~i~~~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~sli~lp~p~iVPGgRFrE~yyWDSy~ 160 (554)
T PLN02567 81 LLPYTPPDFVPEPPGFLPKVENPEAREWALKVHSLWKNLARKVSDSVEERPDRHTLLPLPNPVVVPGSRFREVYYWDSYW 160 (554)
T ss_pred cccCCccccccCcHhHhhhcCChHHHHHHHHHHHHHHHhccccCcccccCCCcCCcccCCCCeEccCCCcCccchHHHHH
Confidence 99999999999997799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc----------------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 041103 215 VI----------------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWN 254 (516)
Q Consensus 215 i~----------------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~ 254 (516)
|+ ||||||++||.+||++|+|++||++++|+|+|||+|||
T Consensus 161 i~~GLl~s~~~~~A~~mi~Nf~~~i~~~GfIPNg~R~Yyl~RSQPPlla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~ 240 (554)
T PLN02567 161 VIRGLLASKMYETAKGVVENLLYLVDTYGFVPNGARAYYTNRSQPPLLSAMVLAVYAATKDVELVRRALPALLKEHAFWT 240 (554)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCcCCCCCcccccCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999999999999
Q ss_pred hcCccccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc----------------------cCCCCCCcc
Q 041103 255 SRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK----------------------ENTSDFTTL 312 (516)
Q Consensus 255 ~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek----------------------~d~~~l~si 312 (516)
++|+.|.+.+.+|..++|+||++...+|||||||+|+++|.+.++..++ +++.+|++|
T Consensus 241 ~~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~a~~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti 320 (554)
T PLN02567 241 SGRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTL 320 (554)
T ss_pred cCCcceeeecCCCCcCCCcccccCCCCCCCccccccHHHHhcCCCchHHHHHHHHHHHHHHcCCCchhhhcccccccccc
Confidence 9988777777778878899999999999999999999998776442221 355668899
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCccc-chhhhhcc
Q 041103 313 AITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSS-QECRRWKA 391 (516)
Q Consensus 313 ~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~-~~~y~~~~ 391 (516)
+|++|+|||||||||+++++||+|++++|+.+++++|+++|++|+++|+++|||+++|+|+|||+++++.+ ..++.|+.
T Consensus 321 ~t~~i~pVDLNa~L~~~e~~LA~la~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~~~~~~ 400 (554)
T PLN02567 321 RTTSILPVDLNAFLLKMELDIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQESYTWDA 400 (554)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeeccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987532 23456666
Q ss_pred cCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhh-------------------------
Q 041103 392 SNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ------------------------- 446 (516)
Q Consensus 392 ~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ------------------------- 446 (516)
..+++.+++|+|+|||+|++++++.++.+++++|++++++.+||||||+.+||||
T Consensus 401 ~~~~~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~~~l~~pgGiptsl~~sg~qWdgPn~W~pl~~l~i~GL~~yG~~e 480 (554)
T PLN02567 401 ENQNTNVYASNFVPLWCGVVPPGDAKVEKVVESLKSSGLVLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKE 480 (554)
T ss_pred cccccCccHHHHHHHHcCCCChhhHHHHHHHHHHHhccCccCCcccCCCCCccccCCCCCcCHhHHHHHHHHHHHcCChH
Confidence 6778899999999999999998666789999999888888999999999999998
Q ss_pred --------------HHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHcCCCCCCCCCC
Q 041103 447 --------------CNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWPEDLKIGC 506 (516)
Q Consensus 447 --------------~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~~~~~~~c 506 (516)
+|+.+|.++|.|+|||||.+++..||||||++|+||||||||+|+|+++||++.+++|+|
T Consensus 481 a~~lA~~la~rwl~~~~~~~~~tg~m~EkYd~~~~~~~GgGGey~~q~GFGWTngV~L~ll~~yg~~~~~~~~~ 554 (554)
T PLN02567 481 GKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEFGWPEDKKLDC 554 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCccccCCCCCCCCCCCcChHHHHHHHHHHHhCCcccCCCCC
Confidence 577889999999999999999889999999999999999999999999999999999999
No 2
>PRK13272 treA trehalase; Provisional
Probab=100.00 E-value=2.5e-109 Score=889.85 Aligned_cols=389 Identities=28% Similarity=0.470 Sum_probs=348.5
Q ss_pred HHhhchhHHhhhhcCC-C-CCCCcCCCCCCCCHHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccCCCCCCC
Q 041103 67 LERVQEIALATFGKKD-F-DPKLYVDLSLKSGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYAEPPDFV 144 (516)
Q Consensus 67 ~~~~~g~ll~~vq~~~-f-DsKtFvD~~~k~~~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~~p~d~~ 144 (516)
.+||+|+||++||+++ | ||||||||++|++|++||++|++++. .++++|++||++||..||.|++.+.
T Consensus 45 p~~~~g~Ll~~Vq~a~lf~DsKtFvD~~~~~~p~~il~~~~~~~~-----~~~~~l~~Fv~~~F~~~~~e~~~~~----- 114 (542)
T PRK13272 45 PDLAYPELFQAVQEGELFDDQKHFVDALPLRDPALINADYLAQHE-----HPGFDLRKFVDANFEESPPVQTDAI----- 114 (542)
T ss_pred hhhhhhHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHhccC-----CcHHHHHHHHHHhCCCCCccccccC-----
Confidence 5799999999999999 9 99999999999999999999998753 6899999999999999999987532
Q ss_pred CCCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeeccccccc--------
Q 041103 145 PEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI-------- 216 (516)
Q Consensus 145 ~~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYfi~-------- 216 (516)
++|+.+| .+||+||+.|+|+++. +|+.+||||||||||||||||||+|||||||||
T Consensus 115 ---------~~d~~~~---~~i~~lW~~L~R~~~~----~~~~~Sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~ 178 (542)
T PRK13272 115 ---------RQDTALR---EHIDALWPKLVRSQEQ----VPAHSSLLALPHPYVVPGGRFREVYYWDSYFTMLGLVKSGQ 178 (542)
T ss_pred ---------CCCHHHH---HHHHHHHHHhccccCC----CCCcCccccCCCCeeecCCCccchhhhHHHHHHHhhhhcCc
Confidence 2466777 5999999999999854 689999999999999999999999999999999
Q ss_pred --------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCcccc---
Q 041103 217 --------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVN--- 261 (516)
Q Consensus 217 --------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~--- 261 (516)
||||||+.||.+|+++|+|..+ ++++|.|+|||+|||++++.+.
T Consensus 179 ~~~a~~mi~Nf~~~i~~yGfIPNG~R~YYl~RSQPP~l~~Mv~~~~~~t~d~~~-~~~lp~l~kEy~~Wm~~~~~~~~~~ 257 (542)
T PRK13272 179 TTLSRQMLDNFAYLIDTYGHIPNGNRTYYLSRSQPPFFSYMVELQAGVEGDAAY-QRYLPQLQKEYAYWMQGSDDLQPGQ 257 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCCchhccccCCCchhHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHcCCCCCCCCcc
Confidence 9999999999999999999875 7999999999999999974210
Q ss_pred -----ccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc---------------------cCCCCCCccccc
Q 041103 262 -----VQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK---------------------ENTSDFTTLAIT 315 (516)
Q Consensus 262 -----~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek---------------------~d~~~l~si~t~ 315 (516)
+.-.+| +.|+|||+..++||||||++|+++|......+.+ .++.+|++|+|+
T Consensus 258 ~~~~~v~~~~g--~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~Y~~l~a~aESGWDfSsRw~~~~~~L~~i~t~ 335 (542)
T PRK13272 258 AARHVVRLADG--SLLNRYWDERDTPRPEAWLHDTRTAAEAKDRPAAEVYRDLRAGAESGWDYSSRWLADGKTLASIRTT 335 (542)
T ss_pred ccceeEecCCC--cchhhhcCCCCCCCChHHHHHHHHhcCcccCcHHHHHHHHHHHHhcCCCchhhhccccccccccCcc
Confidence 111345 4799999999999999999999998775332211 355677899999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCC
Q 041103 316 SILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQN 395 (516)
Q Consensus 316 ~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~ 395 (516)
+|+|||||||||++|++||++++++|+.+++++|+++|++|+++|+++|||+ .|+|+|||+++++ ++
T Consensus 336 ~IvpVDLNalL~~~e~~LA~~~~~lG~~~~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~------------~~ 402 (542)
T PRK13272 336 AIVPVDLNSLLYHLERTLAQACASSGLAACSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRT------------LS 402 (542)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCC------------cc
Confidence 9999999999999999999999999999999999999999999999999998 8999999999976 67
Q ss_pred CccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhh-----------------------------
Q 041103 396 NNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ----------------------------- 446 (516)
Q Consensus 396 ~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ----------------------------- 446 (516)
..+++++|+|||+|++++ ++++++++.|+. +++.+||||||+.+||||
T Consensus 403 ~~~s~a~f~PLwag~a~~--~~a~~l~~~l~~-~~l~~gGlpTt~~~sgqQWD~PN~WaPlq~i~i~GL~~yG~~~lA~~ 479 (542)
T PRK13272 403 EQVTAAALYPLFAGLASD--DRAKRTADSVRA-QLLRPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGEDALART 479 (542)
T ss_pred ccccHHHHHHHHcCCCCH--HHHHHHHHHHHH-hccCCCCcCCCCCCccccCCCCCccHhHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999999996 568888988864 677899999999999999
Q ss_pred -------HHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHcCCCC
Q 041103 447 -------CNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWPE 500 (516)
Q Consensus 447 -------~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~~ 500 (516)
+++++|+++|+|+|||||+..+..|+||||++|+||||||||+|+||++||+..
T Consensus 480 La~rwl~~~~~~~~~~g~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNgV~L~lL~~yg~~~ 540 (542)
T PRK13272 480 IGERFLAQVQALFAREHKLVEKYGLDGNAAGGGGGEYALQDGFGWTNGVTLMLLNLYPPGG 540 (542)
T ss_pred HHHHHHHHHHHHHhhcCceeEEeecCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhcccc
Confidence 678899999999999999877777889999999999999999999999999864
No 3
>PRK13271 treA trehalase; Provisional
Probab=100.00 E-value=9.3e-109 Score=892.16 Aligned_cols=387 Identities=31% Similarity=0.525 Sum_probs=347.6
Q ss_pred HHhhchhHHhhhhcCC-C-CCCCcCCCCCCCCHHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccCCCCCCC
Q 041103 67 LERVQEIALATFGKKD-F-DPKLYVDLSLKSGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYAEPPDFV 144 (516)
Q Consensus 67 ~~~~~g~ll~~vq~~~-f-DsKtFvD~~~k~~~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~~p~d~~ 144 (516)
.++|+|+||++||+++ | ||||||||+||.+|++||++|+..+. .++++|++||++||..|+ |++.|+|+|+
T Consensus 44 ~~~~~g~Ll~~Vq~a~~f~DsKtFvD~~~~~~p~~il~~f~~~~~-----~~~~~l~~Fv~~~F~~p~-e~~~~~~~~~- 116 (569)
T PRK13271 44 PDILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQN-----QSGFDLRHFVNVNFTLPK-EGEKYVPPEG- 116 (569)
T ss_pred hhhhhhHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHhccC-----CCHHHHHHHHHHhCCCCc-cccccCCCcc-
Confidence 5699999999999999 9 99999999999999999999976532 688999999999999996 7888887763
Q ss_pred CCCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeeccccccc--------
Q 041103 145 PEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI-------- 216 (516)
Q Consensus 145 ~~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYfi~-------- 216 (516)
+.++.+||.||+.|+|+++++ ++++||||||||||||||||||+|||||||||
T Consensus 117 ---------------~~~~~~i~~lW~~L~R~~~~~----~~~~sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~ 177 (569)
T PRK13271 117 ---------------QSLREHIDGLWPVLTRSTENT----EKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGH 177 (569)
T ss_pred ---------------HHHHHHHHHHHHHhcCcCCCC----CCCCceecCCCCeEecCCCcchhhhhHHHHHHHhhHhcCC
Confidence 234579999999999998765 46899999999999999999999999999999
Q ss_pred --------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCc------
Q 041103 217 --------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIH------ 258 (516)
Q Consensus 217 --------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~------ 258 (516)
||||||+.||.+|+++++| +||++++|.|+|||+|||++++
T Consensus 178 ~~~a~~mi~Nf~~~i~~yG~IPNg~R~YYl~RSQPP~l~~Mv~~~~~~~~~-~~l~~~lp~l~kEy~~Wm~~~~~~~~~~ 256 (569)
T PRK13271 178 WDKVADMVANFAHEIDTWGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGD-AALKQYLPQMQKEYAYWMEGVENLQPGQ 256 (569)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCCchhhcccCCCChhHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence 9999999999999999987 6999999999999999999843
Q ss_pred ----cccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc---------------------cCCCCCCccc
Q 041103 259 ----KVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK---------------------ENTSDFTTLA 313 (516)
Q Consensus 259 ----~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek---------------------~d~~~l~si~ 313 (516)
.|.+ .+| ++|+|||+..++||||||+||+++|.+....... .|+.+|++|+
T Consensus 257 ~~~r~v~~--~~~--~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~~i~ 332 (569)
T PRK13271 257 QEKRVVKL--QDG--TLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTIR 332 (569)
T ss_pred cccceEEe--CCC--CcccccccCCCCCCCCcHHHHHHHHhhCCcchHHHHHHHHHHHhhcCCcchhhhccCCccccccc
Confidence 2333 244 5799999999999999999999998876332111 4667789999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccC
Q 041103 314 ITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASN 393 (516)
Q Consensus 314 t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~ 393 (516)
|++|+|||||||||+++++||+|++++|+.+++++|+++|++++++|+++|||++.|+|+|||+++++
T Consensus 333 t~~IiPVDLNALLy~ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~------------ 400 (569)
T PRK13271 333 TTSIVPVDLNALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK------------ 400 (569)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhh---------------------------
Q 041103 394 QNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ--------------------------- 446 (516)
Q Consensus 394 ~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ--------------------------- 446 (516)
+++.+++++|+|||+|++++ +++++|++.++ ++++.+|||+|++.+||||
T Consensus 401 ~r~~~saa~f~PLwag~a~~--~qA~~Vv~~l~-~~Ll~pgGLpTt~~~SgqQWD~PngWaPlq~iiieGL~~yG~~~lA 477 (569)
T PRK13271 401 VRNQLTAAALFPLYVNAAAK--DRANKVAAATK-THLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVA 477 (569)
T ss_pred EeechhHHHHHhhhcCCCCH--HHHHHHHHHHH-HhcCCCCCccCCCCCCCCCCcCcccCHhHHHHHHHHHHHcCCHHHH
Confidence 56779999999999999985 57888988875 4788999999999999998
Q ss_pred ---------HHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHcCCC
Q 041103 447 ---------CNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWP 499 (516)
Q Consensus 447 ---------~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~ 499 (516)
+|+++|+++|+|+|||||+..|..||||||++|+||||||||+|+||+.|+..
T Consensus 478 ~~la~rwl~~~~~~~~~~g~m~EKYd~~~~G~~gGGGeY~~q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 478 MDVTWRFLTNVQHTYDREKKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred HHHHHHHHHHHHHHhcccCceEEeeCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhcCcc
Confidence 67889999999999999987777899999999999999999999999999875
No 4
>PRK13270 treF trehalase; Provisional
Probab=100.00 E-value=1.4e-108 Score=886.49 Aligned_cols=387 Identities=28% Similarity=0.487 Sum_probs=345.4
Q ss_pred HHhhchhHHhhhhcCC-C-CCCCcCCCCCCCCHHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccCCCCCCC
Q 041103 67 LERVQEIALATFGKKD-F-DPKLYVDLSLKSGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYAEPPDFV 144 (516)
Q Consensus 67 ~~~~~g~ll~~vq~~~-f-DsKtFvD~~~k~~~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~~p~d~~ 144 (516)
.++|.|+||++||+++ | ||||||||+||.+|++||++|++++. .++++|++||++||..|+. +|+||+
T Consensus 55 ~~~~~g~Ll~~Vq~~~lf~DsKtfvD~~~~~~p~~il~~f~~~~~-----~~~~~l~~Fv~~~F~~p~~-----~~~~~~ 124 (549)
T PRK13270 55 PADRYLELFEHVQSSKIFPDSKTFPDCAPKMDPLDILIRYRKVRR-----HRDFDLRKFVENHFWLPEV-----YSSEYV 124 (549)
T ss_pred chhhhHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHccc-----CCHHHHHHHHHHhCCCCCC-----Cccccc
Confidence 4699999999999999 9 99999999999999999999999963 5789999999999998863 467898
Q ss_pred CCCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeeccccccc--------
Q 041103 145 PEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI-------- 216 (516)
Q Consensus 145 ~~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYfi~-------- 216 (516)
++|. .+|+.+||.||+.|+|++++ +|+++||||||||||||||||||+|||||||||
T Consensus 125 ~~p~-----------~~~~~~i~~lW~~L~R~~~~----~~~~~Sli~lp~p~iVPGGRFrE~YYWDSYwi~~GLl~sg~ 189 (549)
T PRK13270 125 SDPQ-----------NSLKEHIDQLWPVLTREPQD----HIPWSSLLALPQSYIVPGGRFSETYYWDSYFTMLGLAESGR 189 (549)
T ss_pred cCHH-----------HHHHHHHHHHhHHhcccccC----CCCcCccccCCCCeEecCCCcccchhhhHHHHHHHhhhcCc
Confidence 8883 28999999999999999864 589999999999999999999999999999999
Q ss_pred --------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCcccc---
Q 041103 217 --------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVN--- 261 (516)
Q Consensus 217 --------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~--- 261 (516)
||||||++||..|++ .|.+++++++|.|+|||+|||++++.+.
T Consensus 190 ~~~a~~mi~Nf~~li~~yGfIPNG~R~YYl~RSQPP~l~~Mv~~y~~--~~~~~~~~~lp~l~~E~~fWm~~~~~~~~~~ 267 (549)
T PRK13270 190 EDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEE--DGVRGARRYLDHLKMEYAFWMDGAESLIPNQ 267 (549)
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCCchhccccCCCCHhHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHcCCCCccCccc
Confidence 999999999987765 4678999999999999999999875210
Q ss_pred -----ccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc---------------------cCCCCCCccccc
Q 041103 262 -----VQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK---------------------ENTSDFTTLAIT 315 (516)
Q Consensus 262 -----~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek---------------------~d~~~l~si~t~ 315 (516)
|.-.+|. +|+|||+..++|||||||+|+++|.... .+.+ .|+++|++|+|+
T Consensus 268 ~~~~~v~~~~g~--~L~rY~~~~~~PRpEsyreD~~~a~~~~-rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~ 344 (549)
T PRK13270 268 AYRHVVRMPDGS--LLNRYWDDRDTPRDESWLEDVETAKHSG-RPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTT 344 (549)
T ss_pred ccceeEecCCCC--ccccccCCCCCCCCchhHHHHHhhcccC-CchHHHHHHHHHHHHcCCCchhhcccCCccccccccc
Confidence 1113554 7999999999999999999999987642 1111 355668889999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCC
Q 041103 316 SILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQN 395 (516)
Q Consensus 316 ~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~ 395 (516)
+|+|||||||||++|++||+|++++|+.+++++|+++|++|++||+++|||++.|+|+|||+++++ +
T Consensus 345 ~iipVDLNaiL~~~e~~LA~~a~~lG~~~~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~------------~- 411 (549)
T PRK13270 345 QFIPIDLNAFLYKLESAIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ------------L- 411 (549)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc------------c-
Confidence 999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred CccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhh-----------------------------
Q 041103 396 NNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ----------------------------- 446 (516)
Q Consensus 396 ~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ----------------------------- 446 (516)
+.+++++|+|||+|++++ ++++++++.|+. +++.+|||+||+.+||||
T Consensus 412 ~~~s~a~f~PLwaG~a~~--~qa~~l~~~l~~-~ll~pGGl~tS~~~sgqQWD~PN~WaPlqwmiieGL~ryG~~~lA~~ 488 (549)
T PRK13270 412 ALFSAAAIVPLYVGMANH--EQADRLANAVRS-RLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDE 488 (549)
T ss_pred ccccHHHHHHHHhCCCCH--HHHHHHHHHHHH-hcccCCCcCCCCCCCcccCCCCCCCccHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999996 468889999874 778899999999999998
Q ss_pred -------HHHHHHHHhCccccccccccc-ccCCCCCccCCCCCccccHHHHHHHHHHcCCC
Q 041103 447 -------CNYVAYKETGAMHEKYDVEKC-RDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWP 499 (516)
Q Consensus 447 -------~n~~~y~~tG~m~EKYdv~~~-g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~ 499 (516)
+|+++|+++|+|+|||||+++ +..||||||++|+||||||||+|+||++||+.
T Consensus 489 LA~rwl~~~~~~~~~~g~m~EKYdv~~~~g~~GgGGEY~~q~GFGWTNGV~l~~l~~yg~~ 549 (549)
T PRK13270 489 IARSWLKTVNQFYQEHHKLIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549 (549)
T ss_pred HHHHHHHHHHHHHhhcCeeEEEecCCCCCCCCCCCCCcCCCCCcCcHHHHHHHHHHHhCCC
Confidence 678899999999999999875 56788999999999999999999999999974
No 5
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=100.00 E-value=3.9e-108 Score=890.00 Aligned_cols=401 Identities=40% Similarity=0.761 Sum_probs=293.5
Q ss_pred C-CCCCcCCCCCCCCHHHHHHHHhcCCccC-CCCCChHHHHHHHHhhcCCCCCCcccCCCCCCCCCCCCcCCCCCChhHH
Q 041103 83 F-DPKLYVDLSLKSGLSTTVTAFHKLPRNA-SESVSAPDFKEFLHEYFDGAGDDLVYAEPPDFVPEPDGFLPKVKNPQVR 160 (516)
Q Consensus 83 f-DsKtFvD~~~k~~~~~il~~f~~l~~~~-~~~~~~~~l~~Fv~~~F~~~g~el~~~~p~d~~~~p~~~l~~i~d~~~r 160 (516)
| ||||||||++|.+|++|+++|++++..+ +..+++++|++||++||..+|.|++.|+|+||+++|+.||++|.|+++|
T Consensus 3 f~d~k~fvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fv~~~f~~~G~el~~~~~~d~~~~~~~~~~~i~~~~~~ 82 (512)
T PF01204_consen 3 FPDSKTFVDMPMKNDPDEILAAFKKLFWNTLTRNISKFDLKQFVEDHFDEPGSELEPWTPPDWKEDPPYFLSRISDPELR 82 (512)
T ss_dssp SSSTHHHHT-EESS-HHHHHHHHHHHHTS------TT--HHHHHHHHEE------------S------------TT--HH
T ss_pred CCCCCeeeCCCCCCCHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhCcCccccccccCCcccCCCCccccccCCCchhh
Confidence 8 9999999999999999999999998653 4567999999999999999999999999999999996699999999999
Q ss_pred HHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeeccccccc------------------------
Q 041103 161 AWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWVI------------------------ 216 (516)
Q Consensus 161 ~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYfi~------------------------ 216 (516)
+||.+||++|+.|+|+++++|.++|+++|||||||||||||||||||||||||||+
T Consensus 83 ~~~~~l~~~W~~l~r~~~~~~~~~~~~~sli~lp~p~iVPGGRF~E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i~ 162 (512)
T PF01204_consen 83 KWAQHLHQLWKDLGRKIKPDVKDNPERYSLIPLPNPYIVPGGRFREMYYWDSYFIILGLLASGMYETAKGMIENFLYLID 162 (512)
T ss_dssp ---HHHHHHTTTTEE------SS--TT-SB---SS-EE--BTTB-S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCchheeeccCCccccccccccccCCCCeEeeCCCcccchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCccccccCCCCCeeeeEeeecCC
Q 041103 217 ----------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNS-RIHKVNVQDDQGGNHTLSRYYAMW 279 (516)
Q Consensus 217 ----------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~-~R~~v~~~~~~G~~~~L~rY~~~~ 279 (516)
||||||++||.+||++|+|++||++++|+|+|||+|||+ +|. +.+. ..+..+.|+||++++
T Consensus 163 ~yGfipNg~R~Yyl~RSQPPlla~mV~~~y~~t~d~~~l~~~lp~L~ke~~fW~~~~r~-~~~~-~~~~~~~l~ry~~~~ 240 (512)
T PF01204_consen 163 RYGFIPNGNRTYYLNRSQPPLLAQMVREYYEATKDKAFLREALPALEKEYEFWMDNNRD-VRVT-GLGKGYGLNRYGDPW 240 (512)
T ss_dssp HHSS--SBSBGGGTT---S--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCCEEE-TTEE-EECTSEECCHHHHCH
T ss_pred HhCcCCCCccHHhccCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCCCcc-eeec-CCCccCCcccccCCC
Confidence 999999999999999999999999999999999999994 555 4432 233568999999999
Q ss_pred CCCCCCCcchhhhhhcccCCcccc----------------------cC-C---CCCCccccccccchhHHHHHHHHHHHH
Q 041103 280 NKPRPESSTIDKAHSSKLLNASDK----------------------EN-T---SDFTTLAITSILPIDLNIFILKMELDI 333 (516)
Q Consensus 280 ~~PRPESyreD~~~A~~~~~~~ek----------------------~d-~---~~l~si~t~~iiPVDLNAlLy~~e~~L 333 (516)
++||||||++|.++|....+..++ ++ + ..+.+++|++|+||||||+||+++++|
T Consensus 241 ~~prpEsy~eD~~~a~~~~~~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~l~~~~t~~iipVDLNa~L~~~e~~L 320 (512)
T PF01204_consen 241 NSPRPESYREDVETAENFPSERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSNLFTIRTTDIIPVDLNAILYRNEKDL 320 (512)
T ss_dssp HCT-CCCCCHHHHHHHCHCHTSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-TCHHCECCCEE-HHHHHHHHHHHHHH
T ss_pred CCCcchHHHhhHHHHHhhcccchHHHHhhcccchhhhhhhccceeeecCCCchhhhhccceeeecCchHHHHHHHHHHHH
Confidence 999999999999998876411111 22 2 347789999999999999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCC
Q 041103 334 ASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNS 413 (516)
Q Consensus 334 A~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~ 413 (516)
|+||+++|+.++|+.|+++|++|+++|+++|||+++|+|||||+++++ +++.+++++|+|||+|++++
T Consensus 321 A~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~------------~~~~~~~a~f~PL~ag~a~~ 388 (512)
T PF01204_consen 321 AEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGK------------RSPVFSPANFLPLWAGIASP 388 (512)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTE------------EGG--BGGGGHHHHTT-S-H
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCC------------CcccccHHHHHHHHHhhcCH
Confidence 999999999999999999999999999999999999999999999875 67789999999999999996
Q ss_pred ch--HHHHHHHhhhhhcCCcc-cceeeeccCCChhh------------------------------------HHHHHHHH
Q 041103 414 DT--CIVEKVRKGFQSSGLLG-AAGIATSLTRSGEQ------------------------------------CNYVAYKE 454 (516)
Q Consensus 414 ~~--~~a~~vl~~L~~~~ll~-~gGIpTsl~~sgqQ------------------------------------~n~~~y~~ 454 (516)
++ ..+.++++.++..+++. +||+++|+..+||| +|+++|++
T Consensus 389 ~qa~~~~~~~l~~~~~~~~l~~~~g~~ts~~~~~~qWD~Pn~WaPlq~~~i~GL~~yG~~~lA~~la~rwl~~~~~~~~~ 468 (512)
T PF01204_consen 389 EQAERLVARALDYLERSGLLTFPGGIPTSLYDTGQQWDGPNVWAPLQWMAIEGLRRYGYRELARRLAQRWLRLNYKVFKR 468 (512)
T ss_dssp HHHHHHHHHHHHHCTTCCSSC-CSECTTCTTTTTSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCC
T ss_pred hhhhhHHHHHHHHHHhcCCcccCCCCCCccccccccCCCCCccHhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 43 13466777787777775 99999999999998 56778888
Q ss_pred hCcccccccccccccCC-CCCccCCCCCccccHHHHHHHHHHcC
Q 041103 455 TGAMHEKYDVEKCRDIG-GGGEYIPQTGFSWSNGAVLAFLEEFG 497 (516)
Q Consensus 455 tG~m~EKYdv~~~g~~G-gGGEY~~Q~GFGWTNGV~L~ll~~yg 497 (516)
+|.|||||||++++..| +||||++|+||||||||+|+||.+||
T Consensus 469 ~g~m~EKYd~~~~~~~gg~gGeY~~q~GFGWTNgv~l~~l~~yg 512 (512)
T PF01204_consen 469 TGKMFEKYDVEDGGEPGGGGGEYPVQDGFGWTNGVYLDLLDKYG 512 (512)
T ss_dssp CSSEBSEEETTTTSCEC-S-SSS---BS-HHHHHHHHHHHHHH-
T ss_pred cCchhccccceeccccCCCCCcccCCCCCccHHHHHHHHHHhhC
Confidence 99999999999877765 89999999999999999999999997
No 6
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-100 Score=812.99 Aligned_cols=426 Identities=36% Similarity=0.668 Sum_probs=391.8
Q ss_pred CCchhhHHhhchhHHhhhhcCC-C-CCCCcCCCCCCCC--HHHHHHHHhcCCc-cCCCCCChHHHHHHHHhhcCCCCCCc
Q 041103 61 TPLVTFLERVQEIALATFGKKD-F-DPKLYVDLSLKSG--LSTTVTAFHKLPR-NASESVSAPDFKEFLHEYFDGAGDDL 135 (516)
Q Consensus 61 ~~~~~~~~~~~g~ll~~vq~~~-f-DsKtFvD~~~k~~--~~~il~~f~~l~~-~~~~~~~~~~l~~Fv~~~F~~~g~el 135 (516)
.+...-.+||.|.+|++||.++ | |+|+||||+++.+ +..++++|+++.. ..+.+++.+.|++||++||+.||.++
T Consensus 36 ~~~~~~~iyc~~~lL~~~~~~k~~~d~k~fvd~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fv~e~fd~pg~el 115 (600)
T KOG0602|consen 36 THANFSKIYCEGNLLQSVQIAKLYPDSKIFVDEPLKNEGKPDRLLRTFDELSWSSSTRPVPSEKLQEFVTEYFDAPGKEL 115 (600)
T ss_pred ccccccceEeecccccchhhcccCCCchhhhhhhhhccCCcchHHHHHHHhhhhhccCCCCHHHHHHHHHHhccCCCccc
Confidence 4444556799999999999999 9 9999999999999 9999999999975 33667899999999999999999999
Q ss_pred ccCCCCCCCCCCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCCCCcccCCCCCcceeecccccc
Q 041103 136 VYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLPGPIVIPSSRFREVYYWDSYWV 215 (516)
Q Consensus 136 ~~~~p~d~~~~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp~pfiVPGGRFrE~YYWDSYfi 215 (516)
+.|+|.||.+.|+ |+..|.|+++|.||.+||.+|+.|+|+++.+|..+|+++|+|++|||||||||||||+||||||||
T Consensus 116 ~~~~P~d~~~~p~-~~~~i~~~~~r~~a~el~~~w~~l~~~i~~~v~~~p~~~sli~v~~PfiVPGgRF~E~YyWDsywi 194 (600)
T KOG0602|consen 116 EIYAPTDWEEMPS-FLATIADSDVRRLAKELHPEWKKLYRKIAQEVRSNPDRYSLIPVPNPFIVPGGRFRELYYWDSYWI 194 (600)
T ss_pred ccccccccccCcH-HHHhhcchHHHHHHHHhhHHHHhHHHHhhHHHhhCCCcCccccCCCceeccCCceeeeecccHHHH
Confidence 9999999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----------------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 041103 216 I----------------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNS 255 (516)
Q Consensus 216 ~----------------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~ 255 (516)
| ||||+|+.||.+||++|+|.+|++++||+|.|||.||++
T Consensus 195 i~GLl~S~m~~takGmieNf~~lV~~yG~ipNg~R~YYl~RSQPPllt~Mv~~~y~~t~~~~~~~~~l~tl~kEy~fw~~ 274 (600)
T KOG0602|consen 195 IKGLLASQMFDTAKGMIENFISLVDTYGFIPNGGRVYYLNRSQPPLLTGMVYEYYEATNDEQFLKRALPTLIKEYEFWTN 274 (600)
T ss_pred HHhHHhhcccHHHHHHHHHHHHHHHhcCcccCCCeeeeeccCCCchhhhhHHHhhhccCcHHHHHHHHHHHhhheecccC
Confidence 9 999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc----------------------cCCCCCCccc
Q 041103 256 RIHKVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK----------------------ENTSDFTTLA 313 (516)
Q Consensus 256 ~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek----------------------~d~~~l~si~ 313 (516)
+|+. .+.+. |+ .|+||...+.+||||||++|.+++.+..+..++ .+.+++++++
T Consensus 275 ~~~~-~~~~~-~~--~l~~y~~~~~~prPEsy~~d~e~~e~~~t~~~~~~~~~~l~~~aesg~DfSsrw~~~~~t~~~~~ 350 (600)
T KOG0602|consen 275 NRTE-DVKDE-GK--VLSRYRVMGSGPRPESYREDFETAEHLKTEKEKQQLYQDLAAAAESGWDFSSRWFAVNGTLSSIG 350 (600)
T ss_pred CCcc-ccccC-Cc--eeEEEeccCCCCCCcchHHHHHHHhcccchHHHHHHHHHHhhcCcccchhHHHhhccCCcccccc
Confidence 9984 44432 22 699999999999999999999999887554432 3445668899
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccC
Q 041103 314 ITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASN 393 (516)
Q Consensus 314 t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~ 393 (516)
|++++|||||++++.+.++++.++...|+.++++.|+++++.|+.+|+++||||++|+|||||+..++
T Consensus 351 t~~~vpvDLN~~~~~~~~i~~y~~~~~Gd~~~s~~~~~k~~~r~~~i~~vlWde~~g~w~DYd~~~~~------------ 418 (600)
T KOG0602|consen 351 TTDLVPVDLNLLYKWNADIMKYFYVVDGDPKDSAQFEKKSEQRRAAIQEVLWDEEDGAWFDYDLELKK------------ 418 (600)
T ss_pred cccccccchHHHHHhhHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccccc------------
Confidence 99999999998888888899999999999999999999999999999999999999999999998865
Q ss_pred CCCccchhhHHHHhhcCCCC--chHHHHHHHhhhhhcCCc-ccceeeeccCCChhh------------------------
Q 041103 394 QNNNAFASNFVPIWIDLFNS--DTCIVEKVRKGFQSSGLL-GAAGIATSLTRSGEQ------------------------ 446 (516)
Q Consensus 394 ~~~~~~~s~~~PLwagia~~--~~~~a~~vl~~L~~~~ll-~~gGIpTsl~~sgqQ------------------------ 446 (516)
++..+++|||+|||+|++++ +...+++++.+|+..|.+ .|||||+|+.+||||
T Consensus 419 ~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g~~~~p~giP~Sl~~s~eQWD~Pn~WaP~q~m~~~gl~~~~~~ 498 (600)
T KOG0602|consen 419 HNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSGALTFPGGIPTSLSNSGEQWDFPNGWAPNQHMAIEGLRRAGNQ 498 (600)
T ss_pred cCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcCCcCCCCCCcccCCCchhhccCCCCCCcceehhhhhhhhcCCH
Confidence 67889999999999999994 233689999999999955 999999999999999
Q ss_pred ---------------HHHHHHHHhCcccccccccc-cccCCCCCccCCCCCccccHHHHHHHHHHcCCCCCCC
Q 041103 447 ---------------CNYVAYKETGAMHEKYDVEK-CRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWPEDLK 503 (516)
Q Consensus 447 ---------------~n~~~y~~tG~m~EKYdv~~-~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~~~~~ 503 (516)
+|+.+|..+|.|+|||||+. ++..|+||||.+|+||||||||+|++|.+||+.+...
T Consensus 499 ~~~~~A~kla~~wl~~~~~~~~~~g~~~EKY~vt~~~~~~G~ggEY~~QeGFGW~Ng~il~~L~~~g~~~~~~ 571 (600)
T KOG0602|consen 499 ELQEVALKLAQRWLETNFAVFVDSGGMFEKYDVTRDPGPHGGGGEYEVQEGFGWTNGVILDLLKKYGSDLRRG 571 (600)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCceeEeeccccCCCCCCCCCccccccCCCccchhHHHHHHHcCCccccc
Confidence 67889999999999999997 7788999999999999999999999999999999883
No 7
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-76 Score=615.47 Aligned_cols=390 Identities=31% Similarity=0.506 Sum_probs=333.8
Q ss_pred hhchhHHhhhhcCC-C-CCCCcCCCCCCCC-HHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccCCCCCCCC
Q 041103 69 RVQEIALATFGKKD-F-DPKLYVDLSLKSG-LSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYAEPPDFVP 145 (516)
Q Consensus 69 ~~~g~ll~~vq~~~-f-DsKtFvD~~~k~~-~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~~p~d~~~ 145 (516)
+..|++|++||.++ | |.|||+|..++.. |..++..+.+.+. .+...++.||..+|..+...- +.
T Consensus 56 ~~~~~lf~~v~~ak~f~~~k~f~d~~~~~e~p~~~l~~~~~~~~-----~~~~s~r~~v~~~f~~~~~~~-~y------- 122 (558)
T COG1626 56 YFYGELFQDVQDAKLFPDHKTFLDEAPSNENPVNILSRYRMEKD-----WPGFSLREFVNNSFFLPESTS-KY------- 122 (558)
T ss_pred hhhHHHHHHHHHHhhcccceecccccccccCchhHHHhhhccCC-----CccccHHHHhhhhccccccCC-cC-------
Confidence 56788888899888 9 9999999999987 9999999988764 577899999999999887642 11
Q ss_pred CCCCcCCCCCChhHHHHHHHHHHhhhccccccccccccCCCccccccCC-CCcccCCCCCcceeeccccccc--------
Q 041103 146 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSGSVLDRLEFHTLLLLP-GPIVIPSSRFREVYYWDSYWVI-------- 216 (516)
Q Consensus 146 ~p~~~l~~i~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p~~~sli~lp-~pfiVPGGRFrE~YYWDSYfi~-------- 216 (516)
+| ++..++..||+++|+.|+|++.. -|+..|||+|| .|||||||||+|+||||||||+
T Consensus 123 ~~---------~~~~~~~~~~~~~wp~L~~~~e~----~~k~~sll~lPg~pyvVPGGRF~ElYyWDsYf~~lGL~esgr 189 (558)
T COG1626 123 DP---------PEQQSLYEHIDQLWPALTREVED----LPKESSLLPLPGYPYVVPGGRFNELYYWDSYFTMLGLAESGR 189 (558)
T ss_pred Cc---------HHHHHHHHHHHhhcccceeeHhh----cCCccccccCCCCceeCCCcccccchHHHHHHHHHHHhhcCc
Confidence 22 35677788999999999998643 35667999999 5999999999999999999999
Q ss_pred --------------------------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCcccc---
Q 041103 217 --------------------------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVN--- 261 (516)
Q Consensus 217 --------------------------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~--- 261 (516)
||||+|+.||..++++.++ +++++++|.++|||.+||.+--...
T Consensus 190 ~d~a~~Mv~nF~~~Ie~yG~IpNgnRtYyLsRSQPPff~~Mv~~~~~~~g~-~~~~r~l~~~~key~~w~~~~~~l~~~~ 268 (558)
T COG1626 190 WDLAKGMVDNFAYEIETYGHIPNGNRTYYLSRSQPPFFALMVELVAEHEGV-AALKRYLPALIKEYAYWMDGVPSLQPKQ 268 (558)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCceeeEeecCCCCcHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHhccCcccCccc
Confidence 9999999999999999984 7899999999999999999522111
Q ss_pred -----ccCCCCC-eeeeEeeecCCCCCCCCCcchhhhhhcccCCcccc---------------------cCCCCCCcccc
Q 041103 262 -----VQDDQGG-NHTLSRYYAMWNKPRPESSTIDKAHSSKLLNASDK---------------------ENTSDFTTLAI 314 (516)
Q Consensus 262 -----~~~~~G~-~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~~ek---------------------~d~~~l~si~t 314 (516)
+...+|. ...|++||++..+||+|||.+|++++.+....+.. .+...|.||+|
T Consensus 269 ~~~~~~~~~dG~~pe~ln~y~dd~~tpr~Esy~~t~~~a~~~~~r~~~eiy~~dRA~reSGwD~ssRw~g~~~~LasIrt 348 (558)
T COG1626 269 GYSRVVTLGDGSPPEVLNRYWDDRDTPRQESYHETIATAKHNPERPLDEIYRDDRAGRESGWDFSSRWLGVPAPLASIRT 348 (558)
T ss_pred cceeEEecCCCCchhhhhhhhcccCCccchhhhhhHHHhhcCcCCChHhhhcchhhhHhccCcccccccCCCccccceec
Confidence 2345664 24799999999999999999999998876321110 35566889999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCC
Q 041103 315 TSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQ 394 (516)
Q Consensus 315 ~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~ 394 (516)
+.++|||||++||+++..+++++++.|+.+.++.|+++|+.|+.+|+++|||++.|+|+|||++.++ .
T Consensus 349 ~~~~p~dlna~~y~~e~~~~~~~~~~~~~~~~e~~~~~A~~R~~aI~~ylW~~e~G~~~DYd~k~~~------------~ 416 (558)
T COG1626 349 TSILPVDLNALLYKLEEIIANISAIKGDKETAERYQRKAEARRCAINKYLWDDEAGQYNDYDWKLKK------------R 416 (558)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHccccccceeehhhhhccc------------c
Confidence 9999999999999999999999999999999999999999999999999999999999999988654 5
Q ss_pred CCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhh----------------------------
Q 041103 395 NNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQ---------------------------- 446 (516)
Q Consensus 395 ~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ---------------------------- 446 (516)
+..+++++++|||+|.+++ +|++++++.+.. .|+.+|||++|...||+|
T Consensus 417 ~~y~~a~~~~plw~G~a~~--era~~~a~~~~~-~l~~pGGl~ast~~s~~QWD~PNgWaPlq~ia~~gL~ryG~~~la~ 493 (558)
T COG1626 417 RAYLSAAALWPLWVGLATP--ERAQRLADAALS-MLEQPGGLSASTPRSGQQWDYPNGWAPLQWIATQGLKRYGYDILAD 493 (558)
T ss_pred ccccchhhhhhccCCCCCH--HHHHHHHHHHHH-HhcCCCceecccccccccccCCCCCccHHHHHHHHHHHHhHHHHHH
Confidence 6779999999999999996 578888887754 788999999999999999
Q ss_pred --------HHHHHHHHhCcccccccccccc-cCCCCCccCCCCCccccHHHHHHHHHHcCCCC
Q 041103 447 --------CNYVAYKETGAMHEKYDVEKCR-DIGGGGEYIPQTGFSWSNGAVLAFLEEFGWPE 500 (516)
Q Consensus 447 --------~n~~~y~~tG~m~EKYdv~~~g-~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~~ 500 (516)
++-..|..+|++.||||+..+. ..|+||||+.|+||||||||+|.||+-||..+
T Consensus 494 ~ia~rwL~~v~~~~d~~~~~VEKydv~~~~~~~g~~geyp~q~GFGWtNgv~l~lL~~~~~~~ 556 (558)
T COG1626 494 DIARRWLTNVEQFYDYEGKLVEKYDVSRGTGPGGGGGEYPLQDGFGWTNGVVLKLLDLYGPHA 556 (558)
T ss_pred HHHHHHHHHHHHHHhhcccceeEeeecccccCCCCCcccCCcccccchhHHHHHHHHhhCccc
Confidence 2224566689999999999664 46678999999999999999999999998764
No 8
>PRK10137 alpha-glucosidase; Provisional
Probab=100.00 E-value=1.1e-38 Score=354.69 Aligned_cols=292 Identities=21% Similarity=0.330 Sum_probs=210.9
Q ss_pred ccccccCCCCcccCC-C-C-Ccc--eeeccccccc---------------------------------------------
Q 041103 187 FHTLLLLPGPIVIPS-S-R-FRE--VYYWDSYWVI--------------------------------------------- 216 (516)
Q Consensus 187 ~~sli~lp~pfiVPG-G-R-FrE--~YYWDSYfi~--------------------------------------------- 216 (516)
++..=.+-|.++||. | | |-- ++-|||.|++
T Consensus 322 r~~~g~~~~~~t~Ps~gl~Wf~~~~~W~WDS~~~A~~la~fdpelA~~~lr~Lf~~Q~~~~d~~r~~~~G~Iph~vf~~~ 401 (786)
T PRK10137 322 RSPAGAVKFNTVTPSVTARWFSGNQTWPWDTWKQAYAMAHFNPDVAKENIRAVFSWQIQPDDSVRPQDVGFVPDLIAYNL 401 (786)
T ss_pred cccccccccCceEeCCCCCCCCCCCccchHHHHHHHHHhhcCHHHHHHHHHHHHHhhccccCCCCcCCCCeeeEEeccCC
Confidence 333334567789998 3 2 777 9999999998
Q ss_pred ---------------cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecC---
Q 041103 217 ---------------SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAM--- 278 (516)
Q Consensus 217 ---------------SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~--- 278 (516)
+||||++++|.+||++++|++||++++|.|.++|+||.++|+. +.+| |..|...
T Consensus 402 ~p~R~g~~~~~ne~~tqPPL~a~av~~vy~~t~d~~fl~~lyPkL~a~h~Ww~~~RD~----dg~G----l~eY~~~~~~ 473 (786)
T PRK10137 402 SPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKAWLAEMYPKLVAYHDWWLRNRDH----NGNG----VPEYGATRDK 473 (786)
T ss_pred CcccccccccccCCCcCcCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCC----CCCc----eeEeeccccc
Confidence 8999999999999999999999999999999999999999985 4455 4555322
Q ss_pred -------------------------------------------------CCCCCCCCcchhhhhhcccCCccc-----c-
Q 041103 279 -------------------------------------------------WNKPRPESSTIDKAHSSKLLNASD-----K- 303 (516)
Q Consensus 279 -------------------------------------------------~~~PRPESyreD~~~A~~~~~~~e-----k- 303 (516)
|.+.+..|-+.|......++...+ .
T Consensus 474 ~h~~~~g~~~~~i~~~~~~~~~~G~~n~~~~~~~~~~~~~~~~~~~~~~WESGmDNap~f~~i~~~~~~~y~r~~y~r~~ 553 (786)
T PRK10137 474 AHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSD 553 (786)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCCCccccccccccccchhhhccccccc
Confidence 112222221212100000000000 0
Q ss_pred ------cCCCCCCcccccccc--chhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEee
Q 041103 304 ------ENTSDFTTLAITSIL--PIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDY 375 (516)
Q Consensus 304 ------~d~~~l~si~t~~ii--PVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dy 375 (516)
++..+..++...+|. +|||||+||++++.||+||+++|+.++|++|+++|++++++|+++|||++.|+|+||
T Consensus 554 ~~V~~~~~~~~dg~l~~~p~~~e~VDLNsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dy 633 (786)
T PRK10137 554 WTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDV 633 (786)
T ss_pred eeeeehhcccCCCCccCCCCcCCCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEE
Confidence 111122234455666 999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcC-CcccceeeeccCCC----------h
Q 041103 376 WISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSG-LLGAAGIATSLTRS----------G 444 (516)
Q Consensus 376 dl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~-ll~~gGIpTsl~~s----------g 444 (516)
++++++....+. ...-.....++++|+|||+|++++ +++++|++.|.+++ |..++||||....+ |
T Consensus 634 dL~~~~~~~~~~--g~~i~~~~~~~agf~PLwaGia~~--eqA~~VV~~L~~p~~F~t~~GipTlS~s~p~ydp~~YWRG 709 (786)
T PRK10137 634 RIEDKPLANGCA--GKPIVERGKGPEGWSPLFNGAATQ--ANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRG 709 (786)
T ss_pred ecCccccccccc--CcceeeeccCccchhhccCCCCCH--HHHHHHHHHhcChhhcCCCCCccCcCCCccccCCCCCCCC
Confidence 998543100000 000012356789999999999985 57999999998765 45788999854321 1
Q ss_pred h-----h------------------------HHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHH
Q 041103 445 E-----Q------------------------CNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEE 495 (516)
Q Consensus 445 q-----Q------------------------~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~ 495 (516)
. | .+..+|.++|.|+||||+.++.+. |+ .+||||++|+|.|.+.
T Consensus 710 pVWpp~N~Li~~GL~rYG~~e~A~~La~~ll~~a~~l~~tG~~~E~YDp~TGeg~--Ga-----~~FSWTAAvlLml~~~ 782 (786)
T PRK10137 710 RVWVDQFYFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQ--GA-----PNFSWSAAHLYMLYND 782 (786)
T ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCCccc--CC-----CCCChHHHHHHHHHHH
Confidence 1 1 234568889999999999987433 33 3699999999999987
Q ss_pred cC
Q 041103 496 FG 497 (516)
Q Consensus 496 yg 497 (516)
|.
T Consensus 783 ~~ 784 (786)
T PRK10137 783 FF 784 (786)
T ss_pred Hh
Confidence 74
No 9
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=99.94 E-value=7.1e-26 Score=256.39 Aligned_cols=250 Identities=22% Similarity=0.321 Sum_probs=187.7
Q ss_pred cCCchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCC----
Q 041103 217 SQPPILSAMVYDIYNRTG-----------DFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNK---- 281 (516)
Q Consensus 217 SQPPlla~mV~~~y~~t~-----------D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~---- 281 (516)
.+||.|.+.+..+++... +.+||+++||.|+++|+||.+... |.....+|++....+
T Consensus 461 ANPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~~l~~~yp~L~~~~~wf~~tQ~--------G~~~~~yrWrGr~~~~~~~ 532 (801)
T PF03200_consen 461 ANPPTLFLALEKLLDRLKAEKKSEDNSEEDLEFLRRIYPRLKRWYNWFNTTQA--------GDIPGSYRWRGRDPTTDRE 532 (801)
T ss_pred CCCccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhhccC--------CCCCCceeEcCCCCCcccc
Confidence 899999999999886431 568999999999999999876543 333345676655433
Q ss_pred ---CCCCCcchhhhhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 041103 282 ---PRPESSTIDKAHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQ 358 (516)
Q Consensus 282 ---PRPESyreD~~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~ 358 (516)
--.-|..+|+..|++. + .....|||+|+|+.++..|++||.+||..+.+.+|.+.++.+.+
T Consensus 533 lnp~~L~SGlDDYPRa~~p-~---------------~~e~hvDl~sWMa~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~ 596 (801)
T PF03200_consen 533 LNPHTLTSGLDDYPRASHP-S---------------DSERHVDLTSWMAFFALNMARIALELGKEDDAYEFFEHFEYISD 596 (801)
T ss_pred ccccCcCCCCCCCCCCCCC-C---------------ccceechHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 1123666777655442 1 12346999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCeEEeeeccCCcccch-------------hhhh----cccCCCCccchhhHHHHhhcCCCCchHHHHHH
Q 041103 359 AINSVFWNEEKGQWLDYWISNGTSSQE-------------CRRW----KASNQNNNAFASNFVPIWIDLFNSDTCIVEKV 421 (516)
Q Consensus 359 aIn~~lWDee~G~y~Dydl~~~~~~~~-------------~y~~----~~~~~~~~~~~s~~~PLwagia~~~~~~a~~v 421 (516)
+|++.+|||++|+|||+...+..+.-. .... ........++..+++||++++.++++++++++
T Consensus 597 ~l~~~hWdeedgfYyD~~~~~~~v~l~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~Gyvsl~Plll~ll~~ds~~L~~~ 676 (801)
T PF03200_consen 597 ALNKLHWDEEDGFYYDVGLHPDAVRLEWKEVLENGQFRRELVRVVRGEPQLQLVCHFGYVSLFPLLLGLLPPDSERLERL 676 (801)
T ss_pred HHHHhcCCcccCceeeeccccccceecccccccccccchhheecccCCccccceeeecccCCCchhhccCCCCHHHHHHH
Confidence 999999999999999999876511000 0000 00112456788899999999999877889999
Q ss_pred Hhhhhhc-CCcccceeeeccC-----CChhh-------------------------------------------------
Q 041103 422 RKGFQSS-GLLGAAGIATSLT-----RSGEQ------------------------------------------------- 446 (516)
Q Consensus 422 l~~L~~~-~ll~~gGIpTsl~-----~sgqQ------------------------------------------------- 446 (516)
++.|.++ .|++++||+|-.. ..+.+
T Consensus 677 L~~l~D~~ef~s~yGirSLSk~~~~y~~~~~e~d~~YWRGpIW~~~NyL~i~aL~~y~~~~g~~~~~a~~~y~~Lr~nli 756 (801)
T PF03200_consen 677 LERLLDEDEFWSPYGIRSLSKSDPFYGPGENEHDPSYWRGPIWIPINYLLIEALRRYGYYYGPYQERAKEIYKELRKNLI 756 (801)
T ss_pred HHHhcChhhccCCCCCccccCCCccccccCCccCCCcccCccchhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence 9999865 6889999998221 11100
Q ss_pred -HHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHc
Q 041103 447 -CNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEF 496 (516)
Q Consensus 447 -~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~y 496 (516)
+.++.|++||.+||.||+.+|.+.|. +...|||+.|+|.|.++|
T Consensus 757 ~nv~~~~~~tg~~~E~Y~~~tG~g~g~------~~FtGWtslv~~im~e~Y 801 (801)
T PF03200_consen 757 NNVYKEYKRTGYFWEQYNPETGRGQGA------HPFTGWTSLVVLIMAEQY 801 (801)
T ss_pred HHHHHHHhhcccEEEeECCCCCcccCC------CCCCchHHHHHHHHhccC
Confidence 34678889999999999998743332 345699999999998876
No 10
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1e-21 Score=211.90 Aligned_cols=283 Identities=21% Similarity=0.313 Sum_probs=201.2
Q ss_pred ccCCCCcccCC-CCCcceeeccccccc-----------------------------------------------------
Q 041103 191 LLLPGPIVIPS-SRFREVYYWDSYWVI----------------------------------------------------- 216 (516)
Q Consensus 191 i~lp~pfiVPG-GRFrE~YYWDSYfi~----------------------------------------------------- 216 (516)
.|.|-+=.||+ ++|--=+|||=-|.+
T Consensus 422 ~P~~LftaVPSR~~FPRGFyWDEGFH~l~i~~~D~~~t~Eil~sW~~l~n~DGWi~RE~iLG~EA~skvP~efivQ~~~~ 501 (849)
T KOG2161|consen 422 GPRPLFTAVPSRPFFPRGFYWDEGFHQLLIWEWDFDLTLEILASWFPLMNIDGWIPREQILGTEARSKVPNEFIVQYPDN 501 (849)
T ss_pred CCcCccccCCCCCCCCCcceeccchhhhhhhhcCccchHHHHHHHHhhhcccccchHHHHhhhHHHhhCCchhcccCccC
Confidence 45556678999 889888999988776
Q ss_pred cCCchHHHHHHHHHHHcC------C--HHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCC-CCCC---C
Q 041103 217 SQPPILSAMVYDIYNRTG------D--FDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMW-NKPR---P 284 (516)
Q Consensus 217 SQPPlla~mV~~~y~~t~------D--~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~-~~PR---P 284 (516)
.+||.|.++|+.+.+... | .+||++++|.|.|+|.||.+......+ -..|....-+|++... .+++ |
T Consensus 502 aNPPTLllav~~~~~~~~~~~~~~~r~~~fL~r~fprLl~~f~Wf~~sQ~G~~~-~~~~~~n~~YrWrGR~~~~~t~lnp 580 (849)
T KOG2161|consen 502 ANPPTLLLAVYRLLNREREMYGREDRSLTFLKRLFPRLLKWFTWFRKSQEGKNV-FEEGFDNEGYRWRGRDLPTGTTLNP 580 (849)
T ss_pred CCCceeHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhhcccCCcc-cccccccceeEeccCCCCCCceecc
Confidence 899999999999997532 2 389999999999999999865432111 0111111334444321 1111 1
Q ss_pred ---CCcchhhhhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 041103 285 ---ESSTIDKAHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAIN 361 (516)
Q Consensus 285 ---ESyreD~~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn 361 (516)
-|+.+|+..|++. +..| ..|||-|+++.+.+.|-.||+.+|..+........-.+-++.|.
T Consensus 581 ~~L~SGlDDyPRAs~P-s~~E---------------lhvDl~~W~~lasrsl~~iae~lg~~~~E~~~a~~e~~~~e~L~ 644 (849)
T KOG2161|consen 581 HCLSSGLDDYPRASHP-SVLE---------------LHVDLRCWVGLASRSLNRIAEFLGETEAEYATAITELECKENLV 644 (849)
T ss_pred ccccccccccccccCc-hHHH---------------HhhhhHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHH
Confidence 2677888777663 3222 36999999999999999999999987733334555556678999
Q ss_pred hhcccCCCCeEEeeeccCCcccch-----------hh---hhcccCC---CCccchhhHHHHhhcCCCCchHHHHHHHhh
Q 041103 362 SVFWNEEKGQWLDYWISNGTSSQE-----------CR---RWKASNQ---NNNAFASNFVPIWIDLFNSDTCIVEKVRKG 424 (516)
Q Consensus 362 ~~lWDee~G~y~Dydl~~~~~~~~-----------~y---~~~~~~~---~~~~~~s~~~PLwagia~~~~~~a~~vl~~ 424 (516)
+.+|||+.++|+|+...+.+..-. .+ .|..... .+++...+++|+..++.+.++.+..++++.
T Consensus 645 ~~HW~ee~~~y~D~g~h~~dv~~~~~p~~g~~~r~~~r~v~~~~p~~e~v~~h~GYvSl~P~mlrLlp~~S~rL~~~Ldl 724 (849)
T KOG2161|consen 645 QNHWSEEDQAYCDFGNHTEDVSITPEPSIGKQFRGLVRRVDWFVPNLELVDRHIGYVSLFPFMLRLLPATSPRLTKLLDL 724 (849)
T ss_pred HhccChhhCeeeeccCChhhccccccCCcccchhhhheeccccCCcceeeecccceeehhhhHHhhcCCCchHHHHHHHH
Confidence 999999999999987665432100 00 0110000 236777889999999999888899999999
Q ss_pred hhhcC-CcccceeeeccC--------CChhh------------------------------------------------H
Q 041103 425 FQSSG-LLGAAGIATSLT--------RSGEQ------------------------------------------------C 447 (516)
Q Consensus 425 L~~~~-ll~~gGIpTsl~--------~sgqQ------------------------------------------------~ 447 (516)
|.++. +++|+||.|-.. ||+.+ .
T Consensus 725 i~D~~~lwSpYGlrSLS~~s~yym~~Nte~d~pYWRGpIW~N~NYLiLsaL~~~Y~~~~gp~~~nA~~iyeELRaNlv~N 804 (849)
T KOG2161|consen 725 ISDENELWSPYGLRSLSRSSPYYMKRNTEHDPPYWRGPIWMNVNYLILSALRHFYLYVPGPYQSNAAKIYEELRANLVGN 804 (849)
T ss_pred hcCcccccCcchhhhhhhcCCccccccCCCCCcccccceeeehHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHH
Confidence 98875 569999988221 23333 3
Q ss_pred HHHHHHHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHc
Q 041103 448 NYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEF 496 (516)
Q Consensus 448 n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~y 496 (516)
+++.|++||.+||.||.++|. |.| .....|||+.|+++|.+.|
T Consensus 805 v~k~~~~tG~~wE~Yd~~tG~--G~g----a~~FtGWTaLVl~imse~y 847 (849)
T KOG2161|consen 805 VSKQWQQTGYFWENYDPRTGR--GLG----ARHFTGWTALVLLIMSENY 847 (849)
T ss_pred HHHHhhccceeeeecCCCCCC--ccc----cccccchHHHHHHHHHhcc
Confidence 457888999999999999873 323 2466899999999998876
No 11
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.47 E-value=7.7e-12 Score=131.88 Aligned_cols=233 Identities=17% Similarity=0.270 Sum_probs=158.4
Q ss_pred cccccCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCcc-ccccCCCCCeeeeEeeecCCCCCCCCCcchhh
Q 041103 213 YWVISQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHK-VNVQDDQGGNHTLSRYYAMWNKPRPESSTIDK 291 (516)
Q Consensus 213 Yfi~SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~-v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~ 291 (516)
|-.+..+|+|..++.+|++.|+|.+|+++++|.+++-.+|..++.+. +.+...+| |.... . .-..-+|.+ .
T Consensus 80 Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~g----l~~~~-~--~~~~~tWmD-~ 151 (370)
T PF06202_consen 80 YNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDFGIRVDPEDG----LIYSG-N--GLNNQTWMD-A 151 (370)
T ss_pred CCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCCccccccCCC----eeecC-C--CCCCCCccc-c
Confidence 55778999999999999999999999999999999999887766441 11111234 33211 1 111233442 1
Q ss_pred hhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCe
Q 041103 292 AHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQ 371 (516)
Q Consensus 292 ~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~ 371 (516)
. . + +. ........||++|++.|.+.+.++.+++..+++ .+.+|+++|+++|+++++.||+++.|+
T Consensus 152 ~---~--------~-g~--~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~-~a~~~~~~A~~lk~~F~~~FW~~~~g~ 216 (370)
T PF06202_consen 152 R---N--------D-GR--PVTPRDGAAVEIQALWYNALRFAAELAEKFGDE-LAARYREWAERLKESFEKRFWDEDRGY 216 (370)
T ss_pred c---c--------C-Cc--cccCCCCcchHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHcCCCCCE
Confidence 0 0 0 00 112234578999999999999999999987766 889999999999999999999999999
Q ss_pred EEeeeccCCcccchhhhhcccCCCCccchhh--HHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhhHHH
Q 041103 372 WLDYWISNGTSSQECRRWKASNQNNNAFASN--FVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQCNY 449 (516)
Q Consensus 372 y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~--~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ~n~ 449 (516)
|+|+--.+++ +...+.+.. .+-|+.+++++ ++++++++.+. +.+++|.||+| |..+
T Consensus 217 ~~d~ld~~~~------------~d~~irpN~~~a~~L~~~~l~~--~~a~~vl~~~~-~~L~tp~GlRT-Ls~~------ 274 (370)
T PF06202_consen 217 YADALDGDKE------------PDDSIRPNQLIALSLPPGLLDP--EQAKKVLDRVE-EELLTPWGLRT-LSPS------ 274 (370)
T ss_pred EEEEecCCCC------------CCcccccCchhHHhcCCccCCH--HHHHHHHHHHH-HHcCCCCchhc-ccCC------
Confidence 9998644332 111111111 23366778874 57888998874 47889999999 3211
Q ss_pred HHHHHhCccccccccccccc-CCCCCccCCCCCccccHHHHHHHHHHcCCC
Q 041103 450 VAYKETGAMHEKYDVEKCRD-IGGGGEYIPQTGFSWSNGAVLAFLEEFGWP 499 (516)
Q Consensus 450 ~~y~~tG~m~EKYdv~~~g~-~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~ 499 (516)
...|++.-.|. .-....|.+-.-.-|-||.++.-+.+||..
T Consensus 275 ---------~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~ 316 (370)
T PF06202_consen 275 ---------DPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFD 316 (370)
T ss_pred ---------CCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCcc
Confidence 11455532211 111234666677889999998888888774
No 12
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.32 E-value=7.4e-11 Score=130.11 Aligned_cols=225 Identities=14% Similarity=0.162 Sum_probs=148.2
Q ss_pred cccCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhh
Q 041103 215 VISQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHS 294 (516)
Q Consensus 215 i~SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A 294 (516)
++.-+|+|...|.+|++.|+|.+++++++|.|+...++.+.+.......|.+|. ++. +.+-.|++ ..
T Consensus 346 tvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~~~i~~d~dGL---i~~-------g~~lTWMD-a~-- 412 (575)
T TIGR01561 346 GVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGNDFAIGMDNDLI---FHK-------GAPLTWMD-AK-- 412 (575)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCcEEEECCCcc---EeC-------CCCCCCCC-CC--
Confidence 567789999999999999999999999999999999988776543222233341 211 01112221 10
Q ss_pred cccCCcccccCCCCCCcccccc--ccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeE
Q 041103 295 SKLLNASDKENTSDFTTLAITS--ILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQW 372 (516)
Q Consensus 295 ~~~~~~~ek~d~~~l~si~t~~--iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y 372 (516)
. .....++ -.||++||++|.+.+.++.+++.+|+. +..|+++|+++|+++++.||+++.|.+
T Consensus 413 ----------~----g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~--a~~y~~~A~~lk~~F~~~FW~~~~g~l 476 (575)
T TIGR01561 413 ----------V----DERAVTPRAGAACEINALWYNALKTAEFLGNELGED--AESLEEKAAGVAKNFAEKFINPDGNCL 476 (575)
T ss_pred ----------C----CCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHHhcCCCCCCee
Confidence 0 0112223 378999999999999999999999974 678999999999999999999999999
Q ss_pred EeeeccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhhHHHHHH
Q 041103 373 LDYWISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQCNYVAY 452 (516)
Q Consensus 373 ~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ~n~~~y 452 (516)
||+.-..+... .++....+++.-.+..+| .++.++ ++++++|++.+ .+.+++|.||+| |..+.
T Consensus 477 ~D~v~~d~~~~----~~~d~s~RPNql~A~sL~--~~ll~~-~~~~~~vl~~v-~~~Lltp~GlRT-Lsp~d-------- 539 (575)
T TIGR01561 477 FDLIHQDEAGN----QVKDKAIRPNQIFAISLP--FPIIDD-ESIAKAILDLI-EKDLLRPFGLKS-LSRDD-------- 539 (575)
T ss_pred EEEEecCCCCC----cccccccCCCceeHhhCC--CCCCCH-HHHHHHHHHHH-HhhccCCccccc-CCCCC--------
Confidence 98764332100 011111233333333333 356664 22778888655 457899999999 43211
Q ss_pred HHhCccccccccccccc-CCCCCccCCCCCccccHHHHHHH
Q 041103 453 KETGAMHEKYDVEKCRD-IGGGGEYIPQTGFSWSNGAVLAF 492 (516)
Q Consensus 453 ~~tG~m~EKYdv~~~g~-~GgGGEY~~Q~GFGWTNGV~L~l 492 (516)
-.|+..-.|. ...+..|..-+-..|--|.+++.
T Consensus 540 -------~~Y~p~Y~g~~~~Rd~aYHqGtvWpwl~G~y~~A 573 (575)
T TIGR01561 540 -------PLYKGQYKGDALSRDTAYHNGSLPPWLHGALVKA 573 (575)
T ss_pred -------CCcCCCCCCCccccCCcCcCCCcCccchhhHHhh
Confidence 1566553222 22355677767788888877653
No 13
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.04 E-value=3.3e-09 Score=118.65 Aligned_cols=216 Identities=16% Similarity=0.235 Sum_probs=148.2
Q ss_pred cCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcc
Q 041103 217 SQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSK 296 (516)
Q Consensus 217 SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~ 296 (516)
--.|+++.++.+|++.|+|.+|+++++|.+...++|+++.-+.-.+.+.+|. -+ +..+-.|.
T Consensus 339 D~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~~~~~~~~l----~~------~~~~~tW~-------- 400 (641)
T COG3408 339 DATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFGFDTYGDGL----LE------GGSNQTWM-------- 400 (641)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCccceecCccc----cc------CCCCCCCe--------
Confidence 4488999999999999999999999999999999999887542100111111 00 00011121
Q ss_pred cCCcccccCCCCCCccccc-cccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEee
Q 041103 297 LLNASDKENTSDFTTLAIT-SILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDY 375 (516)
Q Consensus 297 ~~~~~ek~d~~~l~si~t~-~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dy 375 (516)
|+..-.-..+. .--||++|++-|...+....++.++++.+++++|.+.|+++++.+++.+|++ ..|||.
T Consensus 401 --------Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl 470 (641)
T COG3408 401 --------DSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKESFEAKFWNP--TGFYDL 470 (641)
T ss_pred --------ecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhCc--cchHhh
Confidence 11111011111 3458999999777777777888888888999999999999999999999998 458887
Q ss_pred eccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhhHHHHHHHHh
Q 041103 376 WISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQCNYVAYKET 455 (516)
Q Consensus 376 dl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ~n~~~y~~t 455 (516)
-....+ .+.+..+.-.++++++|+.+++ .+ ++..|.+..+++++||+| +.....
T Consensus 471 ~~~~~~-----------~~~r~~~~~a~~l~~~gi~~~~---~~-~~~~l~e~~lltp~GlRT-LS~~dp---------- 524 (641)
T COG3408 471 ALDDKD-----------VPIRPNFSNAIHLLYTGIVDPE---RA-VIIRLAEEDLLTPWGLRT-LSPDDP---------- 524 (641)
T ss_pred hccCCC-----------cccCccceecccccccccCchH---HH-HHHHHHHHhccCCccccc-cCCCCC----------
Confidence 765422 1344555667899999999852 22 444444568899999999 332111
Q ss_pred CcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHcCCCC
Q 041103 456 GAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWPE 500 (516)
Q Consensus 456 G~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~~ 500 (516)
-|+.. -|..-+-.-|.||+++..+.+||...
T Consensus 525 -----~Y~p~---------yYH~GtVWP~~~gifv~g~~r~G~~~ 555 (641)
T COG3408 525 -----RYNPM---------YYHNGTVWPHDTGIFVLGLRRYGLKD 555 (641)
T ss_pred -----CcCCC---------cccCCCcccchHHHHHHHHHHcCccc
Confidence 22221 15555668899999999999999544
No 14
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=99.01 E-value=1.2e-09 Score=119.68 Aligned_cols=154 Identities=24% Similarity=0.365 Sum_probs=105.4
Q ss_pred cccCC--CCCcceeeccccccccCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEe
Q 041103 197 IVIPS--SRFREVYYWDSYWVISQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSR 274 (516)
Q Consensus 197 fiVPG--GRFrE~YYWDSYfi~SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~r 274 (516)
.++|. +.+..+.-|..+| ..+++.+|..+||++++++++|.+++..+|+.+..+. |.......
T Consensus 190 ~~~P~~~~~~~~~~~w~l~~--------i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ 254 (509)
T PF05592_consen 190 SVAPSYGGGGFGIPDWSLAW--------IIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD-------GLDGLPGW 254 (509)
T ss_dssp SBSS---SSGGGBHHHHHHH--------HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T-------SSB-CCSB
T ss_pred EEecccCCCCCCCccHHHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc-------cccCCCCC
Confidence 45566 5677777776655 4688999999999999999999999999998775442 21100111
Q ss_pred eecCCCCCCCCCcchhhhhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 041103 275 YYAMWNKPRPESSTIDKAHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQ 354 (516)
Q Consensus 275 Y~~~~~~PRPESyreD~~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~ 354 (516)
-+.+|..|- .+.. ..++. .+-.|+++|.+.+.+|+||+.+|+.+.++.|+++|+
T Consensus 255 ~~~DW~~~~-----~~~~--------------------~~~~~-~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~ 308 (509)
T PF05592_consen 255 GFGDWLAPG-----NDGD--------------------GPTPG-ATITNALYYYALRAAAELAEALGKDEDAAEYRARAE 308 (509)
T ss_dssp --S-SS---------TT-----------------------SCC-EEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred ceeecCCcc-----Cccc--------------------ccchH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112232111 0000 00010 123899999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCC
Q 041103 355 ARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNS 413 (516)
Q Consensus 355 ~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~ 413 (516)
++|++|++.|||+++| .+. . .--.++.++|++|++++
T Consensus 309 ~lk~a~~~~~~d~~~g---~~~--~-----------------~sq~~~alAl~~gl~p~ 345 (509)
T PF05592_consen 309 RLKAAINRHFWDPEKG---GYA--D-----------------GSQHANALALLFGLVPE 345 (509)
T ss_dssp HHHHHHHHHCEETTTT---EEC--T-----------------TSHCHHHHCHHCCHC-H
T ss_pred HHHHHHHHhccCcccC---ccc--C-----------------CchHHHHHHHHhchhhh
Confidence 9999999999999999 222 1 11358899999999984
No 15
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=98.54 E-value=4.4e-07 Score=95.71 Aligned_cols=139 Identities=27% Similarity=0.298 Sum_probs=64.7
Q ss_pred cCCCCCcceeeccccccccCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecC
Q 041103 199 IPSSRFREVYYWDSYWVISQPPILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAM 278 (516)
Q Consensus 199 VPGGRFrE~YYWDSYfi~SQPPlla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~ 278 (516)
.|=+|-+-.-+.|.+.-..-.|.|.++|+++|..|+|.+||++++|.+.+-.+|.++ .+. |.+|. +.....
T Consensus 81 ~P~~~~n~y~~~~~~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~-~D~----d~dGl---~e~~g~- 151 (365)
T PF04685_consen 81 DPWDRTNAYNYHDVYAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS-WDR----DGDGL---PENPGH- 151 (365)
T ss_dssp ------------------------------------------EHHHHHHHHHHHHHH-SB------TTS----BEEET--
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh-hCC----CCCCC---CCCCCC-
Confidence 334555555556888888899999999999999999999999999999999998776 332 44552 111000
Q ss_pred CCCCCCCCcchhhhhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 041103 279 WNKPRPESSTIDKAHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQ 358 (516)
Q Consensus 279 ~~~PRPESyreD~~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~ 358 (516)
..-.| |.... .-+..=.+++.+.+.+.++++|+++|+.+.+++|++.+++.++
T Consensus 152 ----~D~Ty--D~~~~---------------------~G~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~ 204 (365)
T PF04685_consen 152 ----PDQTY--DDWSM---------------------YGPSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKK 204 (365)
T ss_dssp ------SSS--TT-EE---------------------EEEEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH
T ss_pred ----Ccccc--ccCCe---------------------eCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 00011 11100 0012345788888999999999999999999999999999999
Q ss_pred HHHhhcccCCCCeEEe--ee
Q 041103 359 AINSVFWNEEKGQWLD--YW 376 (516)
Q Consensus 359 aIn~~lWDee~G~y~D--yd 376 (516)
++++.|||.+ ||. ||
T Consensus 205 ~~~~~LWnGe---yy~~~~d 221 (365)
T PF04685_consen 205 AFNKKLWNGE---YYRQWYD 221 (365)
T ss_dssp HHHHHSEETT---EE--EE-
T ss_pred HHHHHhhCHh---heeeeec
Confidence 9999999977 887 55
No 16
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.03 E-value=0.00015 Score=81.68 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCCCcchhhhhhcccCCc
Q 041103 221 ILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESSTIDKAHSSKLLNA 300 (516)
Q Consensus 221 lla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyreD~~~A~~~~~~ 300 (516)
...+.+..+++.|+|.+|+++++|.+++-.+|-.+..+. ++ |.|..-+. +
T Consensus 357 ~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~------~l--------------~~~~~~lW--E-------- 406 (616)
T TIGR01577 357 SILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP------ET--------------PLPCRDLW--E-------- 406 (616)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC------CC--------------CCCCCccc--e--------
Confidence 344567778899999999999999999999987665431 11 11100000 0
Q ss_pred ccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCC
Q 041103 301 SDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNG 380 (516)
Q Consensus 301 ~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~ 380 (516)
+ +.+. ++--++..|.+....++||+.+|+.+.+++|++.|++++++|++.+||++.|.|.++-- ++
T Consensus 407 -e-r~G~-----------~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~-~~ 472 (616)
T TIGR01577 407 -E-REGV-----------FTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIK-LM 472 (616)
T ss_pred -e-cCCc-----------cCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeec-CC
Confidence 0 0000 12237899999999999999999998899999999999999999999999999987542 11
Q ss_pred cccchhhhhcccCCCCccchhhH-HHHhhcCCCCchHHHHHHHhhhh
Q 041103 381 TSSQECRRWKASNQNNNAFASNF-VPIWIDLFNSDTCIVEKVRKGFQ 426 (516)
Q Consensus 381 ~~~~~~y~~~~~~~~~~~~~s~~-~PLwagia~~~~~~a~~vl~~L~ 426 (516)
. .....-+|-+ +|+-.|+.+++..++...++.+.
T Consensus 473 ~------------~~~~vDaSlL~l~~~~g~l~~~Dpr~v~Tv~~I~ 507 (616)
T TIGR01577 473 V------------LDKTIDISILGISVPFNLIAPDDERMVKMAEAIE 507 (616)
T ss_pred C------------CCCcccHHHHhHHHhcCCCCCCChHHHHHHHHHH
Confidence 0 1122334433 44547888765445544455544
No 17
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=97.70 E-value=0.0011 Score=79.27 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=103.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHHhhcccCC-CCeEEeeec--cCCccc-c
Q 041103 314 ITSILPIDLNIFILKMELDIASMAQIV-----GDNRTAESFLKTAQARKQAINSVFWNEE-KGQWLDYWI--SNGTSS-Q 384 (516)
Q Consensus 314 t~~iiPVDLNAlLy~~e~~LA~la~~l-----G~~~~A~~~~~~A~~rk~aIn~~lWDee-~G~y~Dydl--~~~~~~-~ 384 (516)
.++-.||++||++|.+.+.++++++.. |.......|.++|++.++.+++.||+++ .+.=||++- ++++.. .
T Consensus 1217 PRdG~aVEInaLwynAL~~~~~l~~~~~~~~~g~~~~~~~~~~wa~~ik~~Fe~~F~~~~~~~~lyDv~~~~vnrrgIyk 1296 (1464)
T TIGR01531 1217 PRDGAAVEIVGLLKSALRFLIELKEKGVFKRSGVETQKWSYIEWNQKIQDNFEKRFFVDESQDADYDVAKLGVNRRGIYK 1296 (1464)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHHhcCcCcCCcccchhhHHHHHHHHHHHHhhhcCCCcccCccccccchhhccccccc
Confidence 356679999999999999999999987 7765567899999999999999999954 344455542 111100 0
Q ss_pred hhh----hhcccCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhhHHHHHHHHhCcccc
Q 041103 385 ECR----RWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQCNYVAYKETGAMHE 460 (516)
Q Consensus 385 ~~y----~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ~n~~~y~~tG~m~E 460 (516)
..| .|.+-..++++-.|..+| -.+.+ .+++.++++.. + .++.|.|+.| |..+.. +|++
T Consensus 1297 D~~~s~~~~~D~qlRPN~~iA~sla--~~l~~--~~~a~~~L~~v-~-~LltP~GlRT-LdP~D~--~Y~g--------- 1358 (1464)
T TIGR01531 1297 DSYGSTKPWTDYQLRPNFAIAMTVA--PELFV--PEKAWKALTIA-E-VLLGPLGMKT-LDPSDW--NYRG--------- 1358 (1464)
T ss_pred cccCCCCCCCCcccCCCceEEEeCC--cccCC--HHHHHHHHHHH-H-HhccCCcccc-CCCCCc--CCCC---------
Confidence 000 122223444554443333 13334 35677788776 3 5889999999 432211 1111
Q ss_pred ccccc---ccccCCCCCccCCCCCccccHHHHHHHHHHcCC
Q 041103 461 KYDVE---KCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGW 498 (516)
Q Consensus 461 KYdv~---~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~ 498 (516)
+|+=. +-.....|-.|..-+-+.|--|.++..+-+++.
T Consensus 1359 ~Y~g~~dsrD~~t~kg~aYHqG~eW~WllG~fl~A~lk~~~ 1399 (1464)
T TIGR01531 1359 YYNNGEDSDDFATAKGRNYHQGPEWVWPIGYFLRARLHFHF 1399 (1464)
T ss_pred ccCCchhhccccccccccccCCCcCccchhHHHHHHHHhcc
Confidence 12110 001123345677777799999998887776644
No 18
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.22 Score=54.80 Aligned_cols=170 Identities=18% Similarity=0.320 Sum_probs=93.2
Q ss_pred cCCc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCCCcc
Q 041103 217 SQPP--------ILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESST 288 (516)
Q Consensus 217 SQPP--------lla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyr 288 (516)
+||| =|.+||++++.-|+|.+||++.+|.+.+-.+|-+.-+. +.+|. ||.-.
T Consensus 434 ~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~e~y~~iv~~iD~~~~~d~-----d~Dgi---------------P~~~g 493 (721)
T COG4354 434 YQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKRFDQ-----DNDGI---------------PENSG 493 (721)
T ss_pred cCCchhhhhcCCcEEeeehhhhhhcccHHHHHHHHHHHHHHHHHHHhhcc-----cCCCC---------------CcccC
Confidence 7787 46688999999999999999999999999998664332 34552 11100
Q ss_pred -hhhhhhcccCCcccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHH
Q 041103 289 -IDKAHSSKLLNASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIVGDN-----------RTAESFLKTAQAR 356 (516)
Q Consensus 289 -eD~~~A~~~~~~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~lG~~-----------~~A~~~~~~A~~r 356 (516)
-|- . -|.+.+.-+.+ =--++...+....-.|++.+++. .....|..+-+..
T Consensus 494 ~~d~----~-------fDa~~i~G~ss------y~~sl~iaal~A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~ 556 (721)
T COG4354 494 AMDN----T-------FDATRIQGHSS------YCGSLFIAALIAALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEA 556 (721)
T ss_pred Cccc----c-------cccceeechhh------hhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 000 0 01111110000 00112222222333344444443 1234577788888
Q ss_pred HHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCCCccchhh----HHHHhhcCCCC-chHHHHHHHhhhhhcCCc
Q 041103 357 KQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQNNNAFASN----FVPIWIDLFNS-DTCIVEKVRKGFQSSGLL 431 (516)
Q Consensus 357 k~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~----~~PLwagia~~-~~~~a~~vl~~L~~~~ll 431 (516)
++++|++||| |-||-.+-..+ +.++-++. |+-=..|+.+- +.++++++++.+-+-++-
T Consensus 557 ~e~~~~~LwN---GkYy~lws~~~--------------~~s~lAsQL~Gqfy~~LLgLpdivdhd~~ksal~sIy~lnf~ 619 (721)
T COG4354 557 REAFNKYLWN---GKYYILWSNSG--------------NDSVLASQLCGQFYATLLGLPDIVDHDKIKSALESIYDLNFN 619 (721)
T ss_pred HHHHHHhccC---ceeEecccccC--------------chhhhHHHHHhHHHHHHcCCCcccchHHHHHHHHHHHhhccc
Confidence 9999999998 66876663222 22333333 44444555542 345677777776553332
Q ss_pred -ccceeeecc
Q 041103 432 -GAAGIATSL 440 (516)
Q Consensus 432 -~~gGIpTsl 440 (516)
.++|.+-..
T Consensus 620 ~~~~~~~n~v 629 (721)
T COG4354 620 ASEYCAANGV 629 (721)
T ss_pred cccccccCcc
Confidence 455555433
No 19
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=94.86 E-value=1.1 Score=48.17 Aligned_cols=259 Identities=18% Similarity=0.234 Sum_probs=125.3
Q ss_pred eeccccccccCCchHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhcCccccccCCCCCe-eeeEeeecCCCCCCCC
Q 041103 208 YYWDSYWVISQPPILSAMVYDIYNRTGDFDFV-KKALPALLKEHQFWNSRIHKVNVQDDQGGN-HTLSRYYAMWNKPRPE 285 (516)
Q Consensus 208 YYWDSYfi~SQPPlla~mV~~~y~~t~D~~fL-~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~-~~L~rY~~~~~~PRPE 285 (516)
+-|.-=|-+.---.+..+.+.||++|+|.+++ +....++++-.+-|..+++. +. +.+|.. ..-++|-.. +.++
T Consensus 119 ~v~ErKyElDSL~~~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~-t~-~~~~~~~~s~Y~F~R~--~~~~- 193 (424)
T PF06824_consen 119 WVWERKYELDSLCYFLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRP-TY-DEDHEGLPSPYRFQRP--TCRP- 193 (424)
T ss_dssp TEEE----HHHHHHHHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG--------SSSCS-S---BES--BSSG-
T ss_pred ceeeecchhhhhhHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHh-hh-ccccccCCCcceeecc--CCCC-
Confidence 44555555544446677889999999998876 34667777778878777652 11 122210 112222211 1111
Q ss_pred CcchhhhhhcccCCcccccCCCCCCcccccc---c--cchhHHHHHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHH
Q 041103 286 SSTIDKAHSSKLLNASDKENTSDFTTLAITS---I--LPIDLNIFILKMELDIASMAQIVGDNR---TAESFLKTAQARK 357 (516)
Q Consensus 286 SyreD~~~A~~~~~~~ek~d~~~l~si~t~~---i--iPVDLNAlLy~~e~~LA~la~~lG~~~---~A~~~~~~A~~rk 357 (516)
.|...-.+..+ +-+..+..-+..|.++ + .-|=-|+++......|++|.+.++..+ .|++.++.|++++
T Consensus 194 ---tdtl~~~G~G~-pv~~tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~eI~ 269 (424)
T PF06824_consen 194 ---TDTLPNDGRGN-PVAYTGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADEIR 269 (424)
T ss_dssp ---GGS-HHHHT-S-----SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHH
T ss_pred ---CccccCCCcCC-cCCCCCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 11111011000 0000010001112211 1 125579999999999999999887654 7889999999999
Q ss_pred HHHHhhccc--CCCCeEEeeeccCCcccchhhhhcccCCCCccchhh-HHHHhhcCCCCchHHHHHHHhhhhhcC---Cc
Q 041103 358 QAINSVFWN--EEKGQWLDYWISNGTSSQECRRWKASNQNNNAFASN-FVPIWIDLFNSDTCIVEKVRKGFQSSG---LL 431 (516)
Q Consensus 358 ~aIn~~lWD--ee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~-~~PLwagia~~~~~~a~~vl~~L~~~~---ll 431 (516)
++|.++.=- ++-|.-|-|-...- +.+..+ ++ -++ +|- -+| +.|..+.+.+.-++..+.+.++. ..
T Consensus 270 ~gI~~~giv~h~~~g~iyAYEVDG~-G~~~~m--DD---ANv--PSLLSlP-ylGf~~~~DpvYqnTR~~iLS~~~NPyy 340 (424)
T PF06824_consen 270 AGIEKHGIVEHPKFGKIYAYEVDGF-GNHLLM--DD---ANV--PSLLSLP-YLGFCSKDDPVYQNTRRFILSPEGNPYY 340 (424)
T ss_dssp HHHHHHSEEEETTTEEEE-SEE-SS-S-EE---------SSS--S-STTHH-HHTSS-TT-HHHHHHHHHHTSTT-STTE
T ss_pred HHHHHheEEeCCCCCeEEEEEecCC-CCcccc--CC---CCC--chHhhhh-hcCCCCCCcHHHHHHHHHHhCCCCCCcc
Confidence 999987543 35566677765321 111111 00 012 232 367 45665544445566666665443 12
Q ss_pred ccc----eeeeccCCChhh---------------------HHHHHHHH----hCcccccccccccccCCCCCccCCCCCc
Q 041103 432 GAA----GIATSLTRSGEQ---------------------CNYVAYKE----TGAMHEKYDVEKCRDIGGGGEYIPQTGF 482 (516)
Q Consensus 432 ~~g----GIpTsl~~sgqQ---------------------~n~~~y~~----tG~m~EKYdv~~~g~~GgGGEY~~Q~GF 482 (516)
+.| ||-++- +|.+ ...+...+ +|.|+|-+|+.++.. | ...-|
T Consensus 341 ~~G~~~~GiGsPH--t~~~~iWPmsl~~~~lTs~d~~Ei~~~L~~L~~t~~gtGlmHES~d~~~~~~------~-TR~WF 411 (424)
T PF06824_consen 341 FSGKAASGIGSPH--TPPGYIWPMSLAMQGLTSDDDEEIRECLRMLKRTTAGTGLMHESFDVDDPSK------F-TRPWF 411 (424)
T ss_dssp EEESSEEEE--TT--T-TTEEEHHHHHHHHHT-S-HHHHHHHHHHHHHTSTTSSS--SEEETTEEEE------E-E-S-B
T ss_pred ccCCCcCCCCCCC--CCCCCccHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCceeccccCCCCcc------c-CcHHH
Confidence 222 343322 2221 11222222 799999999987643 2 12569
Q ss_pred cccHHHHHHHH
Q 041103 483 SWSNGAVLAFL 493 (516)
Q Consensus 483 GWTNGV~L~ll 493 (516)
.|.|+.+-.|+
T Consensus 412 aWaNslF~eli 422 (424)
T PF06824_consen 412 AWANSLFGELI 422 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 20
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.00 E-value=0.52 Score=53.33 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcccCCCCccc
Q 041103 320 IDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKASNQNNNAF 399 (516)
Q Consensus 320 VDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~ 399 (516)
.=-++.+|......+.||+..|+...|+.|...|++++++|.+.+++++.|.|--+--.. ....+-
T Consensus 416 ~yt~~~~~agLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~~--------------~~~~vD 481 (612)
T COG3387 416 TYTKATVYAGLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGRK--------------PDDTVD 481 (612)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCCC--------------cccccc
Confidence 445788999999999999999999999999999999999999999999988776443221 123444
Q ss_pred hhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccc-eeeeccC--CChh-h--------HHH---------------HHH
Q 041103 400 ASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAA-GIATSLT--RSGE-Q--------CNY---------------VAY 452 (516)
Q Consensus 400 ~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~g-GIpTsl~--~sgq-Q--------~n~---------------~~y 452 (516)
+|-+-....|+.+++..++.+.++.+.+ .+..++ |+.-=.. ..|. + +.| ...
T Consensus 482 asll~l~~fg~i~~~D~~~~~t~~~I~~-~L~~~~~gi~RY~~~~~d~~~~~~~~w~i~t~Wl~~~~~~~g~~~~a~~ll 560 (612)
T COG3387 482 ASLLGLVLFGFIPPDDPRILATVEAIER-ELLVDGGGIRRYNNEYDDGLGGDNGPWIITTLWLSEYYLALGRLDEAKKLL 560 (612)
T ss_pred HHHhhccccCccCCCCHHHHHHHHHHHH-HHhhcCCcEEcCccccccccCCCCCcceeehhHHHHHHHHccchHHHHHHH
Confidence 5554444467776654455555555443 222233 3322110 0000 0 111 001
Q ss_pred -------HHhCcccccccccccccCCCCCccCCCCCccccHHHHHHHHHHcCCC
Q 041103 453 -------KETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGAVLAFLEEFGWP 499 (516)
Q Consensus 453 -------~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV~L~ll~~yg~~ 499 (516)
..+|-|-|.+|..+|... |..| -.|+.+-++..+..+-+.
T Consensus 561 ~~l~~~a~~~gll~EQv~~~~G~~~---g~~P----lawSha~~I~ai~~l~~~ 607 (612)
T COG3387 561 EWLLAFASPLGLLPEQVDDGSGEPL---GAFP----LAWSHAEFIIAIRELEEA 607 (612)
T ss_pred HHHHHhcCCCCCcchhhcCCCCccC---CCCc----chhhhHHHHHHHHHHHhh
Confidence 127999999998764322 3333 389999888888766443
No 21
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=93.49 E-value=0.56 Score=53.41 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCC-----CCeEEeeeccCCcccchhhhhccc----CC
Q 041103 324 IFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEE-----KGQWLDYWISNGTSSQECRRWKAS----NQ 394 (516)
Q Consensus 324 AlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee-----~G~y~Dydl~~~~~~~~~y~~~~~----~~ 394 (516)
|-++......++||+.+|+.+.+++|++.|++.++.|.+.+|+++ .|.|.-...............+.. ..
T Consensus 406 a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~ 485 (648)
T TIGR01535 406 AAEIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPE 485 (648)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCC
Confidence 344477788899999999998899999999999999999999999 888876621110000000000000 02
Q ss_pred CCccchhhHHHHhhcCCCCchHHHHHHHhhhh
Q 041103 395 NNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQ 426 (516)
Q Consensus 395 ~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~ 426 (516)
....-+|-+.--..|+.+++..++...++.+.
T Consensus 486 ~~~vDaSlL~L~~~G~~~~dDPri~~Tl~aIe 517 (648)
T TIGR01535 486 KEVLDPGFLELVRLGVKSPDDPHILATLKEID 517 (648)
T ss_pred CCccCHHHHHHHHcCCcCCCCHHHHHHHHHHH
Confidence 34455666633448888875556555555554
No 22
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=89.61 E-value=1.6 Score=51.03 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccC-CcccchhhhhcccCCCCcc
Q 041103 320 IDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISN-GTSSQECRRWKASNQNNNA 398 (516)
Q Consensus 320 VDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~-~~~~~~~y~~~~~~~~~~~ 398 (516)
|=|-=+++...++...+|+.+|+.+.+..|.+.++..++++.+.-|| |-||-...-. ++.. .-.+....+..
T Consensus 757 v~lgW~l~~tlq~F~~lak~r~d~~r~~~~~~~~ea~~~~~~~~~wD---g~wy~r~~~d~g~~l----gs~e~~E~qI~ 829 (1056)
T COG3459 757 VWLGWFLALTLQTFKELAKARGDEARADTWAKHVEALREALETNGWD---GEWYRRGYGDDGTPL----GSPEDEECQID 829 (1056)
T ss_pred eehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCC---cceEEeccccCCCcc----cCCCCccccee
Confidence 45677888999999999999999999999999999999999999999 5676544322 2210 00001123455
Q ss_pred chhhHHHHhhcCCCCchHHHHHHHhhhhhcCCcccceee
Q 041103 399 FASNFVPIWIDLFNSDTCIVEKVRKGFQSSGLLGAAGIA 437 (516)
Q Consensus 399 ~~s~~~PLwagia~~~~~~a~~vl~~L~~~~ll~~gGIp 437 (516)
+.+.-+-+..|..++ +++++.++.+.+ .|+.|.||.
T Consensus 830 ~i~qs~sVlSg~gd~--~ra~kaMd~v~k-~L~~pdgvr 865 (1056)
T COG3459 830 SIPQSWSVLSGEGDK--ERAEKAMDSVMK-YLVDPDGVR 865 (1056)
T ss_pred eeccchhhhhCCCCh--HHHHHHHHHHHH-hccCccccE
Confidence 567777788888875 567776666653 445666653
No 23
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=87.86 E-value=2.3 Score=48.08 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCC
Q 041103 323 NIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNG 380 (516)
Q Consensus 323 NAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~ 380 (516)
-++-..+.+.++++|+++|++..+..|..+-++-|++..+.||| |.||.||....
T Consensus 627 GgLWlAALqa~~amA~~~g~~~~~~~f~~klekak~~ye~kLWN---GsYfnyD~s~s 681 (879)
T KOG2119|consen 627 GGLWLAALQAASAMARQIGDPNTQDYFNNKLEKAKDVYEKKLWN---GSYFNYDESSS 681 (879)
T ss_pred hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHhhcC---CceeccccCCC
Confidence 45666778899999999999999999999999999999999998 89999997543
No 24
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=48 Score=35.10 Aligned_cols=254 Identities=18% Similarity=0.214 Sum_probs=134.1
Q ss_pred ccccccccCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCCCcc
Q 041103 210 WDSYWVISQPPILSAMVYDIYNRTGDFD-FVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPESST 288 (516)
Q Consensus 210 WDSYfi~SQPPlla~mV~~~y~~t~D~~-fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPESyr 288 (516)
|.-=|-+.---...+..+.|++.|+|.+ |=.+...+++.-++-|..+.+.- .++ -+|+-. ++-|+
T Consensus 128 wERKYEiDSLCYPiqLAYl~wk~Tg~t~~Fde~f~~a~~~il~~~~~eQ~h~----~~s----pY~F~R--~t~r~---- 193 (434)
T COG3538 128 WERKYEIDSLCYPIQLAYLYWKATGDTSQFDEDFRQAVETILRVWKVEQDHE----TDS----PYRFER--DTDRK---- 193 (434)
T ss_pred heeeeeccchhhHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhHhhccC----CCC----Ceeeec--ccccc----
Confidence 3333444334556778888999999875 44556667777788888776631 112 233321 11111
Q ss_pred hhhhhhcccCCcccccCCCCCC-cccc-----ccccchhHHHHHHHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHHH
Q 041103 289 IDKAHSSKLLNASDKENTSDFT-TLAI-----TSILPIDLNIFILKMELDIASMAQ-IVGDNRTAESFLKTAQARKQAIN 361 (516)
Q Consensus 289 eD~~~A~~~~~~~ek~d~~~l~-si~t-----~~iiPVDLNAlLy~~e~~LA~la~-~lG~~~~A~~~~~~A~~rk~aIn 361 (516)
+|...-.+... .-+..+-.. -.|. ..-.-|=-|.|+......+.+|.+ +.++.+.|++.++++++.+++|.
T Consensus 194 ~dTL~~~G~G~--~~a~tGM~wSgFRPSDDAC~YgYliPsNmFaVVvl~y~~ei~~~~~~~~~~a~~a~~L~~eIq~Gi~ 271 (434)
T COG3538 194 SDTLGRAGKGA--PTAPTGMTWSGFRPSDDACEYGYLIPSNMFAVVVLSYLQEILEALPHDAEIARQAKELANEIQQGIE 271 (434)
T ss_pred chhhhhCCCCC--CcCcccceecCcCCCccchhcccccccchhhhhhHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 000000001 1121 111124457777777777888877 66788889999999999999998
Q ss_pred hh--cccCCCCeEEeeeccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCCchHHHHHHHhhhhhcC--Cccc----
Q 041103 362 SV--FWNEEKGQWLDYWISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKGFQSSG--LLGA---- 433 (516)
Q Consensus 362 ~~--lWDee~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~~--ll~~---- 433 (516)
++ +=++.-|-.|-|....-.. .-.. ...--+|-+.-=+.|....+...-.+..+.+.++. ..+.
T Consensus 272 ~~g~~~~~~~~~iyAyEVDG~Gn-~l~M-------DDaNvPSLLa~PYLG~c~~dDpvY~~TRk~iLS~eNPYy~eG~~a 343 (434)
T COG3538 272 QFGKMDHPKGGEIYAYEVDGLGN-QLFM-------DDANVPSLLAAPYLGFCEKDDPVYQNTRKTILSSENPYYYEGKYA 343 (434)
T ss_pred HhceecCCCCCeeEEEEecCCCc-eeec-------cCCCchhhhhhhhhccccCCCHHHHHHHHHHHhcCCCceecceee
Confidence 75 3356667778787643110 0000 01112343433456776654344444444444322 2222
Q ss_pred ceeeeccCCChh----------h-----------HHHHHHHH----hCcccccccccccccCCCCCccCCCCCccccHHH
Q 041103 434 AGIATSLTRSGE----------Q-----------CNYVAYKE----TGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNGA 488 (516)
Q Consensus 434 gGIpTsl~~sgq----------Q-----------~n~~~y~~----tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNGV 488 (516)
-||-++- |+. | .....++. ||.|+|-+||.++.. | ..+=|.|.|..
T Consensus 344 ~GiGSpH--Tp~~yvWpiaLaiqgLTa~D~~ek~~iL~~L~~tdaGTg~MHE~f~vd~P~~------f-TR~WFsWAN~m 414 (434)
T COG3538 344 SGIGSPH--TPDHYVWPIALAIQGLTANDDSEKKEILDMLKATDAGTGLMHEGFDVDDPEQ------F-TREWFSWANMM 414 (434)
T ss_pred ccCCCCC--CCCcccchHHHHHhhcccCChHHHHHHHHHHHhccCCccceecccCCCCHHH------h-hhHHHHHHHHH
Confidence 2443322 221 1 22233333 799999999988732 2 23569999998
Q ss_pred HHHHHHHc
Q 041103 489 VLAFLEEF 496 (516)
Q Consensus 489 ~L~ll~~y 496 (516)
+-.|+-.|
T Consensus 415 F~Elild~ 422 (434)
T COG3538 415 FCELILDL 422 (434)
T ss_pred HHHHHHHH
Confidence 76665433
No 25
>PLN03005 beta-fructofuranosidase
Probab=80.53 E-value=40 Score=37.33 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCeeeeEeeecCCCCCCCC-CcchhhhhhcccCC
Q 041103 221 ILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNSRIHKVNVQDDQGGNHTLSRYYAMWNKPRPE-SSTIDKAHSSKLLN 299 (516)
Q Consensus 221 lla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~~R~~v~~~~~~G~~~~L~rY~~~~~~PRPE-SyreD~~~A~~~~~ 299 (516)
.+...+..|.+.|+|.+|.++ |..+|-.++.++---. . ..+.. ..|.. |+ |...|-.
T Consensus 208 WWIIllraY~k~tgD~s~~e~--pevQrgi~lil~lcLa-~--~Fd~~-ptLlv---------pDgs~miDRr------- 265 (550)
T PLN03005 208 WWIILLRAYTKSTGDLTLSET--PECQKGMKLILSLCLA-E--GFDTF-PTLLC---------ADGCSMIDRR------- 265 (550)
T ss_pred HHHHHHHHHHhhccchhhhhC--hHHHHHHHHHHHHhcc-c--ccCCC-ceEec---------cCCccccccc-------
Confidence 456788999999999999988 9999999887442100 0 00111 12221 11 1112211
Q ss_pred cccccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhcccC-----------
Q 041103 300 ASDKENTSDFTTLAITSILPIDLNIFILKMELDIASMAQIV-GDNRTAESFLKTAQARKQAINSVFWNE----------- 367 (516)
Q Consensus 300 ~~ek~d~~~l~si~t~~iiPVDLNAlLy~~e~~LA~la~~l-G~~~~A~~~~~~A~~rk~aIn~~lWDe----------- 367 (516)
--..-.|...++++|.+.+...++-.-- +..+......++-..++.-|+.+.|=+
T Consensus 266 -------------Mgv~G~pLeiQaLfy~ALR~~~~~L~~~~~~~~~i~~i~~rl~~L~~h~r~yyWld~~~ln~iyr~k 332 (550)
T PLN03005 266 -------------MGVYGYPIEIQALFFMALRSALSMLKPDGDGREFIERIVKRLHALSFHMRNYFWLDHQNLNDIYRFK 332 (550)
T ss_pred -------------cccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHheecchhhhhhhhhcc
Confidence 1123357899999999888876532211 112233333344444555667777711
Q ss_pred ----------------------------CCCeEEeeeccCCcccchhhhhcccCCCCccchhhHHHHhhcCCCCchHHHH
Q 041103 368 ----------------------------EKGQWLDYWISNGTSSQECRRWKASNQNNNAFASNFVPIWIDLFNSDTCIVE 419 (516)
Q Consensus 368 ----------------------------e~G~y~Dydl~~~~~~~~~y~~~~~~~~~~~~~s~~~PLwagia~~~~~~a~ 419 (516)
++|-|+=-++..+. -..+.+...|++-...+++++ +|++
T Consensus 333 teey~~~a~NkfNi~pd~ip~wl~dwlp~~gGY~igNv~pa~-----------~dfRffslGNllAILs~Lat~--~Qs~ 399 (550)
T PLN03005 333 TEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAH-----------MDFRWFALGNCVSILSSLATP--DQSM 399 (550)
T ss_pred HhhhchhhhhccccCCccchhhhhhhcccCCceeeeeccccc-----------CCceehhhhhHHHHHhccCCH--HHHH
Confidence 11222222221110 012457789999999999996 5677
Q ss_pred HHHhhhh
Q 041103 420 KVRKGFQ 426 (516)
Q Consensus 420 ~vl~~L~ 426 (516)
++++.++
T Consensus 400 aIm~lIe 406 (550)
T PLN03005 400 AIMDLLE 406 (550)
T ss_pred HHHHHHH
Confidence 7887776
No 26
>PLN02973 beta-fructofuranosidase
Probab=79.87 E-value=45 Score=37.00 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 041103 221 ILSAMVYDIYNRTGDFDFVKKALPALLKEHQFWNS 255 (516)
Q Consensus 221 lla~mV~~~y~~t~D~~fL~~~lP~L~kEy~fW~~ 255 (516)
.+...++.|.+.|+|.+|.+ -|..+|-.++.+.
T Consensus 229 WWIIllraY~k~TgD~s~~e--~pevQrgi~lil~ 261 (571)
T PLN02973 229 WWIILLRAYTKSTGDSSLAD--MPECQKGIRLILS 261 (571)
T ss_pred HHHHHHHHHHHhccchhhhh--cHHHHHHHHHHHH
Confidence 45678899999999999888 8999999987765
No 27
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=65.00 E-value=1.1e+02 Score=31.74 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeee
Q 041103 332 DIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYW 376 (516)
Q Consensus 332 ~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dyd 376 (516)
.|..+++..|+. .|.++|+++-+.+.+.+||++.|.|++..
T Consensus 247 ~ll~l~~~~~~~----~~~~~a~~~~~~~~~~~~d~~~G~~~~~~ 287 (384)
T cd00249 247 LLLRIASRSGQA----WLIEKARRLFDLALALGWDPERGGLYYSF 287 (384)
T ss_pred HHHHHHhhcCCH----HHHHHHHHHHHHHHHhCcCccCCCEEEee
Confidence 555666667743 58899999999999999999999888833
No 28
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=55.86 E-value=63 Score=35.02 Aligned_cols=53 Identities=25% Similarity=0.450 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH------HhhcccCCCCeEEeee
Q 041103 323 NIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQAI------NSVFWNEEKGQWLDYW 376 (516)
Q Consensus 323 NAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aI------n~~lWDee~G~y~Dyd 376 (516)
.+.++++....+++|+.+|+...++.|++.|++.++.| .+-+|+ +.+.|.-..
T Consensus 187 ~~~~~~AL~~a~~~a~~~g~~~~~~~~~~~a~~i~~~l~~~~~~~~g~~~-~~~~~~~~~ 245 (448)
T PF00723_consen 187 SAMQWAALLRAANLAELFGDPGDAERWRETADEIRERLEGWYGLERGFWP-EFGYFIRIY 245 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHEESGGGBT-TSSBESEES
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhccccccccC-CCCeEEEec
Confidence 45567788889999999999999999999999999999 234554 456665443
No 29
>PLN02703 beta-fructofuranosidase
Probab=54.25 E-value=3.7e+02 Score=30.42 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhc
Q 041103 221 ILSAMVYDIYNRTGDFDFVKKAL--PALLKEHQFWNSR 256 (516)
Q Consensus 221 lla~mV~~~y~~t~D~~fL~~~l--P~L~kEy~fW~~~ 256 (516)
.+.+.++.|.+.|+|.+|.++.- +.+.+-..+-...
T Consensus 261 WWIIllraY~k~TgD~sf~e~~~~Q~gI~liL~LcLa~ 298 (618)
T PLN02703 261 WWIILLRAYGKCTGDLSVQERVDVQTGIKMILKLCLAD 298 (618)
T ss_pred HHHHHHHHHHHhhccHHHhhhhhHHHHHHHHHHHHccC
Confidence 56678899999999999998877 8888888764443
No 30
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=53.53 E-value=25 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 041103 320 IDLNIFILKMELDIASMAQIVGDNRTAESFLKTAQARKQA 359 (516)
Q Consensus 320 VDLNAlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~a 359 (516)
-.+|.++|.-..+.+.+.+++.-+.-+..|++.+++|.+.
T Consensus 5 ~~~~~~~~~~~~n~~~l~~ll~~~~La~~Wr~~~~kRL~~ 44 (47)
T PF03475_consen 5 ARVNRLLYHDRLNPEALERLLALPALAESWRKSFEKRLEK 44 (47)
T ss_dssp HHHHHHHHTS---HHHHHHHHTSTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHcCCcccHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999888753
No 31
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=47.79 E-value=2.5e+02 Score=30.53 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=23.8
Q ss_pred ccchhhHHHHhhcCCCCchHHHHHHHhhhhhc
Q 041103 397 NAFASNFVPIWIDLFNSDTCIVEKVRKGFQSS 428 (516)
Q Consensus 397 ~~~~s~~~PLwagia~~~~~~a~~vl~~L~~~ 428 (516)
-+...|++-..+|++++ +|++++++.+...
T Consensus 291 ff~lGNlLAiLsgLat~--~qa~~I~~lIe~~ 320 (436)
T PF12899_consen 291 FFSLGNLLAILSGLATP--EQAEAIMDLIEER 320 (436)
T ss_pred ehhhhhHHHHHhcCCCH--HHHHHHHHHHHHH
Confidence 46678999999999996 5688888887653
No 32
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=43.02 E-value=28 Score=39.57 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeE
Q 041103 331 LDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQW 372 (516)
Q Consensus 331 ~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y 372 (516)
-.+|.+|+.+|+.++|+.|+.+++..|. +||++.|+=
T Consensus 491 faiA~vAk~lG~te~A~~y~arS~nwrn-----lfn~~tGfm 527 (768)
T COG3537 491 FAIAQVAKSLGDTEEAKVYQARSQNWRN-----LFNPDTGFM 527 (768)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHh-----hcCcccccc
Confidence 4789999999999999999999988874 689988863
No 33
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=42.16 E-value=2.7e+02 Score=29.84 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCcccchhhhhcc-cCCCCccc-hhhHHHHh
Q 041103 330 ELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGTSSQECRRWKA-SNQNNNAF-ASNFVPIW 407 (516)
Q Consensus 330 e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~~~~~~y~~~~-~~~~~~~~-~s~~~PLw 407 (516)
-..+..|++..++ ..|.+.++.-.+.+.+.- .+|.-=|+-.-++.+ . +.. ......++ -+.=+|||
T Consensus 185 p~~~~~fa~~~~~----~~W~~l~~~~~~lL~~~a---~tGL~PDWv~~~~~~---~--~~p~~~~~~~~sYdAiRVpLW 252 (376)
T PRK11097 185 PQLLRRFARFLPG----GPWAALAATNARLLLETA---PKGFSPDWVRYQKGK---G--FQPDPEKGDIGSYDAIRVYLW 252 (376)
T ss_pred HHHHHHHHHhcCC----chHHHHHHHHHHHHHHhc---ccCCCCcceeEcCCC---C--cccCCCCCCCcchhHhHHhhh
Confidence 3445556666553 468888888888888755 678755553322210 0 000 11222233 34458999
Q ss_pred hcCCCCchHHHHHHHhhhhhcCCcccceeeeccCCChhhHHHHHHHHhCcccccccccccccCCCCCccCCCCCccccHH
Q 041103 408 IDLFNSDTCIVEKVRKGFQSSGLLGAAGIATSLTRSGEQCNYVAYKETGAMHEKYDVEKCRDIGGGGEYIPQTGFSWSNG 487 (516)
Q Consensus 408 agia~~~~~~a~~vl~~L~~~~ll~~gGIpTsl~~sgqQ~n~~~y~~tG~m~EKYdv~~~g~~GgGGEY~~Q~GFGWTNG 487 (516)
+|+..++..+.+.+++.+.. .+..+.+.|..-|+.|+.++...+ | ...|| .+
T Consensus 253 agm~~~~dp~~~~ll~~~~~--------------------~~~~~~~~~~~p~~vd~~tG~~~~----~-~~~Gf---~A 304 (376)
T PRK11097 253 AGMLADGDPQKARLLARFKP--------------------MAALTAKNGAPPEKVDVATGKAQG----N-GPVGF---SA 304 (376)
T ss_pred ccccCccChhHHHHHHHHHH--------------------HHHHHhhcCCCCeeEECCCCcCCC----C-CCccH---HH
Confidence 99876544566677777643 223344456566788887654333 2 24556 44
Q ss_pred HHHHHHHHcCCC
Q 041103 488 AVLAFLEEFGWP 499 (516)
Q Consensus 488 V~L~ll~~yg~~ 499 (516)
.+|=+|..-|.+
T Consensus 305 a~lp~l~~~~~~ 316 (376)
T PRK11097 305 ALLPFLQALGEP 316 (376)
T ss_pred HHHHHHHhcCCc
Confidence 555566554443
No 34
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=40.46 E-value=65 Score=21.55 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 041103 328 KMELDIASMAQIVGDNRTAESFLKTAQARKQAI 360 (516)
Q Consensus 328 ~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aI 360 (516)
.....|+.++...|+.++|..+.+++-.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 346788889999999999999999998888765
No 35
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=39.69 E-value=13 Score=41.35 Aligned_cols=42 Identities=29% Similarity=0.447 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEee
Q 041103 329 MELDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDY 375 (516)
Q Consensus 329 ~e~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dy 375 (516)
.--.||++|+.||+++.++.|.+||...| -+||+++|++.-.
T Consensus 243 ~D~~iA~~A~~LG~~~~~~~~~~Rs~ny~-----n~fd~~tgf~~pr 284 (502)
T PF07971_consen 243 DDWAIAQMAKALGKKEDADKFLKRSQNYR-----NVFDPETGFFRPR 284 (502)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHCCGGGGG-----GGEETTTTCE--B
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----HHcCCccCCcccc
Confidence 44589999999999999999999998765 4799999887644
No 36
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=37.05 E-value=84 Score=33.56 Aligned_cols=38 Identities=26% Similarity=0.634 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhcCc
Q 041103 221 ILSAMVYDIYNRTGDFDFVKKA-LPALLKEHQFWNSRIH 258 (516)
Q Consensus 221 lla~mV~~~y~~t~D~~fL~~~-lP~L~kEy~fW~~~R~ 258 (516)
=.+.+++.|+..|+|.+||++. +|.|..--+||.+.-.
T Consensus 109 dIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~ 147 (370)
T PF03632_consen 109 DIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVE 147 (370)
T ss_dssp HHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-E
T ss_pred HHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheE
Confidence 3567899999999999999876 6655555679997643
No 37
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=33.49 E-value=92 Score=32.48 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeeccCCc
Q 041103 332 DIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWISNGT 381 (516)
Q Consensus 332 ~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~~~~ 381 (516)
.+..++++.|+. .|.+++.+.-+.+.+.+||++.|.|+++--..++
T Consensus 310 a~~~l~~~tgd~----~~~~~~~~~~~~~~~~~~d~~~G~w~~~~~~~g~ 355 (384)
T cd00249 310 AALALAGITGDE----RYWQWYQRAWAYLWRHFIDPEYGLWFGYLDADGK 355 (384)
T ss_pred HHHHHHHhcCCH----HHHHHHHHHHHHHHHhcCCCCCCcceeeECCCCC
Confidence 344556666754 5888899999999999999999999998655554
No 38
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=32.44 E-value=25 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHhcCCccCCCCCChHHHHHHH
Q 041103 101 VTAFHKLPRNASESVSAPDFKEFL 124 (516)
Q Consensus 101 l~~f~~l~~~~~~~~~~~~l~~Fv 124 (516)
-+.|+++-.+.+|.++.+++++||
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 356777777778889999999986
No 39
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=29.10 E-value=1.4e+02 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 041103 328 KMELDIASMAQIVGDNRTAESFLKTAQARK 357 (516)
Q Consensus 328 ~~e~~LA~la~~lG~~~~A~~~~~~A~~rk 357 (516)
.....++.++..+|+.++|..+-+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445678999999999999998888877654
No 40
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=29.02 E-value=1.3e+02 Score=28.70 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeee
Q 041103 331 LDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYW 376 (516)
Q Consensus 331 ~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dyd 376 (516)
..+++|++.+|+.+.++.|.+.|+.......+.--|.+ |-.+...
T Consensus 4 ~A~s~ia~~~G~~~~a~~Y~~~A~~~a~~W~~~a~~~~-g~H~~L~ 48 (171)
T PF08760_consen 4 GAMSEIASMLGHTEDAANYSDIAKSYASQWQTLAISTD-GDHYTLA 48 (171)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhhccCC-CCeEEee
Confidence 57899999999999999999999999988888766433 3344433
No 41
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=28.80 E-value=1.4e+02 Score=23.57 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Q 041103 323 NIFILKMELDIASMAQIV-GDNRTAESFLKTAQARKQ 358 (516)
Q Consensus 323 NAlLy~~e~~LA~la~~l-G~~~~A~~~~~~A~~rk~ 358 (516)
|.-+......|+.+++.. |+.-++..|++.|..++.
T Consensus 1 N~~i~~~L~~la~~~~~~~~~~~r~~aY~~Aa~~i~~ 37 (68)
T PF14716_consen 1 NQEIADALEELADLYELQGGDPFRARAYRRAAAAIKA 37 (68)
T ss_dssp THHHHHHHHHHHHHHHHTSTSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHh
Confidence 556777888999999999 777777788887776664
No 42
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=2.1e+02 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCeEEeeecc
Q 041103 347 ESFLKTAQARKQAINSVFWNEEKGQWLDYWIS 378 (516)
Q Consensus 347 ~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~ 378 (516)
..|.+.|.++.+.+.+.|||++.| |||..-.
T Consensus 487 ~~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~~ 517 (667)
T COG1331 487 LAYLEKAIELADEAIADFWDDEGG-FYDTPSD 517 (667)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-cccCCCc
Confidence 369999999999999999999966 8876543
No 43
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=27.94 E-value=1.3e+02 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 041103 330 ELDIASMAQIVGDNRTAESFLKTAQARKQA 359 (516)
Q Consensus 330 e~~LA~la~~lG~~~~A~~~~~~A~~rk~a 359 (516)
...|+.++...|+.++|..+-++|-.+...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 357899999999999999988887665543
No 44
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=26.36 E-value=1.1e+02 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 041103 219 PPILSAMVYDIYNRTGDFDFVKKALPAL 246 (516)
Q Consensus 219 PPlla~mV~~~y~~t~D~~fL~~~lP~L 246 (516)
..++.-|+..+|++|++.+ +++++-.+
T Consensus 52 kavlvkmlrkly~~tk~e~-vkrmlhli 78 (79)
T PF09061_consen 52 KAVLVKMLRKLYEATKNEE-VKRMLHLI 78 (79)
T ss_dssp HHHHHHHHHHHHHHH--HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHH-HHHHHHhc
Confidence 3588899999999999977 78887654
No 45
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.88 E-value=82 Score=34.34 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=33.1
Q ss_pred hCccccccccccc--ccCCCCCccC---------CCCCccccHHH--HHHHHHHcCC
Q 041103 455 TGAMHEKYDVEKC--RDIGGGGEYI---------PQTGFSWSNGA--VLAFLEEFGW 498 (516)
Q Consensus 455 tG~m~EKYdv~~~--g~~GgGGEY~---------~Q~GFGWTNGV--~L~ll~~yg~ 498 (516)
||.+||-+....+ +..+|||.|. .-.|.||.-|| ++.+|...|.
T Consensus 272 tg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~ 328 (429)
T COG0124 272 TGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGK 328 (429)
T ss_pred cceEEEEEEcCCccccceecCccchHHHHHhCCCCCCceeEehHHHHHHHHHHHcCC
Confidence 6999998877643 4577899995 34678999998 4556778875
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=23.05 E-value=58 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHHHHHhcCCccCCCCCChHHHHHHHHh
Q 041103 99 TTVTAFHKLPRNASESVSAPDFKEFLHE 126 (516)
Q Consensus 99 ~il~~f~~l~~~~~~~~~~~~l~~Fv~~ 126 (516)
++.++|+....+.+|.++.+++.+.+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3566788887788889999999988764
No 47
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=22.08 E-value=59 Score=33.30 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=55.2
Q ss_pred hhhhcCC-CCCCCcCCCCCC---------------CCHHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccCC
Q 041103 76 ATFGKKD-FDPKLYVDLSLK---------------SGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYAE 139 (516)
Q Consensus 76 ~~vq~~~-fDsKtFvD~~~k---------------~~~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~~ 139 (516)
.....++ +|=|-|||.... ++.+.|++.|.+.+. +-.+||.--|.....-+. .-
T Consensus 133 ~~~~lr~~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrmp---------dy~~yI~PQ~~~tDI~fq-r~ 202 (277)
T cd02029 133 EGYNVAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRMP---------DYINYICPQFSRTDINFQ-RV 202 (277)
T ss_pred ccHHHHHhCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhCc---------hHHhhCCcccccCcEEEe-cc
Confidence 3345556 499999997653 366667777766652 456666666654443333 23
Q ss_pred CCCCCCCCCCcCCC-C--CChhHHHHHHHHHHhhhccccccccccccCC-----CccccccCCCCcccCCCC
Q 041103 140 PPDFVPEPDGFLPK-V--KNPQVRAWALEVHALWKNLSRRVSGSVLDRL-----EFHTLLLLPGPIVIPSSR 203 (516)
Q Consensus 140 p~d~~~~p~~~l~~-i--~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~p-----~~~sli~lp~pfiVPGGR 203 (516)
|.==++|| |+.+ | .|+++- ..|=-++.-.+-| -..|...=+|..|||||.
T Consensus 203 p~vdts~p--f~~~~~p~~~es~~------------vi~~~~~~~~d~~~~~~~~~~~~~s~~~~~v~~g~~ 260 (277)
T cd02029 203 PTVDTSNP--FIARDIPTADESFV------------VIHFRKPWGIDFPYLLNMLHDSFMSRPNTIVVPGGK 260 (277)
T ss_pred CcccCCCc--ccccCCCCCCcceE------------EEEecCCCCCCHHHHHHhhccchhcCCCcEEecCch
Confidence 32224566 5444 2 233221 1110001000001 135677778999999996
No 48
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=21.24 E-value=1.2e+02 Score=31.49 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCeEEeeecc
Q 041103 331 LDIASMAQIVGDNRTAESFLKTAQARKQAINSVFWNEEKGQWLDYWIS 378 (516)
Q Consensus 331 ~~LA~la~~lG~~~~A~~~~~~A~~rk~aIn~~lWDee~G~y~Dydl~ 378 (516)
..+|. ++..|+. ++.+.|++..+.|++.+||++.|.|.+..-.
T Consensus 88 ~ala~-~~~tg~~----~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~ 130 (346)
T PF07221_consen 88 LALAE-ARATGDP----EALELAEQTLEFLERRFWDPEGGGYRESFDP 130 (346)
T ss_dssp HHHHH-HHCTT-T----THHHHHHHHHHHHHHHTEETTTTEE--EETT
T ss_pred HHHHH-HHHhCCh----hHHHHHHHHHHHHHHHhcccccCcceeccCC
Confidence 34455 5666765 4578889999999999999999998866533
No 49
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=20.84 E-value=2.3e+02 Score=21.94 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 041103 324 IFILKMELDIASMAQIVGDNRTAESFLKTAQARKQA 359 (516)
Q Consensus 324 AlLy~~e~~LA~la~~lG~~~~A~~~~~~A~~rk~a 359 (516)
-.+......|+.++...|+.++|..+-++|-++.++
T Consensus 43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 345666788999999999999999999999887653
No 50
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=20.53 E-value=75 Score=26.28 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred hhHHhhhhcCCC---CCCCcCCCCCCCCHHHHHHHHhcCCccCCCCCChHHHHHHHHhhcCCCCCCcccC-CCCCCCCCC
Q 041103 72 EIALATFGKKDF---DPKLYVDLSLKSGLSTTVTAFHKLPRNASESVSAPDFKEFLHEYFDGAGDDLVYA-EPPDFVPEP 147 (516)
Q Consensus 72 g~ll~~vq~~~f---DsKtFvD~~~k~~~~~il~~f~~l~~~~~~~~~~~~l~~Fv~~~F~~~g~el~~~-~p~d~~~~p 147 (516)
-+||+.||...| |-.-|.|.-|. + ++.|+.|++... ..++..++|-+.|-=.-....... .|=.|.+.|
T Consensus 2 ~~LL~~I~~~~Fa~~dl~LyLDTHP~-d-~~Al~~y~~~~~-----~~~~l~~~Ye~~yGPLt~~~~~~~~~~w~Wi~~P 74 (78)
T PF12652_consen 2 EELLREIQEVSFAVVDLNLYLDTHPD-D-QEALEYYNEYSK-----QRKQLKKEYEKRYGPLTNFGVSPSRDPWQWIEEP 74 (78)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCC-c-HHHHHHHHHHHH-----HHHHHHHHHHHHhCCCcCCCcCCCCCCcccCCCC
Confidence 368888888886 99999999983 3 455688888764 234455555554432211111111 344677766
No 51
>PRK15453 phosphoribulokinase; Provisional
Probab=20.06 E-value=88 Score=32.30 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=14.0
Q ss_pred ccccccCCCCcccCCCC
Q 041103 187 FHTLLLLPGPIVIPSSR 203 (516)
Q Consensus 187 ~~sli~lp~pfiVPGGR 203 (516)
..|...=+|..|||||.
T Consensus 250 ~~~~~s~~~~~v~~g~~ 266 (290)
T PRK15453 250 QGSFMSRANTIVVPGGK 266 (290)
T ss_pred ccchhcCCCcEEecCch
Confidence 35677778999999997
Done!